<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 06:04:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274686" ref_strand="-" ref_description="SGN-E274686 [cLEN-13-K2]">
      <seq>tatacagcaaaactccattggtggtgctgctgtctggtgcatgggctttcagaaaattccgggtcaaggattgacaattttaggagaccttgttctaaaagacaagattatagtttacgatctggctggacaacggattggatgggccaactacgattgttcgcaagctgttaatgtttctgctaccacgagcagagggaaaactgagtatgtcaatgcaggacagattggtaacagttcaccacgtaacgacccttacacgctgctattaagcgtcattctaactttcgtgttgcaagcattagccttcggcacttactcattcttgtaacagtttggtattgtggaagtcaactgttaaattctttctcatttttgtatagcccgctgtcctactatagttatttattttaccgcggtcgataaagatttagatttcttttatagtagtagccctagttctgttgtttgttcagacagtgtcctagttccacaaatagtatactcatgtagtggttaaatttcttgtaaagtagatttcaacacatgtattacaataccatttgattttgaatgaaaattttgttaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="1" stop="1627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="205" g_stop="271" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="86" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="272" i_stop="689" i_length="418">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="690" g_stop="761" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="158" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="762" i_stop="893" i_length="132">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="894" g_stop="1327" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="592" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1328" i_stop="1442" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1443" g_stop="1455" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="605" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E274686" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274686" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="205" e_stop="271"/>
          <exon e_start="690" e_stop="761"/>
          <exon e_start="894" e_stop="1327"/>
          <exon e_start="1443" e_stop="1455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTGCTGCTGTCTGGTGCATGGGCTTTCAGAAAATTCCGGGTCAAGGATTGACAATTTTAGGAGGTAATCCCGTGCATCTGATCTCATTTATAAGTCCCTCGTTTCGTGTTTCTCATGATACCGTCTCTTTCATTGATTTCCACTTGCTGAGATAAATTGGTTAAGTCAGATTCGTTTACGTCCTGTAATTCTAAAGGACTATCACAGAAAAAATTTAAGCACCAGAAGAATCTATGCATAAATGTTAACGAGTTTACCTGATTCATGCCCATTATTGGTTTCACCTCCAGGATCTCTTTTTTACCGTCTACTGGTTTTGCCAGTACATTATTTGATCATTTCATGATTCATAATTCATAATTCCTATTCGATATTTCACGTTTTACAAACAAAGCATTTGCTTTTAAGGATTGTGCCATTTTAGATGGACACATTCTCCTTCTCTTCGTTTTTGTTGATTCATATGTTTATATTTGTGCAGACCTTGTTCTAAAAGACAAGATTATAGTTTACGATCTGGCTGGACAACGGATTGGATGGGCCAACTACGATTGTAAGTAATTTAACTCCATTCAATCTTTGACCAAACTTTATAGATCACATCAATACTACATACAATATAACTTTAGTCAGTTGTCGAGTAAAGCTAAGACACGTTCCATTGTCCAATGTATTTAAATATCAGGTTCGCAAGCTGTTAATGTTTCTGCTACCACGAGCAGAGGGAAAACTGAGTATGTCAATGCAGGACAGATTGGTAACAGTTCACCACGTAACGACCCTTACACGCTGCTATTAAGCGTCATTCTAACTTTCGTGTTGCAAGCATTAGCCTTCGGCACTTACTCATTCTTGTAACAGTTTGGTATTGTGGAAGTCAACTGTTAAATTCTTTCTCATTTTTGTATAGCCCGCTGTCCTACTATAGTTATTTATTTTACCGCGGTCGATAAAGATTTAGATTTCTTTTATAGTAGTAGCCCTAGTTCTGTTGTTTGTTCAGACAGTGTCCTAGTTCCACAAATAGTATACTCATGTAGTGGTTAAATTTCTTGTAAAGTAGATTTCAACACATGTATTACAATACCATTTGATTTTGAATGAAAATTTTGTTAAATATTTCTTCAGCCAACTGTTTTTGGCCAATGTCAAAGTATTTGTCTTTTATCACCAAGGGATATATTTTGAAGTTCTTTGAAATTAACCTGGACACACACTTACAATTTAAATATAGAAGAAAATAAACG</genome_strand>
        <mrna_strand>GGTGGTGCTGCTGTCTGGTGCATGGGCTTTCAGAAAATTCCGGGTCAAGGATTGACAATTTTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTTCTAAAAGACAAGATTATAGTTTACGATCTGGCTGGACAACGGATTGGATGGGCCAACTACGATT....................................................................................................................................GTTCGCAAGCTGTTAATGTTTCTGCTACCACGAGCAGAGGGAAAACTGAGTATGTCAATGCAGGACAGATTGGTAACAGTTCACCACGTAACGACCCTTACACGCTGCTATTAAGCGTCATTCTAACTTTCGTGTTGCAAGCATTAGCCTTCGGCACTTACTCATTCTTGTAACAGTTTGGTATTGTGGAAGTCAACTGTTAAATTCTTTCTCATTTTTGTATAGCCCGCTGTCCTACTATAGTTATTTATTTTACCGCGGTCGATAAAGATTTAGATTTCTTTTATAGTAGTAGCCCTAGTTCTGTTGTTTGTTCAGACAGTGTCCTAGTTCCACAAATAGTATACTCATGTAGTGGTTAAATTTCTTGTAAAGTAGATTTCAACACATGTATTACAATACCATTTGATTTTGAATGAAAATTTTGTTAAATA...................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351475" ref_strand="+" ref_description="SGN-E351475 [cTOS-12-P16]">
      <seq>ctgctgtctggtgcatgggctttcagaaaattccgggtcaaggattgacaattttaggagaccttgttctaaaagacaagattatagtttacgatctggctggacaacggattggatgggccaactacgattgttcgcaagctgttaatgtttctgctaccacgagcagagggaaaactgagtatgtcaatgcaggacagattggtaacagttcaccacgtaacgacccttacacgctgctattaagcgtcattctaactttcgtgttgcaagcattagccttcggcacttactcattcttgtaacagtttggtattgtggaagtcaactgttaaattctttctcatttttgtatagcccgctgtcctactatagttatttattttaccgcggtcgataaagatttagatttcttttatagtagtagccctagttctgttgtttgttcagacagtgtcctagttccacaaatagtatactcatgtagtggttaaatttcttgtaaagtagatttcaacacatgtattacaataccatttgattttgaatgaaaattttgttaaatatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="1" stop="1630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="212" g_stop="271" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="272" i_stop="689" i_length="418">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="690" g_stop="761" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="132" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="762" i_stop="893" i_length="132">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="894" g_stop="1330" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="569" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1331" i_stop="1442" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1443" g_stop="1456" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="583" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E351475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="212" e_stop="271"/>
          <exon e_start="690" e_stop="761"/>
          <exon e_start="894" e_stop="1330"/>
          <exon e_start="1443" e_stop="1456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGTCTGGTGCATGGGCTTTCAGAAAATTCCGGGTCAAGGATTGACAATTTTAGGAGGTAATCCCGTGCATCTGATCTCATTTATAAGTCCCTCGTTTCGTGTTTCTCATGATACCGTCTCTTTCATTGATTTCCACTTGCTGAGATAAATTGGTTAAGTCAGATTCGTTTACGTCCTGTAATTCTAAAGGACTATCACAGAAAAAATTTAAGCACCAGAAGAATCTATGCATAAATGTTAACGAGTTTACCTGATTCATGCCCATTATTGGTTTCACCTCCAGGATCTCTTTTTTACCGTCTACTGGTTTTGCCAGTACATTATTTGATCATTTCATGATTCATAATTCATAATTCCTATTCGATATTTCACGTTTTACAAACAAAGCATTTGCTTTTAAGGATTGTGCCATTTTAGATGGACACATTCTCCTTCTCTTCGTTTTTGTTGATTCATATGTTTATATTTGTGCAGACCTTGTTCTAAAAGACAAGATTATAGTTTACGATCTGGCTGGACAACGGATTGGATGGGCCAACTACGATTGTAAGTAATTTAACTCCATTCAATCTTTGACCAAACTTTATAGATCACATCAATACTACATACAATATAACTTTAGTCAGTTGTCGAGTAAAGCTAAGACACGTTCCATTGTCCAATGTATTTAAATATCAGGTTCGCAAGCTGTTAATGTTTCTGCTACCACGAGCAGAGGGAAAACTGAGTATGTCAATGCAGGACAGATTGGTAACAGTTCACCACGTAACGACCCTTACACGCTGCTATTAAGCGTCATTCTAACTTTCGTGTTGCAAGCATTAGCCTTCGGCACTTACTCATTCTTGTAACAGTTTGGTATTGTGGAAGTCAACTGTTAAATTCTTTCTCATTTTTGTATAGCCCGCTGTCCTACTATAGTTATTTATTTTACCGCGGTCGATAAAGATTTAGATTTCTTTTATAGTAGTAGCCCTAGTTCTGTTGTTTGTTCAGACAGTGTCCTAGTTCCACAAATAGTATACTCATGTAGTGGTTAAATTTCTTGTAAAGTAGATTTCAACACATGTATTACAATACCATTTGATTTTGAATGAAAATTTTGTTAAATATTTCTTCAGCCAACTGTTTTTGGCCAATGTCAAAGTATTTGTCTTTTATCACCAAGGGATATATTTTGAAGTTCTTTGAAATTAACCTGGACACACACTTACAATTTAAATATAGAAGAAAATAAACGC</genome_strand>
        <mrna_strand>CTGCTGTCTGGTGCATGGGCTTTCAGAAAATTCCGGGTCAAGGATTGACAATTTTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTTCTAAAAGACAAGATTATAGTTTACGATCTGGCTGGACAACGGATTGGATGGGCCAACTACGATT....................................................................................................................................GTTCGCAAGCTGTTAATGTTTCTGCTACCACGAGCAGAGGGAAAACTGAGTATGTCAATGCAGGACAGATTGGTAACAGTTCACCACGTAACGACCCTTACACGCTGCTATTAAGCGTCATTCTAACTTTCGTGTTGCAAGCATTAGCCTTCGGCACTTACTCATTCTTGTAACAGTTTGGTATTGTGGAAGTCAACTGTTAAATTCTTTCTCATTTTTGTATAGCCCGCTGTCCTACTATAGTTATTTATTTTACCGCGGTCGATAAAGATTTAGATTTCTTTTATAGTAGTAGCCCTAGTTCTGTTGTTTGTTCAGACAGTGTCCTAGTTCCACAAATAGTATACTCATGTAGTGGTTAAATTTCTTGTAAAGTAGATTTCAACACATGTATTACAATACCATTTGATTTTGAATGAAAATTTTGTTAAATATTT................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350723" ref_strand="+" ref_description="SGN-E350723 [cTOS-7-B5]">
      <seq>ctgctgtctggtgcatgggctttcagaaaattccgggtcaaggattgacaattttaggagaccttgttctaaaagacaagattatagtttacgatctggctggacaacggattggatgggccaactacgattgttcgcaagctgttaatgtttctgctaccacgagcagagggaaaactgagtatgtcaatgcaggacagattggtaacagttcaccacgtaacgacccttacacgctgctattaagcgtcattctaactttcgtgttgcaagcattagccttcggcacttactcattcttgtaacagtttggtattgtggaagtcaactgttaaattctttctcatttttgtatagcccgctgtcctactatagttatttattttaccgcggtcgataaagatttagatttcttttatagtagtagccctagttctgttgtttgttcagacagtgtcctagttccacaaatagtatactcatgtagtggttaaatttcttgtaaagtagatttcaacacatgtattacaataccatttgattttgaatgaaaattttgttaaatatttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="1" stop="1630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="212" g_stop="271" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="272" i_stop="689" i_length="418">
            <donor d_prob="0.747" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="690" g_stop="761" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="132" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="762" i_stop="893" i_length="132">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="894" g_stop="1330" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="569" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="592"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E350723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="212" e_stop="271"/>
          <exon e_start="690" e_stop="761"/>
          <exon e_start="894" e_stop="1330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGTCTGGTGCATGGGCTTTCAGAAAATTCCGGGTCAAGGATTGACAATTTTAGGAGGTAATCCCGTGCATCTGATCTCATTTATAAGTCCCTCGTTTCGTGTTTCTCATGATACCGTCTCTTTCATTGATTTCCACTTGCTGAGATAAATTGGTTAAGTCAGATTCGTTTACGTCCTGTAATTCTAAAGGACTATCACAGAAAAAATTTAAGCACCAGAAGAATCTATGCATAAATGTTAACGAGTTTACCTGATTCATGCCCATTATTGGTTTCACCTCCAGGATCTCTTTTTTACCGTCTACTGGTTTTGCCAGTACATTATTTGATCATTTCATGATTCATAATTCATAATTCCTATTCGATATTTCACGTTTTACAAACAAAGCATTTGCTTTTAAGGATTGTGCCATTTTAGATGGACACATTCTCCTTCTCTTCGTTTTTGTTGATTCATATGTTTATATTTGTGCAGACCTTGTTCTAAAAGACAAGATTATAGTTTACGATCTGGCTGGACAACGGATTGGATGGGCCAACTACGATTGTAAGTAATTTAACTCCATTCAATCTTTGACCAAACTTTATAGATCACATCAATACTACATACAATATAACTTTAGTCAGTTGTCGAGTAAAGCTAAGACACGTTCCATTGTCCAATGTATTTAAATATCAGGTTCGCAAGCTGTTAATGTTTCTGCTACCACGAGCAGAGGGAAAACTGAGTATGTCAATGCAGGACAGATTGGTAACAGTTCACCACGTAACGACCCTTACACGCTGCTATTAAGCGTCATTCTAACTTTCGTGTTGCAAGCATTAGCCTTCGGCACTTACTCATTCTTGTAACAGTTTGGTATTGTGGAAGTCAACTGTTAAATTCTTTCTCATTTTTGTATAGCCCGCTGTCCTACTATAGTTATTTATTTTACCGCGGTCGATAAAGATTTAGATTTCTTTTATAGTAGTAGCCCTAGTTCTGTTGTTTGTTCAGACAGTGTCCTAGTTCCACAAATAGTATACTCATGTAGTGGTTAAATTTCTTGTAAAGTAGATTTCAACACATGTATTACAATACCATTTGATTTTGAATGAAAATTTTGTTAAATATTT</genome_strand>
        <mrna_strand>CTGCTGTCTGGTGCATGGGCTTTCAGAAAATTCCGGGTCAAGGATTGACAATTTTAGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTTCTAAAAGACAAGATTATAGTTTACGATCTGGCTGGACAACGGATTGGATGGGCCAACTACGATT....................................................................................................................................GTTCGCAAGCTGTTAATGTTTCTGCTACCACGAGCAGAGGGAAAACTGAGTATGTCAATGCAGGACAGATTGGTAACAGTTCACCACGTAACGACCCTTACACGCTGCTATTAAGCGTCATTCTAACTTTCGTGTTGCAAGCATTAGCCTTCGGCACTTACTCATTCTTGTAACAGTTTGGTATTGTGGAAGTCAACTGTTAAATTCTTTCTCATTTTTGTATAGCCCGCTGTCCTACTATAGTTATTTATTTTACCGCGGTCGATAAAGATTTAGATTTCTTTTATAGTAGTAGCCCTAGTTCTGTTGTTTGTTCAGACAGTGTCCTAGTTCCACAAATAGTATACTCATGTAGTGGTTAAATTTCTTGTAAAGTAGATTTCAACACATGTATTACAATACCATTTGATTTTGAATGAAAATTTTGTTAAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322108" ref_strand="-" ref_description="SGN-E322108 [cTOB-24-A17]">
      <seq>tcctcctgagcatgttcatcccagattgtggaaaggtgtgaaccgctggtacaaaccgttggactgggttaaaattgaaaggaagcgtcaggacaaggaaagaacattggaagagcataataagttggttggagaaattctaaaacgtgacaaaaagaggcgaaagaggatcgaggcagctgggattgattacgagtgcccagaaatggtgggtgcaattcaggctgcaccaaagaagatcaggttcactgattagatctttataagtatagctcgtgaacgaaatagtatctatggcgacaagtagattactatgtgtatgcacggtgtaactgaagatcagctgaactgacagatgaacggccacattattttgctgcagagtaaactaatgatattgtcaaaggctcgtttagctatcgataactatggatttcttttattttgaaaattagaagagaaaaaagtggttgtataacttagaaaagacaaaggaagcccttgacaatttaatctattgattgtataccgtgaatccatctatcatctatttattgtaaagcattttgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="4089" stop="1223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3789" g_stop="3763" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2993" g_stop="2924" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="97" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2741" g_stop="2631" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="208" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2630" i_stop="1887" i_length="744">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1886" g_stop="1524" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="571" r_length="363" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="602"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E322108" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322108" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3789" e_stop="3763"/>
          <exon e_start="2993" e_stop="2924"/>
          <exon e_start="2741" e_stop="2631"/>
          <exon e_start="1886" e_stop="1524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTGAGCATGTTCATCCCAGATTGTAAGGGTTCCATTTTTTAAGCCAAATGATATTCATTTTAAAATTTCATATTTCTTGGGTTGCTTTTAAAAGTACTTTAAAGCTCTTTTCTTCTCGTTCCCCCCTCCCTTTTTTTTGGGGTTGGGTGGGTAGGGGGCTGATACAATAGTAAGGTACTACTAGTCTGGAATACTGTCACTTCGTATTAAATTGAATCTGCTCCCCTTCCTACTCCTTGCTTAGAGACGGTAATGCCTTGCAAAAGACTATCAGCTTGCTGAAGTGGTGGGTTGAATTGATGGAAAATAATCTTTTCTTAACGACTTAACCAAATGCTCTTGGTCTAAGATTCCAAGTGATATATAACTTTTACCAAGAGATGGATACGAGTACTACGGGGTTGAAATGCTTGAAAATTATCAATGGAAAAGACTAACCTGAGATATTCCACCTTCAGAAGCAACCTGATGACAATCAGCAATATTGTGGCTGGTTCAAGTGTAAACAGGGATGTATTTCTAAACTAGGGTCTAGAGAGTTCTCCTTTCTGAATAATCCCACTGACGTGTGGTTCCACAATGCCAGTTCTGCTCTATGGAATTTACCATTATGTTACATATAATGTTCTATACTAAATTTATGTCATTTTTCTTGCAAAATTTTTGTGCATTATGATTATGAGTGAGTTTGGTATCGAATAGTCTGATGCATATGTAAGTGGTGTCTTTAAGTTATCGTCTTTTTTCCTCCTCTTTTTAGGTACAGCTCTAATTTGTATATTTGGTTCTAGGTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAGGTAGTGTTTGATCTTGTATGTGTGTGATTCAGATATTTACATGATATGCAAAAAACTGAGAGACATTGCTTTTAGTTATATATGAACTCTCTATCGCTTTTCCATAATGGTGCAAAGTTTGACATACATGTTTTTTGAACTGGTTTAAATGTGAAACTTATGGAGTGATGATAATTATCCAGGAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATGGTAATAGCAAATGTTCTTTATTACATTTCACATTATTATCTTGTGCTGCAAATTCTACTTATTTATGCATGTTTACTAAACTGGTCTAGGAACTACCTGTTTGCTAATTTGACAATTACTTGGATAGGATTTCCATAACATAAGAAATGACTACTGTTTTTGAGCATGGTATTAAGGAAGGAAATAAGTACCTAACATGTCAATTAGAAGGAAGATCAACACAAGGTTGTTACATGCATATGCAGATAATTTCCTAGGCTATCAGAAAATTACAGAACATCCGAATTTAGTACTAGATTTAGATGACAGAATCCATCAAATTGAGGGATTTTCTTGTATAAACTCGAGGAAAAAAAACAAGTTCCATGAGAAACATACAACACTGCAAAAAAGGCATTATGGTTGACAAATCTGTTCTTAGATAGCCACATTTGTCAGAACCAAAAAGAGCATTTTAGACATGTGAGAGATAGCAGTACCTGATGAATAATCGGCTTGCGGACAAGTTGGACACGGCCATTATTTAAAAGAATAGGTTTCCAGACATGTTACTTAGTACATGAACAACTCTCTATGTTTTACAATAAAACTTTGCATGAGGACTCTTCCGGTCAAAAATGTAGAAACGAGGCCTCTGTTATTCGTCTAGCAGATGAAAAAGAGCAAGACAGTTGCAACACTTCTGAAATTACTCTTAAAGAGAAGCATAAAAGTGATTTTTAACATTTACAATGTGATTTGCAGGTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATGCACGGTGTAACTGAAGATCAGCTGAACTGACAGATGAACGGCCACATTATTTTGCTGCAGAGTAAACTAATGATATTGTCAAAGGCTCGTTTAGCTATCGATAACTATGGATTTCTTTTATTTTGAAAATTAGAAGAGAAAAAAGTGGTTGTATAACTTAGAAAAGACAAAGGAAGACCTTGACAATTTAATCTATTGATTGTATACCGTGAATCCATCTATCATCTATTTATTGTAAAGCATTTTGTC</genome_strand>
        <mrna_strand>TCCTCCTGAGCATGTTCATCCCAGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG......................................................................................................................................................................................GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATGCACGGTGTAACTGAAGATCAGCTGAACTGACAGATGAACGGCCACATTATTTTGCTGCAGAGTAAACTAATGATATTGTCAAAGGCTCGTTTAGCTATCGATAACTATGGATTTCTTTTATTTTGAAAATTAGAAGAGAAAAAAGTGGTTGTATAACTTAGAAAAGACAAAGGAAGCCCTTGACAATTTAATCTATTGATTGTATACCGTGAATCCATCTATCATCTATTTATTGTAAAGCATTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322229" ref_strand="-" ref_description="SGN-E322229 [cTOB-24-B18]">
      <seq>gcatgttcatcccagattgtggaaaggtgtgaaccgctggtacaaaccgttggactgggttaaaattgaaaggaagcgtcaggacaaggaaagaacattggaagagcataataagttggttggagaaattctaaaacgtgacaaaaagaggcgaaagaggatcgaggcagctgggattgattacgagtgcccagaaatggtgggtgcaattcaggctgcaccaaagaagatcaggttcactgattagatctttataagtatagctcgtgaacgaaatagtatctatggcgacaagtagattactatgtgtatgcacggtgtaactgaagatcagctgaactgacagatgaacggccacattattttgctgcagagtaaactaatgatattgtcaaaggctcgtttagctatcgataactatggatttcttttattttgaaaattagaagagaaaaaagtggttgtataacttagaaaagacaaaggaagcccttgacaatttaatctattgattgtataccgtgaatccatctatcatctatttattgtaaagcattttgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="4080" stop="1223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3780" g_stop="3763" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769">
            <donor d_prob="0.952" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2993" g_stop="2924" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="88" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2741" g_stop="2631" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="199" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2630" i_stop="1887" i_length="744">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1886" g_stop="1524" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="562" r_length="363" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="563" polyA_stop="593"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E322229" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322229" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3780" e_stop="3763"/>
          <exon e_start="2993" e_stop="2924"/>
          <exon e_start="2741" e_stop="2631"/>
          <exon e_start="1886" e_stop="1524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGTTCATCCCAGATTGTAAGGGTTCCATTTTTTAAGCCAAATGATATTCATTTTAAAATTTCATATTTCTTGGGTTGCTTTTAAAAGTACTTTAAAGCTCTTTTCTTCTCGTTCCCCCCTCCCTTTTTTTTGGGGTTGGGTGGGTAGGGGGCTGATACAATAGTAAGGTACTACTAGTCTGGAATACTGTCACTTCGTATTAAATTGAATCTGCTCCCCTTCCTACTCCTTGCTTAGAGACGGTAATGCCTTGCAAAAGACTATCAGCTTGCTGAAGTGGTGGGTTGAATTGATGGAAAATAATCTTTTCTTAACGACTTAACCAAATGCTCTTGGTCTAAGATTCCAAGTGATATATAACTTTTACCAAGAGATGGATACGAGTACTACGGGGTTGAAATGCTTGAAAATTATCAATGGAAAAGACTAACCTGAGATATTCCACCTTCAGAAGCAACCTGATGACAATCAGCAATATTGTGGCTGGTTCAAGTGTAAACAGGGATGTATTTCTAAACTAGGGTCTAGAGAGTTCTCCTTTCTGAATAATCCCACTGACGTGTGGTTCCACAATGCCAGTTCTGCTCTATGGAATTTACCATTATGTTACATATAATGTTCTATACTAAATTTATGTCATTTTTCTTGCAAAATTTTTGTGCATTATGATTATGAGTGAGTTTGGTATCGAATAGTCTGATGCATATGTAAGTGGTGTCTTTAAGTTATCGTCTTTTTTCCTCCTCTTTTTAGGTACAGCTCTAATTTGTATATTTGGTTCTAGGTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAGGTAGTGTTTGATCTTGTATGTGTGTGATTCAGATATTTACATGATATGCAAAAAACTGAGAGACATTGCTTTTAGTTATATATGAACTCTCTATCGCTTTTCCATAATGGTGCAAAGTTTGACATACATGTTTTTTGAACTGGTTTAAATGTGAAACTTATGGAGTGATGATAATTATCCAGGAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATGGTAATAGCAAATGTTCTTTATTACATTTCACATTATTATCTTGTGCTGCAAATTCTACTTATTTATGCATGTTTACTAAACTGGTCTAGGAACTACCTGTTTGCTAATTTGACAATTACTTGGATAGGATTTCCATAACATAAGAAATGACTACTGTTTTTGAGCATGGTATTAAGGAAGGAAATAAGTACCTAACATGTCAATTAGAAGGAAGATCAACACAAGGTTGTTACATGCATATGCAGATAATTTCCTAGGCTATCAGAAAATTACAGAACATCCGAATTTAGTACTAGATTTAGATGACAGAATCCATCAAATTGAGGGATTTTCTTGTATAAACTCGAGGAAAAAAAACAAGTTCCATGAGAAACATACAACACTGCAAAAAAGGCATTATGGTTGACAAATCTGTTCTTAGATAGCCACATTTGTCAGAACCAAAAAGAGCATTTTAGACATGTGAGAGATAGCAGTACCTGATGAATAATCGGCTTGCGGACAAGTTGGACACGGCCATTATTTAAAAGAATAGGTTTCCAGACATGTTACTTAGTACATGAACAACTCTCTATGTTTTACAATAAAACTTTGCATGAGGACTCTTCCGGTCAAAAATGTAGAAACGAGGCCTCTGTTATTCGTCTAGCAGATGAAAAAGAGCAAGACAGTTGCAACACTTCTGAAATTACTCTTAAAGAGAAGCATAAAAGTGATTTTTAACATTTACAATGTGATTTGCAGGTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATGCACGGTGTAACTGAAGATCAGCTGAACTGACAGATGAACGGCCACATTATTTTGCTGCAGAGTAAACTAATGATATTGTCAAAGGCTCGTTTAGCTATCGATAACTATGGATTTCTTTTATTTTGAAAATTAGAAGAGAAAAAAGTGGTTGTATAACTTAGAAAAGACAAAGGAAGACCTTGACAATTTAATCTATTGATTGTATACCGTGAATCCATCTATCATCTATTTATTGTAAAGCATTTTGTC</genome_strand>
        <mrna_strand>GCATGTTCATCCCAGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG......................................................................................................................................................................................GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATGCACGGTGTAACTGAAGATCAGCTGAACTGACAGATGAACGGCCACATTATTTTGCTGCAGAGTAAACTAATGATATTGTCAAAGGCTCGTTTAGCTATCGATAACTATGGATTTCTTTTATTTTGAAAATTAGAAGAGAAAAAAGTGGTTGTATAACTTAGAAAAGACAAAGGAAGCCCTTGACAATTTAATCTATTGATTGTATACCGTGAATCCATCTATCATCTATTTATTGTAAAGCATTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707764" ref_strand="+" ref_description="SGN-E707764 [FA33DF08]">
      <seq>cgatttctgattgttttgacagagatgggtgccaaagggaggaagaaaagcataactaagaagttgaagaagggtgctaacgaattctcagcttcttcggtttctaaagataaagctgctgactttctgccattggaaggtgggccggcaagaaaactcccggatactgaagtacgggaaagtaaagcgacaatattgtatattggaaggattccacatggattttatgagaatgaaatggaaggtttctttaagcaatttggtacaattaagaggcttagacttgcaaggaataaaaagacgggaaaatcaaagcattttggcttcatagaatttgagtcccctgaggttgctaaagtggttgcggataccatgcataactatctattatttgagcacttgttgcaagttcgtcttattcctcctgagcatgttcatcccagattgtggaaaggtgtgaaccgctggtacaaaccgttggactgggttaaaattgaaaggaagcgtcaggacaaggaaagaacattggaagagcataataagttggttggagaaattctaaaacgtgacaaaaagaggcgaaagaggatcgaggcagctgggattgattacgagtgcccagaaatggtgggtgcaattcaggctgcaccaaagaagatcaggttcactgattagatctttataagtatagctcgtgaacgaaatagtatctatggcgacaagtagattactatgtgtatgcacggtgtaactgaagatcagctgaactgacagatgaacggccacattattttgctgcagagtaaactaatgatattgtcaaaggctcgtttagctatcgataactatggattttcttttattttgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="7141" stop="1343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6840" g_stop="6721" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="129" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5171" g_stop="5057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="244" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4931" g_stop="4876" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="300" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4014" g_stop="3967" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="348" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106">
            <donor d_prob="0.390" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3860" g_stop="3763" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="446" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2993" g_stop="2924" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="516" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2741" g_stop="2631" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="627" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2630" i_stop="1887" i_length="744">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1886" g_stop="1643" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="872" r_length="245" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E707764" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6840" e_stop="6721"/>
          <exon e_start="5171" e_stop="5057"/>
          <exon e_start="4931" e_stop="4876"/>
          <exon e_start="4014" e_stop="3967"/>
          <exon e_start="3860" e_stop="3763"/>
          <exon e_start="2993" e_stop="2924"/>
          <exon e_start="2741" e_stop="2631"/>
          <exon e_start="1886" e_stop="1643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTGGTATGTTTCTGGTATATTAAAGTTAGTAAAGCTCCTCAATGCTCAAGAAGTTCTTAGAATGAGAGAACCGTTTAGAACAATTTTTCCCTTCATGTTTTTAGTTTATATCTTTCCCTCTTTGAGCCAAAGGGTCTAGGAAACCGCCTCTCTACCTTCTCAAGGTAGGGGTATGGTCTGCATGCACTCTACCTTCTCACGACCTCACCTGTGGGATTATACTGGATTTGTTGTTGTTGTTTTTAGTTTCTTTCATATTACATGTTAGTTTGTCTTTTTGGTATATATGTTTGAAATGACTCAATGTGTGTTGTGATGGTTGGAAACTCTATCTATTTGGTTGTTGGGAGATCGTTAGAAGATGTTTGCTATGTAGGACTGGAAAGGGAACTTAAAGGAAAAAATGGAGTAACTGTTTTGTTGGCTAATAGTTTCCCAGACATTTGATGGAACTAGCCACCATTCTTAATTACTTATAGGTCAGTTCTAATAGAAGTAGCCTATATGCATATAATATCCTGGTAAAGCATGTAAAATCTTCATCTTACAATTGAGATAGAATTGTTGACTTTAGAACATTTGTAAAAGAAAAATAGTTTCCTGGTTCTCTAATAGTGCTTCATGATCTAAAACAAAAAGATGTAGTTGCATATAAGGCGGAGTACTTGGCACGAGCTGGCATGGACACCATTATTTTTTCAAAAAGAAGATATTATGTAGTACTTGAAATATTTTAGTTCTTTACGAGAGTGATATCATGTAAATTTTAGTTTGAAACTCTCACGAGAGATTCCTGATTAAAAAACATTTGGATATAATAATGGAAAACTAAATAGATAACTGAAACATCTTTAGAATAATGTATATCTTACTTTTGAAAAGAAATAGATAATTAAAACATTTCAGCATACATTAATTCAAAATTAGTATTCCCTCAGTTCCAAGTTATGTTGACACTATTTCTTTATTAGTTCATACAAAAAGATGACATATTCTATATATCAAAATAAATTAAATATGAACTTCCCTAATGAGAAGCTTCTATAGCCTCACAAATGTTATGCCATTTTTTTAGAAGGAAAGCAACAAATGCTACGGCATGTTTTTAAGACCACAAGTATCAAAAGACATATAGCCCCACAAATGTCATAGCATGTTTAAAAGTTAAAAACTATAAAATTAAAAAATCTTTCGTTCTTTCTTAGACTCCATTTCGAGTCAAGCTATGTCACATTAATTGGAACAAAGGGAGTAGCTGGTTTTAAGTGTCACTGAGCATGGGTCATGCTTTAATAGATGTGGCAATGTTGGTATGTGAAGTTCAGGCAATGGGTATCAAGTCATGCTCAATTGTTCTCCACATAGAAGAGTATGAGTTGTTTGGATCATATAAAAACTACATTGCGTGTGGTTCCTTTATCTTCTTTAGTAAACTATGGTATCTTTACTGTAGTCAATCAGCAGCTCTGTTGTATAAGAAAAGAAGAAAGAAGATGACTTTTTTTTCTCTGATGGCCTGCTTTTTCTGACTTGTTTTCCTTTTATGTAATAGCCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAGGTTTGCATTTCTCACATTGAGTTTTTACATCCCCTTTCTACAACTTTTTAGCTTTTGCATCACTTTGTAACACTACAAAGTTAAATAACTTTCGTTGTGCCATTTTCTGCTGATGTTGTCTTTAGGTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAGGTGAATACTCCTACTGATTCCTTATCTTTAATTAATCAGTTTACTTTGACATCTTTGTCTAGTTTTGTCTTCTTGACCTACTTTCATCATATGCTTGTTGTCGCAATCTGACCTATGTTGCTCGGACTCTTCAAATGTCAATGGGTGCGTGCCATATTCTCCAAAAGTAGTGTATTTTTGGAGAACCCGACAAGGGTGTGTCATTGAAAGTGAAGAATCCGCACAACTTATAATCTGACAACTTAAGACTTAGAAAGACCCAAGCTGGTTGGAATGGGCTCGCTCAAGTACCTAAAAGTGATGACAATTTTTTTATCATCTATGATTAGTCATAGTATTTAAAAACGGATAGCTGCAGTGACTTTAGAATTTAGAATGTGACATGTGGTGGAGCTTAACTACATTATGATTCTGCATGTGAATATTGATGTTCCCTATTTCCTGTCACATTTTCCAATAAAAAGCACGCCTTCACCAGATTTATTCTTCTTTAAAAAATAGAATAGATATATCTCTTCCATTCCTTATGGGATGTTTTAGTCTATCATTGGTGAAGTTAACAGATGCTCTGGACTTGTTAAGTTCCACGTTAAGATTGTGATATATATCTCTTCAAAGTATTTAAATTGTGGTCCAATTGTTGGAAATTACACAGAAATTCTTATAGTTTAGGCGTGACAAGAACACTATCCATAATTTTCAACAATATGGCCTCTGCAGTAAAGGGATTCGTGTTGGATATATTCTTCAATTTTCTAAGTCCATAATACACTTTTACTTTACTTAATTGTCTCTCTATGTGGTAATCTTTTGATTCTTCTCTTATTTCCTTTTTTTTCTTGTGTCTTTTCCTCATGACAGACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAGGTTGTTCCTATTCCTGAGTAATTTAGTTTACGCACCCATATTTAGAGAATCCATTTGGTCATTTTCTTCCCATTGATCTTTATCTTGGGTTTTTGGACAATTGCAGGTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATTGTAAGGGTTCCATTTTTTAAGCCAAATGATATTCATTTTAAAATTTCATATTTCTTGGGTTGCTTTTAAAAGTACTTTAAAGCTCTTTTCTTCTCGTTCCCCCCTCCCTTTTTTTTGGGGTTGGGTGGGTAGGGGGCTGATACAATAGTAAGGTACTACTAGTCTGGAATACTGTCACTTCGTATTAAATTGAATCTGCTCCCCTTCCTACTCCTTGCTTAGAGACGGTAATGCCTTGCAAAAGACTATCAGCTTGCTGAAGTGGTGGGTTGAATTGATGGAAAATAATCTTTTCTTAACGACTTAACCAAATGCTCTTGGTCTAAGATTCCAAGTGATATATAACTTTTACCAAGAGATGGATACGAGTACTACGGGGTTGAAATGCTTGAAAATTATCAATGGAAAAGACTAACCTGAGATATTCCACCTTCAGAAGCAACCTGATGACAATCAGCAATATTGTGGCTGGTTCAAGTGTAAACAGGGATGTATTTCTAAACTAGGGTCTAGAGAGTTCTCCTTTCTGAATAATCCCACTGACGTGTGGTTCCACAATGCCAGTTCTGCTCTATGGAATTTACCATTATGTTACATATAATGTTCTATACTAAATTTATGTCATTTTTCTTGCAAAATTTTTGTGCATTATGATTATGAGTGAGTTTGGTATCGAATAGTCTGATGCATATGTAAGTGGTGTCTTTAAGTTATCGTCTTTTTTCCTCCTCTTTTTAGGTACAGCTCTAATTTGTATATTTGGTTCTAGGTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAGGTAGTGTTTGATCTTGTATGTGTGTGATTCAGATATTTACATGATATGCAAAAAACTGAGAGACATTGCTTTTAGTTATATATGAACTCTCTATCGCTTTTCCATAATGGTGCAAAGTTTGACATACATGTTTTTTGAACTGGTTTAAATGTGAAACTTATGGAGTGATGATAATTATCCAGGAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATGGTAATAGCAAATGTTCTTTATTACATTTCACATTATTATCTTGTGCTGCAAATTCTACTTATTTATGCATGTTTACTAAACTGGTCTAGGAACTACCTGTTTGCTAATTTGACAATTACTTGGATAGGATTTCCATAACATAAGAAATGACTACTGTTTTTGAGCATGGTATTAAGGAAGGAAATAAGTACCTAACATGTCAATTAGAAGGAAGATCAACACAAGGTTGTTACATGCATATGCAGATAATTTCCTAGGCTATCAGAAAATTACAGAACATCCGAATTTAGTACTAGATTTAGATGACAGAATCCATCAAATTGAGGGATTTTCTTGTATAAACTCGAGGAAAAAAAACAAGTTCCATGAGAAACATACAACACTGCAAAAAAGGCATTATGGTTGACAAATCTGTTCTTAGATAGCCACATTTGTCAGAACCAAAAAGAGCATTTTAGACATGTGAGAGATAGCAGTACCTGATGAATAATCGGCTTGCGGACAAGTTGGACACGGCCATTATTTAAAAGAATAGGTTTCCAGACATGTTACTTAGTACATGAACAACTCTCTATGTTTTACAATAAAACTTTGCATGAGGACTCTTCCGGTCAAAAATGTAGAAACGAGGCCTCTGTTATTCGTCTAGCAGATGAAAAAGAGCAAGACAGTTGCAACACTTCTGAAATTACTCTTAAAGAGAAGCATAAAAGTGATTTTTAACATTTACAATGTGATTTGCAGGTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATGCACGGTGTAACTGAAGATCAGCTGAACTGACAGATGAACGGCCACATTATTTTGCTGCAGAGTAAACTAATGATATTGTCAAAGGCTCGTTTAGCTATCGATAACTATGGA-TTTCTTTTATTTTGAAAAT</genome_strand>
        <mrna_strand>ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG.............................................................................................................................GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG..........................................................................................................GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG......................................................................................................................................................................................GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATGCACGGTGTAACTGAAGATCAGCTGAACTGACAGATGAACGGCCACATTATTTTGCTGCAGAGTAAACTAATGATATTGTCAAAGGCTCGTTTAGCTATCGATAACTATGGATTTTCTTTTATTTTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707688" ref_strand="+" ref_description="SGN-E707688 [FA33CH01]">
      <seq>ccgatttctgattgttttgacagagatgggtgccaaagggaggaagaaaagcataactaagaagttgaagaagggtgctaacgaattctcagcttcttcggtttctaaagataaagctgctgactttctgccattggaaggtgggccggcaagaaaactcccggatactgaagtacgggaaagtaaagcgacaatattgtatattggaaggattccacatggattttatgagaatgaaatggaaggtttctttaagcaatttggtacaattaagaggcttagacttgcaaggaataaaaagacgggaaaatcaaagcattttggcttcatagaatttgagtcccctgaggttgctaaagtggttgcggataccatgcataactatctattatttgagcacttgttgcaagttcgtcttattcctcctgagcatgttcatcccagattgtggaaaggtgtgaaccgctggtacaaaccgttggactgggttaaaattgaaaggaagcgtcaggacaaggaaagaacattggaagagcataataagttggttggagaaattctaaaacgtgacaaaaagaggcgaaagaggatcgaggcagctgggattgattacgagtgcccagaaatggtgggtgcaattcaggctgcaccaaagaagatcaggttcactgattagatctttataagtatagctcgtgaacgaaatagtatctatggcgacaagtagattactatgtgtatgcacggtgtaactgaagatcagctgaactgacagatgaacggccacattattttgctgcagagtaaactaatgatattgtcaaaggctcgtttagctatcgataactatggatttcttttattttgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="7141" stop="1343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6840" g_stop="6721" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="130" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5171" g_stop="5057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="245" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4931" g_stop="4876" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="301" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4014" g_stop="3967" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="349" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106">
            <donor d_prob="0.390" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3860" g_stop="3763" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="447" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2993" g_stop="2924" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="517" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2741" g_stop="2631" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="628" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2630" i_stop="1887" i_length="744">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1886" g_stop="1643" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="872" r_length="244" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E707688" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6840" e_stop="6721"/>
          <exon e_start="5171" e_stop="5057"/>
          <exon e_start="4931" e_stop="4876"/>
          <exon e_start="4014" e_stop="3967"/>
          <exon e_start="3860" e_stop="3763"/>
          <exon e_start="2993" e_stop="2924"/>
          <exon e_start="2741" e_stop="2631"/>
          <exon e_start="1886" e_stop="1643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTGGTATGTTTCTGGTATATTAAAGTTAGTAAAGCTCCTCAATGCTCAAGAAGTTCTTAGAATGAGAGAACCGTTTAGAACAATTTTTCCCTTCATGTTTTTAGTTTATATCTTTCCCTCTTTGAGCCAAAGGGTCTAGGAAACCGCCTCTCTACCTTCTCAAGGTAGGGGTATGGTCTGCATGCACTCTACCTTCTCACGACCTCACCTGTGGGATTATACTGGATTTGTTGTTGTTGTTTTTAGTTTCTTTCATATTACATGTTAGTTTGTCTTTTTGGTATATATGTTTGAAATGACTCAATGTGTGTTGTGATGGTTGGAAACTCTATCTATTTGGTTGTTGGGAGATCGTTAGAAGATGTTTGCTATGTAGGACTGGAAAGGGAACTTAAAGGAAAAAATGGAGTAACTGTTTTGTTGGCTAATAGTTTCCCAGACATTTGATGGAACTAGCCACCATTCTTAATTACTTATAGGTCAGTTCTAATAGAAGTAGCCTATATGCATATAATATCCTGGTAAAGCATGTAAAATCTTCATCTTACAATTGAGATAGAATTGTTGACTTTAGAACATTTGTAAAAGAAAAATAGTTTCCTGGTTCTCTAATAGTGCTTCATGATCTAAAACAAAAAGATGTAGTTGCATATAAGGCGGAGTACTTGGCACGAGCTGGCATGGACACCATTATTTTTTCAAAAAGAAGATATTATGTAGTACTTGAAATATTTTAGTTCTTTACGAGAGTGATATCATGTAAATTTTAGTTTGAAACTCTCACGAGAGATTCCTGATTAAAAAACATTTGGATATAATAATGGAAAACTAAATAGATAACTGAAACATCTTTAGAATAATGTATATCTTACTTTTGAAAAGAAATAGATAATTAAAACATTTCAGCATACATTAATTCAAAATTAGTATTCCCTCAGTTCCAAGTTATGTTGACACTATTTCTTTATTAGTTCATACAAAAAGATGACATATTCTATATATCAAAATAAATTAAATATGAACTTCCCTAATGAGAAGCTTCTATAGCCTCACAAATGTTATGCCATTTTTTTAGAAGGAAAGCAACAAATGCTACGGCATGTTTTTAAGACCACAAGTATCAAAAGACATATAGCCCCACAAATGTCATAGCATGTTTAAAAGTTAAAAACTATAAAATTAAAAAATCTTTCGTTCTTTCTTAGACTCCATTTCGAGTCAAGCTATGTCACATTAATTGGAACAAAGGGAGTAGCTGGTTTTAAGTGTCACTGAGCATGGGTCATGCTTTAATAGATGTGGCAATGTTGGTATGTGAAGTTCAGGCAATGGGTATCAAGTCATGCTCAATTGTTCTCCACATAGAAGAGTATGAGTTGTTTGGATCATATAAAAACTACATTGCGTGTGGTTCCTTTATCTTCTTTAGTAAACTATGGTATCTTTACTGTAGTCAATCAGCAGCTCTGTTGTATAAGAAAAGAAGAAAGAAGATGACTTTTTTTTCTCTGATGGCCTGCTTTTTCTGACTTGTTTTCCTTTTATGTAATAGCCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAGGTTTGCATTTCTCACATTGAGTTTTTACATCCCCTTTCTACAACTTTTTAGCTTTTGCATCACTTTGTAACACTACAAAGTTAAATAACTTTCGTTGTGCCATTTTCTGCTGATGTTGTCTTTAGGTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAGGTGAATACTCCTACTGATTCCTTATCTTTAATTAATCAGTTTACTTTGACATCTTTGTCTAGTTTTGTCTTCTTGACCTACTTTCATCATATGCTTGTTGTCGCAATCTGACCTATGTTGCTCGGACTCTTCAAATGTCAATGGGTGCGTGCCATATTCTCCAAAAGTAGTGTATTTTTGGAGAACCCGACAAGGGTGTGTCATTGAAAGTGAAGAATCCGCACAACTTATAATCTGACAACTTAAGACTTAGAAAGACCCAAGCTGGTTGGAATGGGCTCGCTCAAGTACCTAAAAGTGATGACAATTTTTTTATCATCTATGATTAGTCATAGTATTTAAAAACGGATAGCTGCAGTGACTTTAGAATTTAGAATGTGACATGTGGTGGAGCTTAACTACATTATGATTCTGCATGTGAATATTGATGTTCCCTATTTCCTGTCACATTTTCCAATAAAAAGCACGCCTTCACCAGATTTATTCTTCTTTAAAAAATAGAATAGATATATCTCTTCCATTCCTTATGGGATGTTTTAGTCTATCATTGGTGAAGTTAACAGATGCTCTGGACTTGTTAAGTTCCACGTTAAGATTGTGATATATATCTCTTCAAAGTATTTAAATTGTGGTCCAATTGTTGGAAATTACACAGAAATTCTTATAGTTTAGGCGTGACAAGAACACTATCCATAATTTTCAACAATATGGCCTCTGCAGTAAAGGGATTCGTGTTGGATATATTCTTCAATTTTCTAAGTCCATAATACACTTTTACTTTACTTAATTGTCTCTCTATGTGGTAATCTTTTGATTCTTCTCTTATTTCCTTTTTTTTCTTGTGTCTTTTCCTCATGACAGACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAGGTTGTTCCTATTCCTGAGTAATTTAGTTTACGCACCCATATTTAGAGAATCCATTTGGTCATTTTCTTCCCATTGATCTTTATCTTGGGTTTTTGGACAATTGCAGGTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATTGTAAGGGTTCCATTTTTTAAGCCAAATGATATTCATTTTAAAATTTCATATTTCTTGGGTTGCTTTTAAAAGTACTTTAAAGCTCTTTTCTTCTCGTTCCCCCCTCCCTTTTTTTTGGGGTTGGGTGGGTAGGGGGCTGATACAATAGTAAGGTACTACTAGTCTGGAATACTGTCACTTCGTATTAAATTGAATCTGCTCCCCTTCCTACTCCTTGCTTAGAGACGGTAATGCCTTGCAAAAGACTATCAGCTTGCTGAAGTGGTGGGTTGAATTGATGGAAAATAATCTTTTCTTAACGACTTAACCAAATGCTCTTGGTCTAAGATTCCAAGTGATATATAACTTTTACCAAGAGATGGATACGAGTACTACGGGGTTGAAATGCTTGAAAATTATCAATGGAAAAGACTAACCTGAGATATTCCACCTTCAGAAGCAACCTGATGACAATCAGCAATATTGTGGCTGGTTCAAGTGTAAACAGGGATGTATTTCTAAACTAGGGTCTAGAGAGTTCTCCTTTCTGAATAATCCCACTGACGTGTGGTTCCACAATGCCAGTTCTGCTCTATGGAATTTACCATTATGTTACATATAATGTTCTATACTAAATTTATGTCATTTTTCTTGCAAAATTTTTGTGCATTATGATTATGAGTGAGTTTGGTATCGAATAGTCTGATGCATATGTAAGTGGTGTCTTTAAGTTATCGTCTTTTTTCCTCCTCTTTTTAGGTACAGCTCTAATTTGTATATTTGGTTCTAGGTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAGGTAGTGTTTGATCTTGTATGTGTGTGATTCAGATATTTACATGATATGCAAAAAACTGAGAGACATTGCTTTTAGTTATATATGAACTCTCTATCGCTTTTCCATAATGGTGCAAAGTTTGACATACATGTTTTTTGAACTGGTTTAAATGTGAAACTTATGGAGTGATGATAATTATCCAGGAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATGGTAATAGCAAATGTTCTTTATTACATTTCACATTATTATCTTGTGCTGCAAATTCTACTTATTTATGCATGTTTACTAAACTGGTCTAGGAACTACCTGTTTGCTAATTTGACAATTACTTGGATAGGATTTCCATAACATAAGAAATGACTACTGTTTTTGAGCATGGTATTAAGGAAGGAAATAAGTACCTAACATGTCAATTAGAAGGAAGATCAACACAAGGTTGTTACATGCATATGCAGATAATTTCCTAGGCTATCAGAAAATTACAGAACATCCGAATTTAGTACTAGATTTAGATGACAGAATCCATCAAATTGAGGGATTTTCTTGTATAAACTCGAGGAAAAAAAACAAGTTCCATGAGAAACATACAACACTGCAAAAAAGGCATTATGGTTGACAAATCTGTTCTTAGATAGCCACATTTGTCAGAACCAAAAAGAGCATTTTAGACATGTGAGAGATAGCAGTACCTGATGAATAATCGGCTTGCGGACAAGTTGGACACGGCCATTATTTAAAAGAATAGGTTTCCAGACATGTTACTTAGTACATGAACAACTCTCTATGTTTTACAATAAAACTTTGCATGAGGACTCTTCCGGTCAAAAATGTAGAAACGAGGCCTCTGTTATTCGTCTAGCAGATGAAAAAGAGCAAGACAGTTGCAACACTTCTGAAATTACTCTTAAAGAGAAGCATAAAAGTGATTTTTAACATTTACAATGTGATTTGCAGGTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATGCACGGTGTAACTGAAGATCAGCTGAACTGACAGATGAACGGCCACATTATTTTGCTGCAGAGTAAACTAATGATATTGTCAAAGGCTCGTTTAGCTATCGATAACTATGGATTTCTTTTATTTTGAAAAT</genome_strand>
        <mrna_strand>ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG.............................................................................................................................GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG..........................................................................................................GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG......................................................................................................................................................................................GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATGCACGGTGTAACTGAAGATCAGCTGAACTGACAGATGAACGGCCACATTATTTTGCTGCAGAGTAAACTAATGATATTGTCAAAGGCTCGTTTAGCTATCGATAACTATGGATTTCTTTTATTTTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721392" ref_strand="+" ref_description="SGN-E721392 [FC13DA05]">
      <seq>aatcggccgaattgagcctatattcctgtgaccgccactctccgctttactcctcctctatatctttttccggcggccggcagctccttcttcagcttcgtgaattctgattgttttgacagagatgggtgccaaagggaggaagaaaagcataactaagaagttgaagaagggtgctaacgaattctcagcttcttcggtttctaaagataaagctgctgactttctgccattggaaggtgggccggcaagaaaactcccggatactgaagtacgggaaagtaaagcgacaatattgtatattggaaggattccacatggattttatgagaatgaaatggaaggtttctttaagcaatttggtacaattaagaggcttagacttgcaaggaataaaaagacgggaaaatcaaagcattttggcttcatagaatttgagtcccctgaggttgctaaagtggttgcggataccatgcataactatctattatttgagcacttgttgcaagttcgtcttattcctcctgagcatgttcatcccagattgtggaaaggtgtgaaccgctggtacaaaccgttggactgggttaaaattgaaaggaagcgtcaggacaaggaaagaacattggaagagcataataagttggttggagaaattctaaaacgtgacaaaaagaggcgaaagaggatcgaggcagctgggattgattacgagtgcccagaaatggtgggtgcaattcaggctgcaccaaagaagatcaggttcactgattagatctttataagtatagctcgtgaacgaaatagtatctatggcngacagtagattactatgtgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="8221" stop="1473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7917" g_stop="7825" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="109" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7824" i_stop="6841" i_length="984">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6840" g_stop="6721" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="229" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="5057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="344" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4931" g_stop="4876" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="400" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4014" g_stop="3967" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="448" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106">
            <donor d_prob="0.390" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3860" g_stop="3763" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="546" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2993" g_stop="2924" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="616" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2741" g_stop="2631" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="727" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="2630" i_stop="1887" i_length="744">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1886" g_stop="1773" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="841" r_length="114" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E721392" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7917" e_stop="7825"/>
          <exon e_start="6840" e_stop="6721"/>
          <exon e_start="5171" e_stop="5057"/>
          <exon e_start="4931" e_stop="4876"/>
          <exon e_start="4014" e_stop="3967"/>
          <exon e_start="3860" e_stop="3763"/>
          <exon e_start="2993" e_stop="2924"/>
          <exon e_start="2741" e_stop="2631"/>
          <exon e_start="1886" e_stop="1773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATATTCCTGTGACCGCCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTGGTAATTAGTTTCATCTATACTTATCTATAATTGCAATGAACAGAGCAAATTTAGCTGTGTTTTTAAAATTAGTTAAATTGATGCTATTCTTTTCGTTACCAATGTGAATAATTTTGGCTGTTTTTCATGGTTGTTTATGATTTTTACATGTTTATTTGAAGTCAGAATACATAAAAAGACACTCAAAGTCGGTTTCAATTGTCATGCAAACACTACATCTTTAGTATGCACGTCTATACATCTCAATCTGACTTTACTGTGGCAGTTGAACACTGTAGTTTTGTTACAAAATGATCATCTTGATACTTCCAAAATTTAGTGTAACGTCAGTGTGGGGTGTCCAGGAGACAGAGTGGGGAAGAGTTTGAGTGGTGTCCAGACTTTGTTATATCGAAGTTAAAGTTTGAGAGTTCTACATATTAATTTGAAGTTGTACTGGCTGTCCATTTGATCAATAGTTCTAAATTTGTGATCGTAGGATTTCTAATTTAACTCATGAATCTCTTTAGGTTGATCAAGGATTTTTATCTAGGTATGATTTGCAATTTTCTGGCTACCTAATAGTGGCTCTTTTTTCAACCAACAAAAGTTGGGGTTAGGCAGGTAGAGACGTACACAAACCTTACCCATACCTTGGGAGATATAGAGTTGGTTTCTGATACACCCTCGACTCCAGGAAATAGTGGCTCTTTTTTCTAAGTTTAAGATTTTACATGTGAATTCACATTTCTAATCGCTATCCATTCGATAAATAGGTCCATATTTGTGATTGGTTGTATTTCTAATGAAAATTTTAGGCAGACTAGGATTTTTCTATATAGGCAGAATTTGCATTTTCCTGGCTACCTATCCAAATAATAGTGGCTCTTTTGTCATTCTGTGATTTGCATTTTTACTTGCTACCCATGTGATAAAATGAGTCTAAAATGGTCAACATGTCATACTTCCTGTGTAAGTAATGAGTTTTCTTTTGTGTCTACCAAGATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTGGTATGTTTCTGGTATATTAAAGTTAGTAAAGCTCCTCAATGCTCAAGAAGTTCTTAGAATGAGAGAACCGTTTAGAACAATTTTTCCCTTCATGTTTTTAGTTTATATCTTTCCCTCTTTGAGCCAAAGGGTCTAGGAAACCGCCTCTCTACCTTCTCAAGGTAGGGGTATGGTCTGCATGCACTCTACCTTCTCACGACCTCACCTGTGGGATTATACTGGATTTGTTGTTGTTGTTTTTAGTTTCTTTCATATTACATGTTAGTTTGTCTTTTTGGTATATATGTTTGAAATGACTCAATGTGTGTTGTGATGGTTGGAAACTCTATCTATTTGGTTGTTGGGAGATCGTTAGAAGATGTTTGCTATGTAGGACTGGAAAGGGAACTTAAAGGAAAAAATGGAGTAACTGTTTTGTTGGCTAATAGTTTCCCAGACATTTGATGGAACTAGCCACCATTCTTAATTACTTATAGGTCAGTTCTAATAGAAGTAGCCTATATGCATATAATATCCTGGTAAAGCATGTAAAATCTTCATCTTACAATTGAGATAGAATTGTTGACTTTAGAACATTTGTAAAAGAAAAATAGTTTCCTGGTTCTCTAATAGTGCTTCATGATCTAAAACAAAAAGATGTAGTTGCATATAAGGCGGAGTACTTGGCACGAGCTGGCATGGACACCATTATTTTTTCAAAAAGAAGATATTATGTAGTACTTGAAATATTTTAGTTCTTTACGAGAGTGATATCATGTAAATTTTAGTTTGAAACTCTCACGAGAGATTCCTGATTAAAAAACATTTGGATATAATAATGGAAAACTAAATAGATAACTGAAACATCTTTAGAATAATGTATATCTTACTTTTGAAAAGAAATAGATAATTAAAACATTTCAGCATACATTAATTCAAAATTAGTATTCCCTCAGTTCCAAGTTATGTTGACACTATTTCTTTATTAGTTCATACAAAAAGATGACATATTCTATATATCAAAATAAATTAAATATGAACTTCCCTAATGAGAAGCTTCTATAGCCTCACAAATGTTATGCCATTTTTTTAGAAGGAAAGCAACAAATGCTACGGCATGTTTTTAAGACCACAAGTATCAAAAGACATATAGCCCCACAAATGTCATAGCATGTTTAAAAGTTAAAAACTATAAAATTAAAAAATCTTTCGTTCTTTCTTAGACTCCATTTCGAGTCAAGCTATGTCACATTAATTGGAACAAAGGGAGTAGCTGGTTTTAAGTGTCACTGAGCATGGGTCATGCTTTAATAGATGTGGCAATGTTGGTATGTGAAGTTCAGGCAATGGGTATCAAGTCATGCTCAATTGTTCTCCACATAGAAGAGTATGAGTTGTTTGGATCATATAAAAACTACATTGCGTGTGGTTCCTTTATCTTCTTTAGTAAACTATGGTATCTTTACTGTAGTCAATCAGCAGCTCTGTTGTATAAGAAAAGAAGAAAGAAGATGACTTTTTTTTCTCTGATGGCCTGCTTTTTCTGACTTGTTTTCCTTTTATGTAATAGCCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAGGTTTGCATTTCTCACATTGAGTTTTTACATCCCCTTTCTACAACTTTTTAGCTTTTGCATCACTTTGTAACACTACAAAGTTAAATAACTTTCGTTGTGCCATTTTCTGCTGATGTTGTCTTTAGGTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAGGTGAATACTCCTACTGATTCCTTATCTTTAATTAATCAGTTTACTTTGACATCTTTGTCTAGTTTTGTCTTCTTGACCTACTTTCATCATATGCTTGTTGTCGCAATCTGACCTATGTTGCTCGGACTCTTCAAATGTCAATGGGTGCGTGCCATATTCTCCAAAAGTAGTGTATTTTTGGAGAACCCGACAAGGGTGTGTCATTGAAAGTGAAGAATCCGCACAACTTATAATCTGACAACTTAAGACTTAGAAAGACCCAAGCTGGTTGGAATGGGCTCGCTCAAGTACCTAAAAGTGATGACAATTTTTTTATCATCTATGATTAGTCATAGTATTTAAAAACGGATAGCTGCAGTGACTTTAGAATTTAGAATGTGACATGTGGTGGAGCTTAACTACATTATGATTCTGCATGTGAATATTGATGTTCCCTATTTCCTGTCACATTTTCCAATAAAAAGCACGCCTTCACCAGATTTATTCTTCTTTAAAAAATAGAATAGATATATCTCTTCCATTCCTTATGGGATGTTTTAGTCTATCATTGGTGAAGTTAACAGATGCTCTGGACTTGTTAAGTTCCACGTTAAGATTGTGATATATATCTCTTCAAAGTATTTAAATTGTGGTCCAATTGTTGGAAATTACACAGAAATTCTTATAGTTTAGGCGTGACAAGAACACTATCCATAATTTTCAACAATATGGCCTCTGCAGTAAAGGGATTCGTGTTGGATATATTCTTCAATTTTCTAAGTCCATAATACACTTTTACTTTACTTAATTGTCTCTCTATGTGGTAATCTTTTGATTCTTCTCTTATTTCCTTTTTTTTCTTGTGTCTTTTCCTCATGACAGACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAGGTTGTTCCTATTCCTGAGTAATTTAGTTTACGCACCCATATTTAGAGAATCCATTTGGTCATTTTCTTCCCATTGATCTTTATCTTGGGTTTTTGGACAATTGCAGGTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATTGTAAGGGTTCCATTTTTTAAGCCAAATGATATTCATTTTAAAATTTCATATTTCTTGGGTTGCTTTTAAAAGTACTTTAAAGCTCTTTTCTTCTCGTTCCCCCCTCCCTTTTTTTTGGGGTTGGGTGGGTAGGGGGCTGATACAATAGTAAGGTACTACTAGTCTGGAATACTGTCACTTCGTATTAAATTGAATCTGCTCCCCTTCCTACTCCTTGCTTAGAGACGGTAATGCCTTGCAAAAGACTATCAGCTTGCTGAAGTGGTGGGTTGAATTGATGGAAAATAATCTTTTCTTAACGACTTAACCAAATGCTCTTGGTCTAAGATTCCAAGTGATATATAACTTTTACCAAGAGATGGATACGAGTACTACGGGGTTGAAATGCTTGAAAATTATCAATGGAAAAGACTAACCTGAGATATTCCACCTTCAGAAGCAACCTGATGACAATCAGCAATATTGTGGCTGGTTCAAGTGTAAACAGGGATGTATTTCTAAACTAGGGTCTAGAGAGTTCTCCTTTCTGAATAATCCCACTGACGTGTGGTTCCACAATGCCAGTTCTGCTCTATGGAATTTACCATTATGTTACATATAATGTTCTATACTAAATTTATGTCATTTTTCTTGCAAAATTTTTGTGCATTATGATTATGAGTGAGTTTGGTATCGAATAGTCTGATGCATATGTAAGTGGTGTCTTTAAGTTATCGTCTTTTTTCCTCCTCTTTTTAGGTACAGCTCTAATTTGTATATTTGGTTCTAGGTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAGGTAGTGTTTGATCTTGTATGTGTGTGATTCAGATATTTACATGATATGCAAAAAACTGAGAGACATTGCTTTTAGTTATATATGAACTCTCTATCGCTTTTCCATAATGGTGCAAAGTTTGACATACATGTTTTTTGAACTGGTTTAAATGTGAAACTTATGGAGTGATGATAATTATCCAGGAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATGGTAATAGCAAATGTTCTTTATTACATTTCACATTATTATCTTGTGCTGCAAATTCTACTTATTTATGCATGTTTACTAAACTGGTCTAGGAACTACCTGTTTGCTAATTTGACAATTACTTGGATAGGATTTCCATAACATAAGAAATGACTACTGTTTTTGAGCATGGTATTAAGGAAGGAAATAAGTACCTAACATGTCAATTAGAAGGAAGATCAACACAAGGTTGTTACATGCATATGCAGATAATTTCCTAGGCTATCAGAAAATTACAGAACATCCGAATTTAGTACTAGATTTAGATGACAGAATCCATCAAATTGAGGGATTTTCTTGTATAAACTCGAGGAAAAAAAACAAGTTCCATGAGAAACATACAACACTGCAAAAAAGGCATTATGGTTGACAAATCTGTTCTTAGATAGCCACATTTGTCAGAACCAAAAAGAGCATTTTAGACATGTGAGAGATAGCAGTACCTGATGAATAATCGGCTTGCGGACAAGTTGGACACGGCCATTATTTAAAAGAATAGGTTTCCAGACATGTTACTTAGTACATGAACAACTCTCTATGTTTTACAATAAAACTTTGCATGAGGACTCTTCCGGTCAAAAATGTAGAAACGAGGCCTCTGTTATTCGTCTAGCAGATGAAAAAGAGCAAGACAGTTGCAACACTTCTGAAATTACTCTTAAAGAGAAGCATAAAAGTGATTTTTAACATTTACAATGTGATTTGCAGGTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATG</genome_strand>
        <mrna_strand>CCTATATTCCTGTGACCGCCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG.............................................................................................................................GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG..........................................................................................................GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG......................................................................................................................................................................................GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCNGACAGTAGATTACTATGTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326151" ref_strand="+" ref_description="SGN-E326151 [cTOC-16-C7]">
      <seq>gccactctccgctttactcctcctctatatctttttccggcggccggcagctccttcttcagcttcgtgaattctgattgttttgacagagatgggtgccaaagggaggaagaaaagcataactaagaagttgaagaagggtgctaacgaattctcagcttcttcggtttctaaagataaagctgctgactttctgccattggaaggtgggccggcaagaaaactcccggatactgaagtacgggaaagtaaagcgacaatattgtatattggaaggattccacatggattttatgagaatgaaatggaaggtttctttaagcaatttggtacaattaagaggcttagacttgcaaggaataaaaagacgggaaaatcaaagcattttggcttcatagaatttgagtcccctgaggttgctaaagtggttgcggataccatgcataactatctattatttgagcacttgttgcaagttcgtcttattcctcctgagcatgttcatcccagattgtggaaaggtgtgaaccgctggtacaaaccgttggactgggttaaaattgaaaggaagcgtcaggacaaggaaagaacattggaagagcataataagttggttggagaaattctaaaacgtgacaaaaagaggcgaaagaggatcgaggcagctgggattgattacgagtgcccagaaatggtgggtgcaattcaggctgcaccaaagaagatcaggttcactgattagatctttataagtatagctcgtgaacgaaatagtatctatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="8200" stop="1498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7900" g_stop="7825" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7824" i_stop="6841" i_length="984">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6840" g_stop="6721" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="196" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="5057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="311" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4931" g_stop="4876" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="367" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4014" g_stop="3967" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="415" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106">
            <donor d_prob="0.390" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3860" g_stop="3763" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="513" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2993" g_stop="2924" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="583" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2741" g_stop="2631" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="694" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="2630" i_stop="1887" i_length="744">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1886" g_stop="1796" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="785" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E326151" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7900" e_stop="7825"/>
          <exon e_start="6840" e_stop="6721"/>
          <exon e_start="5171" e_stop="5057"/>
          <exon e_start="4931" e_stop="4876"/>
          <exon e_start="4014" e_stop="3967"/>
          <exon e_start="3860" e_stop="3763"/>
          <exon e_start="2993" e_stop="2924"/>
          <exon e_start="2741" e_stop="2631"/>
          <exon e_start="1886" e_stop="1796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTGGTAATTAGTTTCATCTATACTTATCTATAATTGCAATGAACAGAGCAAATTTAGCTGTGTTTTTAAAATTAGTTAAATTGATGCTATTCTTTTCGTTACCAATGTGAATAATTTTGGCTGTTTTTCATGGTTGTTTATGATTTTTACATGTTTATTTGAAGTCAGAATACATAAAAAGACACTCAAAGTCGGTTTCAATTGTCATGCAAACACTACATCTTTAGTATGCACGTCTATACATCTCAATCTGACTTTACTGTGGCAGTTGAACACTGTAGTTTTGTTACAAAATGATCATCTTGATACTTCCAAAATTTAGTGTAACGTCAGTGTGGGGTGTCCAGGAGACAGAGTGGGGAAGAGTTTGAGTGGTGTCCAGACTTTGTTATATCGAAGTTAAAGTTTGAGAGTTCTACATATTAATTTGAAGTTGTACTGGCTGTCCATTTGATCAATAGTTCTAAATTTGTGATCGTAGGATTTCTAATTTAACTCATGAATCTCTTTAGGTTGATCAAGGATTTTTATCTAGGTATGATTTGCAATTTTCTGGCTACCTAATAGTGGCTCTTTTTTCAACCAACAAAAGTTGGGGTTAGGCAGGTAGAGACGTACACAAACCTTACCCATACCTTGGGAGATATAGAGTTGGTTTCTGATACACCCTCGACTCCAGGAAATAGTGGCTCTTTTTTCTAAGTTTAAGATTTTACATGTGAATTCACATTTCTAATCGCTATCCATTCGATAAATAGGTCCATATTTGTGATTGGTTGTATTTCTAATGAAAATTTTAGGCAGACTAGGATTTTTCTATATAGGCAGAATTTGCATTTTCCTGGCTACCTATCCAAATAATAGTGGCTCTTTTGTCATTCTGTGATTTGCATTTTTACTTGCTACCCATGTGATAAAATGAGTCTAAAATGGTCAACATGTCATACTTCCTGTGTAAGTAATGAGTTTTCTTTTGTGTCTACCAAGATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTGGTATGTTTCTGGTATATTAAAGTTAGTAAAGCTCCTCAATGCTCAAGAAGTTCTTAGAATGAGAGAACCGTTTAGAACAATTTTTCCCTTCATGTTTTTAGTTTATATCTTTCCCTCTTTGAGCCAAAGGGTCTAGGAAACCGCCTCTCTACCTTCTCAAGGTAGGGGTATGGTCTGCATGCACTCTACCTTCTCACGACCTCACCTGTGGGATTATACTGGATTTGTTGTTGTTGTTTTTAGTTTCTTTCATATTACATGTTAGTTTGTCTTTTTGGTATATATGTTTGAAATGACTCAATGTGTGTTGTGATGGTTGGAAACTCTATCTATTTGGTTGTTGGGAGATCGTTAGAAGATGTTTGCTATGTAGGACTGGAAAGGGAACTTAAAGGAAAAAATGGAGTAACTGTTTTGTTGGCTAATAGTTTCCCAGACATTTGATGGAACTAGCCACCATTCTTAATTACTTATAGGTCAGTTCTAATAGAAGTAGCCTATATGCATATAATATCCTGGTAAAGCATGTAAAATCTTCATCTTACAATTGAGATAGAATTGTTGACTTTAGAACATTTGTAAAAGAAAAATAGTTTCCTGGTTCTCTAATAGTGCTTCATGATCTAAAACAAAAAGATGTAGTTGCATATAAGGCGGAGTACTTGGCACGAGCTGGCATGGACACCATTATTTTTTCAAAAAGAAGATATTATGTAGTACTTGAAATATTTTAGTTCTTTACGAGAGTGATATCATGTAAATTTTAGTTTGAAACTCTCACGAGAGATTCCTGATTAAAAAACATTTGGATATAATAATGGAAAACTAAATAGATAACTGAAACATCTTTAGAATAATGTATATCTTACTTTTGAAAAGAAATAGATAATTAAAACATTTCAGCATACATTAATTCAAAATTAGTATTCCCTCAGTTCCAAGTTATGTTGACACTATTTCTTTATTAGTTCATACAAAAAGATGACATATTCTATATATCAAAATAAATTAAATATGAACTTCCCTAATGAGAAGCTTCTATAGCCTCACAAATGTTATGCCATTTTTTTAGAAGGAAAGCAACAAATGCTACGGCATGTTTTTAAGACCACAAGTATCAAAAGACATATAGCCCCACAAATGTCATAGCATGTTTAAAAGTTAAAAACTATAAAATTAAAAAATCTTTCGTTCTTTCTTAGACTCCATTTCGAGTCAAGCTATGTCACATTAATTGGAACAAAGGGAGTAGCTGGTTTTAAGTGTCACTGAGCATGGGTCATGCTTTAATAGATGTGGCAATGTTGGTATGTGAAGTTCAGGCAATGGGTATCAAGTCATGCTCAATTGTTCTCCACATAGAAGAGTATGAGTTGTTTGGATCATATAAAAACTACATTGCGTGTGGTTCCTTTATCTTCTTTAGTAAACTATGGTATCTTTACTGTAGTCAATCAGCAGCTCTGTTGTATAAGAAAAGAAGAAAGAAGATGACTTTTTTTTCTCTGATGGCCTGCTTTTTCTGACTTGTTTTCCTTTTATGTAATAGCCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAGGTTTGCATTTCTCACATTGAGTTTTTACATCCCCTTTCTACAACTTTTTAGCTTTTGCATCACTTTGTAACACTACAAAGTTAAATAACTTTCGTTGTGCCATTTTCTGCTGATGTTGTCTTTAGGTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAGGTGAATACTCCTACTGATTCCTTATCTTTAATTAATCAGTTTACTTTGACATCTTTGTCTAGTTTTGTCTTCTTGACCTACTTTCATCATATGCTTGTTGTCGCAATCTGACCTATGTTGCTCGGACTCTTCAAATGTCAATGGGTGCGTGCCATATTCTCCAAAAGTAGTGTATTTTTGGAGAACCCGACAAGGGTGTGTCATTGAAAGTGAAGAATCCGCACAACTTATAATCTGACAACTTAAGACTTAGAAAGACCCAAGCTGGTTGGAATGGGCTCGCTCAAGTACCTAAAAGTGATGACAATTTTTTTATCATCTATGATTAGTCATAGTATTTAAAAACGGATAGCTGCAGTGACTTTAGAATTTAGAATGTGACATGTGGTGGAGCTTAACTACATTATGATTCTGCATGTGAATATTGATGTTCCCTATTTCCTGTCACATTTTCCAATAAAAAGCACGCCTTCACCAGATTTATTCTTCTTTAAAAAATAGAATAGATATATCTCTTCCATTCCTTATGGGATGTTTTAGTCTATCATTGGTGAAGTTAACAGATGCTCTGGACTTGTTAAGTTCCACGTTAAGATTGTGATATATATCTCTTCAAAGTATTTAAATTGTGGTCCAATTGTTGGAAATTACACAGAAATTCTTATAGTTTAGGCGTGACAAGAACACTATCCATAATTTTCAACAATATGGCCTCTGCAGTAAAGGGATTCGTGTTGGATATATTCTTCAATTTTCTAAGTCCATAATACACTTTTACTTTACTTAATTGTCTCTCTATGTGGTAATCTTTTGATTCTTCTCTTATTTCCTTTTTTTTCTTGTGTCTTTTCCTCATGACAGACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAGGTTGTTCCTATTCCTGAGTAATTTAGTTTACGCACCCATATTTAGAGAATCCATTTGGTCATTTTCTTCCCATTGATCTTTATCTTGGGTTTTTGGACAATTGCAGGTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATTGTAAGGGTTCCATTTTTTAAGCCAAATGATATTCATTTTAAAATTTCATATTTCTTGGGTTGCTTTTAAAAGTACTTTAAAGCTCTTTTCTTCTCGTTCCCCCCTCCCTTTTTTTTGGGGTTGGGTGGGTAGGGGGCTGATACAATAGTAAGGTACTACTAGTCTGGAATACTGTCACTTCGTATTAAATTGAATCTGCTCCCCTTCCTACTCCTTGCTTAGAGACGGTAATGCCTTGCAAAAGACTATCAGCTTGCTGAAGTGGTGGGTTGAATTGATGGAAAATAATCTTTTCTTAACGACTTAACCAAATGCTCTTGGTCTAAGATTCCAAGTGATATATAACTTTTACCAAGAGATGGATACGAGTACTACGGGGTTGAAATGCTTGAAAATTATCAATGGAAAAGACTAACCTGAGATATTCCACCTTCAGAAGCAACCTGATGACAATCAGCAATATTGTGGCTGGTTCAAGTGTAAACAGGGATGTATTTCTAAACTAGGGTCTAGAGAGTTCTCCTTTCTGAATAATCCCACTGACGTGTGGTTCCACAATGCCAGTTCTGCTCTATGGAATTTACCATTATGTTACATATAATGTTCTATACTAAATTTATGTCATTTTTCTTGCAAAATTTTTGTGCATTATGATTATGAGTGAGTTTGGTATCGAATAGTCTGATGCATATGTAAGTGGTGTCTTTAAGTTATCGTCTTTTTTCCTCCTCTTTTTAGGTACAGCTCTAATTTGTATATTTGGTTCTAGGTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAGGTAGTGTTTGATCTTGTATGTGTGTGATTCAGATATTTACATGATATGCAAAAAACTGAGAGACATTGCTTTTAGTTATATATGAACTCTCTATCGCTTTTCCATAATGGTGCAAAGTTTGACATACATGTTTTTTGAACTGGTTTAAATGTGAAACTTATGGAGTGATGATAATTATCCAGGAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATGGTAATAGCAAATGTTCTTTATTACATTTCACATTATTATCTTGTGCTGCAAATTCTACTTATTTATGCATGTTTACTAAACTGGTCTAGGAACTACCTGTTTGCTAATTTGACAATTACTTGGATAGGATTTCCATAACATAAGAAATGACTACTGTTTTTGAGCATGGTATTAAGGAAGGAAATAAGTACCTAACATGTCAATTAGAAGGAAGATCAACACAAGGTTGTTACATGCATATGCAGATAATTTCCTAGGCTATCAGAAAATTACAGAACATCCGAATTTAGTACTAGATTTAGATGACAGAATCCATCAAATTGAGGGATTTTCTTGTATAAACTCGAGGAAAAAAAACAAGTTCCATGAGAAACATACAACACTGCAAAAAAGGCATTATGGTTGACAAATCTGTTCTTAGATAGCCACATTTGTCAGAACCAAAAAGAGCATTTTAGACATGTGAGAGATAGCAGTACCTGATGAATAATCGGCTTGCGGACAAGTTGGACACGGCCATTATTTAAAAGAATAGGTTTCCAGACATGTTACTTAGTACATGAACAACTCTCTATGTTTTACAATAAAACTTTGCATGAGGACTCTTCCGGTCAAAAATGTAGAAACGAGGCCTCTGTTATTCGTCTAGCAGATGAAAAAGAGCAAGACAGTTGCAACACTTCTGAAATTACTCTTAAAGAGAAGCATAAAAGTGATTTTTAACATTTACAATGTGATTTGCAGGTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCG</genome_strand>
        <mrna_strand>GCCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG.............................................................................................................................GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG..........................................................................................................GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG......................................................................................................................................................................................GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450614" ref_strand="+" ref_description="SGN-E450614 [cSTS-9-J18]">
      <seq>ggcggccggcagctttttcttcagcttcgtaaattctgattgttttgacagagatgggtgccaaagggaggaagaaaagcataactaagaagttgaagaagggtgctagcgaattctctgcttcttcagtttctaaagacaaagctcctgactttttgccattggaaggtgggccggctagaaaactcccggatactgaagtacgggaaagtaaatcgacaatattgtatattggaaggattccacatggattttatgagaatgaaatggaaggtttctttaagcaatttggtacaattaagaggcttagacttgcaaggaataaaaagacaggaaaatcaaagcattttggcttcatagaatttgagtcccctgaggttgctaaagtggttgcggataccatgcataactatctattatttgagcacttgttgcaagttcgtcttattcctcctgagcatgttcatcccaaattgtggaaaggtgtgaaccgctggtacaaaccgttggactgggttaaaattgaaaggaagcgtcaggacaaggaaacaacattggaagagcataataagttggttggagaaattctaaaacgtgacaaaaagaggcgaaagaggatcgaggcagctgggattgattacgagtgcccagaatgggtgggtgcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="7141" stop="2330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6840" g_stop="6721" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="158" r_length="120" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549">
            <donor d_prob="0.959" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5171" g_stop="5057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="273" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4931" g_stop="4876" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="329" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4014" g_stop="3967" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="377" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106">
            <donor d_prob="0.390" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3860" g_stop="3763" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="475" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2993" g_stop="2924" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="545" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2741" g_stop="2636" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="651" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E450614" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6840" e_stop="6721"/>
          <exon e_start="5171" e_stop="5057"/>
          <exon e_start="4931" e_stop="4876"/>
          <exon e_start="4014" e_stop="3967"/>
          <exon e_start="3860" e_stop="3763"/>
          <exon e_start="2993" e_stop="2924"/>
          <exon e_start="2741" e_stop="2636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTGGTATGTTTCTGGTATATTAAAGTTAGTAAAGCTCCTCAATGCTCAAGAAGTTCTTAGAATGAGAGAACCGTTTAGAACAATTTTTCCCTTCATGTTTTTAGTTTATATCTTTCCCTCTTTGAGCCAAAGGGTCTAGGAAACCGCCTCTCTACCTTCTCAAGGTAGGGGTATGGTCTGCATGCACTCTACCTTCTCACGACCTCACCTGTGGGATTATACTGGATTTGTTGTTGTTGTTTTTAGTTTCTTTCATATTACATGTTAGTTTGTCTTTTTGGTATATATGTTTGAAATGACTCAATGTGTGTTGTGATGGTTGGAAACTCTATCTATTTGGTTGTTGGGAGATCGTTAGAAGATGTTTGCTATGTAGGACTGGAAAGGGAACTTAAAGGAAAAAATGGAGTAACTGTTTTGTTGGCTAATAGTTTCCCAGACATTTGATGGAACTAGCCACCATTCTTAATTACTTATAGGTCAGTTCTAATAGAAGTAGCCTATATGCATATAATATCCTGGTAAAGCATGTAAAATCTTCATCTTACAATTGAGATAGAATTGTTGACTTTAGAACATTTGTAAAAGAAAAATAGTTTCCTGGTTCTCTAATAGTGCTTCATGATCTAAAACAAAAAGATGTAGTTGCATATAAGGCGGAGTACTTGGCACGAGCTGGCATGGACACCATTATTTTTTCAAAAAGAAGATATTATGTAGTACTTGAAATATTTTAGTTCTTTACGAGAGTGATATCATGTAAATTTTAGTTTGAAACTCTCACGAGAGATTCCTGATTAAAAAACATTTGGATATAATAATGGAAAACTAAATAGATAACTGAAACATCTTTAGAATAATGTATATCTTACTTTTGAAAAGAAATAGATAATTAAAACATTTCAGCATACATTAATTCAAAATTAGTATTCCCTCAGTTCCAAGTTATGTTGACACTATTTCTTTATTAGTTCATACAAAAAGATGACATATTCTATATATCAAAATAAATTAAATATGAACTTCCCTAATGAGAAGCTTCTATAGCCTCACAAATGTTATGCCATTTTTTTAGAAGGAAAGCAACAAATGCTACGGCATGTTTTTAAGACCACAAGTATCAAAAGACATATAGCCCCACAAATGTCATAGCATGTTTAAAAGTTAAAAACTATAAAATTAAAAAATCTTTCGTTCTTTCTTAGACTCCATTTCGAGTCAAGCTATGTCACATTAATTGGAACAAAGGGAGTAGCTGGTTTTAAGTGTCACTGAGCATGGGTCATGCTTTAATAGATGTGGCAATGTTGGTATGTGAAGTTCAGGCAATGGGTATCAAGTCATGCTCAATTGTTCTCCACATAGAAGAGTATGAGTTGTTTGGATCATATAAAAACTACATTGCGTGTGGTTCCTTTATCTTCTTTAGTAAACTATGGTATCTTTACTGTAGTCAATCAGCAGCTCTGTTGTATAAGAAAAGAAGAAAGAAGATGACTTTTTTTTCTCTGATGGCCTGCTTTTTCTGACTTGTTTTCCTTTTATGTAATAGCCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAGGTTTGCATTTCTCACATTGAGTTTTTACATCCCCTTTCTACAACTTTTTAGCTTTTGCATCACTTTGTAACACTACAAAGTTAAATAACTTTCGTTGTGCCATTTTCTGCTGATGTTGTCTTTAGGTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAGGTGAATACTCCTACTGATTCCTTATCTTTAATTAATCAGTTTACTTTGACATCTTTGTCTAGTTTTGTCTTCTTGACCTACTTTCATCATATGCTTGTTGTCGCAATCTGACCTATGTTGCTCGGACTCTTCAAATGTCAATGGGTGCGTGCCATATTCTCCAAAAGTAGTGTATTTTTGGAGAACCCGACAAGGGTGTGTCATTGAAAGTGAAGAATCCGCACAACTTATAATCTGACAACTTAAGACTTAGAAAGACCCAAGCTGGTTGGAATGGGCTCGCTCAAGTACCTAAAAGTGATGACAATTTTTTTATCATCTATGATTAGTCATAGTATTTAAAAACGGATAGCTGCAGTGACTTTAGAATTTAGAATGTGACATGTGGTGGAGCTTAACTACATTATGATTCTGCATGTGAATATTGATGTTCCCTATTTCCTGTCACATTTTCCAATAAAAAGCACGCCTTCACCAGATTTATTCTTCTTTAAAAAATAGAATAGATATATCTCTTCCATTCCTTATGGGATGTTTTAGTCTATCATTGGTGAAGTTAACAGATGCTCTGGACTTGTTAAGTTCCACGTTAAGATTGTGATATATATCTCTTCAAAGTATTTAAATTGTGGTCCAATTGTTGGAAATTACACAGAAATTCTTATAGTTTAGGCGTGACAAGAACACTATCCATAATTTTCAACAATATGGCCTCTGCAGTAAAGGGATTCGTGTTGGATATATTCTTCAATTTTCTAAGTCCATAATACACTTTTACTTTACTTAATTGTCTCTCTATGTGGTAATCTTTTGATTCTTCTCTTATTTCCTTTTTTTTCTTGTGTCTTTTCCTCATGACAGACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAGGTTGTTCCTATTCCTGAGTAATTTAGTTTACGCACCCATATTTAGAGAATCCATTTGGTCATTTTCTTCCCATTGATCTTTATCTTGGGTTTTTGGACAATTGCAGGTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATTGTAAGGGTTCCATTTTTTAAGCCAAATGATATTCATTTTAAAATTTCATATTTCTTGGGTTGCTTTTAAAAGTACTTTAAAGCTCTTTTCTTCTCGTTCCCCCCTCCCTTTTTTTTGGGGTTGGGTGGGTAGGGGGCTGATACAATAGTAAGGTACTACTAGTCTGGAATACTGTCACTTCGTATTAAATTGAATCTGCTCCCCTTCCTACTCCTTGCTTAGAGACGGTAATGCCTTGCAAAAGACTATCAGCTTGCTGAAGTGGTGGGTTGAATTGATGGAAAATAATCTTTTCTTAACGACTTAACCAAATGCTCTTGGTCTAAGATTCCAAGTGATATATAACTTTTACCAAGAGATGGATACGAGTACTACGGGGTTGAAATGCTTGAAAATTATCAATGGAAAAGACTAACCTGAGATATTCCACCTTCAGAAGCAACCTGATGACAATCAGCAATATTGTGGCTGGTTCAAGTGTAAACAGGGATGTATTTCTAAACTAGGGTCTAGAGAGTTCTCCTTTCTGAATAATCCCACTGACGTGTGGTTCCACAATGCCAGTTCTGCTCTATGGAATTTACCATTATGTTACATATAATGTTCTATACTAAATTTATGTCATTTTTCTTGCAAAATTTTTGTGCATTATGATTATGAGTGAGTTTGGTATCGAATAGTCTGATGCATATGTAAGTGGTGTCTTTAAGTTATCGTCTTTTTTCCTCCTCTTTTTAGGTACAGCTCTAATTTGTATATTTGGTTCTAGGTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAGGTAGTGTTTGATCTTGTATGTGTGTGATTCAGATATTTACATGATATGCAAAAAACTGAGAGACATTGCTTTTAGTTATATATGAACTCTCTATCGCTTTTCCATAATGGTGCAAAGTTTGACATACATGTTTTTTGAACTGGTTTAAATGTGAAACTTATGGAGTGATGATAATTATCCAGGAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAG</genome_strand>
        <mrna_strand>ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAGCGAATTCTCTGCTTCTTCAGTTTCTAAAGACAAAGCTCCTGACTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGGAAGGTGGGCCGGCTAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAATCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG.............................................................................................................................GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG..........................................................................................................GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG......................................................................................................................................................................................GAAACAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441662" ref_strand="+" ref_description="SGN-E441662 [cSTA-31-I13]">
      <seq>cttcagcttcgtaaattctgattgttttgacagagatgggtgccaaagggaggaagaaaagcataactaagaagttgaagaagggtgctagcgaattctctgcttcttcagtttctaaagacaaagctcctgactttttgccattggaaggtgggccggctagaaaactcccggatactgaagtacgggaaagtaaatcgacaatattgtatattggaaggattccacatggattttatgagaatgaaatggaaggtttctttaagcaatttggtacaattaagaggcttagacttgcaaggaataaaaagacaggaaaatcaaagcattttggcttcatagaatttgagtcccctgaggttgctaaagtggttgcggataccatgcataactatctattatttgagcacttgttgcaagttcgtcttattcctcctgagcatgttcatcccaaattgtggaaaggtgtgaaccgctggtacaaaccgttggactgggttaaaattgaaaggaagcgtcaggacaaggaaagaacattggaagagcataataagttggttggagaaattctaaaacgtgacaaaaagaggcgaaagaggatcgaggcagctgggattgattacgagtgcccagaatgggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="7141" stop="2330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6840" g_stop="6721" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="140" r_length="120" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549">
            <donor d_prob="0.959" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5171" g_stop="5057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="255" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4931" g_stop="4876" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="311" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4014" g_stop="3967" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="359" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106">
            <donor d_prob="0.390" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3860" g_stop="3763" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="457" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2993" g_stop="2924" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="527" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2741" g_stop="2636" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="633" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E441662" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6840" e_stop="6721"/>
          <exon e_start="5171" e_stop="5057"/>
          <exon e_start="4931" e_stop="4876"/>
          <exon e_start="4014" e_stop="3967"/>
          <exon e_start="3860" e_stop="3763"/>
          <exon e_start="2993" e_stop="2924"/>
          <exon e_start="2741" e_stop="2636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTGGTATGTTTCTGGTATATTAAAGTTAGTAAAGCTCCTCAATGCTCAAGAAGTTCTTAGAATGAGAGAACCGTTTAGAACAATTTTTCCCTTCATGTTTTTAGTTTATATCTTTCCCTCTTTGAGCCAAAGGGTCTAGGAAACCGCCTCTCTACCTTCTCAAGGTAGGGGTATGGTCTGCATGCACTCTACCTTCTCACGACCTCACCTGTGGGATTATACTGGATTTGTTGTTGTTGTTTTTAGTTTCTTTCATATTACATGTTAGTTTGTCTTTTTGGTATATATGTTTGAAATGACTCAATGTGTGTTGTGATGGTTGGAAACTCTATCTATTTGGTTGTTGGGAGATCGTTAGAAGATGTTTGCTATGTAGGACTGGAAAGGGAACTTAAAGGAAAAAATGGAGTAACTGTTTTGTTGGCTAATAGTTTCCCAGACATTTGATGGAACTAGCCACCATTCTTAATTACTTATAGGTCAGTTCTAATAGAAGTAGCCTATATGCATATAATATCCTGGTAAAGCATGTAAAATCTTCATCTTACAATTGAGATAGAATTGTTGACTTTAGAACATTTGTAAAAGAAAAATAGTTTCCTGGTTCTCTAATAGTGCTTCATGATCTAAAACAAAAAGATGTAGTTGCATATAAGGCGGAGTACTTGGCACGAGCTGGCATGGACACCATTATTTTTTCAAAAAGAAGATATTATGTAGTACTTGAAATATTTTAGTTCTTTACGAGAGTGATATCATGTAAATTTTAGTTTGAAACTCTCACGAGAGATTCCTGATTAAAAAACATTTGGATATAATAATGGAAAACTAAATAGATAACTGAAACATCTTTAGAATAATGTATATCTTACTTTTGAAAAGAAATAGATAATTAAAACATTTCAGCATACATTAATTCAAAATTAGTATTCCCTCAGTTCCAAGTTATGTTGACACTATTTCTTTATTAGTTCATACAAAAAGATGACATATTCTATATATCAAAATAAATTAAATATGAACTTCCCTAATGAGAAGCTTCTATAGCCTCACAAATGTTATGCCATTTTTTTAGAAGGAAAGCAACAAATGCTACGGCATGTTTTTAAGACCACAAGTATCAAAAGACATATAGCCCCACAAATGTCATAGCATGTTTAAAAGTTAAAAACTATAAAATTAAAAAATCTTTCGTTCTTTCTTAGACTCCATTTCGAGTCAAGCTATGTCACATTAATTGGAACAAAGGGAGTAGCTGGTTTTAAGTGTCACTGAGCATGGGTCATGCTTTAATAGATGTGGCAATGTTGGTATGTGAAGTTCAGGCAATGGGTATCAAGTCATGCTCAATTGTTCTCCACATAGAAGAGTATGAGTTGTTTGGATCATATAAAAACTACATTGCGTGTGGTTCCTTTATCTTCTTTAGTAAACTATGGTATCTTTACTGTAGTCAATCAGCAGCTCTGTTGTATAAGAAAAGAAGAAAGAAGATGACTTTTTTTTCTCTGATGGCCTGCTTTTTCTGACTTGTTTTCCTTTTATGTAATAGCCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAGGTTTGCATTTCTCACATTGAGTTTTTACATCCCCTTTCTACAACTTTTTAGCTTTTGCATCACTTTGTAACACTACAAAGTTAAATAACTTTCGTTGTGCCATTTTCTGCTGATGTTGTCTTTAGGTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAGGTGAATACTCCTACTGATTCCTTATCTTTAATTAATCAGTTTACTTTGACATCTTTGTCTAGTTTTGTCTTCTTGACCTACTTTCATCATATGCTTGTTGTCGCAATCTGACCTATGTTGCTCGGACTCTTCAAATGTCAATGGGTGCGTGCCATATTCTCCAAAAGTAGTGTATTTTTGGAGAACCCGACAAGGGTGTGTCATTGAAAGTGAAGAATCCGCACAACTTATAATCTGACAACTTAAGACTTAGAAAGACCCAAGCTGGTTGGAATGGGCTCGCTCAAGTACCTAAAAGTGATGACAATTTTTTTATCATCTATGATTAGTCATAGTATTTAAAAACGGATAGCTGCAGTGACTTTAGAATTTAGAATGTGACATGTGGTGGAGCTTAACTACATTATGATTCTGCATGTGAATATTGATGTTCCCTATTTCCTGTCACATTTTCCAATAAAAAGCACGCCTTCACCAGATTTATTCTTCTTTAAAAAATAGAATAGATATATCTCTTCCATTCCTTATGGGATGTTTTAGTCTATCATTGGTGAAGTTAACAGATGCTCTGGACTTGTTAAGTTCCACGTTAAGATTGTGATATATATCTCTTCAAAGTATTTAAATTGTGGTCCAATTGTTGGAAATTACACAGAAATTCTTATAGTTTAGGCGTGACAAGAACACTATCCATAATTTTCAACAATATGGCCTCTGCAGTAAAGGGATTCGTGTTGGATATATTCTTCAATTTTCTAAGTCCATAATACACTTTTACTTTACTTAATTGTCTCTCTATGTGGTAATCTTTTGATTCTTCTCTTATTTCCTTTTTTTTCTTGTGTCTTTTCCTCATGACAGACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAGGTTGTTCCTATTCCTGAGTAATTTAGTTTACGCACCCATATTTAGAGAATCCATTTGGTCATTTTCTTCCCATTGATCTTTATCTTGGGTTTTTGGACAATTGCAGGTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATTGTAAGGGTTCCATTTTTTAAGCCAAATGATATTCATTTTAAAATTTCATATTTCTTGGGTTGCTTTTAAAAGTACTTTAAAGCTCTTTTCTTCTCGTTCCCCCCTCCCTTTTTTTTGGGGTTGGGTGGGTAGGGGGCTGATACAATAGTAAGGTACTACTAGTCTGGAATACTGTCACTTCGTATTAAATTGAATCTGCTCCCCTTCCTACTCCTTGCTTAGAGACGGTAATGCCTTGCAAAAGACTATCAGCTTGCTGAAGTGGTGGGTTGAATTGATGGAAAATAATCTTTTCTTAACGACTTAACCAAATGCTCTTGGTCTAAGATTCCAAGTGATATATAACTTTTACCAAGAGATGGATACGAGTACTACGGGGTTGAAATGCTTGAAAATTATCAATGGAAAAGACTAACCTGAGATATTCCACCTTCAGAAGCAACCTGATGACAATCAGCAATATTGTGGCTGGTTCAAGTGTAAACAGGGATGTATTTCTAAACTAGGGTCTAGAGAGTTCTCCTTTCTGAATAATCCCACTGACGTGTGGTTCCACAATGCCAGTTCTGCTCTATGGAATTTACCATTATGTTACATATAATGTTCTATACTAAATTTATGTCATTTTTCTTGCAAAATTTTTGTGCATTATGATTATGAGTGAGTTTGGTATCGAATAGTCTGATGCATATGTAAGTGGTGTCTTTAAGTTATCGTCTTTTTTCCTCCTCTTTTTAGGTACAGCTCTAATTTGTATATTTGGTTCTAGGTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAGGTAGTGTTTGATCTTGTATGTGTGTGATTCAGATATTTACATGATATGCAAAAAACTGAGAGACATTGCTTTTAGTTATATATGAACTCTCTATCGCTTTTCCATAATGGTGCAAAGTTTGACATACATGTTTTTTGAACTGGTTTAAATGTGAAACTTATGGAGTGATGATAATTATCCAGGAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAG</genome_strand>
        <mrna_strand>ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAGCGAATTCTCTGCTTCTTCAGTTTCTAAAGACAAAGCTCCTGACTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGGAAGGTGGGCCGGCTAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAATCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG.............................................................................................................................GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG..........................................................................................................GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG......................................................................................................................................................................................GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441663" ref_strand="+" ref_description="SGN-E441663 [cSTA-31-I13]">
      <seq>cttcagcttcgtaaattctgattgttttgacagagatgggtgccaaagggaggaagaaaagcataactaagaagttgaagaagggtgctagcgaattctctgcttcttcagtttctaaagacaaagctcctgactttttgccattggaaggtgggccggctagaaaactcccggatactgaagtacgggaaagtaaatcgacaatattgtatattggaaggattccacatggattttatgagaatgaaatggaaggtttctttaagcaatttggtacaattaagaggcttagacttgcaaggaataaaaagacaggaaaatcaaagcattttggcttcatagaatttgagtcccctgaggttgctaaagtggttgcggataccatgcataactatctattatttgagcacttgttgcaagttcgtcttattcctcctgagcatgttcatcccaaattgtggaaaggtgtgaaccgctggtacaaaccgttggactgggttaaaattgaaaggaagcgtcaggacaaggaaagaacattggaagagcataataagttggttggagaaattctaaaacgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="7141" stop="2388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6840" g_stop="6721" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="140" r_length="120" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549">
            <donor d_prob="0.959" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5171" g_stop="5057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="255" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4931" g_stop="4876" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="311" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4014" g_stop="3967" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="359" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106">
            <donor d_prob="0.390" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3860" g_stop="3763" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="457" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2993" g_stop="2924" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="527" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2741" g_stop="2688" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="581" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E441663" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6840" e_stop="6721"/>
          <exon e_start="5171" e_stop="5057"/>
          <exon e_start="4931" e_stop="4876"/>
          <exon e_start="4014" e_stop="3967"/>
          <exon e_start="3860" e_stop="3763"/>
          <exon e_start="2993" e_stop="2924"/>
          <exon e_start="2741" e_stop="2688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTGGTATGTTTCTGGTATATTAAAGTTAGTAAAGCTCCTCAATGCTCAAGAAGTTCTTAGAATGAGAGAACCGTTTAGAACAATTTTTCCCTTCATGTTTTTAGTTTATATCTTTCCCTCTTTGAGCCAAAGGGTCTAGGAAACCGCCTCTCTACCTTCTCAAGGTAGGGGTATGGTCTGCATGCACTCTACCTTCTCACGACCTCACCTGTGGGATTATACTGGATTTGTTGTTGTTGTTTTTAGTTTCTTTCATATTACATGTTAGTTTGTCTTTTTGGTATATATGTTTGAAATGACTCAATGTGTGTTGTGATGGTTGGAAACTCTATCTATTTGGTTGTTGGGAGATCGTTAGAAGATGTTTGCTATGTAGGACTGGAAAGGGAACTTAAAGGAAAAAATGGAGTAACTGTTTTGTTGGCTAATAGTTTCCCAGACATTTGATGGAACTAGCCACCATTCTTAATTACTTATAGGTCAGTTCTAATAGAAGTAGCCTATATGCATATAATATCCTGGTAAAGCATGTAAAATCTTCATCTTACAATTGAGATAGAATTGTTGACTTTAGAACATTTGTAAAAGAAAAATAGTTTCCTGGTTCTCTAATAGTGCTTCATGATCTAAAACAAAAAGATGTAGTTGCATATAAGGCGGAGTACTTGGCACGAGCTGGCATGGACACCATTATTTTTTCAAAAAGAAGATATTATGTAGTACTTGAAATATTTTAGTTCTTTACGAGAGTGATATCATGTAAATTTTAGTTTGAAACTCTCACGAGAGATTCCTGATTAAAAAACATTTGGATATAATAATGGAAAACTAAATAGATAACTGAAACATCTTTAGAATAATGTATATCTTACTTTTGAAAAGAAATAGATAATTAAAACATTTCAGCATACATTAATTCAAAATTAGTATTCCCTCAGTTCCAAGTTATGTTGACACTATTTCTTTATTAGTTCATACAAAAAGATGACATATTCTATATATCAAAATAAATTAAATATGAACTTCCCTAATGAGAAGCTTCTATAGCCTCACAAATGTTATGCCATTTTTTTAGAAGGAAAGCAACAAATGCTACGGCATGTTTTTAAGACCACAAGTATCAAAAGACATATAGCCCCACAAATGTCATAGCATGTTTAAAAGTTAAAAACTATAAAATTAAAAAATCTTTCGTTCTTTCTTAGACTCCATTTCGAGTCAAGCTATGTCACATTAATTGGAACAAAGGGAGTAGCTGGTTTTAAGTGTCACTGAGCATGGGTCATGCTTTAATAGATGTGGCAATGTTGGTATGTGAAGTTCAGGCAATGGGTATCAAGTCATGCTCAATTGTTCTCCACATAGAAGAGTATGAGTTGTTTGGATCATATAAAAACTACATTGCGTGTGGTTCCTTTATCTTCTTTAGTAAACTATGGTATCTTTACTGTAGTCAATCAGCAGCTCTGTTGTATAAGAAAAGAAGAAAGAAGATGACTTTTTTTTCTCTGATGGCCTGCTTTTTCTGACTTGTTTTCCTTTTATGTAATAGCCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAGGTTTGCATTTCTCACATTGAGTTTTTACATCCCCTTTCTACAACTTTTTAGCTTTTGCATCACTTTGTAACACTACAAAGTTAAATAACTTTCGTTGTGCCATTTTCTGCTGATGTTGTCTTTAGGTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAGGTGAATACTCCTACTGATTCCTTATCTTTAATTAATCAGTTTACTTTGACATCTTTGTCTAGTTTTGTCTTCTTGACCTACTTTCATCATATGCTTGTTGTCGCAATCTGACCTATGTTGCTCGGACTCTTCAAATGTCAATGGGTGCGTGCCATATTCTCCAAAAGTAGTGTATTTTTGGAGAACCCGACAAGGGTGTGTCATTGAAAGTGAAGAATCCGCACAACTTATAATCTGACAACTTAAGACTTAGAAAGACCCAAGCTGGTTGGAATGGGCTCGCTCAAGTACCTAAAAGTGATGACAATTTTTTTATCATCTATGATTAGTCATAGTATTTAAAAACGGATAGCTGCAGTGACTTTAGAATTTAGAATGTGACATGTGGTGGAGCTTAACTACATTATGATTCTGCATGTGAATATTGATGTTCCCTATTTCCTGTCACATTTTCCAATAAAAAGCACGCCTTCACCAGATTTATTCTTCTTTAAAAAATAGAATAGATATATCTCTTCCATTCCTTATGGGATGTTTTAGTCTATCATTGGTGAAGTTAACAGATGCTCTGGACTTGTTAAGTTCCACGTTAAGATTGTGATATATATCTCTTCAAAGTATTTAAATTGTGGTCCAATTGTTGGAAATTACACAGAAATTCTTATAGTTTAGGCGTGACAAGAACACTATCCATAATTTTCAACAATATGGCCTCTGCAGTAAAGGGATTCGTGTTGGATATATTCTTCAATTTTCTAAGTCCATAATACACTTTTACTTTACTTAATTGTCTCTCTATGTGGTAATCTTTTGATTCTTCTCTTATTTCCTTTTTTTTCTTGTGTCTTTTCCTCATGACAGACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAGGTTGTTCCTATTCCTGAGTAATTTAGTTTACGCACCCATATTTAGAGAATCCATTTGGTCATTTTCTTCCCATTGATCTTTATCTTGGGTTTTTGGACAATTGCAGGTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATTGTAAGGGTTCCATTTTTTAAGCCAAATGATATTCATTTTAAAATTTCATATTTCTTGGGTTGCTTTTAAAAGTACTTTAAAGCTCTTTTCTTCTCGTTCCCCCCTCCCTTTTTTTTGGGGTTGGGTGGGTAGGGGGCTGATACAATAGTAAGGTACTACTAGTCTGGAATACTGTCACTTCGTATTAAATTGAATCTGCTCCCCTTCCTACTCCTTGCTTAGAGACGGTAATGCCTTGCAAAAGACTATCAGCTTGCTGAAGTGGTGGGTTGAATTGATGGAAAATAATCTTTTCTTAACGACTTAACCAAATGCTCTTGGTCTAAGATTCCAAGTGATATATAACTTTTACCAAGAGATGGATACGAGTACTACGGGGTTGAAATGCTTGAAAATTATCAATGGAAAAGACTAACCTGAGATATTCCACCTTCAGAAGCAACCTGATGACAATCAGCAATATTGTGGCTGGTTCAAGTGTAAACAGGGATGTATTTCTAAACTAGGGTCTAGAGAGTTCTCCTTTCTGAATAATCCCACTGACGTGTGGTTCCACAATGCCAGTTCTGCTCTATGGAATTTACCATTATGTTACATATAATGTTCTATACTAAATTTATGTCATTTTTCTTGCAAAATTTTTGTGCATTATGATTATGAGTGAGTTTGGTATCGAATAGTCTGATGCATATGTAAGTGGTGTCTTTAAGTTATCGTCTTTTTTCCTCCTCTTTTTAGGTACAGCTCTAATTTGTATATTTGGTTCTAGGTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAGGTAGTGTTTGATCTTGTATGTGTGTGATTCAGATATTTACATGATATGCAAAAAACTGAGAGACATTGCTTTTAGTTATATATGAACTCTCTATCGCTTTTCCATAATGGTGCAAAGTTTGACATACATGTTTTTTGAACTGGTTTAAATGTGAAACTTATGGAGTGATGATAATTATCCAGGAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGAC</genome_strand>
        <mrna_strand>ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAGCGAATTCTCTGCTTCTTCAGTTTCTAAAGACAAAGCTCCTGACTTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGGAAGGTGGGCCGGCTAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAATCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG.............................................................................................................................GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG..........................................................................................................GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG......................................................................................................................................................................................GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724666" ref_strand="+" ref_description="SGN-E724666 [FC24DC05]">
      <seq>gccggcagctccttcttcagcttcgtgaattctgattgttttgacagagatgggtgccaaagggaggaagaaaagcataactaagaagttgaagaagggtgctaacgaattctcagcttcttcggtttctaaagataaagctgctgactttctgccattggaaggtgggccggcaagaaaactcccggatactgaagtacgggaaagtaaagcgacaatattgtatattggaaggattccacatggattttatgagaatgaaatggaaggtttctttaagcaatttggtacaattaaaaggcttagacttgcaaggaataaaaagacgggaaaatcaaagcattttggcttcatagaatttgagtcccctgaggttgctaaagtggttgcggataccatgcataactatctattatttgagcacttgttgcaagttcgtcttattcctcctgagcatgttcatcccaaattgtggaaaggtgtgaaccgctggtacaaaccgttggactgggttaaaattgaaaggaagcgtcaggacaaggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="8158" stop="2621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7858" g_stop="7825" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7824" i_stop="6841" i_length="984">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6840" g_stop="6721" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="154" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="5057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="269" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4931" g_stop="4876" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="325" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4014" g_stop="3967" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="373" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106">
            <donor d_prob="0.390" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3860" g_stop="3763" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="471" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2993" g_stop="2924" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="541" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2741" g_stop="2737" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="546" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E724666" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7858" e_stop="7825"/>
          <exon e_start="6840" e_stop="6721"/>
          <exon e_start="5171" e_stop="5057"/>
          <exon e_start="4931" e_stop="4876"/>
          <exon e_start="4014" e_stop="3967"/>
          <exon e_start="3860" e_stop="3763"/>
          <exon e_start="2993" e_stop="2924"/>
          <exon e_start="2741" e_stop="2737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTGGTAATTAGTTTCATCTATACTTATCTATAATTGCAATGAACAGAGCAAATTTAGCTGTGTTTTTAAAATTAGTTAAATTGATGCTATTCTTTTCGTTACCAATGTGAATAATTTTGGCTGTTTTTCATGGTTGTTTATGATTTTTACATGTTTATTTGAAGTCAGAATACATAAAAAGACACTCAAAGTCGGTTTCAATTGTCATGCAAACACTACATCTTTAGTATGCACGTCTATACATCTCAATCTGACTTTACTGTGGCAGTTGAACACTGTAGTTTTGTTACAAAATGATCATCTTGATACTTCCAAAATTTAGTGTAACGTCAGTGTGGGGTGTCCAGGAGACAGAGTGGGGAAGAGTTTGAGTGGTGTCCAGACTTTGTTATATCGAAGTTAAAGTTTGAGAGTTCTACATATTAATTTGAAGTTGTACTGGCTGTCCATTTGATCAATAGTTCTAAATTTGTGATCGTAGGATTTCTAATTTAACTCATGAATCTCTTTAGGTTGATCAAGGATTTTTATCTAGGTATGATTTGCAATTTTCTGGCTACCTAATAGTGGCTCTTTTTTCAACCAACAAAAGTTGGGGTTAGGCAGGTAGAGACGTACACAAACCTTACCCATACCTTGGGAGATATAGAGTTGGTTTCTGATACACCCTCGACTCCAGGAAATAGTGGCTCTTTTTTCTAAGTTTAAGATTTTACATGTGAATTCACATTTCTAATCGCTATCCATTCGATAAATAGGTCCATATTTGTGATTGGTTGTATTTCTAATGAAAATTTTAGGCAGACTAGGATTTTTCTATATAGGCAGAATTTGCATTTTCCTGGCTACCTATCCAAATAATAGTGGCTCTTTTGTCATTCTGTGATTTGCATTTTTACTTGCTACCCATGTGATAAAATGAGTCTAAAATGGTCAACATGTCATACTTCCTGTGTAAGTAATGAGTTTTCTTTTGTGTCTACCAAGATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTGGTATGTTTCTGGTATATTAAAGTTAGTAAAGCTCCTCAATGCTCAAGAAGTTCTTAGAATGAGAGAACCGTTTAGAACAATTTTTCCCTTCATGTTTTTAGTTTATATCTTTCCCTCTTTGAGCCAAAGGGTCTAGGAAACCGCCTCTCTACCTTCTCAAGGTAGGGGTATGGTCTGCATGCACTCTACCTTCTCACGACCTCACCTGTGGGATTATACTGGATTTGTTGTTGTTGTTTTTAGTTTCTTTCATATTACATGTTAGTTTGTCTTTTTGGTATATATGTTTGAAATGACTCAATGTGTGTTGTGATGGTTGGAAACTCTATCTATTTGGTTGTTGGGAGATCGTTAGAAGATGTTTGCTATGTAGGACTGGAAAGGGAACTTAAAGGAAAAAATGGAGTAACTGTTTTGTTGGCTAATAGTTTCCCAGACATTTGATGGAACTAGCCACCATTCTTAATTACTTATAGGTCAGTTCTAATAGAAGTAGCCTATATGCATATAATATCCTGGTAAAGCATGTAAAATCTTCATCTTACAATTGAGATAGAATTGTTGACTTTAGAACATTTGTAAAAGAAAAATAGTTTCCTGGTTCTCTAATAGTGCTTCATGATCTAAAACAAAAAGATGTAGTTGCATATAAGGCGGAGTACTTGGCACGAGCTGGCATGGACACCATTATTTTTTCAAAAAGAAGATATTATGTAGTACTTGAAATATTTTAGTTCTTTACGAGAGTGATATCATGTAAATTTTAGTTTGAAACTCTCACGAGAGATTCCTGATTAAAAAACATTTGGATATAATAATGGAAAACTAAATAGATAACTGAAACATCTTTAGAATAATGTATATCTTACTTTTGAAAAGAAATAGATAATTAAAACATTTCAGCATACATTAATTCAAAATTAGTATTCCCTCAGTTCCAAGTTATGTTGACACTATTTCTTTATTAGTTCATACAAAAAGATGACATATTCTATATATCAAAATAAATTAAATATGAACTTCCCTAATGAGAAGCTTCTATAGCCTCACAAATGTTATGCCATTTTTTTAGAAGGAAAGCAACAAATGCTACGGCATGTTTTTAAGACCACAAGTATCAAAAGACATATAGCCCCACAAATGTCATAGCATGTTTAAAAGTTAAAAACTATAAAATTAAAAAATCTTTCGTTCTTTCTTAGACTCCATTTCGAGTCAAGCTATGTCACATTAATTGGAACAAAGGGAGTAGCTGGTTTTAAGTGTCACTGAGCATGGGTCATGCTTTAATAGATGTGGCAATGTTGGTATGTGAAGTTCAGGCAATGGGTATCAAGTCATGCTCAATTGTTCTCCACATAGAAGAGTATGAGTTGTTTGGATCATATAAAAACTACATTGCGTGTGGTTCCTTTATCTTCTTTAGTAAACTATGGTATCTTTACTGTAGTCAATCAGCAGCTCTGTTGTATAAGAAAAGAAGAAAGAAGATGACTTTTTTTTCTCTGATGGCCTGCTTTTTCTGACTTGTTTTCCTTTTATGTAATAGCCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAGGTTTGCATTTCTCACATTGAGTTTTTACATCCCCTTTCTACAACTTTTTAGCTTTTGCATCACTTTGTAACACTACAAAGTTAAATAACTTTCGTTGTGCCATTTTCTGCTGATGTTGTCTTTAGGTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAGGTGAATACTCCTACTGATTCCTTATCTTTAATTAATCAGTTTACTTTGACATCTTTGTCTAGTTTTGTCTTCTTGACCTACTTTCATCATATGCTTGTTGTCGCAATCTGACCTATGTTGCTCGGACTCTTCAAATGTCAATGGGTGCGTGCCATATTCTCCAAAAGTAGTGTATTTTTGGAGAACCCGACAAGGGTGTGTCATTGAAAGTGAAGAATCCGCACAACTTATAATCTGACAACTTAAGACTTAGAAAGACCCAAGCTGGTTGGAATGGGCTCGCTCAAGTACCTAAAAGTGATGACAATTTTTTTATCATCTATGATTAGTCATAGTATTTAAAAACGGATAGCTGCAGTGACTTTAGAATTTAGAATGTGACATGTGGTGGAGCTTAACTACATTATGATTCTGCATGTGAATATTGATGTTCCCTATTTCCTGTCACATTTTCCAATAAAAAGCACGCCTTCACCAGATTTATTCTTCTTTAAAAAATAGAATAGATATATCTCTTCCATTCCTTATGGGATGTTTTAGTCTATCATTGGTGAAGTTAACAGATGCTCTGGACTTGTTAAGTTCCACGTTAAGATTGTGATATATATCTCTTCAAAGTATTTAAATTGTGGTCCAATTGTTGGAAATTACACAGAAATTCTTATAGTTTAGGCGTGACAAGAACACTATCCATAATTTTCAACAATATGGCCTCTGCAGTAAAGGGATTCGTGTTGGATATATTCTTCAATTTTCTAAGTCCATAATACACTTTTACTTTACTTAATTGTCTCTCTATGTGGTAATCTTTTGATTCTTCTCTTATTTCCTTTTTTTTCTTGTGTCTTTTCCTCATGACAGACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAGGTTGTTCCTATTCCTGAGTAATTTAGTTTACGCACCCATATTTAGAGAATCCATTTGGTCATTTTCTTCCCATTGATCTTTATCTTGGGTTTTTGGACAATTGCAGGTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATTGTAAGGGTTCCATTTTTTAAGCCAAATGATATTCATTTTAAAATTTCATATTTCTTGGGTTGCTTTTAAAAGTACTTTAAAGCTCTTTTCTTCTCGTTCCCCCCTCCCTTTTTTTTGGGGTTGGGTGGGTAGGGGGCTGATACAATAGTAAGGTACTACTAGTCTGGAATACTGTCACTTCGTATTAAATTGAATCTGCTCCCCTTCCTACTCCTTGCTTAGAGACGGTAATGCCTTGCAAAAGACTATCAGCTTGCTGAAGTGGTGGGTTGAATTGATGGAAAATAATCTTTTCTTAACGACTTAACCAAATGCTCTTGGTCTAAGATTCCAAGTGATATATAACTTTTACCAAGAGATGGATACGAGTACTACGGGGTTGAAATGCTTGAAAATTATCAATGGAAAAGACTAACCTGAGATATTCCACCTTCAGAAGCAACCTGATGACAATCAGCAATATTGTGGCTGGTTCAAGTGTAAACAGGGATGTATTTCTAAACTAGGGTCTAGAGAGTTCTCCTTTCTGAATAATCCCACTGACGTGTGGTTCCACAATGCCAGTTCTGCTCTATGGAATTTACCATTATGTTACATATAATGTTCTATACTAAATTTATGTCATTTTTCTTGCAAAATTTTTGTGCATTATGATTATGAGTGAGTTTGGTATCGAATAGTCTGATGCATATGTAAGTGGTGTCTTTAAGTTATCGTCTTTTTTCCTCCTCTTTTTAGGTACAGCTCTAATTTGTATATTTGGTTCTAGGTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAGGTAGTGTTTGATCTTGTATGTGTGTGATTCAGATATTTACATGATATGCAAAAAACTGAGAGACATTGCTTTTAGTTATATATGAACTCTCTATCGCTTTTCCATAATGGTGCAAAGTTTGACATACATGTTTTTTGAACTGGTTTAAATGTGAAACTTATGGAGTGATGATAATTATCCAGGAAAG</genome_strand>
        <mrna_strand>GCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG.............................................................................................................................GTTTCTTTAAGCAATTTGGTACAATTAAAAGGCTTAGACTTGCAAGGAATAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG..........................................................................................................GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG......................................................................................................................................................................................GAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321566" ref_strand="+" ref_description="SGN-E321566 [cTOB-25-K3]">
      <seq>ccactctccgctttactcctcctctatatctttttccggcggccggcagctccttcttcagcttcgtgaattctgattgttttgacagagatgggtgccaaagggaggaagaaaagcataactaagaagttgaagaagggtgctaacgaattctcagcttcttcggtttctaaagataaagctgctgactttctgccattggaaggtgggccggcaagaaaactcccggatactgaagtacgggaaagtaaagcgacaatattgtatattggaaggattccacatggattttatgagaatgaaatggaaggtttctttaagcaatttggtacaattaagaggcttagacttgcaaggaataaaaagacgggaaaatcaaagcattttggcttcatagaatttgagtcccctgaggttgctaaagtggttgcggataccatgcataactatctattatttgagcacttgttgcaagttcgtcttattcctcctgagcatgttcatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="8199" stop="3468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7899" g_stop="7825" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7824" i_stop="6841" i_length="984">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6840" g_stop="6721" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="195" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="5057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="310" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4931" g_stop="4876" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="366" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4014" g_stop="3967" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="414" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106">
            <donor d_prob="0.390" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3860" g_stop="3768" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="507" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E321566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7899" e_stop="7825"/>
          <exon e_start="6840" e_stop="6721"/>
          <exon e_start="5171" e_stop="5057"/>
          <exon e_start="4931" e_stop="4876"/>
          <exon e_start="4014" e_stop="3967"/>
          <exon e_start="3860" e_stop="3768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTGGTAATTAGTTTCATCTATACTTATCTATAATTGCAATGAACAGAGCAAATTTAGCTGTGTTTTTAAAATTAGTTAAATTGATGCTATTCTTTTCGTTACCAATGTGAATAATTTTGGCTGTTTTTCATGGTTGTTTATGATTTTTACATGTTTATTTGAAGTCAGAATACATAAAAAGACACTCAAAGTCGGTTTCAATTGTCATGCAAACACTACATCTTTAGTATGCACGTCTATACATCTCAATCTGACTTTACTGTGGCAGTTGAACACTGTAGTTTTGTTACAAAATGATCATCTTGATACTTCCAAAATTTAGTGTAACGTCAGTGTGGGGTGTCCAGGAGACAGAGTGGGGAAGAGTTTGAGTGGTGTCCAGACTTTGTTATATCGAAGTTAAAGTTTGAGAGTTCTACATATTAATTTGAAGTTGTACTGGCTGTCCATTTGATCAATAGTTCTAAATTTGTGATCGTAGGATTTCTAATTTAACTCATGAATCTCTTTAGGTTGATCAAGGATTTTTATCTAGGTATGATTTGCAATTTTCTGGCTACCTAATAGTGGCTCTTTTTTCAACCAACAAAAGTTGGGGTTAGGCAGGTAGAGACGTACACAAACCTTACCCATACCTTGGGAGATATAGAGTTGGTTTCTGATACACCCTCGACTCCAGGAAATAGTGGCTCTTTTTTCTAAGTTTAAGATTTTACATGTGAATTCACATTTCTAATCGCTATCCATTCGATAAATAGGTCCATATTTGTGATTGGTTGTATTTCTAATGAAAATTTTAGGCAGACTAGGATTTTTCTATATAGGCAGAATTTGCATTTTCCTGGCTACCTATCCAAATAATAGTGGCTCTTTTGTCATTCTGTGATTTGCATTTTTACTTGCTACCCATGTGATAAAATGAGTCTAAAATGGTCAACATGTCATACTTCCTGTGTAAGTAATGAGTTTTCTTTTGTGTCTACCAAGATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTGGTATGTTTCTGGTATATTAAAGTTAGTAAAGCTCCTCAATGCTCAAGAAGTTCTTAGAATGAGAGAACCGTTTAGAACAATTTTTCCCTTCATGTTTTTAGTTTATATCTTTCCCTCTTTGAGCCAAAGGGTCTAGGAAACCGCCTCTCTACCTTCTCAAGGTAGGGGTATGGTCTGCATGCACTCTACCTTCTCACGACCTCACCTGTGGGATTATACTGGATTTGTTGTTGTTGTTTTTAGTTTCTTTCATATTACATGTTAGTTTGTCTTTTTGGTATATATGTTTGAAATGACTCAATGTGTGTTGTGATGGTTGGAAACTCTATCTATTTGGTTGTTGGGAGATCGTTAGAAGATGTTTGCTATGTAGGACTGGAAAGGGAACTTAAAGGAAAAAATGGAGTAACTGTTTTGTTGGCTAATAGTTTCCCAGACATTTGATGGAACTAGCCACCATTCTTAATTACTTATAGGTCAGTTCTAATAGAAGTAGCCTATATGCATATAATATCCTGGTAAAGCATGTAAAATCTTCATCTTACAATTGAGATAGAATTGTTGACTTTAGAACATTTGTAAAAGAAAAATAGTTTCCTGGTTCTCTAATAGTGCTTCATGATCTAAAACAAAAAGATGTAGTTGCATATAAGGCGGAGTACTTGGCACGAGCTGGCATGGACACCATTATTTTTTCAAAAAGAAGATATTATGTAGTACTTGAAATATTTTAGTTCTTTACGAGAGTGATATCATGTAAATTTTAGTTTGAAACTCTCACGAGAGATTCCTGATTAAAAAACATTTGGATATAATAATGGAAAACTAAATAGATAACTGAAACATCTTTAGAATAATGTATATCTTACTTTTGAAAAGAAATAGATAATTAAAACATTTCAGCATACATTAATTCAAAATTAGTATTCCCTCAGTTCCAAGTTATGTTGACACTATTTCTTTATTAGTTCATACAAAAAGATGACATATTCTATATATCAAAATAAATTAAATATGAACTTCCCTAATGAGAAGCTTCTATAGCCTCACAAATGTTATGCCATTTTTTTAGAAGGAAAGCAACAAATGCTACGGCATGTTTTTAAGACCACAAGTATCAAAAGACATATAGCCCCACAAATGTCATAGCATGTTTAAAAGTTAAAAACTATAAAATTAAAAAATCTTTCGTTCTTTCTTAGACTCCATTTCGAGTCAAGCTATGTCACATTAATTGGAACAAAGGGAGTAGCTGGTTTTAAGTGTCACTGAGCATGGGTCATGCTTTAATAGATGTGGCAATGTTGGTATGTGAAGTTCAGGCAATGGGTATCAAGTCATGCTCAATTGTTCTCCACATAGAAGAGTATGAGTTGTTTGGATCATATAAAAACTACATTGCGTGTGGTTCCTTTATCTTCTTTAGTAAACTATGGTATCTTTACTGTAGTCAATCAGCAGCTCTGTTGTATAAGAAAAGAAGAAAGAAGATGACTTTTTTTTCTCTGATGGCCTGCTTTTTCTGACTTGTTTTCCTTTTATGTAATAGCCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAGGTTTGCATTTCTCACATTGAGTTTTTACATCCCCTTTCTACAACTTTTTAGCTTTTGCATCACTTTGTAACACTACAAAGTTAAATAACTTTCGTTGTGCCATTTTCTGCTGATGTTGTCTTTAGGTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAGGTGAATACTCCTACTGATTCCTTATCTTTAATTAATCAGTTTACTTTGACATCTTTGTCTAGTTTTGTCTTCTTGACCTACTTTCATCATATGCTTGTTGTCGCAATCTGACCTATGTTGCTCGGACTCTTCAAATGTCAATGGGTGCGTGCCATATTCTCCAAAAGTAGTGTATTTTTGGAGAACCCGACAAGGGTGTGTCATTGAAAGTGAAGAATCCGCACAACTTATAATCTGACAACTTAAGACTTAGAAAGACCCAAGCTGGTTGGAATGGGCTCGCTCAAGTACCTAAAAGTGATGACAATTTTTTTATCATCTATGATTAGTCATAGTATTTAAAAACGGATAGCTGCAGTGACTTTAGAATTTAGAATGTGACATGTGGTGGAGCTTAACTACATTATGATTCTGCATGTGAATATTGATGTTCCCTATTTCCTGTCACATTTTCCAATAAAAAGCACGCCTTCACCAGATTTATTCTTCTTTAAAAAATAGAATAGATATATCTCTTCCATTCCTTATGGGATGTTTTAGTCTATCATTGGTGAAGTTAACAGATGCTCTGGACTTGTTAAGTTCCACGTTAAGATTGTGATATATATCTCTTCAAAGTATTTAAATTGTGGTCCAATTGTTGGAAATTACACAGAAATTCTTATAGTTTAGGCGTGACAAGAACACTATCCATAATTTTCAACAATATGGCCTCTGCAGTAAAGGGATTCGTGTTGGATATATTCTTCAATTTTCTAAGTCCATAATACACTTTTACTTTACTTAATTGTCTCTCTATGTGGTAATCTTTTGATTCTTCTCTTATTTCCTTTTTTTTCTTGTGTCTTTTCCTCATGACAGACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAGGTTGTTCCTATTCCTGAGTAATTTAGTTTACGCACCCATATTTAGAGAATCCATTTGGTCATTTTCTTCCCATTGATCTTTATCTTGGGTTTTTGGACAATTGCAGGTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCC</genome_strand>
        <mrna_strand>CCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG.............................................................................................................................GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG..........................................................................................................GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321820" ref_strand="+" ref_description="SGN-E321820 [cTOB-25-D12]">
      <seq>ccactctccgctttactcctcctctatatctttttccggcggccggcagctccttcttcagcttcgtgaattctgattgttttgacagagatgggtgccaaagggaggaagaaaagcataactaacaagttgaagaagggtgctaacgaattctcatcttcttcggtttctaaagataaagctgctgactttctgccattggaaggtgggccggcaagaaaactcccggatactgaagtacgggaaagtaaagcgacaatattgtatattggaaggattccacatggattttatgagaatgaaatggaaggtttctttaagcaatttggtacaattaagaggcttatacttgcaaggaataaaaagacgggaaaatcaaagcattttggcttcataaaatttgagtcccctgaggttgctaaagtggttgcggataccatgcataactatctattatttgagcacttgttgccagtccgtcttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="8199" stop="3488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7899" g_stop="7825" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7824" i_stop="6841" i_length="984">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6840" g_stop="6721" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="195" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="5057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="310" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4931" g_stop="4876" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="366" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4014" g_stop="3967" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="414" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106">
            <donor d_prob="0.390" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3860" g_stop="3788" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="487" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E321820" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7899" e_stop="7825"/>
          <exon e_start="6840" e_stop="6721"/>
          <exon e_start="5171" e_stop="5057"/>
          <exon e_start="4931" e_stop="4876"/>
          <exon e_start="4014" e_stop="3967"/>
          <exon e_start="3860" e_stop="3788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTGGTAATTAGTTTCATCTATACTTATCTATAATTGCAATGAACAGAGCAAATTTAGCTGTGTTTTTAAAATTAGTTAAATTGATGCTATTCTTTTCGTTACCAATGTGAATAATTTTGGCTGTTTTTCATGGTTGTTTATGATTTTTACATGTTTATTTGAAGTCAGAATACATAAAAAGACACTCAAAGTCGGTTTCAATTGTCATGCAAACACTACATCTTTAGTATGCACGTCTATACATCTCAATCTGACTTTACTGTGGCAGTTGAACACTGTAGTTTTGTTACAAAATGATCATCTTGATACTTCCAAAATTTAGTGTAACGTCAGTGTGGGGTGTCCAGGAGACAGAGTGGGGAAGAGTTTGAGTGGTGTCCAGACTTTGTTATATCGAAGTTAAAGTTTGAGAGTTCTACATATTAATTTGAAGTTGTACTGGCTGTCCATTTGATCAATAGTTCTAAATTTGTGATCGTAGGATTTCTAATTTAACTCATGAATCTCTTTAGGTTGATCAAGGATTTTTATCTAGGTATGATTTGCAATTTTCTGGCTACCTAATAGTGGCTCTTTTTTCAACCAACAAAAGTTGGGGTTAGGCAGGTAGAGACGTACACAAACCTTACCCATACCTTGGGAGATATAGAGTTGGTTTCTGATACACCCTCGACTCCAGGAAATAGTGGCTCTTTTTTCTAAGTTTAAGATTTTACATGTGAATTCACATTTCTAATCGCTATCCATTCGATAAATAGGTCCATATTTGTGATTGGTTGTATTTCTAATGAAAATTTTAGGCAGACTAGGATTTTTCTATATAGGCAGAATTTGCATTTTCCTGGCTACCTATCCAAATAATAGTGGCTCTTTTGTCATTCTGTGATTTGCATTTTTACTTGCTACCCATGTGATAAAATGAGTCTAAAATGGTCAACATGTCATACTTCCTGTGTAAGTAATGAGTTTTCTTTTGTGTCTACCAAGATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTGGTATGTTTCTGGTATATTAAAGTTAGTAAAGCTCCTCAATGCTCAAGAAGTTCTTAGAATGAGAGAACCGTTTAGAACAATTTTTCCCTTCATGTTTTTAGTTTATATCTTTCCCTCTTTGAGCCAAAGGGTCTAGGAAACCGCCTCTCTACCTTCTCAAGGTAGGGGTATGGTCTGCATGCACTCTACCTTCTCACGACCTCACCTGTGGGATTATACTGGATTTGTTGTTGTTGTTTTTAGTTTCTTTCATATTACATGTTAGTTTGTCTTTTTGGTATATATGTTTGAAATGACTCAATGTGTGTTGTGATGGTTGGAAACTCTATCTATTTGGTTGTTGGGAGATCGTTAGAAGATGTTTGCTATGTAGGACTGGAAAGGGAACTTAAAGGAAAAAATGGAGTAACTGTTTTGTTGGCTAATAGTTTCCCAGACATTTGATGGAACTAGCCACCATTCTTAATTACTTATAGGTCAGTTCTAATAGAAGTAGCCTATATGCATATAATATCCTGGTAAAGCATGTAAAATCTTCATCTTACAATTGAGATAGAATTGTTGACTTTAGAACATTTGTAAAAGAAAAATAGTTTCCTGGTTCTCTAATAGTGCTTCATGATCTAAAACAAAAAGATGTAGTTGCATATAAGGCGGAGTACTTGGCACGAGCTGGCATGGACACCATTATTTTTTCAAAAAGAAGATATTATGTAGTACTTGAAATATTTTAGTTCTTTACGAGAGTGATATCATGTAAATTTTAGTTTGAAACTCTCACGAGAGATTCCTGATTAAAAAACATTTGGATATAATAATGGAAAACTAAATAGATAACTGAAACATCTTTAGAATAATGTATATCTTACTTTTGAAAAGAAATAGATAATTAAAACATTTCAGCATACATTAATTCAAAATTAGTATTCCCTCAGTTCCAAGTTATGTTGACACTATTTCTTTATTAGTTCATACAAAAAGATGACATATTCTATATATCAAAATAAATTAAATATGAACTTCCCTAATGAGAAGCTTCTATAGCCTCACAAATGTTATGCCATTTTTTTAGAAGGAAAGCAACAAATGCTACGGCATGTTTTTAAGACCACAAGTATCAAAAGACATATAGCCCCACAAATGTCATAGCATGTTTAAAAGTTAAAAACTATAAAATTAAAAAATCTTTCGTTCTTTCTTAGACTCCATTTCGAGTCAAGCTATGTCACATTAATTGGAACAAAGGGAGTAGCTGGTTTTAAGTGTCACTGAGCATGGGTCATGCTTTAATAGATGTGGCAATGTTGGTATGTGAAGTTCAGGCAATGGGTATCAAGTCATGCTCAATTGTTCTCCACATAGAAGAGTATGAGTTGTTTGGATCATATAAAAACTACATTGCGTGTGGTTCCTTTATCTTCTTTAGTAAACTATGGTATCTTTACTGTAGTCAATCAGCAGCTCTGTTGTATAAGAAAAGAAGAAAGAAGATGACTTTTTTTTCTCTGATGGCCTGCTTTTTCTGACTTGTTTTCCTTTTATGTAATAGCCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAGGTTTGCATTTCTCACATTGAGTTTTTACATCCCCTTTCTACAACTTTTTAGCTTTTGCATCACTTTGTAACACTACAAAGTTAAATAACTTTCGTTGTGCCATTTTCTGCTGATGTTGTCTTTAGGTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAGGTGAATACTCCTACTGATTCCTTATCTTTAATTAATCAGTTTACTTTGACATCTTTGTCTAGTTTTGTCTTCTTGACCTACTTTCATCATATGCTTGTTGTCGCAATCTGACCTATGTTGCTCGGACTCTTCAAATGTCAATGGGTGCGTGCCATATTCTCCAAAAGTAGTGTATTTTTGGAGAACCCGACAAGGGTGTGTCATTGAAAGTGAAGAATCCGCACAACTTATAATCTGACAACTTAAGACTTAGAAAGACCCAAGCTGGTTGGAATGGGCTCGCTCAAGTACCTAAAAGTGATGACAATTTTTTTATCATCTATGATTAGTCATAGTATTTAAAAACGGATAGCTGCAGTGACTTTAGAATTTAGAATGTGACATGTGGTGGAGCTTAACTACATTATGATTCTGCATGTGAATATTGATGTTCCCTATTTCCTGTCACATTTTCCAATAAAAAGCACGCCTTCACCAGATTTATTCTTCTTTAAAAAATAGAATAGATATATCTCTTCCATTCCTTATGGGATGTTTTAGTCTATCATTGGTGAAGTTAACAGATGCTCTGGACTTGTTAAGTTCCACGTTAAGATTGTGATATATATCTCTTCAAAGTATTTAAATTGTGGTCCAATTGTTGGAAATTACACAGAAATTCTTATAGTTTAGGCGTGACAAGAACACTATCCATAATTTTCAACAATATGGCCTCTGCAGTAAAGGGATTCGTGTTGGATATATTCTTCAATTTTCTAAGTCCATAATACACTTTTACTTTACTTAATTGTCTCTCTATGTGGTAATCTTTTGATTCTTCTCTTATTTCCTTTTTTTTCTTGTGTCTTTTCCTCATGACAGACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAGGTTGTTCCTATTCCTGAGTAATTTAGTTTACGCACCCATATTTAGAGAATCCATTTGGTCATTTTCTTCCCATTGATCTTTATCTTGGGTTTTTGGACAATTGCAGGTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTC</genome_strand>
        <mrna_strand>CCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAACAAGTTGAAGAAGGGTGCTAACGAATTCTCATCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG.............................................................................................................................GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTATACTTGCAAGGAATAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGAAAATCAAAGCATTTTGGCTTCATAAAATTTGAGTCCCCTGAG..........................................................................................................GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCCAGTCCGTCTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483342" ref_strand="+" ref_description="SGN-E483342 [cSTE-9-A17]">
      <seq>atcttcttctacttctactacggctagggttttcatttcttcgttgtagctcgccggtagtgatttgtcggattacggtagttgttggatctgccgatggcggaagaggaggagaggaacggcggtgatcggagtgagacaagtgactacacatcggaggatgaaggtactgaagattacaggcgtggaggttatcacgctgttcgaatcggagatacattcaaacaaggacgatatgtagtgcagagtaagcttggttggggacatttctccactgtttggcttgcttgggatacgcaaaaatctaggtatgttgctctaaaagttcaaaagagtgctcagcattatacagaagcggctatggatgagattaccatattaaaacagattgcagaggaagatccagatgataagaagtgtgtggtgaagctattggatcactttaagcattctgggcccaatggccagcatgtttgtatggtattcgagtacttgggagataatcttttgactctaattaagtactcagactatcgagggctatcaattcacaaggttaaagaaatttgcttccatatcttagtgggtttggattatttacatcgtcagctttctattattcacacagacttgaagccagaaaatattttgctcttatcnatgattgatcaaagtaaagatccaacaaagtcagatgctcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="20717" stop="26958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21016" g_stop="21321" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21322" i_stop="26260" i_length="4939">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26261" g_stop="26658" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="704" r_length="398" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E483342" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21016" e_stop="21321"/>
          <exon e_start="26261" e_stop="26658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTGCTACTTCTACGGCTAGGGTTTTGATTTTTTCGTTGTAGCTCGCCGGTATCGATTAGTCGGAGTACGGTGGTTGTTGGATCTGCCGATGGCGGAAGAGGAGGAGAGGAACGGCGGTGAGCGGAGTGAGACGAGTGACTACACATCGGAGGATGAAGGTACTGAAGATTACAGGCGTGGAGGTTATCACGCTGTTCGAATCGGAGATACATTCAAACAAGGACGATATGTAGTGCAGAGTAAGCTTGGTTGGGGACATTTCTCTACTGTTTGGCTCGCTTGGGATACGCAAAAATCTGTGAGCATTTCTACACTATCTGCTTACATTTTTCGTGGTATTAATTGCTCTGCAATAGCTGTCGTGTTTGCTTGTTTTGTTTAGCAACTTACTGTTTACTGTTAACAGATTTAGTTTTTGGACTTGTGATTTTGGTGTTTGAGTTTTTCTATGTTTGCGCGTGTGTTGTGTGTGTGAGAGAAGATACTTTGATATAGTAATTCGATATAGTAATTGTTGTCTGTTTGTAATTTCTATATACTTCTATGCTGCAATTGTTGTATTATTTGTTCGTTTTGTTTACTAGTATAACAATTTTTGCATCTTTGGACTTGTGATGTGTGAGAGAGAGGAGATACTTTGATGCAGTACTTGTTATCTGTTCACAGTTACAATATATTTATAAATGCTGCTATTGTTGTATTATTTGTTCATTCATTTAGCAACTTATTGTTTACTAGTGTAACAATTTTTGCATTTTTGGACTTGTGAGTTTGGTGTTTTAGTTTGACTTTGTTTGCCTGCATGTGTATGAAGACGAGATACTTCGATATATTACTCGTTATCTGTTCTCATTTTTGATACAACTGTGATGCTAAACTTGTTGTACTAGTATTTATTGTTCAGTTTAGCTATTTATGGTTTATTTTAGCAGCTTCCACATTTGTGAGTATTTCTTTTTTTTGAAATTGGTAACTGTTTCTATTGCTTTAAATCAGTACATGGGTTGTACTGCAAATCATATCTATATAATGAACTCTAAAGGCACTGTCCTATCCCTATAATGAGTAGATCTGATGACACCAACAACACAAAGTTAGAATATAATTCAGTTTTACTTGCTGCATATTACTCTCCCGATTCTCGGAAACTCTAAATTTCTCTCCTTCTAGATAGCACACCAAATTGTAGCAGGAAGGAAAGAATGTTTCTCCAGTTGCTTCTGTTCTTTGCTTGTAATTCTGCTTCTTTTCAACTGTATAAGGCCTTTGCCATTCTACCTGGCATGACCCATGAGATGTTTTTGAGCCTTAGGAATAGACTCCACAATTGGCCAATGACCTTGCACTGGATGAACAAGTAATTGACTGTTTCTGCAGTTTCCCCGCCGGAAAAACATCTAGAGCAAAGTGTAATCCCCCTCTTCATCAAATTCTCCTGTATCAACACAACTTCCTTAGCCAGTAACCACACAAACCAACCACTTTGTGTGGGATCTTGGCCTTCCAAATGTGTTTCCAGACCATTTGCGTACCTGCATAATTGGTTGGTTCAACTTCCTATCTTTTGCACTTACTTTAAAAGTTCTTTCACAGTTCCGTAACCACTGCAATCTGTCCTGCCTGTCTCCAAGACACTAAATTGTTCAATGACGCTAAAGAATTATGTTACTCTTGGAATTTCCCAATCATTGAGGTGCCTTCTAAAATATAATATTCCACCCATGAGGTGTCCTTAGTTCAGCTAATGTACTTTGTTGTTGAAGTACCAGAGTGTAGAGTGTGTATATCTGGGAGAAGTGTCTCTAGATTTCTTGCATCATGCCAATCCTACTTCCAAAATCTAGTTTTGGCGCCATCTACCACTTTAGTCTTGGTGTTTGGTTTTGAATTCATCCCATAGTGATTGTACGGATTTGCATAAACTAACACCATCGGGTGTGGTAACTTTCTTCGTCATCTAATTGTCACTTTCTTCATATTTTGCTTTTATGTTTGAGCCCTATAAATTCTGATTATCGTCGGAATACCTCTAAAGCCACGTCATTGTCAAAGCGTTATTTTGATTCTTTAGGTTCTTCATTCCTAAGCCACATTGTTTTGGATGGCAAAAGGCGACAAGGGCTTGCCTTGCCACGAGGCGAGGCACTCACCTTTTTGAATTAAGGCGCAAATTAATACGAAAAATTTATAATTTTAATTGCATGTATAAATATCCAAAATCTTAATAGCAATAACATATATTAGCAAATATTTCATTTCAAAAACTAATCGTAGATACTAAAAGTCTAGAACTTGAATGTCTCAAGAATTCCCAAGACAATTGACAAGCAATACTAGAACTCTAAACGTTTATTCTTCTTTAAGATTATCCAAATCTTGAAGATCAACATCCTCTTGATCATGATTATATTGCTCCTCGTCTTCTTCATTAATTAGTGTCTTCATCAATTAGTGTTTGGGTCCTACTTGAACTTCTAGATGCAATTTGTACTCCTTTGCCCTTGTCAAGTTCTCTTAATCTTAAGAAATTTCCCTAAGATGATAGATACTCTCGTTAGCTCCAATTGCATAGCAACACTACCCCAAGTAAGATCAGCTTCCTCATATATTGGTTCATCTTCTTTGTCTTCGGAGCATCCAACTAAACATTCATCTGACTCATCAATATTATCCAGGAGAATTGGATCAATGGTGTCACAAGCATTATAACGACTTTTCAATGTTCTATTGTACTTAATGTACACTAGATCATTGAGACGCGATGGTGCAAGCCTAGGAATGAATCTGCGCATAAGTTACAAATATTAACTAATAGATACTAATAATAATATAATATGAAAATAGGATATAAAATATTTTTCTTACGTGTTTAAACGCACTCCATGTTCGCTTACATACGGATGAGCTACAAGTTAAACTTAATACTTTCATGGCAAACTTTTGCAAATTTGGTGTTTGACTACCAAATAGTGACCACCATTCAACTTTTAAAAAATAAATTTTAAGGTTAATGAGTATAAATAAGTCAAATAATTTAGGTAAATCTATAGTATAAGGTATAAACTGTAAAGAGCTAAGTAAACTCACTTACCCGGTGACCTTGTGTCTCCGGCTCTTCGAGCCTGACCACAACCAAATAGTCCATTGCCATTTTGTACTTGAGAATCTTAGCTACTAGTAAATCTTGTATTGCTATATCGGGATTCATCTTCTCAAGACATGCATGATAATCTTGTATTGTTGGACAATCATTTATTAACATTGAGAAGCTGACCGAAGATATGCAGAACTGATGCATCGTCTCCATTTGAGACCAAATCCCATCTTCTCTAGCATACCCATATCCCAGTTGACATGGTCATATGTTTCTCAATATCTAATTTGCATAAAATGCCTGTTTATTTCAAACTTGACCGGGAATCTATAGCTTCAGTAGGTATTAGAACAACATCCATGATCTGCCTCCCCTTAATAAAAGCTAACTGTTGTGAGTTATAACAAGTTTGGACATCACTCTTTTTAGCATTTCGATGAGCACTTCTGTGAGAATTTTAAAGATGCTGCCCATCAAACTGAAAGGTCTAAAGTCTCTTAGTTCTTTAGCACCTTTTTGGAATCAGGGCTGTGAAGATAGCATTGAAACGTTTTTTGAACCTCCCTTGGTCATAGAAATGCTGAAAAGTCTTCATACTCTTGACCACTTCCCGACATTTGATGTAGAACCCCAATTTAAAGCCATCTGGTCTTGGTGCTTTATCCACTGCACATTGCTTTAAACTTCTCGTAAACTCCTCATCAAAATTTCTTTCTAGGTAATCCATTATCCCTTCTTTTGCTCCACTGGCCTCCAAACATGCCATTTTGACCCATCTATCCCCCACAAAGCTGCCTTACAAGTTACAACTCAGTGATATCCCCCTGTAATCTGGTTTCTTGTAGACAAATGATGTCAGCTTTCCAGTCCCCCATAATGTTCTTGATAACCTTCCTCTTTCCAGACCCATGTGAGTATTTCTAAACTTACATGTTCACATTTTTTATATACTTATTATGCTGCAATTACTGTAGTATTTGCTTGTTTTATTTAGCAACTCATAGTTTCTTGCAACAATTTTTGCATCTTGAACTTGTGATTTTGTTTTCTTCTGTTTTTTTTTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGGAAATACTTCGATAACTTGCTATCTGTTTGACATAGATGTGATGCTGCAGTTGTTGTACTAGTATTTATTGTTCAGCTGAACAATTAATGGTTTATGGTAACAACTTGCACATCTGTGAGTATTTCTAAACTATCTGTTCGCGTCTTGTATATACTTAATATGCTGCAGATGTTCTAGTGCTTCTTTGTGTTATTTTTCAAAGTATACTAGTATAACATTTTTTTTGTATATGGACTTGCGTATGTATTGTTTGAGTTTTTCTCTGCTTGTGTGTGAGAGAGAGAGGAGATACTTCGATATAGTACTTGTTATCTATTAGCATTTTATACGTATCTATTACGCTGCATTTGTTCTTTTTATTTTGTAATATATTGTTTGCTAGTATAATAATATTTTTGTATATGGACTTTCGTATATAGTGTTTTTGACTTTTTCTCTGTCCACTTGTGTGAGAGAGGTGATACTTCGATATAGTACTTGTTATCTGTTTGCATTTTCTATATACTTATTATGCTGCATTTGTTCATTTTACTTAGTAACCTAATGGTTACTAGTATAACAATCTTTTTTGTATATGGACTTGTGTATATAGAGTTTGAGTTTTTCTCTGTATGCGAGTGTGTGTGAGAGAGGGAGAGATACTTTGATATAGTACCTATTATCCGTTCACATATTCTATTTACTTATTATGCTGCATTTGTTCTAGTATTGTTATTTTATTTAGCAATGAATTGTTTAATAGTATAACAAATGTTTGAGTTTCCTCTGTCTGCTTGTGTGTGAAAGAGGAGATACATTGATTTAGTACTTGTTATCTGTTCTCATTTTTGACGGAGATGTGATGCTACAGTTATTCTAGTTATTATTGTTTGGTGTAGCAACTTATGGTTTATTGTAGTGTTTACTGTTTGGTGTAGCAATTATTGTAGTGTTTATTGTGCACTAGTGTTTACGGTTCTTATGAATTTTCTGTGGTTTTTGCATAAAATTCTCTGACATGTGGATTGCCTTAGCTAATTGTTGGTTATGTCTTGTGAGGGATAGAGGTTTGTTGCTCTAAAAGTTCAAAAGAGTGCTCAACATTATACAGAAGCGGCTATGGATGAGATTACCATATTAAAGCAGATTGCAGAGGGAGATCCAGATGATAAGAAGTGTGTGGTGAAGTTATTGGATCACTTTAAGCATTCCGGGCCCAATGGCCAGCATGTTTGTATGGTATTCGAATACTTGGGAGATAATCTTTTGACTCTAATTAAGTACTCAGACTATCGAGGGCTATCAATTCACAAGGTTAAAGAAATTTGCTTCCATATCTTAGTGGGTTTGGATTATTTACATCGTGAGCTTTCTATTATTCACACAGACTTGAAGCCAGAAAATATTTTGCTCTTATCAATGATTGATCAAAGTAAAGATCCAACAAAGTCAGACGCTCCCCT</genome_strand>
        <mrna_strand>ATCTTCTTCTACTTCTACTACGGCTAGGGTTTTCATTTCTTCGTTGTAGCTCGCCGGTAGTGATTTGTCGGATTACGGTAGTTGTTGGATCTGCCGATGGCGGAAGAGGAGGAGAGGAACGGCGGTGATCGGAGTGAGACAAGTGACTACACATCGGAGGATGAAGGTACTGAAGATTACAGGCGTGGAGGTTATCACGCTGTTCGAATCGGAGATACATTCAAACAAGGACGATATGTAGTGCAGAGTAAGCTTGGTTGGGGACATTTCTCCACTGTTTGGCTTGCTTGGGATACGCAAAAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTATGTTGCTCTAAAAGTTCAAAAGAGTGCTCAGCATTATACAGAAGCGGCTATGGATGAGATTACCATATTAAAACAGATTGCAGAGGAAGATCCAGATGATAAGAAGTGTGTGGTGAAGCTATTGGATCACTTTAAGCATTCTGGGCCCAATGGCCAGCATGTTTGTATGGTATTCGAGTACTTGGGAGATAATCTTTTGACTCTAATTAAGTACTCAGACTATCGAGGGCTATCAATTCACAAGGTTAAAGAAATTTGCTTCCATATCTTAGTGGGTTTGGATTATTTACATCGTCAGCTTTCTATTATTCACACAGACTTGAAGCCAGAAAATATTTTGCTCTTATCNATGATTGATCAAAGTAAAGATCCAACAAAGTCAGATGCTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419418" ref_strand="+" ref_description="SGN-E419418 [STM-29-H9]">
      <seq>actacggctagggttttcatttcttcattgtagctcgccggtagcgatttgtcggagtacggtggttgttggatctgccgatggcggaagaggaagagaggaacggtggtgatcggagtgagacaagtgactacacatcggaggatgagggtactgaagattacaggcgtggaggttatcacgctgttcgaatgggagatacattcaaacaaggacgatatgtagtgcagagtaagcttggttggggacatttctccactgtttggctcgcttgggatacgcaaaaatctaggtatgttgctctaaaagttcaaaagagtgctcagcattatacagaagcggctatggatgagattaccatattaaaacagattgcagagggagatccagatgataagaagtgtgtggtgaagctattggatcactttaagcattccgggcccaatggccagcacgtttgtatggtattcgagtacttgggagataatcttttgactctaattaagtactcagactatcgagggctatcaattcacaaggttaaagaaatttgcttccatatcttagtgggtttggattatttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="20733" stop="26856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21032" g_stop="21321" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21322" i_stop="26260" i_length="4939">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26261" g_stop="26556" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="586" r_length="296" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E419418" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21032" e_stop="21321"/>
          <exon e_start="26261" e_stop="26556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACGGCTAGGGTTTTGATTTTTTCGTTGTAGCTCGCCGGTATCGATTAGTCGGAGTACGGTGGTTGTTGGATCTGCCGATGGCGGAAGAGGAGGAGAGGAACGGCGGTGAGCGGAGTGAGACGAGTGACTACACATCGGAGGATGAAGGTACTGAAGATTACAGGCGTGGAGGTTATCACGCTGTTCGAATCGGAGATACATTCAAACAAGGACGATATGTAGTGCAGAGTAAGCTTGGTTGGGGACATTTCTCTACTGTTTGGCTCGCTTGGGATACGCAAAAATCTGTGAGCATTTCTACACTATCTGCTTACATTTTTCGTGGTATTAATTGCTCTGCAATAGCTGTCGTGTTTGCTTGTTTTGTTTAGCAACTTACTGTTTACTGTTAACAGATTTAGTTTTTGGACTTGTGATTTTGGTGTTTGAGTTTTTCTATGTTTGCGCGTGTGTTGTGTGTGTGAGAGAAGATACTTTGATATAGTAATTCGATATAGTAATTGTTGTCTGTTTGTAATTTCTATATACTTCTATGCTGCAATTGTTGTATTATTTGTTCGTTTTGTTTACTAGTATAACAATTTTTGCATCTTTGGACTTGTGATGTGTGAGAGAGAGGAGATACTTTGATGCAGTACTTGTTATCTGTTCACAGTTACAATATATTTATAAATGCTGCTATTGTTGTATTATTTGTTCATTCATTTAGCAACTTATTGTTTACTAGTGTAACAATTTTTGCATTTTTGGACTTGTGAGTTTGGTGTTTTAGTTTGACTTTGTTTGCCTGCATGTGTATGAAGACGAGATACTTCGATATATTACTCGTTATCTGTTCTCATTTTTGATACAACTGTGATGCTAAACTTGTTGTACTAGTATTTATTGTTCAGTTTAGCTATTTATGGTTTATTTTAGCAGCTTCCACATTTGTGAGTATTTCTTTTTTTTGAAATTGGTAACTGTTTCTATTGCTTTAAATCAGTACATGGGTTGTACTGCAAATCATATCTATATAATGAACTCTAAAGGCACTGTCCTATCCCTATAATGAGTAGATCTGATGACACCAACAACACAAAGTTAGAATATAATTCAGTTTTACTTGCTGCATATTACTCTCCCGATTCTCGGAAACTCTAAATTTCTCTCCTTCTAGATAGCACACCAAATTGTAGCAGGAAGGAAAGAATGTTTCTCCAGTTGCTTCTGTTCTTTGCTTGTAATTCTGCTTCTTTTCAACTGTATAAGGCCTTTGCCATTCTACCTGGCATGACCCATGAGATGTTTTTGAGCCTTAGGAATAGACTCCACAATTGGCCAATGACCTTGCACTGGATGAACAAGTAATTGACTGTTTCTGCAGTTTCCCCGCCGGAAAAACATCTAGAGCAAAGTGTAATCCCCCTCTTCATCAAATTCTCCTGTATCAACACAACTTCCTTAGCCAGTAACCACACAAACCAACCACTTTGTGTGGGATCTTGGCCTTCCAAATGTGTTTCCAGACCATTTGCGTACCTGCATAATTGGTTGGTTCAACTTCCTATCTTTTGCACTTACTTTAAAAGTTCTTTCACAGTTCCGTAACCACTGCAATCTGTCCTGCCTGTCTCCAAGACACTAAATTGTTCAATGACGCTAAAGAATTATGTTACTCTTGGAATTTCCCAATCATTGAGGTGCCTTCTAAAATATAATATTCCACCCATGAGGTGTCCTTAGTTCAGCTAATGTACTTTGTTGTTGAAGTACCAGAGTGTAGAGTGTGTATATCTGGGAGAAGTGTCTCTAGATTTCTTGCATCATGCCAATCCTACTTCCAAAATCTAGTTTTGGCGCCATCTACCACTTTAGTCTTGGTGTTTGGTTTTGAATTCATCCCATAGTGATTGTACGGATTTGCATAAACTAACACCATCGGGTGTGGTAACTTTCTTCGTCATCTAATTGTCACTTTCTTCATATTTTGCTTTTATGTTTGAGCCCTATAAATTCTGATTATCGTCGGAATACCTCTAAAGCCACGTCATTGTCAAAGCGTTATTTTGATTCTTTAGGTTCTTCATTCCTAAGCCACATTGTTTTGGATGGCAAAAGGCGACAAGGGCTTGCCTTGCCACGAGGCGAGGCACTCACCTTTTTGAATTAAGGCGCAAATTAATACGAAAAATTTATAATTTTAATTGCATGTATAAATATCCAAAATCTTAATAGCAATAACATATATTAGCAAATATTTCATTTCAAAAACTAATCGTAGATACTAAAAGTCTAGAACTTGAATGTCTCAAGAATTCCCAAGACAATTGACAAGCAATACTAGAACTCTAAACGTTTATTCTTCTTTAAGATTATCCAAATCTTGAAGATCAACATCCTCTTGATCATGATTATATTGCTCCTCGTCTTCTTCATTAATTAGTGTCTTCATCAATTAGTGTTTGGGTCCTACTTGAACTTCTAGATGCAATTTGTACTCCTTTGCCCTTGTCAAGTTCTCTTAATCTTAAGAAATTTCCCTAAGATGATAGATACTCTCGTTAGCTCCAATTGCATAGCAACACTACCCCAAGTAAGATCAGCTTCCTCATATATTGGTTCATCTTCTTTGTCTTCGGAGCATCCAACTAAACATTCATCTGACTCATCAATATTATCCAGGAGAATTGGATCAATGGTGTCACAAGCATTATAACGACTTTTCAATGTTCTATTGTACTTAATGTACACTAGATCATTGAGACGCGATGGTGCAAGCCTAGGAATGAATCTGCGCATAAGTTACAAATATTAACTAATAGATACTAATAATAATATAATATGAAAATAGGATATAAAATATTTTTCTTACGTGTTTAAACGCACTCCATGTTCGCTTACATACGGATGAGCTACAAGTTAAACTTAATACTTTCATGGCAAACTTTTGCAAATTTGGTGTTTGACTACCAAATAGTGACCACCATTCAACTTTTAAAAAATAAATTTTAAGGTTAATGAGTATAAATAAGTCAAATAATTTAGGTAAATCTATAGTATAAGGTATAAACTGTAAAGAGCTAAGTAAACTCACTTACCCGGTGACCTTGTGTCTCCGGCTCTTCGAGCCTGACCACAACCAAATAGTCCATTGCCATTTTGTACTTGAGAATCTTAGCTACTAGTAAATCTTGTATTGCTATATCGGGATTCATCTTCTCAAGACATGCATGATAATCTTGTATTGTTGGACAATCATTTATTAACATTGAGAAGCTGACCGAAGATATGCAGAACTGATGCATCGTCTCCATTTGAGACCAAATCCCATCTTCTCTAGCATACCCATATCCCAGTTGACATGGTCATATGTTTCTCAATATCTAATTTGCATAAAATGCCTGTTTATTTCAAACTTGACCGGGAATCTATAGCTTCAGTAGGTATTAGAACAACATCCATGATCTGCCTCCCCTTAATAAAAGCTAACTGTTGTGAGTTATAACAAGTTTGGACATCACTCTTTTTAGCATTTCGATGAGCACTTCTGTGAGAATTTTAAAGATGCTGCCCATCAAACTGAAAGGTCTAAAGTCTCTTAGTTCTTTAGCACCTTTTTGGAATCAGGGCTGTGAAGATAGCATTGAAACGTTTTTTGAACCTCCCTTGGTCATAGAAATGCTGAAAAGTCTTCATACTCTTGACCACTTCCCGACATTTGATGTAGAACCCCAATTTAAAGCCATCTGGTCTTGGTGCTTTATCCACTGCACATTGCTTTAAACTTCTCGTAAACTCCTCATCAAAATTTCTTTCTAGGTAATCCATTATCCCTTCTTTTGCTCCACTGGCCTCCAAACATGCCATTTTGACCCATCTATCCCCCACAAAGCTGCCTTACAAGTTACAACTCAGTGATATCCCCCTGTAATCTGGTTTCTTGTAGACAAATGATGTCAGCTTTCCAGTCCCCCATAATGTTCTTGATAACCTTCCTCTTTCCAGACCCATGTGAGTATTTCTAAACTTACATGTTCACATTTTTTATATACTTATTATGCTGCAATTACTGTAGTATTTGCTTGTTTTATTTAGCAACTCATAGTTTCTTGCAACAATTTTTGCATCTTGAACTTGTGATTTTGTTTTCTTCTGTTTTTTTTTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGGAAATACTTCGATAACTTGCTATCTGTTTGACATAGATGTGATGCTGCAGTTGTTGTACTAGTATTTATTGTTCAGCTGAACAATTAATGGTTTATGGTAACAACTTGCACATCTGTGAGTATTTCTAAACTATCTGTTCGCGTCTTGTATATACTTAATATGCTGCAGATGTTCTAGTGCTTCTTTGTGTTATTTTTCAAAGTATACTAGTATAACATTTTTTTTGTATATGGACTTGCGTATGTATTGTTTGAGTTTTTCTCTGCTTGTGTGTGAGAGAGAGAGGAGATACTTCGATATAGTACTTGTTATCTATTAGCATTTTATACGTATCTATTACGCTGCATTTGTTCTTTTTATTTTGTAATATATTGTTTGCTAGTATAATAATATTTTTGTATATGGACTTTCGTATATAGTGTTTTTGACTTTTTCTCTGTCCACTTGTGTGAGAGAGGTGATACTTCGATATAGTACTTGTTATCTGTTTGCATTTTCTATATACTTATTATGCTGCATTTGTTCATTTTACTTAGTAACCTAATGGTTACTAGTATAACAATCTTTTTTGTATATGGACTTGTGTATATAGAGTTTGAGTTTTTCTCTGTATGCGAGTGTGTGTGAGAGAGGGAGAGATACTTTGATATAGTACCTATTATCCGTTCACATATTCTATTTACTTATTATGCTGCATTTGTTCTAGTATTGTTATTTTATTTAGCAATGAATTGTTTAATAGTATAACAAATGTTTGAGTTTCCTCTGTCTGCTTGTGTGTGAAAGAGGAGATACATTGATTTAGTACTTGTTATCTGTTCTCATTTTTGACGGAGATGTGATGCTACAGTTATTCTAGTTATTATTGTTTGGTGTAGCAACTTATGGTTTATTGTAGTGTTTACTGTTTGGTGTAGCAATTATTGTAGTGTTTATTGTGCACTAGTGTTTACGGTTCTTATGAATTTTCTGTGGTTTTTGCATAAAATTCTCTGACATGTGGATTGCCTTAGCTAATTGTTGGTTATGTCTTGTGAGGGATAGAGGTTTGTTGCTCTAAAAGTTCAAAAGAGTGCTCAACATTATACAGAAGCGGCTATGGATGAGATTACCATATTAAAGCAGATTGCAGAGGGAGATCCAGATGATAAGAAGTGTGTGGTGAAGTTATTGGATCACTTTAAGCATTCCGGGCCCAATGGCCAGCATGTTTGTATGGTATTCGAATACTTGGGAGATAATCTTTTGACTCTAATTAAGTACTCAGACTATCGAGGGCTATCAATTCACAAGGTTAAAGAAATTTGCTTCCATATCTTAGTGGGTTTGGATTATTTACA</genome_strand>
        <mrna_strand>ACTACGGCTAGGGTTTTCATTTCTTCATTGTAGCTCGCCGGTAGCGATTTGTCGGAGTACGGTGGTTGTTGGATCTGCCGATGGCGGAAGAGGAAGAGAGGAACGGTGGTGATCGGAGTGAGACAAGTGACTACACATCGGAGGATGAGGGTACTGAAGATTACAGGCGTGGAGGTTATCACGCTGTTCGAATGGGAGATACATTCAAACAAGGACGATATGTAGTGCAGAGTAAGCTTGGTTGGGGACATTTCTCCACTGTTTGGCTCGCTTGGGATACGCAAAAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTATGTTGCTCTAAAAGTTCAAAAGAGTGCTCAGCATTATACAGAAGCGGCTATGGATGAGATTACCATATTAAAACAGATTGCAGAGGGAGATCCAGATGATAAGAAGTGTGTGGTGAAGCTATTGGATCACTTTAAGCATTCCGGGCCCAATGGCCAGCACGTTTGTATGGTATTCGAGTACTTGGGAGATAATCTTTTGACTCTAATTAAGTACTCAGACTATCGAGGGCTATCAATTCACAAGGTTAAAGAAATTTGCTTCCATATCTTAGTGGGTTTGGATTATTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335980" ref_strand="+" ref_description="SGN-E335980 [cTOE-6-H21]">
      <seq>tttgattttttcgttgtagctcgccggtatcgattagtcggagtacggtggttgttggatctgccgatggcggaagaggaggagaggaacggcggtgagcggagtgagacgagtgactacacatcggaggatgaaggtactgaagattacaggcgtggaggttatcacgctgttcgaatcggagatacattcaaacaaggacgatatgtagtgcagagtaagcttggttggggacatttctctactgtttggctcgcttgggatacgcaaaaatctaggtttgttgctctaaaagttcaaaagagtgctcaacattatacagaagcggctatggatgagattaccatattaaagcagattgcagagggagatccagatgataagaagtgtgtggtgaagttattggatcactttaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="20746" stop="26703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21046" g_stop="21321" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21322" i_stop="26260" i_length="4939">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26261" g_stop="26403" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="419" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E335980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21046" e_stop="21321"/>
          <exon e_start="26261" e_stop="26403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTTTTCGTTGTAGCTCGCCGGTATCGATTAGTCGGAGTACGGTGGTTGTTGGATCTGCCGATGGCGGAAGAGGAGGAGAGGAACGGCGGTGAGCGGAGTGAGACGAGTGACTACACATCGGAGGATGAAGGTACTGAAGATTACAGGCGTGGAGGTTATCACGCTGTTCGAATCGGAGATACATTCAAACAAGGACGATATGTAGTGCAGAGTAAGCTTGGTTGGGGACATTTCTCTACTGTTTGGCTCGCTTGGGATACGCAAAAATCTGTGAGCATTTCTACACTATCTGCTTACATTTTTCGTGGTATTAATTGCTCTGCAATAGCTGTCGTGTTTGCTTGTTTTGTTTAGCAACTTACTGTTTACTGTTAACAGATTTAGTTTTTGGACTTGTGATTTTGGTGTTTGAGTTTTTCTATGTTTGCGCGTGTGTTGTGTGTGTGAGAGAAGATACTTTGATATAGTAATTCGATATAGTAATTGTTGTCTGTTTGTAATTTCTATATACTTCTATGCTGCAATTGTTGTATTATTTGTTCGTTTTGTTTACTAGTATAACAATTTTTGCATCTTTGGACTTGTGATGTGTGAGAGAGAGGAGATACTTTGATGCAGTACTTGTTATCTGTTCACAGTTACAATATATTTATAAATGCTGCTATTGTTGTATTATTTGTTCATTCATTTAGCAACTTATTGTTTACTAGTGTAACAATTTTTGCATTTTTGGACTTGTGAGTTTGGTGTTTTAGTTTGACTTTGTTTGCCTGCATGTGTATGAAGACGAGATACTTCGATATATTACTCGTTATCTGTTCTCATTTTTGATACAACTGTGATGCTAAACTTGTTGTACTAGTATTTATTGTTCAGTTTAGCTATTTATGGTTTATTTTAGCAGCTTCCACATTTGTGAGTATTTCTTTTTTTTGAAATTGGTAACTGTTTCTATTGCTTTAAATCAGTACATGGGTTGTACTGCAAATCATATCTATATAATGAACTCTAAAGGCACTGTCCTATCCCTATAATGAGTAGATCTGATGACACCAACAACACAAAGTTAGAATATAATTCAGTTTTACTTGCTGCATATTACTCTCCCGATTCTCGGAAACTCTAAATTTCTCTCCTTCTAGATAGCACACCAAATTGTAGCAGGAAGGAAAGAATGTTTCTCCAGTTGCTTCTGTTCTTTGCTTGTAATTCTGCTTCTTTTCAACTGTATAAGGCCTTTGCCATTCTACCTGGCATGACCCATGAGATGTTTTTGAGCCTTAGGAATAGACTCCACAATTGGCCAATGACCTTGCACTGGATGAACAAGTAATTGACTGTTTCTGCAGTTTCCCCGCCGGAAAAACATCTAGAGCAAAGTGTAATCCCCCTCTTCATCAAATTCTCCTGTATCAACACAACTTCCTTAGCCAGTAACCACACAAACCAACCACTTTGTGTGGGATCTTGGCCTTCCAAATGTGTTTCCAGACCATTTGCGTACCTGCATAATTGGTTGGTTCAACTTCCTATCTTTTGCACTTACTTTAAAAGTTCTTTCACAGTTCCGTAACCACTGCAATCTGTCCTGCCTGTCTCCAAGACACTAAATTGTTCAATGACGCTAAAGAATTATGTTACTCTTGGAATTTCCCAATCATTGAGGTGCCTTCTAAAATATAATATTCCACCCATGAGGTGTCCTTAGTTCAGCTAATGTACTTTGTTGTTGAAGTACCAGAGTGTAGAGTGTGTATATCTGGGAGAAGTGTCTCTAGATTTCTTGCATCATGCCAATCCTACTTCCAAAATCTAGTTTTGGCGCCATCTACCACTTTAGTCTTGGTGTTTGGTTTTGAATTCATCCCATAGTGATTGTACGGATTTGCATAAACTAACACCATCGGGTGTGGTAACTTTCTTCGTCATCTAATTGTCACTTTCTTCATATTTTGCTTTTATGTTTGAGCCCTATAAATTCTGATTATCGTCGGAATACCTCTAAAGCCACGTCATTGTCAAAGCGTTATTTTGATTCTTTAGGTTCTTCATTCCTAAGCCACATTGTTTTGGATGGCAAAAGGCGACAAGGGCTTGCCTTGCCACGAGGCGAGGCACTCACCTTTTTGAATTAAGGCGCAAATTAATACGAAAAATTTATAATTTTAATTGCATGTATAAATATCCAAAATCTTAATAGCAATAACATATATTAGCAAATATTTCATTTCAAAAACTAATCGTAGATACTAAAAGTCTAGAACTTGAATGTCTCAAGAATTCCCAAGACAATTGACAAGCAATACTAGAACTCTAAACGTTTATTCTTCTTTAAGATTATCCAAATCTTGAAGATCAACATCCTCTTGATCATGATTATATTGCTCCTCGTCTTCTTCATTAATTAGTGTCTTCATCAATTAGTGTTTGGGTCCTACTTGAACTTCTAGATGCAATTTGTACTCCTTTGCCCTTGTCAAGTTCTCTTAATCTTAAGAAATTTCCCTAAGATGATAGATACTCTCGTTAGCTCCAATTGCATAGCAACACTACCCCAAGTAAGATCAGCTTCCTCATATATTGGTTCATCTTCTTTGTCTTCGGAGCATCCAACTAAACATTCATCTGACTCATCAATATTATCCAGGAGAATTGGATCAATGGTGTCACAAGCATTATAACGACTTTTCAATGTTCTATTGTACTTAATGTACACTAGATCATTGAGACGCGATGGTGCAAGCCTAGGAATGAATCTGCGCATAAGTTACAAATATTAACTAATAGATACTAATAATAATATAATATGAAAATAGGATATAAAATATTTTTCTTACGTGTTTAAACGCACTCCATGTTCGCTTACATACGGATGAGCTACAAGTTAAACTTAATACTTTCATGGCAAACTTTTGCAAATTTGGTGTTTGACTACCAAATAGTGACCACCATTCAACTTTTAAAAAATAAATTTTAAGGTTAATGAGTATAAATAAGTCAAATAATTTAGGTAAATCTATAGTATAAGGTATAAACTGTAAAGAGCTAAGTAAACTCACTTACCCGGTGACCTTGTGTCTCCGGCTCTTCGAGCCTGACCACAACCAAATAGTCCATTGCCATTTTGTACTTGAGAATCTTAGCTACTAGTAAATCTTGTATTGCTATATCGGGATTCATCTTCTCAAGACATGCATGATAATCTTGTATTGTTGGACAATCATTTATTAACATTGAGAAGCTGACCGAAGATATGCAGAACTGATGCATCGTCTCCATTTGAGACCAAATCCCATCTTCTCTAGCATACCCATATCCCAGTTGACATGGTCATATGTTTCTCAATATCTAATTTGCATAAAATGCCTGTTTATTTCAAACTTGACCGGGAATCTATAGCTTCAGTAGGTATTAGAACAACATCCATGATCTGCCTCCCCTTAATAAAAGCTAACTGTTGTGAGTTATAACAAGTTTGGACATCACTCTTTTTAGCATTTCGATGAGCACTTCTGTGAGAATTTTAAAGATGCTGCCCATCAAACTGAAAGGTCTAAAGTCTCTTAGTTCTTTAGCACCTTTTTGGAATCAGGGCTGTGAAGATAGCATTGAAACGTTTTTTGAACCTCCCTTGGTCATAGAAATGCTGAAAAGTCTTCATACTCTTGACCACTTCCCGACATTTGATGTAGAACCCCAATTTAAAGCCATCTGGTCTTGGTGCTTTATCCACTGCACATTGCTTTAAACTTCTCGTAAACTCCTCATCAAAATTTCTTTCTAGGTAATCCATTATCCCTTCTTTTGCTCCACTGGCCTCCAAACATGCCATTTTGACCCATCTATCCCCCACAAAGCTGCCTTACAAGTTACAACTCAGTGATATCCCCCTGTAATCTGGTTTCTTGTAGACAAATGATGTCAGCTTTCCAGTCCCCCATAATGTTCTTGATAACCTTCCTCTTTCCAGACCCATGTGAGTATTTCTAAACTTACATGTTCACATTTTTTATATACTTATTATGCTGCAATTACTGTAGTATTTGCTTGTTTTATTTAGCAACTCATAGTTTCTTGCAACAATTTTTGCATCTTGAACTTGTGATTTTGTTTTCTTCTGTTTTTTTTTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGGAAATACTTCGATAACTTGCTATCTGTTTGACATAGATGTGATGCTGCAGTTGTTGTACTAGTATTTATTGTTCAGCTGAACAATTAATGGTTTATGGTAACAACTTGCACATCTGTGAGTATTTCTAAACTATCTGTTCGCGTCTTGTATATACTTAATATGCTGCAGATGTTCTAGTGCTTCTTTGTGTTATTTTTCAAAGTATACTAGTATAACATTTTTTTTGTATATGGACTTGCGTATGTATTGTTTGAGTTTTTCTCTGCTTGTGTGTGAGAGAGAGAGGAGATACTTCGATATAGTACTTGTTATCTATTAGCATTTTATACGTATCTATTACGCTGCATTTGTTCTTTTTATTTTGTAATATATTGTTTGCTAGTATAATAATATTTTTGTATATGGACTTTCGTATATAGTGTTTTTGACTTTTTCTCTGTCCACTTGTGTGAGAGAGGTGATACTTCGATATAGTACTTGTTATCTGTTTGCATTTTCTATATACTTATTATGCTGCATTTGTTCATTTTACTTAGTAACCTAATGGTTACTAGTATAACAATCTTTTTTGTATATGGACTTGTGTATATAGAGTTTGAGTTTTTCTCTGTATGCGAGTGTGTGTGAGAGAGGGAGAGATACTTTGATATAGTACCTATTATCCGTTCACATATTCTATTTACTTATTATGCTGCATTTGTTCTAGTATTGTTATTTTATTTAGCAATGAATTGTTTAATAGTATAACAAATGTTTGAGTTTCCTCTGTCTGCTTGTGTGTGAAAGAGGAGATACATTGATTTAGTACTTGTTATCTGTTCTCATTTTTGACGGAGATGTGATGCTACAGTTATTCTAGTTATTATTGTTTGGTGTAGCAACTTATGGTTTATTGTAGTGTTTACTGTTTGGTGTAGCAATTATTGTAGTGTTTATTGTGCACTAGTGTTTACGGTTCTTATGAATTTTCTGTGGTTTTTGCATAAAATTCTCTGACATGTGGATTGCCTTAGCTAATTGTTGGTTATGTCTTGTGAGGGATAGAGGTTTGTTGCTCTAAAAGTTCAAAAGAGTGCTCAACATTATACAGAAGCGGCTATGGATGAGATTACCATATTAAAGCAGATTGCAGAGGGAGATCCAGATGATAAGAAGTGTGTGGTGAAGTTATTGGATCACTTTAAGCA</genome_strand>
        <mrna_strand>TTTGATTTTTTCGTTGTAGCTCGCCGGTATCGATTAGTCGGAGTACGGTGGTTGTTGGATCTGCCGATGGCGGAAGAGGAGGAGAGGAACGGCGGTGAGCGGAGTGAGACGAGTGACTACACATCGGAGGATGAAGGTACTGAAGATTACAGGCGTGGAGGTTATCACGCTGTTCGAATCGGAGATACATTCAAACAAGGACGATATGTAGTGCAGAGTAAGCTTGGTTGGGGACATTTCTCTACTGTTTGGCTCGCTTGGGATACGCAAAAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTGTTGCTCTAAAAGTTCAAAAGAGTGCTCAACATTATACAGAAGCGGCTATGGATGAGATTACCATATTAAAGCAGATTGCAGAGGGAGATCCAGATGATAAGAAGTGTGTGGTGAAGTTATTGGATCACTTTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212003" ref_strand="+" ref_description="SGN-E212003 [cLEC-66-N5]">
      <seq>aacaacagatggaacaagggatggacagcagagaactcaaagatctaaaagaggcagtcgatccatgaggcagaaactattgactgatgtggaccttaggtgcaaattagttgactttggcaatgcatgctggacgtataaacaattcacaagtgatatccagacaagacagtatagatgtcctgaggttatcctaggatctaaatattctacttcagctgatctttggtcctttgcttgcatttgctttgagcttgccactggtgatgttctttttgatccacacagtggtgacaattatgacagggatgaggatcacttggcccttatgatggagcttcttggaatgatgccacgcaagattgccttaggtgggcgttattcacgagagctcttcaaccgaagtggagacttgagacatatcagacgattgcggttctggcctatgaataaagtgcttagggaaaagtatgagttcagtgaacaagatgctcatgaactggctgatttcttagttccaatacttgattttgtgcctgagaaagacctactgcagctcaatgtctcaatcatccatggattgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="26629" stop="29987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26929" g_stop="27241" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27242" i_stop="29296" i_length="2055">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29297" g_stop="29344" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="361" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29345" i_stop="29460" i_length="116">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.011" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29461" g_stop="29687" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="587" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E212003" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26929" e_stop="27241"/>
          <exon e_start="29297" e_stop="29344"/>
          <exon e_start="29461" e_stop="29687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAGATGGAACAAGGGATGGACAGCAGAGAACTCAAAGATCTAAAAGAGGCAGTCGATCCATGAGGCAGAAACTATTGACTGATGTGGACCTTAGGTGCAAATTAGTTGACTTTGGCAATGCATGCTGGACGTATAAACAATTCACAAGTGATATCCAGACAAGACAGTATAGATGTCCTGAGGTTATCCTAGGATCTAAATATTCTACTTCAGCTGATCTTTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCACACAGTGGTGACAATTATGACAGGGATGAGGTATAGCAACTCTACTTTCAATATTTTAACCACTTAGATGCAAGCATGTGTAGATCGTTATTTTAGGAGTTAAATTATTATTTGATTTCATTATTTTCTAAATTAATGAATTAAGTTCAAGGAAAGGAAAGGAAAGGAATCGTTTGACAAGATATATGTTCCATTCTGTGTTTGGGTTTTGTACACTTGATGTGTACATGTGATACCTATTTCTGGGTGCTCAACTGCTCATTCTTCTAAAACATTGATTTTAAAAACAATACCTCTTCAATGGGATATAACTTCAGCTGTGGTGAAGGGGATGGCATTTATCCCTGATGATACCACTGGAACAGAAGTAAAGAGACAATGACTTGATTTGATCTGCCAACTTGTGTGGTGTCAAAATCAATCATCCGATCAATCCAGTCTTGCCAGGGCAAACTGGAAGCGCATGTAAGCCTTAAAGTGAGGCTCAACATAGACTTGGTGTTTCAGTGGCTTAGGCGAAATGCTTTTGCGAAACTGCTAAGAGGATGAGGTGTTTATCTTACCTAAAACATTGCAACCAGCTATTTTCAAATTAGATTGTTTTACAAGGTTATCTTGAGAAAAAGCAATAGTGAAAGACAGAATAGTTAGCAAAATGATATATTAATTGTTAATTATACTTTTTGGATATATATATTGCTTATTAGGTACTATAGAATATTAGAAATTTACAAAAGAAAGCTAGACATTTGATTTGAATTAGAAACTTAGTTGCAAATTGCAGATGATACATAAATTTAATATGGTATTTGAACATTACTGATGTATTCATTGCAGTTAGTCAATTCATCCAGCCATATAATTCTTGTTTTTGTGTAAGCATATTTCTTTCTATTTAAACCTCATGTTTTAATTATGCTTGTACTTAAAAAGCATTTGTGTCTTTGCGCTTTACACCTTTGACAATACTGAATCAGACAATTATTGAGTCCCAATCCCAAACTAGTTGGATCAGCAATATAACCTTTTTTTGGTTTGTGCAATTTGTCAATAGCTTGGGATTGAGGTGTGGTTGTTGCTCTATTTGTAAGTAGGTGTCTTTCAAAGCCTTCACCCCCAAAAAGAGAGTGTTTGTCTTTTGAGTCTAAGAGGGGGTTTCTATGTTATCCCTAACTCAGACCTAAAGTAAGAGTAACGACAACAAAAACTTATTCAACAAGTTGGGCACTGCCTATATGGATCATTTGTTTATAACCTGTTTGATTCTTAGCCTATCTCATCCGTTTGTAGCTCCTTCAATTGCCATAGTGTTGCACCTATGAGTTGGTGCATTTGGAGGTATAGGTAGGATATGATGAAACTATCTTATGTGATTTCCCTAGTTTTATACGTTGTGTGTGCTACTTATAGCTTGTATTCAATATTGTAGATGTCATATCAGTTTTAATATCAACATTTCTATGACACTCATCTTGGGAACTTCATGCTCCTGCATATTTACTTGTATTTCTCTTTAACCAAAATGTTGTAAATGTCCTCAACTTTAAATAAACATAGAAGAGTTAAAGTTGGGAAAATGAAACCTAAAATGGAGAATATGGAATGCATTTGTGGTTTCAAATTATTACTTCAGTACTCCTATGAATATGCAAATTGTGTCTTATCTCTCTGAAATATGTTCTTCCTATGCTTCCTAGATGTCATTACTGTATATTATTGACCCTATCATAGTTCTGAGGCTTGCCTGAATAGATTGTTGGGAGTACCAGCTAAGCTATTAGTCTTCGGGGATCTTTTAATTGATCAGTTCGTTGAGTTTGTGGATGGTGAAGCAGTCACTTTCTTAGTGAATCACAGTATACTTTCATCTGTTTTAGATTAATGCCAACATTTACATGTCACTCTCATGGCATTGAGTCTTGTTACTGACATTCACATGATTGCATATAAGTTAGTACAAGACCAGTTCTTTTTTAGTTTTTGGCAGGTTTTGTTCATTAAGATATTTTAAATAATTTTGTAGTTTAATGCCTTCAATAGCGGGTTCAGTTCAATGATATTTTCTTTGTTGCCCTTTCTGCGCAGGATCACTTGGCCCTTATGATGGAGCTTCTTGGAATGATGCCACGCAAGGTGATTTTTGGTTTCTGGTTAATGTCTTTCTTGTTGAATTAAAAAAAAGGAAAAGAGAAGTAGGAGAGTGAATCTTGTCATTCAAAGAGGAGAAGTGATCTTAAGTTTGTGTGCAGATTGCCTTAGGTGGGCGTTATTCACGAGAGCTCTTCAACCGAAGTGGAGACTTGAGACATATCAGACGATTGCGGTTCTGGCCTATGAATAAAGTGCTTAGGGAAAAGTATGAGTTCAGTGAACAAGATGCTCATGAACTGGCTGATTTCTTAGTTCCAATACTTGATTTTGTGCCTGAGAAAAGACCTACTGCAGCTCAATGTCTCAATCATCCATGGATTGCTGA</genome_strand>
        <mrna_strand>AACAACAGATGGAACAAGGGATGGACAGCAGAGAACTCAAAGATCTAAAAGAGGCAGTCGATCCATGAGGCAGAAACTATTGACTGATGTGGACCTTAGGTGCAAATTAGTTGACTTTGGCAATGCATGCTGGACGTATAAACAATTCACAAGTGATATCCAGACAAGACAGTATAGATGTCCTGAGGTTATCCTAGGATCTAAATATTCTACTTCAGCTGATCTTTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCACACAGTGGTGACAATTATGACAGGGATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTTGGCCCTTATGATGGAGCTTCTTGGAATGATGCCACGCAAG....................................................................................................................ATTGCCTTAGGTGGGCGTTATTCACGAGAGCTCTTCAACCGAAGTGGAGACTTGAGACATATCAGACGATTGCGGTTCTGGCCTATGAATAAAGTGCTTAGGGAAAAGTATGAGTTCAGTGAACAAGATGCTCATGAACTGGCTGATTTCTTAGTTCCAATACTTGATTTTGTGCCTGAG-AAAGACCTACTGCAGCTCAATGTCTCAATCATCCATGGATTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336116" ref_strand="+" ref_description="SGN-E336116 [cTOE-12-C3]">
      <seq>cactctcttttaccagcttgttatgtagtctagcataatctcccaccacacgtggccaagacattcagacagcgaagatattgcgtccgtaaaagcttatatatgagctgagaatatatcaaaaagagaatctctagctttgtttgaggctatgtaaaccaccctcttcatgccttacgtgtgaaatgtcattgtgcatgttgctggctttgaacacagtatatgctagtggcgagttagttgaacaagtgtgccatttgagaagacttctcatatcatttactctttcctagccaagtgttgacaataatgatatttgatataattaccccttttgatataaatttatctttacgttatatacgtggcctataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="31128" stop="30152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30828" g_stop="30446" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E336116" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30828" e_stop="30446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTACGTTATATACGTGGCCTATAACACTCGTC</genome_strand>
        <mrna_strand>CACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTGGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTTAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTACTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTACGTTATATACGTGGCCTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277203" ref_strand="+" ref_description="SGN-E277203 [cLEL-3-N10]">
      <seq>tttttttttttttaacgtaaagataagtgttttctaaaaggggtaattattctaaatatcattattgtcaacacttggctaggaaagaggaaatgatatgagaagtcttctcaaatggcacacttgttcaacttactcgccactagcatatactgtgttcaaagccagcaacatgcacaatgacatttcacacgtaaggcatgaagagggtggtttacatagcctcaaacaaagctagagattctctttttgatatattctcagctcatatataagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="30166" stop="31037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30458" g_stop="30737" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E277203" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30458" e_stop="30737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCACGTATATAACGTAAAGATAAATTTATATCAAAAGGGGTAATTATATCAAATATCATTATTGTCAACACTTGGCTAGGAAAGAGGAAATGATATGAGAAGTCTTCTCAAATGGCACACTTGTTCAACTTACTCGCCACTAGCATATACTGTGTTCAAAGCCAGCAACATGCACAATGACATTTCACACGTAAGGCATGAAGAGGGTGGTTTACATAGCCTCAAACAAAGCTAGAGATTCTCTTTTTGATATATTCTCAGCTCATATATAAGCTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTAACGTAAAGATAAGTGTTTTCTAAAAGGGGTAATTATTCTAAATATCATTATTGTCAACACTTGGCTAGGAAAGAGGAAATGATATGAGAAGTCTTCTCAAATGGCACACTTGTTCAACTTACTCGCCACTAGCATATACTGTGTTCAAAGCCAGCAACATGCACAATGACATTTCACACGTAAGGCATGAAGAGGGTGGTTTACATAGCCTCAAACAAAGCTAGAGATTCTCTTTTTGATATATTCTCAGCTCATATATAAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232426" ref_strand="+" ref_description="SGN-E232426 [cLEL-5-C5](-)">
      <seq>catgggtgccaattaggagtagccatcactctcttttaccagcttgttatgtagtctagcataatctcccaccacacgttgccaagacattcagacagcgaagatattgcgtccgtaaaagcttatatatgagctgagaatatatcaaaaagagaatctctagctttgtttgaggctatgtaaaccaccctcttcatgccttacgtgtgaaatgtcattgtgcatgttgctggctttgaacacagtatatgctagtggcgagtaagttgaacaagtgtgccatttgagaagacttctcatatcatttcctctttcctagccaagtgttgacaataatgatatttgatataattaccccttttgataaaaattaaactttacgttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="31154" stop="30166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30854" g_stop="30463" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E232426" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30854" e_stop="30463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTACGTTATATACGT</genome_strand>
        <mrna_strand>CATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATAAAAATTAAACTTTACGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232350" ref_strand="+" ref_description="SGN-E232350 [cLEL-5-C5](-)">
      <seq>gccaattaggagtagccatcactctcttttaccagcttgttatgtagtctagcataatctcccaccacacgttgccaagacattcagacagcgaagatattgcgtccgtaaaagcttatatatgagctgagaatatatcaaaaagagaatctctagctttgtttgaggctatgtaaaccaccctcttcatgccttacgtgtgaaatgtcattgtgcatgttgctggctttgaacacagtatatgctagtggcgagtaagttgaacaagtgtgccatttgagaagacttctcatatcatttcctctttcctagccaagtgttgacggtaatgagatttgatataattaccccttttgatataaatttatctttacgttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="31147" stop="30166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30847" g_stop="30463" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E232350" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30847" e_stop="30463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTACGTTATATACGT</genome_strand>
        <mrna_strand>GCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACGGTAATGAGATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTACGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235222" ref_strand="+" ref_description="SGN-E235222 [cLEL-6-K6](-)">
      <seq>tatatcgaaaagagaatctctagctttgtttgaggctatgtaagccaccctcttcatgccttacgtgtgcaatgtcattgtgcatgttgctggctttgaacgcagtatatcctagtggcgagtgagttggacaagtgtgccatttgagaagacctctcatatcatttcctcgttcctagccaagtgttgtcaataatgatatttgaaataattgccccttttgatattaatttatctttacgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="31014" stop="30166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30714" g_stop="30471" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="245" polyA_stop="261"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E235222" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30714" e_stop="30471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTACGTT</genome_strand>
        <mrna_strand>TATATCGAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAGCCACCCTCTTCATGCCTTACGTGTGCAATGTCATTGTGCATGTTGCTGGCTTTGAACGCAGTATATCCTAGTGGCGAGTGAGTTGGACAAGTGTGCCATTTGAGAAGACCTCTCATATCATTTCCTCGTTCCTAGCCAAGTGTTGTCAATAATGATATTTGAAATAATTGCCCCTTTTGATATTAATTTATCTTTACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234550" ref_strand="+" ref_description="SGN-E234550 [cLEL-6-K6](-)">
      <seq>cttatatatgagctgagcatatatcgtaaagagaatctctagctttgtttgaggctatgtaagccaccctcttcatgccttacgtgtgaaatgtcattgtgcatgtggctggctttgaacgcagtatatgctagtggcgagtgagttgaacaagtgtgccatttgagaggacctctcatatcatttcctcgttcctagccaagtgttgtcaataatgatatttgatataattgccccctttgatataactttatctttaaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="31033" stop="30166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30733" g_stop="30474" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="264" polyA_stop="280"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E234550" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30733" e_stop="30474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTAC</genome_strand>
        <mrna_strand>CTTATATATGAGCTGAGCATATATCGTAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAGCCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTGGCTGGCTTTGAACGCAGTATATGCTAGTGGCGAGTGAGTTGAACAAGTGTGCCATTTGAGAGGACCTCTCATATCATTTCCTCGTTCCTAGCCAAGTGTTGTCAATAATGATATTTGATATAATTGCCCCCTTTGATATAACTTTATCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236698" ref_strand="+" ref_description="SGN-E236698 [cLEL-7-E18](-)">
      <seq>aaaattaggtatgcaatatgtccccagtcaagatccgtagaatgagagagaaggcgacaatctaatcttcctcaagttatataccatgggtgccaattaggagtagccatcactctcttttaccagcttgttatgtagtctagcataatctcccaccacacgttgccaagacattcagacagcgaagatattgcgtccgtaaaagcttatatatgagctgagaatatatcaaaaagagaatctctagctttgtttgaggctatgtaaaccaccctcttcatgccttacgtgtgaaatgtcattgtgcatgttgctggctttgaacacagtatatgctagtggcgagtaagttgaacaagtgtgccatttgagaagacttctcatatcatttcctctttcctagccaagtgttgacaataatgatatttgatataattaccccttttgatataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="31238" stop="30185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30938" g_stop="30486" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="469"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E236698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30938" e_stop="30486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAA</genome_strand>
        <mrna_strand>AAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236790" ref_strand="+" ref_description="SGN-E236790 [cLEL-7-E6](-)">
      <seq>aatctaatcttcctcaagttatataccatgggtgccaattaggagtagccatcactctcttttaccagcttgttatgtagtctagcataatctcccaccacacgttgccaagacattcagacagcgaagatattgcgtccgtaaaagcnttatatatgagctgagaatatatcaaaaagagaatctctagctttgtttgaggctatgtaaaccaccctcttcatgccttacgtgtgaaatgtcattgtgcatgttgctggctttgaacacagtatatgctagtggcgagtaagttgaacaagtgtgccatttgagaagacttctcatatcatttcctctttcctagccaagtgttgacaataatgatatttgatataattaccccttttgatataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="31180" stop="30185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30880" g_stop="30486" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="412"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E236790" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30880" e_stop="30486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGC-TTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAA</genome_strand>
        <mrna_strand>AATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCNTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237025" ref_strand="+" ref_description="SGN-E237025 [cLEL-7-N18](-)">
      <seq>gacattcagacagcgaagatattgcgtccgtaaagncttatatatgagctgagaatatatcaaaaagagaatctctagcttttgtttgaggctatgtaaaccaccctcttcatgccttacgtgtgaaatgtcattgtgcatgttgctggctttgaacacagtatatgctagtggcgagtaagttgaacaagtgtgccatttgagaagacttctcatatcatttcctctttcctagccaagtgttgacaataatgatatttgatataattaccccttttgatataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="31069" stop="30185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30769" g_stop="30486" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="286" polyA_stop="301"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E237025" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30769" e_stop="30486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGC-TTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAA</genome_strand>
        <mrna_strand>GACATTCAGACAGCGAAGATATTGCGTCCGTAAAGNCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549695" ref_strand="+" ref_description="SGN-E549695 [TUS-6-O10](-)">
      <seq>gttatataccatgggtgccaattaggagtagccatcactctcttttaccagcttgttatgtagtctagcataatctcccaccacgcgttgccaagacattcagacagggaagatattgcgtccgtaaaagcttatatatgagctgagaatatatcaaaaagagaatctctagctttgtttgaggctatgtaaaccaccctcttcatgccttacgtgtgaaatgtcattgtgcatgttgctggctttgaacacagtatgtgctagtggcgagtaagttgaacaagtgtgccatttgagaagacttctcatatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="31163" stop="30249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30863" g_stop="30549" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E549695" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30863" e_stop="30549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATT</genome_strand>
        <mrna_strand>GTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACGCGTTGCCAAGACATTCAGACAGGGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATGTGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549680" ref_strand="+" ref_description="SGN-E549680 [TUS-6-P9](-)">
      <seq>gcccaaaaagatgccgcatatactagcatattctgcagcatgtctggatagtaggatcattgtgcatcaatatgatgcttcgcagacactgccaatataatggcgaaaacaacaaaattaggtatgcaatatgtccccagttcaagatccgtagaatgagagagaaggcgacaatctaatcttcctcaagttatataccatgggtgccaattaggagtagccatcactctcttttaccagcttgttatgtagtctagcataatctcccaccacacgttgccaagacattcagacagcgaagatattgcgtccgtaaaagcttatatatgagctgagaatatatcaaaaagagaatctctagctttgtttgaggctatgtaaaccaccctcttcatgccttacgtgtgaaatgtcattgtgcatgttgctggcttcgaacacaggagatgatagtggcgagtaagttgaacaagtgtgccatttgagaagatttctcatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="31351" stop="30251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31051" g_stop="30551" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E549680" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31051" e_stop="30551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTGCCAATATAATGGCGAAAACAACAAAATTAGGTATGCAATATGTCCCCAG-TCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCA</genome_strand>
        <mrna_strand>GCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTGCCAATATAATGGCGAAAACAACAAAATTAGGTATGCAATATGTCCCCAGTTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTCGAACACAGGAGATGATAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGATTTCTCATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203271" ref_strand="+" ref_description="SGN-E203271 [cLEB-3-M20]">
      <seq>gcacgagtctagaggaacatgtgtttgcattctggcttacaacagcaggaataattgttggggctgttctggccttttatctcatgtactggtatctcagaacgaggaaaatactgtaaacaacgcctgattccacaatcaggtgatgtaaatctttaaccaagattgagctttcaactgcagtgggtgcccaaaaagatgccgcatatactagcatattctgcagcatgtctggatagtaggatcattgtgcatcaatatgatgcttcgcagacactgccaatataatggcgaaaacaacaaaattaggtatgcaatatgtccccagtcaagatccgtagaatgagagagaaggcgacaatctaatcttcctcaagttatataccatgggtgccaattaggagtagccatcactctcttttaccagcttgttatgtagtctagcataatctcccaccacacgttgccaagacattcagacagcgaagatattgcgtccgtaaaagcttatatatgagctgagaatatatcaaaaagagaatctctagctttgtttgaggctatgtaaaccaccctcttcatgccttacgtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="32095" stop="30345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31799" g_stop="31777" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.783"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106">
            <donor d_prob="0.727" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31670" g_stop="31552" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="142" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31551" i_stop="31098" i_length="454">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31097" g_stop="30645" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="595" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E203271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31799" e_stop="31777"/>
          <exon e_start="31670" e_stop="31552"/>
          <exon e_start="31097" e_stop="30645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTATCTAGAGGAACATGTGGTATGTTTCTTAGATCTCGAGAGCTCGTTATCAATATCTCCTCATCTTTGGGAAAATATTTCCAGAATTTTGTCTTCTCATCATATACTTGTCTAATTAAATGCAGTTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAGGTATAGCGCCTCCTCTCTAATAATTAGTAATCCCACTGTCCTAATTTATGTGACGTTGTTTGACTTCGCACAAGTTTAAGAAAAAAGACCTTAATATAAAAATATAAAAATGTGAAATTATTCTAGAACCAACTAAGAATGAAAGTATGTTATATAAATTGTGACAAAGAAGTCGGTACACACTCTCCTCCTTGCAGTGCACATGAAATAATGATTCTCTTGGACTCGTAAGTACTTGTAAGTGGAAATATGGATAAAAGGTGATGAACTAAAAGGTGACCTTGACTTTAATATACACTAATAACTGAATTCACGATAAAAATTTTTATGTAGTTGACTTATATATATCTGACCAAAAGTTGTTGGATTCGGTGGACCCATATGTCGTACCCTAGATTCACCTCAGCTGGCAACTTAACCGACCTGAGCTTGGAATTGTTTGTTTTATCTGCAGGTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTGCCAATATAATGGCGAAAACAACAAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGA</genome_strand>
        <mrna_strand>GCACGAGTCTAGAGGAACATGTG..........................................................................................................TTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTGCCAATATAATGGCGAAAACAACAAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549735" ref_strand="+" ref_description="SGN-E549735 [TUS-6-O10]">
      <seq>aaaaataaaaaatttaaaagcaaataatcaaatttttggtccacaataaagcatttttttatgatcatatagaaaatcttgagccatcctttcctgatttgtctgtactaaatattagtttggtaagttactgaaacaggtttccatttgttcatccaactgcagatgtgaatcttgccatggtcaagctgaaaggctccttgattctgcaaaagaaatggaagactcaattgctgtaaacttgagttctcgaaggcttgaggtgagcagatttgagttgattctacaggttggaacattttgtgttgctgttggtgctctggtagcaggtatatttggcatgaacttaagatcctatctagaggaacatgtgtttgcattctggcttacaacagcaggaataattgttggggctgttctggccttttatctcatgtactggtatctcagaacgaggaaaatactgtaaacaacgcctgattccacaatcaggtgatgtaaatctttaaccaagattgagctttcaactgcagtgggtgccccaaaagatgccgcatatactagcatattctgcagcatgtctggatagtaggatcattgtgcatcaatatgatgcttcgcagacactgccaatataatggcgaaaacaacaaaattaggtatgcaatatgtccccagtcaagatccgtagaatgagagagaaagcgacaatctaaatcttcctcagttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="34299" stop="30558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33998" g_stop="33753" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32843" g_stop="32761" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="329" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31820" g_stop="31777" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="373" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31670" g_stop="31552" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="492" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31551" i_stop="31098" i_length="454">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31097" g_stop="30858" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="732" r_length="240" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E549735" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33998" e_stop="33753"/>
          <exon e_start="32843" e_stop="32761"/>
          <exon e_start="31820" e_stop="31777"/>
          <exon e_start="31670" e_stop="31552"/>
          <exon e_start="31097" e_stop="30858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAGGTTTGTACATGTCTTATTACTTTTCTCTTAGCTCTTTATCCTTGTGTTGGTGAACTGGGTGATGTAAAGTTGAAAAGCGATAACAGTGCATATGTAGGGAAAATTGGTCTAAGTTGCTCTCGTTTATTTGGAGAACTCTTCTATTTAATTTCATCCCCTGAACTTTCTGAAACAGTTCTCATGCTTTTAGAAACACACTGGAAAGACACGTTATAAGCTGGTTTCTTTCTGCAGATAAATTTAGTGTCAGGCAGAAGTATCGATGGCCTGCTAACAGATTCTGCTAGCGTTCTTGATCAGTGAGCCGTTTGTTTTAGTTGTGAGGATGAGACATCAACCAAAGAAAAAACTAGGGCATTAAAAACTTCTATATATGACTTCACAAACGAGAACTTGTACTGAAATTTCAATGAGTGAATGTGTACTTTGTCTTGATAAGAAGAATAACTGTGTAAGAAACTGATAATCCCACAAAAGATGAAAAAAGTATTTAAAGAACAGAGTAAGAGATAAGTAGATGAAAGCATGTAACCATAAATTCCATACTGTACATTTGATAACCTTTTTCTTTCAAGTTTTGGTGTGATAAGTTGTGCTGTACCTTGACTAAACAATATTTAGACACGCTTTTACTGTAGAAAAGCAAGATTCTTTAGCTAAAACTTCTAAGATTTCTGGATATGAATGCATACAAGAAATCAATGAAATATCTACTAAGGTTGTCGATGATGATTGACAGATCAGTTAAAAGCTTGCAACTCAAACAAGATTATCAGATTTTTCAATTGGTGAATGTGTACTTGATTTGGTCGTGTTTTGACTCCTTTGTGGTCTACTGATGCATAATTATGAAATATCATAAGTGGGCAGACTTGATTTTAATGTAAATTTTTTGCTTGTCCTTTTCAGTTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAGGTATTTGTACAACTAATATAAACAGAAAACAAGCTAAACATATCCAGTATTTTCTTCTTTGATATCTCTTCATGAGAATCAGTTGTTGCCACTTAGTTTTGTCTGCTCAGACATTTTTTGTGATGCATGTGTCCAACTTCGTAATTCAAGTCTCCCTGATCAGTCCTTGTATTGACCTGAGAAAAAAAATTATAAACATACGAGGTTGTCAGTTATTGCTATCTGAGTAATCAGGTTTCATCCCTTTCAGGTTCCATTCCTGCTTCTAAGTGTCGTTAGAATTTTCCTTGGGTTAAAAACCACTCATGGTTTGAACGAAAATGTCATTCGTAATGAGGGGTTTGTACCTTTTCTGAGGCAAAATCTTTAACCTTTAGTTTCACACCTACAAATCGGTGCATCTGTAGGTTGATGTAGGACATGATCAGACCTTCTCTCATTTCATCCTAAATGTGTGCTCGTATAATATTTTATTACTTTGTGTTATAACGTTATCATTACCTGGTCATGTATAGTTTTTAAAAAATTTCATGCATATTCTCCTATGTCGATTTGTATTAAATGCTTCCAAGTAAAGACTAATTAATGATGTAGAAATTCTAAACTCCCATAAAAATTTTGGCACCACTTGATGCATGCATCTTTCGGCGAATATGTTCATTTTTAATCTGATTTTGTATGACCACACATTCAACATCCATCTTATTTCTTAGCATTTCATCTTGACAATCTAGAACCTTATTTAGTACAAATCTTTGGAGAGCCAGAAAGTAGAGAATGTGTTGCAATTGAATTATAAAATACAAAAGATGGTTTTCTTTTTCTATTACAGTGCTGCAAATAGTTCATCTGTATAAAAGGGGATAATGTTCAAATATTCAAATTGGTACGCATGTATACTAATACATGTTATAACACACCTACTTTGGCTTCTGTACAGGTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTGGTATGTTTCTTAGATCTCGAGAGCTCGTTATCAATATCTCCTCATCTTTGGGAAAATATTTCCAGAATTTTGTCTTCTCATCATATACTTGTCTAATTAAATGCAGTTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAGGTATAGCGCCTCCTCTCTAATAATTAGTAATCCCACTGTCCTAATTTATGTGACGTTGTTTGACTTCGCACAAGTTTAAGAAAAAAGACCTTAATATAAAAATATAAAAATGTGAAATTATTCTAGAACCAACTAAGAATGAAAGTATGTTATATAAATTGTGACAAAGAAGTCGGTACACACTCTCCTCCTTGCAGTGCACATGAAATAATGATTCTCTTGGACTCGTAAGTACTTGTAAGTGGAAATATGGATAAAAGGTGATGAACTAAAAGGTGACCTTGACTTTAATATACACTAATAACTGAATTCACGATAAAAATTTTTATGTAGTTGACTTATATATATCTGACCAAAAGTTGTTGGATTCGGTGGACCCATATGTCGTACCCTAGATTCACCTCAGCTGGCAACTTAACCGACCTGAGCTTGGAATTGTTTGTTTTATCTGCAGGTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTGCCAATATAATGGCGAAAACAACAAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCT-AATCTTCCTCAAGTTATA</genome_strand>
        <mrna_strand>AAAAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG..........................................................................................................TTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCCAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTGCCAATATAATGGCGAAAACAACAAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAAGCGACAATCTAAATCTTCCTC-AGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549781" ref_strand="+" ref_description="SGN-E549781 [TUS-6-P9]">
      <seq>aaacaataaaaaatttaaaagcaaataatcaaatttttggtccacaataaagcacctttttatgatcatatagaaaatcttgagccatcctttcctgatttgtctgtactaaatattagtttggtaagttactgaaacaggtttccatttgttcatccaactgcagatgtgaatcttgccatggtcaagctgaaaggctccttgattctgcaaaagaaatggaagactcaattgctgtaaacttgagttctcgaaggcttgaggtgagcagatttgagttgattctacaggttggaacattttgtgttgctgttggtgctctggtagcaggtatatttggcatgaacttaagatcctatctagaggaacatgtgtttgcattctggcttacaacagcaggaataattgttggggctgttctggccttttatctcatgtactggtatctcagaacgaggaaaatactgtaaacaacgcctgattccacaatcaggtgatgtaaatctttaaccaagattgagctttcaactgcagtgggtgcccaaaaagatgccgcatatactagcatattctgcagcatgtctggatagtaggatcattgtgcatcaatatgatgcttcgcagacactgccccatatatggcngaaacaacaaaattaggtatgcaatatgtccccagtcaagatccgtagaatgagagagaaggcgacaatctaatcttccctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="34299" stop="30565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33999" g_stop="33753" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32843" g_stop="32761" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="330" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31820" g_stop="31777" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="374" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31670" g_stop="31552" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="493" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31551" i_stop="31098" i_length="454">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31097" g_stop="30863" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="728" r_length="235" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E549781" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33999" e_stop="33753"/>
          <exon e_start="32843" e_stop="32761"/>
          <exon e_start="31820" e_stop="31777"/>
          <exon e_start="31670" e_stop="31552"/>
          <exon e_start="31097" e_stop="30863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAGGTTTGTACATGTCTTATTACTTTTCTCTTAGCTCTTTATCCTTGTGTTGGTGAACTGGGTGATGTAAAGTTGAAAAGCGATAACAGTGCATATGTAGGGAAAATTGGTCTAAGTTGCTCTCGTTTATTTGGAGAACTCTTCTATTTAATTTCATCCCCTGAACTTTCTGAAACAGTTCTCATGCTTTTAGAAACACACTGGAAAGACACGTTATAAGCTGGTTTCTTTCTGCAGATAAATTTAGTGTCAGGCAGAAGTATCGATGGCCTGCTAACAGATTCTGCTAGCGTTCTTGATCAGTGAGCCGTTTGTTTTAGTTGTGAGGATGAGACATCAACCAAAGAAAAAACTAGGGCATTAAAAACTTCTATATATGACTTCACAAACGAGAACTTGTACTGAAATTTCAATGAGTGAATGTGTACTTTGTCTTGATAAGAAGAATAACTGTGTAAGAAACTGATAATCCCACAAAAGATGAAAAAAGTATTTAAAGAACAGAGTAAGAGATAAGTAGATGAAAGCATGTAACCATAAATTCCATACTGTACATTTGATAACCTTTTTCTTTCAAGTTTTGGTGTGATAAGTTGTGCTGTACCTTGACTAAACAATATTTAGACACGCTTTTACTGTAGAAAAGCAAGATTCTTTAGCTAAAACTTCTAAGATTTCTGGATATGAATGCATACAAGAAATCAATGAAATATCTACTAAGGTTGTCGATGATGATTGACAGATCAGTTAAAAGCTTGCAACTCAAACAAGATTATCAGATTTTTCAATTGGTGAATGTGTACTTGATTTGGTCGTGTTTTGACTCCTTTGTGGTCTACTGATGCATAATTATGAAATATCATAAGTGGGCAGACTTGATTTTAATGTAAATTTTTTGCTTGTCCTTTTCAGTTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAGGTATTTGTACAACTAATATAAACAGAAAACAAGCTAAACATATCCAGTATTTTCTTCTTTGATATCTCTTCATGAGAATCAGTTGTTGCCACTTAGTTTTGTCTGCTCAGACATTTTTTGTGATGCATGTGTCCAACTTCGTAATTCAAGTCTCCCTGATCAGTCCTTGTATTGACCTGAGAAAAAAAATTATAAACATACGAGGTTGTCAGTTATTGCTATCTGAGTAATCAGGTTTCATCCCTTTCAGGTTCCATTCCTGCTTCTAAGTGTCGTTAGAATTTTCCTTGGGTTAAAAACCACTCATGGTTTGAACGAAAATGTCATTCGTAATGAGGGGTTTGTACCTTTTCTGAGGCAAAATCTTTAACCTTTAGTTTCACACCTACAAATCGGTGCATCTGTAGGTTGATGTAGGACATGATCAGACCTTCTCTCATTTCATCCTAAATGTGTGCTCGTATAATATTTTATTACTTTGTGTTATAACGTTATCATTACCTGGTCATGTATAGTTTTTAAAAAATTTCATGCATATTCTCCTATGTCGATTTGTATTAAATGCTTCCAAGTAAAGACTAATTAATGATGTAGAAATTCTAAACTCCCATAAAAATTTTGGCACCACTTGATGCATGCATCTTTCGGCGAATATGTTCATTTTTAATCTGATTTTGTATGACCACACATTCAACATCCATCTTATTTCTTAGCATTTCATCTTGACAATCTAGAACCTTATTTAGTACAAATCTTTGGAGAGCCAGAAAGTAGAGAATGTGTTGCAATTGAATTATAAAATACAAAAGATGGTTTTCTTTTTCTATTACAGTGCTGCAAATAGTTCATCTGTATAAAAGGGGATAATGTTCAAATATTCAAATTGGTACGCATGTATACTAATACATGTTATAACACACCTACTTTGGCTTCTGTACAGGTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTGGTATGTTTCTTAGATCTCGAGAGCTCGTTATCAATATCTCCTCATCTTTGGGAAAATATTTCCAGAATTTTGTCTTCTCATCATATACTTGTCTAATTAAATGCAGTTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAGGTATAGCGCCTCCTCTCTAATAATTAGTAATCCCACTGTCCTAATTTATGTGACGTTGTTTGACTTCGCACAAGTTTAAGAAAAAAGACCTTAATATAAAAATATAAAAATGTGAAATTATTCTAGAACCAACTAAGAATGAAAGTATGTTATATAAATTGTGACAAAGAAGTCGGTACACACTCTCCTCCTTGCAGTGCACATGAAATAATGATTCTCTTGGACTCGTAAGTACTTGTAAGTGGAAATATGGATAAAAGGTGATGAACTAAAAGGTGACCTTGACTTTAATATACACTAATAACTGAATTCACGATAAAAATTTTTATGTAGTTGACTTATATATATCTGACCAAAAGTTGTTGGATTCGGTGGACCCATATGTCGTACCCTAGATTCACCTCAGCTGGCAACTTAACCGACCTGAGCTTGGAATTGTTTGTTTTATCTGCAGGTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTG-CCAATATAATGGCGAAAACAACAAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCTCAAG</genome_strand>
        <mrna_strand>AAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCACCTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG..........................................................................................................TTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTGCCCCATAT-ATGGCNGAAACAACAAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259463" ref_strand="+" ref_description="SGN-E259463 [cLEG-42-I3]">
      <seq>ttgtgtacttaagaaagaaaacgatgagatagagtgctcggtgcccctagataaggacattgcagaagaagaagaggaagaaattgaaatgcttttggagaattatcttcagagatgtgaatcttgccatggtcaagctgaaaggctccttgattctgcaaaagaaatggaagactcaattgctgtaaacttgagttctcgaaggcttgaggtgagcagatttgagttgattctacaggttggaacattttgtgttgctgttggtgctctggtagcaggtatatttggcatgaacttaagatcctatctagaggaacatgtgtttgcattctggcttacaacagcaggaataattgttggggctgttctggccttttatctcatgtactggtatctcagaacgaggaaaatactgtaaacaacgcctgattccacaatcaggtgatgtaaatctttaaccaagattgagctttcaactgcagtgggtgcccaaaaagatgccgcatatactagcatattctgcagcatgtctggatagtaggatcattgtgcatcaatatgatgcttcgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="36552" stop="30667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36252" g_stop="36185" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36184" i_stop="36093" i_length="92">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36092" g_stop="36047" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="114" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36046" i_stop="33834" i_length="2213">
            <donor d_prob="0.162" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33833" g_stop="33753" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="195" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32843" g_stop="32761" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="278" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31820" g_stop="31777" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="322" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31670" g_stop="31552" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="441" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31551" i_stop="31098" i_length="454">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31097" g_stop="30967" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="572" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E259463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36252" e_stop="36185"/>
          <exon e_start="36092" e_stop="36047"/>
          <exon e_start="33833" e_stop="33753"/>
          <exon e_start="32843" e_stop="32761"/>
          <exon e_start="31820" e_stop="31777"/>
          <exon e_start="31670" e_stop="31552"/>
          <exon e_start="31097" e_stop="30967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAGGTGTGCTTATAATATTCCCATACTGATTCTTGCATACTATACCAGATCAATGATGCTTCTTACACTTGCTTATATGTCTTTCTATTTTGCAGAAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAGGTTGTGTATTGGTGCTATTTCAAATCCCTTAGTGTAGATAGTATACCTCATTACTTGTTGCATACTTAGTTTCTGTGTTTACTCTGCAATCACATAATCAAGCAACATGCACTGGTTGGGCTGTCAGATTCAAATGAAGCTCTGCAGAACAAGGAGCCAATAACAAAATTTAAAGGACACCGTAATTTTATTGAGCAATAGTACACATTAAATCTTGAAAAGTGAACTGCAGTTTTCTATCTCTGAACATGTCTTGATAACTTTTTTGGTGTATGGAAGGGCCTATTTCACATTCGAGGTAAGGTTTTCTCATTTGCTATATACTACCTGGCTCTTATAATGAAATATTGGCACAAACTTTTGAATGATTCTTCCTCCATCCCAATTCATATGACATTCTTTCTGTTTTGAAACATCCCAAACTGTTTGTCACATTTCTTTAATATGCATTTTTACAACTTTCTTGAATTCACATTCATTAACTTCAAATTTTGAACCTAACACATTAAAAAAGGCTCTTACCAAACACCCCAAAAAATGTTAAAGTATACCAACATGACTATGTCTTAACCTCATCTAGTTGATATGATTTGAATGGCTCTTTGTTTCTGATGTGTCCTATTCTTTGCTATAGTTTCCATCAGTCGTGAGGGCGTAGGTCTTTTAGGTCAACGTTTCTCCCTGTGATTTTAGGTCTACATTTCACATTTTTACACTCTACAAATTGATCTATTTGAAGGTCTATGTAGGACATGGCCAAATCATCCTTGGCAACCTCCCAATTTATCCTCTGGGTTTACTACTTGTACTTTTCATCTAATGTAAAGGGCAACCCGGTGCACTTACGCCCCCACTACGTGCAGACCTTAAAGGTTATTGTACGCAGTCTTACACTACATTTCTACTAGAGACTGTTTCCACAGCTCAAACATATGGCAACAACTGTACCAGTTACACCAGGAATCCCCTTCACTTCTCCTCGAATGTGATCACTTATATTTTTCTCCATCCTGACATTCTCTTCTACATAACCTCATCTTGTTGATATGTTGGGCTTTACTGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAGGTTTGTACATGTCTTATTACTTTTCTCTTAGCTCTTTATCCTTGTGTTGGTGAACTGGGTGATGTAAAGTTGAAAAGCGATAACAGTGCATATGTAGGGAAAATTGGTCTAAGTTGCTCTCGTTTATTTGGAGAACTCTTCTATTTAATTTCATCCCCTGAACTTTCTGAAACAGTTCTCATGCTTTTAGAAACACACTGGAAAGACACGTTATAAGCTGGTTTCTTTCTGCAGATAAATTTAGTGTCAGGCAGAAGTATCGATGGCCTGCTAACAGATTCTGCTAGCGTTCTTGATCAGTGAGCCGTTTGTTTTAGTTGTGAGGATGAGACATCAACCAAAGAAAAAACTAGGGCATTAAAAACTTCTATATATGACTTCACAAACGAGAACTTGTACTGAAATTTCAATGAGTGAATGTGTACTTTGTCTTGATAAGAAGAATAACTGTGTAAGAAACTGATAATCCCACAAAAGATGAAAAAAGTATTTAAAGAACAGAGTAAGAGATAAGTAGATGAAAGCATGTAACCATAAATTCCATACTGTACATTTGATAACCTTTTTCTTTCAAGTTTTGGTGTGATAAGTTGTGCTGTACCTTGACTAAACAATATTTAGACACGCTTTTACTGTAGAAAAGCAAGATTCTTTAGCTAAAACTTCTAAGATTTCTGGATATGAATGCATACAAGAAATCAATGAAATATCTACTAAGGTTGTCGATGATGATTGACAGATCAGTTAAAAGCTTGCAACTCAAACAAGATTATCAGATTTTTCAATTGGTGAATGTGTACTTGATTTGGTCGTGTTTTGACTCCTTTGTGGTCTACTGATGCATAATTATGAAATATCATAAGTGGGCAGACTTGATTTTAATGTAAATTTTTTGCTTGTCCTTTTCAGTTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAGGTATTTGTACAACTAATATAAACAGAAAACAAGCTAAACATATCCAGTATTTTCTTCTTTGATATCTCTTCATGAGAATCAGTTGTTGCCACTTAGTTTTGTCTGCTCAGACATTTTTTGTGATGCATGTGTCCAACTTCGTAATTCAAGTCTCCCTGATCAGTCCTTGTATTGACCTGAGAAAAAAAATTATAAACATACGAGGTTGTCAGTTATTGCTATCTGAGTAATCAGGTTTCATCCCTTTCAGGTTCCATTCCTGCTTCTAAGTGTCGTTAGAATTTTCCTTGGGTTAAAAACCACTCATGGTTTGAACGAAAATGTCATTCGTAATGAGGGGTTTGTACCTTTTCTGAGGCAAAATCTTTAACCTTTAGTTTCACACCTACAAATCGGTGCATCTGTAGGTTGATGTAGGACATGATCAGACCTTCTCTCATTTCATCCTAAATGTGTGCTCGTATAATATTTTATTACTTTGTGTTATAACGTTATCATTACCTGGTCATGTATAGTTTTTAAAAAATTTCATGCATATTCTCCTATGTCGATTTGTATTAAATGCTTCCAAGTAAAGACTAATTAATGATGTAGAAATTCTAAACTCCCATAAAAATTTTGGCACCACTTGATGCATGCATCTTTCGGCGAATATGTTCATTTTTAATCTGATTTTGTATGACCACACATTCAACATCCATCTTATTTCTTAGCATTTCATCTTGACAATCTAGAACCTTATTTAGTACAAATCTTTGGAGAGCCAGAAAGTAGAGAATGTGTTGCAATTGAATTATAAAATACAAAAGATGGTTTTCTTTTTCTATTACAGTGCTGCAAATAGTTCATCTGTATAAAAGGGGATAATGTTCAAATATTCAAATTGGTACGCATGTATACTAATACATGTTATAACACACCTACTTTGGCTTCTGTACAGGTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTGGTATGTTTCTTAGATCTCGAGAGCTCGTTATCAATATCTCCTCATCTTTGGGAAAATATTTCCAGAATTTTGTCTTCTCATCATATACTTGTCTAATTAAATGCAGTTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAGGTATAGCGCCTCCTCTCTAATAATTAGTAATCCCACTGTCCTAATTTATGTGACGTTGTTTGACTTCGCACAAGTTTAAGAAAAAAGACCTTAATATAAAAATATAAAAATGTGAAATTATTCTAGAACCAACTAAGAATGAAAGTATGTTATATAAATTGTGACAAAGAAGTCGGTACACACTCTCCTCCTTGCAGTGCACATGAAATAATGATTCTCTTGGACTCGTAAGTACTTGTAAGTGGAAATATGGATAAAAGGTGATGAACTAAAAGGTGACCTTGACTTTAATATACACTAATAACTGAATTCACGATAAAAATTTTTATGTAGTTGACTTATATATATCTGACCAAAAGTTGTTGGATTCGGTGGACCCATATGTCGTACCCTAGATTCACCTCAGCTGGCAACTTAACCGACCTGAGCTTGGAATTGTTTGTTTTATCTGCAGGTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAG</genome_strand>
        <mrna_strand>TTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAG............................................................................................AAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG..........................................................................................................TTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621815" ref_strand="+" ref_description="SGN-E621815 [72175]">
      <seq>ttggaattgggttccagggcaggggctcttaagcaaatgctacttgatattctagaggatactcatgaaatacgtcacatctgtataatcgggagaaattgtgtacttaagaaagaaaacgatgagatagagtgctccgtgcccctagataaggagattgctgaagaagaagaagaagaaattgaaatgcttttggaaaattatcttcagagatgtgaatcttgccatggtcaagctgaaaggctccttgattctgcaaaagaaatggaagactcaattgctgtaaacttgagttctcgaaggcttgaggtgagcagattcgagttgattctacaggttggaacattttgtgttgctgttggtgctctggtagcaggtatatttggcatgaacttaagatcctatctagaggaacatgtgtttgcattctggcttacaacagcaggaataattgttggggctgttctggccttttatctcatgtactggtatctcagaacgaggaaaatactgtaagcaactgctgattccgcaatcaggtgttgtaaatctgaccaagattcagctttaactgcagtaggtgcccaaaacaatgctggatactagcattttctgcagcatgtatgggtacgtaggatcattgtacatcaatatgatgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="36649" stop="30671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36350" g_stop="36185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36184" i_stop="36093" i_length="92">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36092" g_stop="36047" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="212" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36046" i_stop="33834" i_length="2213">
            <donor d_prob="0.162" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33833" g_stop="33753" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="293" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32843" g_stop="32761" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="376" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31820" g_stop="31777" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="420" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31670" g_stop="31552" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="539" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31551" i_stop="31098" i_length="454">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31097" g_stop="30971" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="662" r_length="123" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E621815" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36350" e_stop="36185"/>
          <exon e_start="36092" e_stop="36047"/>
          <exon e_start="33833" e_stop="33753"/>
          <exon e_start="32843" e_stop="32761"/>
          <exon e_start="31820" e_stop="31777"/>
          <exon e_start="31670" e_stop="31552"/>
          <exon e_start="31097" e_stop="30971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCAAATCTGTATAATTGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAGGTGTGCTTATAATATTCCCATACTGATTCTTGCATACTATACCAGATCAATGATGCTTCTTACACTTGCTTATATGTCTTTCTATTTTGCAGAAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAGGTTGTGTATTGGTGCTATTTCAAATCCCTTAGTGTAGATAGTATACCTCATTACTTGTTGCATACTTAGTTTCTGTGTTTACTCTGCAATCACATAATCAAGCAACATGCACTGGTTGGGCTGTCAGATTCAAATGAAGCTCTGCAGAACAAGGAGCCAATAACAAAATTTAAAGGACACCGTAATTTTATTGAGCAATAGTACACATTAAATCTTGAAAAGTGAACTGCAGTTTTCTATCTCTGAACATGTCTTGATAACTTTTTTGGTGTATGGAAGGGCCTATTTCACATTCGAGGTAAGGTTTTCTCATTTGCTATATACTACCTGGCTCTTATAATGAAATATTGGCACAAACTTTTGAATGATTCTTCCTCCATCCCAATTCATATGACATTCTTTCTGTTTTGAAACATCCCAAACTGTTTGTCACATTTCTTTAATATGCATTTTTACAACTTTCTTGAATTCACATTCATTAACTTCAAATTTTGAACCTAACACATTAAAAAAGGCTCTTACCAAACACCCCAAAAAATGTTAAAGTATACCAACATGACTATGTCTTAACCTCATCTAGTTGATATGATTTGAATGGCTCTTTGTTTCTGATGTGTCCTATTCTTTGCTATAGTTTCCATCAGTCGTGAGGGCGTAGGTCTTTTAGGTCAACGTTTCTCCCTGTGATTTTAGGTCTACATTTCACATTTTTACACTCTACAAATTGATCTATTTGAAGGTCTATGTAGGACATGGCCAAATCATCCTTGGCAACCTCCCAATTTATCCTCTGGGTTTACTACTTGTACTTTTCATCTAATGTAAAGGGCAACCCGGTGCACTTACGCCCCCACTACGTGCAGACCTTAAAGGTTATTGTACGCAGTCTTACACTACATTTCTACTAGAGACTGTTTCCACAGCTCAAACATATGGCAACAACTGTACCAGTTACACCAGGAATCCCCTTCACTTCTCCTCGAATGTGATCACTTATATTTTTCTCCATCCTGACATTCTCTTCTACATAACCTCATCTTGTTGATATGTTGGGCTTTACTGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAGGTTTGTACATGTCTTATTACTTTTCTCTTAGCTCTTTATCCTTGTGTTGGTGAACTGGGTGATGTAAAGTTGAAAAGCGATAACAGTGCATATGTAGGGAAAATTGGTCTAAGTTGCTCTCGTTTATTTGGAGAACTCTTCTATTTAATTTCATCCCCTGAACTTTCTGAAACAGTTCTCATGCTTTTAGAAACACACTGGAAAGACACGTTATAAGCTGGTTTCTTTCTGCAGATAAATTTAGTGTCAGGCAGAAGTATCGATGGCCTGCTAACAGATTCTGCTAGCGTTCTTGATCAGTGAGCCGTTTGTTTTAGTTGTGAGGATGAGACATCAACCAAAGAAAAAACTAGGGCATTAAAAACTTCTATATATGACTTCACAAACGAGAACTTGTACTGAAATTTCAATGAGTGAATGTGTACTTTGTCTTGATAAGAAGAATAACTGTGTAAGAAACTGATAATCCCACAAAAGATGAAAAAAGTATTTAAAGAACAGAGTAAGAGATAAGTAGATGAAAGCATGTAACCATAAATTCCATACTGTACATTTGATAACCTTTTTCTTTCAAGTTTTGGTGTGATAAGTTGTGCTGTACCTTGACTAAACAATATTTAGACACGCTTTTACTGTAGAAAAGCAAGATTCTTTAGCTAAAACTTCTAAGATTTCTGGATATGAATGCATACAAGAAATCAATGAAATATCTACTAAGGTTGTCGATGATGATTGACAGATCAGTTAAAAGCTTGCAACTCAAACAAGATTATCAGATTTTTCAATTGGTGAATGTGTACTTGATTTGGTCGTGTTTTGACTCCTTTGTGGTCTACTGATGCATAATTATGAAATATCATAAGTGGGCAGACTTGATTTTAATGTAAATTTTTTGCTTGTCCTTTTCAGTTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAGGTATTTGTACAACTAATATAAACAGAAAACAAGCTAAACATATCCAGTATTTTCTTCTTTGATATCTCTTCATGAGAATCAGTTGTTGCCACTTAGTTTTGTCTGCTCAGACATTTTTTGTGATGCATGTGTCCAACTTCGTAATTCAAGTCTCCCTGATCAGTCCTTGTATTGACCTGAGAAAAAAAATTATAAACATACGAGGTTGTCAGTTATTGCTATCTGAGTAATCAGGTTTCATCCCTTTCAGGTTCCATTCCTGCTTCTAAGTGTCGTTAGAATTTTCCTTGGGTTAAAAACCACTCATGGTTTGAACGAAAATGTCATTCGTAATGAGGGGTTTGTACCTTTTCTGAGGCAAAATCTTTAACCTTTAGTTTCACACCTACAAATCGGTGCATCTGTAGGTTGATGTAGGACATGATCAGACCTTCTCTCATTTCATCCTAAATGTGTGCTCGTATAATATTTTATTACTTTGTGTTATAACGTTATCATTACCTGGTCATGTATAGTTTTTAAAAAATTTCATGCATATTCTCCTATGTCGATTTGTATTAAATGCTTCCAAGTAAAGACTAATTAATGATGTAGAAATTCTAAACTCCCATAAAAATTTTGGCACCACTTGATGCATGCATCTTTCGGCGAATATGTTCATTTTTAATCTGATTTTGTATGACCACACATTCAACATCCATCTTATTTCTTAGCATTTCATCTTGACAATCTAGAACCTTATTTAGTACAAATCTTTGGAGAGCCAGAAAGTAGAGAATGTGTTGCAATTGAATTATAAAATACAAAAGATGGTTTTCTTTTTCTATTACAGTGCTGCAAATAGTTCATCTGTATAAAAGGGGATAATGTTCAAATATTCAAATTGGTACGCATGTATACTAATACATGTTATAACACACCTACTTTGGCTTCTGTACAGGTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTGGTATGTTTCTTAGATCTCGAGAGCTCGTTATCAATATCTCCTCATCTTTGGGAAAATATTTCCAGAATTTTGTCTTCTCATCATATACTTGTCTAATTAAATGCAGTTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAGGTATAGCGCCTCCTCTCTAATAATTAGTAATCCCACTGTCCTAATTTATGTGACGTTGTTTGACTTCGCACAAGTTTAAGAAAAAAGACCTTAATATAAAAATATAAAAATGTGAAATTATTCTAGAACCAACTAAGAATGAAAGTATGTTATATAAATTGTGACAAAGAAGTCGGTACACACTCTCCTCCTTGCAGTGCACATGAAATAATGATTCTCTTGGACTCGTAAGTACTTGTAAGTGGAAATATGGATAAAAGGTGATGAACTAAAAGGTGACCTTGACTTTAATATACACTAATAACTGAATTCACGATAAAAATTTTTATGTAGTTGACTTATATATATCTGACCAAAAGTTGTTGGATTCGGTGGACCCATATGTCGTACCCTAGATTCACCTCAGCTGGCAACTTAACCGACCTGAGCTTGGAATTGTTTGTTTTATCTGCAGGTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATA-GTAGGATCATTGTGCATCAATATGATGCTTC</genome_strand>
        <mrna_strand>TTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCACATCTGTATAATCGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCCGTGCCCCTAGATAAGGAGATTGCTGAAG............................................................................................AAGAAGAAGAAGAAATTGAAATGCTTTTGGAAAATTATCTTCAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGAAGGCTTGAGGTGAGCAGATTCGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG..........................................................................................................TTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAGCAACTGCTGATTCCGCAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTAAATC--TGACCAAGATTCAGCTTT-AACTGCAGTAGGTGCCCAAAACAATGCTG--GATACTAGCATTTTCTGCAGCATGTATGGGTACGTAGGATCATTGTACATCAATATGATGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452265" ref_strand="+" ref_description="SGN-E452265 [cSTS-16-O19]">
      <seq>acggatacaaagattggaacataggctgtgggatttagaaccacgtgtccaagcactacttgcggttttgcctaaccgattaactgcagacatattggaggaacttcgtatcagtaaacagaaactggtggaattgggttccagggcaggggctcttaagcaaatgctacttgatattctagaggatactcatgaaatacgtcacatctgtataatcgggagaaattgtgtacttaagaaagaaaacgatgagatagagtgctccgtgcccctagataaggagattgctgaagaagaagaagaagaaattgaaatgcttttggaaaattatcttcagagatgtgaatcttgccatggtcaagctgaaaggctccttgattctgcaaaagaaatggaagactcaattgctgtaaatttgagttctcgaaggcttgaggtgagcagattcgagttgattctacaggttggaacattttgtgttgctgttggtgctctggttgcaggtatatttggcatgaacttaagatcctatctagaggaacatgtgtttgcattctggcttacaacagcaggaataattgttggggctgttctagccttttatctcatgtactggtatctcagaacgaggaaaatactgtaagcaactgctgattccgcaatcagatgatttaaatcttgaccaagattcagctttcaactgcagtaggtgcccaaaacaatgctggatactagcatatgtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="37267" stop="30727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36967" g_stop="36922" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36921" i_stop="36513" i_length="409">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36512" g_stop="36432" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="127" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36431" i_stop="36351" i_length="81">
            <donor d_prob="0.934" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36350" g_stop="36185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="293" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36184" i_stop="36093" i_length="92">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36092" g_stop="36047" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="339" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36046" i_stop="33834" i_length="2213">
            <donor d_prob="0.162" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33833" g_stop="33753" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="420" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32843" g_stop="32761" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="503" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31820" g_stop="31777" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="547" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31670" g_stop="31552" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="666" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31551" i_stop="31098" i_length="454">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="31097" g_stop="31016" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="746" r_length="80" r_score="0.817"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E452265" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36967" e_stop="36922"/>
          <exon e_start="36512" e_stop="36432"/>
          <exon e_start="36350" e_stop="36185"/>
          <exon e_start="36092" e_stop="36047"/>
          <exon e_start="33833" e_stop="33753"/>
          <exon e_start="32843" e_stop="32761"/>
          <exon e_start="31820" e_stop="31777"/>
          <exon e_start="31670" e_stop="31552"/>
          <exon e_start="31097" e_stop="31016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATACAAAGATTGGAACATAGGCTGTGGGATTTAGAACCACGTGTGAGTATGGAACATAGTGAGTACATAAGTAATGTTTGTTTTTCTTCTTCTTTATATGAATTGTTCCCTTTCCCGCCCATTCCTTCTTCCACCAATTGACTATATGTTGGAAGCAAGTGACTTCTCCCAGTAAACAATGTTAACTTGGTGAAAGGGGATGAAAATGCAAGGAATTTTATCACTTCCCTTCAAATTTTCTGTCCATTACTTCTGTTCTAATATAGTATTTAAAAAAAACATTTTAGAGGATTGTCCCGAGCTTGTAATATGTTAAACAGATCTTATTCTCTCTTAATGTAACATGCTGGCCTACTTTCTAGAGTGGTCCCTTAGAATTAAGTATCTCTCTTTCCGCCTTACATGGTATGGTTACTTTCAATTTAGAAATACTCCGCCTCGCTTGGTGCAGGTCCAAGCACTACTTGAGGTTTTGCCCAACCGATTAACTGCAGACATATTGGAGGAACTTCGCATCAGTAAACAGAAACTAGTACGATTACCATTCAGCTGTACCTTATAAAATTAGTCTTGGTACATTCTATTATGACTTCCCTTCTCTTGCTTGTGACAGGTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCAAATCTGTATAATTGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAGGTGTGCTTATAATATTCCCATACTGATTCTTGCATACTATACCAGATCAATGATGCTTCTTACACTTGCTTATATGTCTTTCTATTTTGCAGAAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAGGTTGTGTATTGGTGCTATTTCAAATCCCTTAGTGTAGATAGTATACCTCATTACTTGTTGCATACTTAGTTTCTGTGTTTACTCTGCAATCACATAATCAAGCAACATGCACTGGTTGGGCTGTCAGATTCAAATGAAGCTCTGCAGAACAAGGAGCCAATAACAAAATTTAAAGGACACCGTAATTTTATTGAGCAATAGTACACATTAAATCTTGAAAAGTGAACTGCAGTTTTCTATCTCTGAACATGTCTTGATAACTTTTTTGGTGTATGGAAGGGCCTATTTCACATTCGAGGTAAGGTTTTCTCATTTGCTATATACTACCTGGCTCTTATAATGAAATATTGGCACAAACTTTTGAATGATTCTTCCTCCATCCCAATTCATATGACATTCTTTCTGTTTTGAAACATCCCAAACTGTTTGTCACATTTCTTTAATATGCATTTTTACAACTTTCTTGAATTCACATTCATTAACTTCAAATTTTGAACCTAACACATTAAAAAAGGCTCTTACCAAACACCCCAAAAAATGTTAAAGTATACCAACATGACTATGTCTTAACCTCATCTAGTTGATATGATTTGAATGGCTCTTTGTTTCTGATGTGTCCTATTCTTTGCTATAGTTTCCATCAGTCGTGAGGGCGTAGGTCTTTTAGGTCAACGTTTCTCCCTGTGATTTTAGGTCTACATTTCACATTTTTACACTCTACAAATTGATCTATTTGAAGGTCTATGTAGGACATGGCCAAATCATCCTTGGCAACCTCCCAATTTATCCTCTGGGTTTACTACTTGTACTTTTCATCTAATGTAAAGGGCAACCCGGTGCACTTACGCCCCCACTACGTGCAGACCTTAAAGGTTATTGTACGCAGTCTTACACTACATTTCTACTAGAGACTGTTTCCACAGCTCAAACATATGGCAACAACTGTACCAGTTACACCAGGAATCCCCTTCACTTCTCCTCGAATGTGATCACTTATATTTTTCTCCATCCTGACATTCTCTTCTACATAACCTCATCTTGTTGATATGTTGGGCTTTACTGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAGGTTTGTACATGTCTTATTACTTTTCTCTTAGCTCTTTATCCTTGTGTTGGTGAACTGGGTGATGTAAAGTTGAAAAGCGATAACAGTGCATATGTAGGGAAAATTGGTCTAAGTTGCTCTCGTTTATTTGGAGAACTCTTCTATTTAATTTCATCCCCTGAACTTTCTGAAACAGTTCTCATGCTTTTAGAAACACACTGGAAAGACACGTTATAAGCTGGTTTCTTTCTGCAGATAAATTTAGTGTCAGGCAGAAGTATCGATGGCCTGCTAACAGATTCTGCTAGCGTTCTTGATCAGTGAGCCGTTTGTTTTAGTTGTGAGGATGAGACATCAACCAAAGAAAAAACTAGGGCATTAAAAACTTCTATATATGACTTCACAAACGAGAACTTGTACTGAAATTTCAATGAGTGAATGTGTACTTTGTCTTGATAAGAAGAATAACTGTGTAAGAAACTGATAATCCCACAAAAGATGAAAAAAGTATTTAAAGAACAGAGTAAGAGATAAGTAGATGAAAGCATGTAACCATAAATTCCATACTGTACATTTGATAACCTTTTTCTTTCAAGTTTTGGTGTGATAAGTTGTGCTGTACCTTGACTAAACAATATTTAGACACGCTTTTACTGTAGAAAAGCAAGATTCTTTAGCTAAAACTTCTAAGATTTCTGGATATGAATGCATACAAGAAATCAATGAAATATCTACTAAGGTTGTCGATGATGATTGACAGATCAGTTAAAAGCTTGCAACTCAAACAAGATTATCAGATTTTTCAATTGGTGAATGTGTACTTGATTTGGTCGTGTTTTGACTCCTTTGTGGTCTACTGATGCATAATTATGAAATATCATAAGTGGGCAGACTTGATTTTAATGTAAATTTTTTGCTTGTCCTTTTCAGTTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAGGTATTTGTACAACTAATATAAACAGAAAACAAGCTAAACATATCCAGTATTTTCTTCTTTGATATCTCTTCATGAGAATCAGTTGTTGCCACTTAGTTTTGTCTGCTCAGACATTTTTTGTGATGCATGTGTCCAACTTCGTAATTCAAGTCTCCCTGATCAGTCCTTGTATTGACCTGAGAAAAAAAATTATAAACATACGAGGTTGTCAGTTATTGCTATCTGAGTAATCAGGTTTCATCCCTTTCAGGTTCCATTCCTGCTTCTAAGTGTCGTTAGAATTTTCCTTGGGTTAAAAACCACTCATGGTTTGAACGAAAATGTCATTCGTAATGAGGGGTTTGTACCTTTTCTGAGGCAAAATCTTTAACCTTTAGTTTCACACCTACAAATCGGTGCATCTGTAGGTTGATGTAGGACATGATCAGACCTTCTCTCATTTCATCCTAAATGTGTGCTCGTATAATATTTTATTACTTTGTGTTATAACGTTATCATTACCTGGTCATGTATAGTTTTTAAAAAATTTCATGCATATTCTCCTATGTCGATTTGTATTAAATGCTTCCAAGTAAAGACTAATTAATGATGTAGAAATTCTAAACTCCCATAAAAATTTTGGCACCACTTGATGCATGCATCTTTCGGCGAATATGTTCATTTTTAATCTGATTTTGTATGACCACACATTCAACATCCATCTTATTTCTTAGCATTTCATCTTGACAATCTAGAACCTTATTTAGTACAAATCTTTGGAGAGCCAGAAAGTAGAGAATGTGTTGCAATTGAATTATAAAATACAAAAGATGGTTTTCTTTTTCTATTACAGTGCTGCAAATAGTTCATCTGTATAAAAGGGGATAATGTTCAAATATTCAAATTGGTACGCATGTATACTAATACATGTTATAACACACCTACTTTGGCTTCTGTACAGGTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTGGTATGTTTCTTAGATCTCGAGAGCTCGTTATCAATATCTCCTCATCTTTGGGAAAATATTTCCAGAATTTTGTCTTCTCATCATATACTTGTCTAATTAAATGCAGTTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAGGTATAGCGCCTCCTCTCTAATAATTAGTAATCCCACTGTCCTAATTTATGTGACGTTGTTTGACTTCGCACAAGTTTAAGAAAAAAGACCTTAATATAAAAATATAAAAATGTGAAATTATTCTAGAACCAACTAAGAATGAAAGTATGTTATATAAATTGTGACAAAGAAGTCGGTACACACTCTCCTCCTTGCAGTGCACATGAAATAATGATTCTCTTGGACTCGTAAGTACTTGTAAGTGGAAATATGGATAAAAGGTGATGAACTAAAAGGTGACCTTGACTTTAATATACACTAATAACTGAATTCACGATAAAAATTTTTATGTAGTTGACTTATATATATCTGACCAAAAGTTGTTGGATTCGGTGGACCCATATGTCGTACCCTAGATTCACCTCAGCTGGCAACTTAACCGACCTGAGCTTGGAATTGTTTGTTTTATCTGCAGGTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATAT-TCTGC</genome_strand>
        <mrna_strand>ACGGATACAAAGATTGGAACATAGGCTGTGGGATTTAGAACCACGT.........................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAGCACTACTTGCGGTTTTGCCTAACCGATTAACTGCAGACATATTGGAGGAACTTCGTATCAGTAAACAGAAACTG.................................................................................GTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCACATCTGTATAATCGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCCGTGCCCCTAGATAAGGAGATTGCTGAAG............................................................................................AAGAAGAAGAAGAAATTGAAATGCTTTTGGAAAATTATCTTCAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAATTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGAAGGCTTGAGGTGAGCAGATTCGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTTGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG..........................................................................................................TTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTAGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAGCAACTGCTGATTCCGCAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTAAATC-TTGACCAAGATTCAGCTTTCAACTGCAGTAGGTGCCCAAAACAATGCTG--GATACTAGCATATGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424368" ref_strand="+" ref_description="SGN-E424368 [STM-43-O24]">
      <seq>acggatacaaagattggaacataggctgtgggatttagaaccacgtgtccaagcactacttgcggttttgcctaaccgattaactgcagacatattggaggaacttcgtatcagtaaacagaaactggtggaattgggttccagggcaggggctcttaagcaaatgctacttgatattctagaggatactcatgaaatacgtcacatctgtataatcgggagaaattgtgtacttaagaaagaaaacgatgagatagagtgctccgtgcccctagataaggagattgctgaagaagaagaagaagaaattgaaatgcttttggaaaattatcttcagagatgtgaatcttgccatggtcaagctgaaaggctccttgattctgcaaaagagatggaagactcaattgctgtaaatttgagttctcgaaagcttgaggtgagcagattcgaggtgattctacacgttggaacattttgtgttgctgatggtgctctggatgcaggtatatttggcatgaacttaagatcctatctacaggaacatgtgtttgcattctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="37267" stop="31467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36967" g_stop="36922" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36921" i_stop="36513" i_length="409">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36512" g_stop="36432" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="127" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36431" i_stop="36351" i_length="81">
            <donor d_prob="0.934" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36350" g_stop="36185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="293" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36184" i_stop="36093" i_length="92">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36092" g_stop="36047" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="339" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36046" i_stop="33834" i_length="2213">
            <donor d_prob="0.162" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33833" g_stop="33753" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="420" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32843" g_stop="32761" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="503" r_length="83" r_score="0.916"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940">
            <donor d_prob="0.901" d_score="0.92"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31820" g_stop="31777" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="547" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106">
            <donor d_prob="0.727" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31670" g_stop="31658" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="560" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E424368" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36967" e_stop="36922"/>
          <exon e_start="36512" e_stop="36432"/>
          <exon e_start="36350" e_stop="36185"/>
          <exon e_start="36092" e_stop="36047"/>
          <exon e_start="33833" e_stop="33753"/>
          <exon e_start="32843" e_stop="32761"/>
          <exon e_start="31820" e_stop="31777"/>
          <exon e_start="31670" e_stop="31658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATACAAAGATTGGAACATAGGCTGTGGGATTTAGAACCACGTGTGAGTATGGAACATAGTGAGTACATAAGTAATGTTTGTTTTTCTTCTTCTTTATATGAATTGTTCCCTTTCCCGCCCATTCCTTCTTCCACCAATTGACTATATGTTGGAAGCAAGTGACTTCTCCCAGTAAACAATGTTAACTTGGTGAAAGGGGATGAAAATGCAAGGAATTTTATCACTTCCCTTCAAATTTTCTGTCCATTACTTCTGTTCTAATATAGTATTTAAAAAAAACATTTTAGAGGATTGTCCCGAGCTTGTAATATGTTAAACAGATCTTATTCTCTCTTAATGTAACATGCTGGCCTACTTTCTAGAGTGGTCCCTTAGAATTAAGTATCTCTCTTTCCGCCTTACATGGTATGGTTACTTTCAATTTAGAAATACTCCGCCTCGCTTGGTGCAGGTCCAAGCACTACTTGAGGTTTTGCCCAACCGATTAACTGCAGACATATTGGAGGAACTTCGCATCAGTAAACAGAAACTAGTACGATTACCATTCAGCTGTACCTTATAAAATTAGTCTTGGTACATTCTATTATGACTTCCCTTCTCTTGCTTGTGACAGGTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCAAATCTGTATAATTGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAGGTGTGCTTATAATATTCCCATACTGATTCTTGCATACTATACCAGATCAATGATGCTTCTTACACTTGCTTATATGTCTTTCTATTTTGCAGAAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAGGTTGTGTATTGGTGCTATTTCAAATCCCTTAGTGTAGATAGTATACCTCATTACTTGTTGCATACTTAGTTTCTGTGTTTACTCTGCAATCACATAATCAAGCAACATGCACTGGTTGGGCTGTCAGATTCAAATGAAGCTCTGCAGAACAAGGAGCCAATAACAAAATTTAAAGGACACCGTAATTTTATTGAGCAATAGTACACATTAAATCTTGAAAAGTGAACTGCAGTTTTCTATCTCTGAACATGTCTTGATAACTTTTTTGGTGTATGGAAGGGCCTATTTCACATTCGAGGTAAGGTTTTCTCATTTGCTATATACTACCTGGCTCTTATAATGAAATATTGGCACAAACTTTTGAATGATTCTTCCTCCATCCCAATTCATATGACATTCTTTCTGTTTTGAAACATCCCAAACTGTTTGTCACATTTCTTTAATATGCATTTTTACAACTTTCTTGAATTCACATTCATTAACTTCAAATTTTGAACCTAACACATTAAAAAAGGCTCTTACCAAACACCCCAAAAAATGTTAAAGTATACCAACATGACTATGTCTTAACCTCATCTAGTTGATATGATTTGAATGGCTCTTTGTTTCTGATGTGTCCTATTCTTTGCTATAGTTTCCATCAGTCGTGAGGGCGTAGGTCTTTTAGGTCAACGTTTCTCCCTGTGATTTTAGGTCTACATTTCACATTTTTACACTCTACAAATTGATCTATTTGAAGGTCTATGTAGGACATGGCCAAATCATCCTTGGCAACCTCCCAATTTATCCTCTGGGTTTACTACTTGTACTTTTCATCTAATGTAAAGGGCAACCCGGTGCACTTACGCCCCCACTACGTGCAGACCTTAAAGGTTATTGTACGCAGTCTTACACTACATTTCTACTAGAGACTGTTTCCACAGCTCAAACATATGGCAACAACTGTACCAGTTACACCAGGAATCCCCTTCACTTCTCCTCGAATGTGATCACTTATATTTTTCTCCATCCTGACATTCTCTTCTACATAACCTCATCTTGTTGATATGTTGGGCTTTACTGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAGGTTTGTACATGTCTTATTACTTTTCTCTTAGCTCTTTATCCTTGTGTTGGTGAACTGGGTGATGTAAAGTTGAAAAGCGATAACAGTGCATATGTAGGGAAAATTGGTCTAAGTTGCTCTCGTTTATTTGGAGAACTCTTCTATTTAATTTCATCCCCTGAACTTTCTGAAACAGTTCTCATGCTTTTAGAAACACACTGGAAAGACACGTTATAAGCTGGTTTCTTTCTGCAGATAAATTTAGTGTCAGGCAGAAGTATCGATGGCCTGCTAACAGATTCTGCTAGCGTTCTTGATCAGTGAGCCGTTTGTTTTAGTTGTGAGGATGAGACATCAACCAAAGAAAAAACTAGGGCATTAAAAACTTCTATATATGACTTCACAAACGAGAACTTGTACTGAAATTTCAATGAGTGAATGTGTACTTTGTCTTGATAAGAAGAATAACTGTGTAAGAAACTGATAATCCCACAAAAGATGAAAAAAGTATTTAAAGAACAGAGTAAGAGATAAGTAGATGAAAGCATGTAACCATAAATTCCATACTGTACATTTGATAACCTTTTTCTTTCAAGTTTTGGTGTGATAAGTTGTGCTGTACCTTGACTAAACAATATTTAGACACGCTTTTACTGTAGAAAAGCAAGATTCTTTAGCTAAAACTTCTAAGATTTCTGGATATGAATGCATACAAGAAATCAATGAAATATCTACTAAGGTTGTCGATGATGATTGACAGATCAGTTAAAAGCTTGCAACTCAAACAAGATTATCAGATTTTTCAATTGGTGAATGTGTACTTGATTTGGTCGTGTTTTGACTCCTTTGTGGTCTACTGATGCATAATTATGAAATATCATAAGTGGGCAGACTTGATTTTAATGTAAATTTTTTGCTTGTCCTTTTCAGTTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAGGTATTTGTACAACTAATATAAACAGAAAACAAGCTAAACATATCCAGTATTTTCTTCTTTGATATCTCTTCATGAGAATCAGTTGTTGCCACTTAGTTTTGTCTGCTCAGACATTTTTTGTGATGCATGTGTCCAACTTCGTAATTCAAGTCTCCCTGATCAGTCCTTGTATTGACCTGAGAAAAAAAATTATAAACATACGAGGTTGTCAGTTATTGCTATCTGAGTAATCAGGTTTCATCCCTTTCAGGTTCCATTCCTGCTTCTAAGTGTCGTTAGAATTTTCCTTGGGTTAAAAACCACTCATGGTTTGAACGAAAATGTCATTCGTAATGAGGGGTTTGTACCTTTTCTGAGGCAAAATCTTTAACCTTTAGTTTCACACCTACAAATCGGTGCATCTGTAGGTTGATGTAGGACATGATCAGACCTTCTCTCATTTCATCCTAAATGTGTGCTCGTATAATATTTTATTACTTTGTGTTATAACGTTATCATTACCTGGTCATGTATAGTTTTTAAAAAATTTCATGCATATTCTCCTATGTCGATTTGTATTAAATGCTTCCAAGTAAAGACTAATTAATGATGTAGAAATTCTAAACTCCCATAAAAATTTTGGCACCACTTGATGCATGCATCTTTCGGCGAATATGTTCATTTTTAATCTGATTTTGTATGACCACACATTCAACATCCATCTTATTTCTTAGCATTTCATCTTGACAATCTAGAACCTTATTTAGTACAAATCTTTGGAGAGCCAGAAAGTAGAGAATGTGTTGCAATTGAATTATAAAATACAAAAGATGGTTTTCTTTTTCTATTACAGTGCTGCAAATAGTTCATCTGTATAAAAGGGGATAATGTTCAAATATTCAAATTGGTACGCATGTATACTAATACATGTTATAACACACCTACTTTGGCTTCTGTACAGGTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTGGTATGTTTCTTAGATCTCGAGAGCTCGTTATCAATATCTCCTCATCTTTGGGAAAATATTTCCAGAATTTTGTCTTCTCATCATATACTTGTCTAATTAAATGCAGTTTGCATTCTGGC</genome_strand>
        <mrna_strand>ACGGATACAAAGATTGGAACATAGGCTGTGGGATTTAGAACCACGT.........................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAGCACTACTTGCGGTTTTGCCTAACCGATTAACTGCAGACATATTGGAGGAACTTCGTATCAGTAAACAGAAACTG.................................................................................GTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCACATCTGTATAATCGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCCGTGCCCCTAGATAAGGAGATTGCTGAAG............................................................................................AAGAAGAAGAAGAAATTGAAATGCTTTTGGAAAATTATCTTCAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAGATGGAAGACTCAATTGCTGTAAATTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGAAAGCTTGAGGTGAGCAGATTCGAGGTGATTCTACACGTTGGAACATTTTGTGTTGCTGATGGTGCTCTGGATGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTGGCATGAACTTAAGATCCTATCTACAGGAACATGTG..........................................................................................................TTTGCATTCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242161" ref_strand="+" ref_description="SGN-E242161 [cLED-37-N16]">
      <seq>ggaacatagtccaagcactacttgaggttttgcccaaccgattaactgcagacatattggaggaacttcgcatcagtaaacagaaactagtggaattgggttccagggcaggggctcttaagcaaatgctacttgatattctagaggatactcatgaaatacgtcaaatctgtataattgggagaaattgtgtacttaagaaagaaaacgatgagatagagtgctcggtgcccctagataaggacattgcagaagaagaagaggaagaaattgaaatgcttttggagaattatcttcagagatgtgaatcttgccatggtcaagctgaaaggctccttgattctgcaaaagaaatggaagactcaattgctgtaaacttgagttctcgaaggcttgaggtgagcagatttgagttgattctacaggttggaacattttgtgttgctgttggtgctctggtagcaggtatatttggcatgaacttaagatcctatctagaggaacatgtgtttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="36812" stop="31472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36512" g_stop="36432" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="89" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36431" i_stop="36351" i_length="81">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36350" g_stop="36185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="255" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36184" i_stop="36093" i_length="92">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36092" g_stop="36047" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="301" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36046" i_stop="33834" i_length="2213">
            <donor d_prob="0.162" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33833" g_stop="33753" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="382" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32843" g_stop="32761" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="465" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31820" g_stop="31777" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="509" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31670" g_stop="31664" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="516" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E242161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36512" e_stop="36432"/>
          <exon e_start="36350" e_stop="36185"/>
          <exon e_start="36092" e_stop="36047"/>
          <exon e_start="33833" e_stop="33753"/>
          <exon e_start="32843" e_stop="32761"/>
          <exon e_start="31820" e_stop="31777"/>
          <exon e_start="31670" e_stop="31664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAGCACTACTTGAGGTTTTGCCCAACCGATTAACTGCAGACATATTGGAGGAACTTCGCATCAGTAAACAGAAACTAGTACGATTACCATTCAGCTGTACCTTATAAAATTAGTCTTGGTACATTCTATTATGACTTCCCTTCTCTTGCTTGTGACAGGTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCAAATCTGTATAATTGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAGGTGTGCTTATAATATTCCCATACTGATTCTTGCATACTATACCAGATCAATGATGCTTCTTACACTTGCTTATATGTCTTTCTATTTTGCAGAAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAGGTTGTGTATTGGTGCTATTTCAAATCCCTTAGTGTAGATAGTATACCTCATTACTTGTTGCATACTTAGTTTCTGTGTTTACTCTGCAATCACATAATCAAGCAACATGCACTGGTTGGGCTGTCAGATTCAAATGAAGCTCTGCAGAACAAGGAGCCAATAACAAAATTTAAAGGACACCGTAATTTTATTGAGCAATAGTACACATTAAATCTTGAAAAGTGAACTGCAGTTTTCTATCTCTGAACATGTCTTGATAACTTTTTTGGTGTATGGAAGGGCCTATTTCACATTCGAGGTAAGGTTTTCTCATTTGCTATATACTACCTGGCTCTTATAATGAAATATTGGCACAAACTTTTGAATGATTCTTCCTCCATCCCAATTCATATGACATTCTTTCTGTTTTGAAACATCCCAAACTGTTTGTCACATTTCTTTAATATGCATTTTTACAACTTTCTTGAATTCACATTCATTAACTTCAAATTTTGAACCTAACACATTAAAAAAGGCTCTTACCAAACACCCCAAAAAATGTTAAAGTATACCAACATGACTATGTCTTAACCTCATCTAGTTGATATGATTTGAATGGCTCTTTGTTTCTGATGTGTCCTATTCTTTGCTATAGTTTCCATCAGTCGTGAGGGCGTAGGTCTTTTAGGTCAACGTTTCTCCCTGTGATTTTAGGTCTACATTTCACATTTTTACACTCTACAAATTGATCTATTTGAAGGTCTATGTAGGACATGGCCAAATCATCCTTGGCAACCTCCCAATTTATCCTCTGGGTTTACTACTTGTACTTTTCATCTAATGTAAAGGGCAACCCGGTGCACTTACGCCCCCACTACGTGCAGACCTTAAAGGTTATTGTACGCAGTCTTACACTACATTTCTACTAGAGACTGTTTCCACAGCTCAAACATATGGCAACAACTGTACCAGTTACACCAGGAATCCCCTTCACTTCTCCTCGAATGTGATCACTTATATTTTTCTCCATCCTGACATTCTCTTCTACATAACCTCATCTTGTTGATATGTTGGGCTTTACTGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAGGTTTGTACATGTCTTATTACTTTTCTCTTAGCTCTTTATCCTTGTGTTGGTGAACTGGGTGATGTAAAGTTGAAAAGCGATAACAGTGCATATGTAGGGAAAATTGGTCTAAGTTGCTCTCGTTTATTTGGAGAACTCTTCTATTTAATTTCATCCCCTGAACTTTCTGAAACAGTTCTCATGCTTTTAGAAACACACTGGAAAGACACGTTATAAGCTGGTTTCTTTCTGCAGATAAATTTAGTGTCAGGCAGAAGTATCGATGGCCTGCTAACAGATTCTGCTAGCGTTCTTGATCAGTGAGCCGTTTGTTTTAGTTGTGAGGATGAGACATCAACCAAAGAAAAAACTAGGGCATTAAAAACTTCTATATATGACTTCACAAACGAGAACTTGTACTGAAATTTCAATGAGTGAATGTGTACTTTGTCTTGATAAGAAGAATAACTGTGTAAGAAACTGATAATCCCACAAAAGATGAAAAAAGTATTTAAAGAACAGAGTAAGAGATAAGTAGATGAAAGCATGTAACCATAAATTCCATACTGTACATTTGATAACCTTTTTCTTTCAAGTTTTGGTGTGATAAGTTGTGCTGTACCTTGACTAAACAATATTTAGACACGCTTTTACTGTAGAAAAGCAAGATTCTTTAGCTAAAACTTCTAAGATTTCTGGATATGAATGCATACAAGAAATCAATGAAATATCTACTAAGGTTGTCGATGATGATTGACAGATCAGTTAAAAGCTTGCAACTCAAACAAGATTATCAGATTTTTCAATTGGTGAATGTGTACTTGATTTGGTCGTGTTTTGACTCCTTTGTGGTCTACTGATGCATAATTATGAAATATCATAAGTGGGCAGACTTGATTTTAATGTAAATTTTTTGCTTGTCCTTTTCAGTTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAGGTATTTGTACAACTAATATAAACAGAAAACAAGCTAAACATATCCAGTATTTTCTTCTTTGATATCTCTTCATGAGAATCAGTTGTTGCCACTTAGTTTTGTCTGCTCAGACATTTTTTGTGATGCATGTGTCCAACTTCGTAATTCAAGTCTCCCTGATCAGTCCTTGTATTGACCTGAGAAAAAAAATTATAAACATACGAGGTTGTCAGTTATTGCTATCTGAGTAATCAGGTTTCATCCCTTTCAGGTTCCATTCCTGCTTCTAAGTGTCGTTAGAATTTTCCTTGGGTTAAAAACCACTCATGGTTTGAACGAAAATGTCATTCGTAATGAGGGGTTTGTACCTTTTCTGAGGCAAAATCTTTAACCTTTAGTTTCACACCTACAAATCGGTGCATCTGTAGGTTGATGTAGGACATGATCAGACCTTCTCTCATTTCATCCTAAATGTGTGCTCGTATAATATTTTATTACTTTGTGTTATAACGTTATCATTACCTGGTCATGTATAGTTTTTAAAAAATTTCATGCATATTCTCCTATGTCGATTTGTATTAAATGCTTCCAAGTAAAGACTAATTAATGATGTAGAAATTCTAAACTCCCATAAAAATTTTGGCACCACTTGATGCATGCATCTTTCGGCGAATATGTTCATTTTTAATCTGATTTTGTATGACCACACATTCAACATCCATCTTATTTCTTAGCATTTCATCTTGACAATCTAGAACCTTATTTAGTACAAATCTTTGGAGAGCCAGAAAGTAGAGAATGTGTTGCAATTGAATTATAAAATACAAAAGATGGTTTTCTTTTTCTATTACAGTGCTGCAAATAGTTCATCTGTATAAAAGGGGATAATGTTCAAATATTCAAATTGGTACGCATGTATACTAATACATGTTATAACACACCTACTTTGGCTTCTGTACAGGTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTGGTATGTTTCTTAGATCTCGAGAGCTCGTTATCAATATCTCCTCATCTTTGGGAAAATATTTCCAGAATTTTGTCTTCTCATCATATACTTGTCTAATTAAATGCAGTTTGCAT</genome_strand>
        <mrna_strand>GTCCAAGCACTACTTGAGGTTTTGCCCAACCGATTAACTGCAGACATATTGGAGGAACTTCGCATCAGTAAACAGAAACTA.................................................................................GTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCAAATCTGTATAATTGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAG............................................................................................AAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG..........................................................................................................TTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245163" ref_strand="+" ref_description="SGN-E245163 [cLEF-13-G16]">
      <seq>aacaataaaaaatttaaaagcaaataatcaaatttttggtccacaataaagcatttttttatgatcatatagaaaatcttgagccatcctttcctgatttgtctgtactaaatattagtttggtaagttactgaaacaggtttccatttgttcatccaactgcagatgtgaatcttgccatggtcaagcctgaaaggctccttgattctgcaaaagaaatggaagactcaattgctgtaaacttgagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="34298" stop="33450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33998" g_stop="33753" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E245163" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33998" e_stop="33753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAG-CTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG</genome_strand>
        <mrna_strand>AACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332777" ref_strand="+" ref_description="SGN-E332777 [cTOD-18-D21]">
      <seq>aaattggaaaaataagataaattggtccttattagacacgaagtatcaactctgtgactcgattgattatgcaagtgtataactgagtaggagttatgattatattcttataatagaatacaccaccaacatatctagtgtagtctcacaaacagtgtttgaggagggtagagtgtacgtaaaccttaccccttatcttgagaggtagagatattgtttcctatagatcctcgcctcaaagaaaagcgtatcaaagaagatcggaaacataaataacgaagtgaagaaatcataggaaagcattctgaagaaagaacagtaattacaacaaaatagtgtgataaccgcagtacaagagacagtgaatagtgatagataagaacctggagagaaactgcatacgctatccttgaagtgcattgaaggtaatctttaagtaatccacttttttcttatacataccactcacacttcctatattttgaattttatattcatggcaaattatatgacagttagagcatagtggtccaaacaataaaaaatttaaaagcaaataatcaaatttttggtccacaataaagcatttttttatgatcatatagaaaatcttgagccatcctttcctgatttgtctgtactaaatattagtttggtaagttactgaaacaggtttccatttgttcatccaactgcagatgtgaatcttgccatggtcaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="34831" stop="33508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34531" g_stop="33808" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E332777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34531" e_stop="33808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTG</genome_strand>
        <mrna_strand>AAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317851" ref_strand="+" ref_description="SGN-E317851 [cTOA-30-N21]">
      <seq>tgaccttccactcaactccacataactttgttaatctcatattgttttacagaactcgcttttactttggtaggcatcttatagttgcatatgccaatattgtggcaccttcagtatgatcattctagtttaatcatgtgttacagctttcctattatgcttttctcctgcacactgaacctagatatcttgattttttgcatttaggcactacaatccctttagttccacttcaactcatttttcttatgggagctaaacctaaagtacatatcttttgccttcacttctaattattctaaaacccttgctctctagagtgcataactaactttttaaccactgcactaatattttcttcactatcattataatataaatatgtcaaaattaacttaaactccataaactaggtcagaccaatagataatatctacaaatgtgaagaagaaaagaaattggaaaaataagataaattggtccttattagacacgaagtatcaactctgtgactcgattgattatgcaagtgtataactgagtaggagttatgattatattcttataatagaatacaccaccaacatatctagtgtagtctcacaaacagtgtttgaggagggtagagtgtacgtaaaccttaccccttatcttgagaggtagagatattgtttcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="35286" stop="34008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34986" g_stop="34308" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E317851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34986" e_stop="34308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTAT</genome_strand>
        <mrna_strand>TGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401004" ref_strand="+" ref_description="SGN-E401004 [PPC-2-F16]">
      <seq>gttcgatcgccggagtttcgagttttgattacaggaggatacgcgattttccggtcgcggatggagtttccgttctcgcgtaagaatcacgcgacttctctgagagctcggaaggtgagagtagttgagtgttttgcgaaatcgactgagctggaaacgttggtgaaggacggcggcgatgatgataatgatgacggcgatgagattcggggagatgatgataaggttgtaactcatggagactctgttagttcgcagaggagtgcttctgcctccggtggcgattcattgtcccttggaatccgtgaacctgtttatgaggtagtggaggtgaagacatgtgggacggtagcaaaaaggaaaataaacagaaggcacttgctgaagtccagtggtttacgtcctcgagatatcaggagtgttgatccgtcattgtggttgacaaattcaatgcctgctttattggtccgtgagcatgcaattctattgaatctaggttctttacgggccatagtaatgcaagaacgagtccctatatttaattataatcgtctaggagggaaggctttcatcgattcattgttaccacggctaaatcctacaagcacaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="40797" stop="37228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40497" g_stop="40177" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40176" i_stop="39053" i_length="1124">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39052" g_stop="38980" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="394" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38979" i_stop="38559" i_length="421">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38558" g_stop="38488" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="465" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38487" i_stop="37759" i_length="729">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37758" g_stop="37673" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="551" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37672" i_stop="37592" i_length="81">
            <donor d_prob="0.371" d_score="0.94"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37591" g_stop="37528" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="615" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E401004" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40497" e_stop="40177"/>
          <exon e_start="39052" e_stop="38980"/>
          <exon e_start="38558" e_stop="38488"/>
          <exon e_start="37758" e_stop="37673"/>
          <exon e_start="37591" e_stop="37528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAGGTGCTTAACTTTATTGATCCTTTATTCAGCTTCACAATTTTCGTTGCGCGTTATTTTCTAGTCTAAATTTTGCTTATAGCGTGAAACTTGGTTTAATATACAGAAATTGAGTAGATTGACTGATTAGTTGTACTGCAGAGCCAGATACGGAGTTTGAAGTTCATGAATTCCAACAATAACTTCAAGTTAATATACAAGAATAACTAGTTCGCGTTCAAATATTTATAGATACTTAGTGAATATTTTAGCATATATACATGATTTGAGCAAAAGCTACCGGAAAACTTACACTCGTCAAATCTACTTGATGCATCATTTTTAGTTTAGATAAGTTATTCTGGTGGCCACAATAATGTTTAATCTGCACTGTGAGAAATGCTGAAACATAAACGTATGGAATTGTAACTTGTTCTTGGAGGAGTTTGCAATATGATTATGTAGGTAAAACAAGGGAAATTGGGAATGACGAATTCCTTAAAAGAAGATGTTTTGAAATCTTTCAGCTTCTTATATAGGCATTCATATTTGCTTATGGTTGTGATGTATTATATTTAATCTGCAATACAAAATGAATCCTATAGGACTAACATAGAAAATCAAGAGGCAGAAGAGACTTCTGGTCAACTTTGGGTGTCTTTACAGTAGTCAAAACTATGTCAGTGAAAGATGAAAGGAGGGTAGAATGCAACTTATCGGATTGCGGTTTAATATTCTTAATGAACAAAAAAAAAAGTTTCCAGACTGTCAACAGTCGATTGAAGTATTGAATTTAAAGATATTGATGAAGCTGCATCTGTTACTCACAGAGCGACTCCTCCCTCTTAATTTCAACTTCCTGATTATGTTAGATAGCGCACCAGAAAGATCCCGACATTGTGTTCTGCTTGTAAGTACAAATATTTTACATTCCCTTCATAACAAGAAGAAAACATGCTGGGAGAACTTCTTGATGGTTATCTCACAATTAATATGTGATGCGTCTCTTCATAATAGACAATCATAAATGTTGAGCTGGTTAATTACTTCAATGGTTAATTTGTATCAACATTTGGAAAATTCCCATCCTCCCTCAAAGTGAATTAAGATGGAAAAGTTATTGACAATACGTCGGTTCTTTTCTTAAGGTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGTCCAGTGGTGAGTCTTTTCACTTCTTTTATCTCAAAATGTGTTACCTCTGTTACCTATAAAGTGGAGATTATATGATGTAACTGACTATGAACTCACAAAAAAGTTCTGTACTTGAGAGTAACTCCATCTATCAATAATTGTGTACAAACATTCAGCTCTAATGTTTACTTATACCAATTACCTGGTGCATTTTGTGTTCTCTAAAAAATTAATCAGATAAAAATCTCTAGTTACTTTTCATTCTATTATTATCTCAAATCATTAATACTCAAAAGCATTTGCTTCTATGTTTTAACCTCGATCATACTAGGAGTCTTTCTAAATTTTATTTTTGAAGATACTATAACCCAGTTAACTGATCTGAAATCCCTATATTAAAGCCTTTTTCTCATGTCACTTACTGGTTTCACTAATATGCTGAAAACAGGATTACGTCCTCGAGATATCAGGAGTGTTGATCCGTCATTATGGTTGACAAATTCAATGCCTGCTTTATTGGTATTTCAATTGCTATCAACTATGTATTTTTTCCATAAAAAGAACACTTTTATTTACTTGTTCTGACTTATATTGAGATAACCTTCTAAACATGGTTGAAGCAACAATTTTAAATGAACAATCTATTTTCAGTATAAGAACTCTGCTACATGCAACTTATGAATGTTATTTCAGATTAAATTTTGGTATTTCCTAATTCATAGAACAAGCTCATTGAGTACCCCAATGCTTTTTTTGTAATTTCTCTTGGTAAAATTTGGCATACACTTCATGGCAAGATGTCTCTTAATGAACTCATGTTTAGGCAAAGTGATGGCCGTTGGCTCATGCACACAAGGCTCATCTTTGGAAGGCACTGATAGAAAAGAAATTCTTTTTCTATTTTGCTGATTCATCCTTGTTTGTTTTGCTACTGAAGAACATCTTTTCCTTATCCTTGGCGTTTTTTCTCTTTTATTACTCTTTACGAATCTAAAAACAACATAGTTGGAAGTTTTTATTGCTTATTACCATGACTGTTGAGGTATAAGTAACTGTTTGTTACTCAGATTTCATAGAGATACTGTTGAAGATTAGCCAAGTTGTGCAGTTCCACCTTAGCTTTTAATTTAAGATATTCTCTATCATAATTTGTGCTAAAGAGTTTTAGATTAACTGCTTGCTCAAATTAATCATTTAACTCCTCTACTAGCTGTTTTTGATGGACTTCATTTACAAATCTTCTTCCAGGTCCGTGAGCATGCAATTCTATTGAATCTAGGTTCTTTACGAGCCATAGTAATGCAAGAGCGAGTCCTTATATTTAATTATAATCGGTAATATTTCATATTAGATATTCTAATCATTTTTGGTCAGATCTAGCAGTGAACTTAACAATATAACTGGTCTGCTTATAGTCTAGGAGGAAAGGCTTTCATCGATTCATTGTTACCACGGCTAAATCCTACAAGCACAAATGGA</genome_strand>
        <mrna_strand>GTTCGATCGCCGGAGTTTCGAGTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGCGGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGACTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTTTTGCGAAATCGACTGAGCTGGAAACGTTGGTGAAGGACGGCGGCGATGATGATAATGATGACGGCGATGAGATTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCATTGTCCCTTGGAATCCGTGAACCTGTTTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGGTGAAGACATGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGTCCAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACGTCCTCGAGATATCAGGAGTGTTGATCCGTCATTGTGGTTGACAAATTCAATGCCTGCTTTATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTGAGCATGCAATTCTATTGAATCTAGGTTCTTTACGGGCCATAGTAATGCAAGAACGAGTCCCTATATTTAATTATAATCG.................................................................................TCTAGGAGGGAAGGCTTTCATCGATTCATTGTTACCACGGCTAAATCCTACAAGCACAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736845" ref_strand="+" ref_description="SGN-E736845 [LC07CB07]">
      <seq>aatatctagaagattctcgagatctctcaactcttatcgtgatctccggcagctttctctgcaatggcggcaaatgctctgtatttacttcagttaccggttcgatcgccggagtttcgatttttgattacaggaggatacgcgattttccggtcgaagatggagtttccgttctcgcgtaagaatcacgcgatttctctgagagctcggaaggtgagagtagttgagtgtgttgcgaaatcgactgagatggaagcgttgatgaaggacggtggagatgatgataatgatgaaggtgatgaggttcggggagatgatgataaggttgtaactcatggagactctgttagttcgcagaggagtgcttctgcctccggtggcgattcgttgtcccttggaatccgtgaacctgtttatgaggtagtggaggtaaagacgtgtgggacggtagcaaaaaggaaaataaacagaaggcacttgctgaagtccagtggattacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="40896" stop="38673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40596" g_stop="40177" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40176" i_stop="39053" i_length="1124">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39052" g_stop="38980" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="493" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E736845" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40596" e_stop="40177"/>
          <exon e_start="39052" e_stop="38980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTAGAAGATTCTCGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAGGTGCTTAACTTTATTGATCCTTTATTCAGCTTCACAATTTTCGTTGCGCGTTATTTTCTAGTCTAAATTTTGCTTATAGCGTGAAACTTGGTTTAATATACAGAAATTGAGTAGATTGACTGATTAGTTGTACTGCAGAGCCAGATACGGAGTTTGAAGTTCATGAATTCCAACAATAACTTCAAGTTAATATACAAGAATAACTAGTTCGCGTTCAAATATTTATAGATACTTAGTGAATATTTTAGCATATATACATGATTTGAGCAAAAGCTACCGGAAAACTTACACTCGTCAAATCTACTTGATGCATCATTTTTAGTTTAGATAAGTTATTCTGGTGGCCACAATAATGTTTAATCTGCACTGTGAGAAATGCTGAAACATAAACGTATGGAATTGTAACTTGTTCTTGGAGGAGTTTGCAATATGATTATGTAGGTAAAACAAGGGAAATTGGGAATGACGAATTCCTTAAAAGAAGATGTTTTGAAATCTTTCAGCTTCTTATATAGGCATTCATATTTGCTTATGGTTGTGATGTATTATATTTAATCTGCAATACAAAATGAATCCTATAGGACTAACATAGAAAATCAAGAGGCAGAAGAGACTTCTGGTCAACTTTGGGTGTCTTTACAGTAGTCAAAACTATGTCAGTGAAAGATGAAAGGAGGGTAGAATGCAACTTATCGGATTGCGGTTTAATATTCTTAATGAACAAAAAAAAAAGTTTCCAGACTGTCAACAGTCGATTGAAGTATTGAATTTAAAGATATTGATGAAGCTGCATCTGTTACTCACAGAGCGACTCCTCCCTCTTAATTTCAACTTCCTGATTATGTTAGATAGCGCACCAGAAAGATCCCGACATTGTGTTCTGCTTGTAAGTACAAATATTTTACATTCCCTTCATAACAAGAAGAAAACATGCTGGGAGAACTTCTTGATGGTTATCTCACAATTAATATGTGATGCGTCTCTTCATAATAGACAATCATAAATGTTGAGCTGGTTAATTACTTCAATGGTTAATTTGTATCAACATTTGGAAAATTCCCATCCTCCCTCAAAGTGAATTAAGATGGAAAAGTTATTGACAATACGTCGGTTCTTTTCTTAAGGTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGTCCAGTG</genome_strand>
        <mrna_strand>AATATCTAGAAGATTCTCGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGTCCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739781" ref_strand="+" ref_description="SGN-E739781 [LC18DC10]">
      <seq>aatatctagaagattctcgagatctctcaactcttatcgtgatctccggcagctttctctgcaatggcggcaaatgctctgtatttacttcagttaccggttcgatcgccggagtttcgatttttgattacaggaggatacgcgattttccggtcgaagatggagtttccgttctcgcgtaagaatcacgcgatttctctgagagctcggaaggtgagagtagttgagtgtgttgcgaaatcgactgagatggaagcgttgatgaaggacggtggagatgatgataatgatgaaggtgatgaggttcggggagatgatgataaggttgtaactcatggagactctgttagttcgcagaggagtgcttctgcctccggtggcgattcgttgtcccttggaatccgtgaacctgtttatgaggtagtggaggtaaagacgtgtgggacggtagcaaaaaggaaaataaacagaaggcacttgctgaagtccagtggattacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="40896" stop="38673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40596" g_stop="40177" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40176" i_stop="39053" i_length="1124">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39052" g_stop="38980" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="493" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E739781" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40596" e_stop="40177"/>
          <exon e_start="39052" e_stop="38980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTAGAAGATTCTCGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAGGTGCTTAACTTTATTGATCCTTTATTCAGCTTCACAATTTTCGTTGCGCGTTATTTTCTAGTCTAAATTTTGCTTATAGCGTGAAACTTGGTTTAATATACAGAAATTGAGTAGATTGACTGATTAGTTGTACTGCAGAGCCAGATACGGAGTTTGAAGTTCATGAATTCCAACAATAACTTCAAGTTAATATACAAGAATAACTAGTTCGCGTTCAAATATTTATAGATACTTAGTGAATATTTTAGCATATATACATGATTTGAGCAAAAGCTACCGGAAAACTTACACTCGTCAAATCTACTTGATGCATCATTTTTAGTTTAGATAAGTTATTCTGGTGGCCACAATAATGTTTAATCTGCACTGTGAGAAATGCTGAAACATAAACGTATGGAATTGTAACTTGTTCTTGGAGGAGTTTGCAATATGATTATGTAGGTAAAACAAGGGAAATTGGGAATGACGAATTCCTTAAAAGAAGATGTTTTGAAATCTTTCAGCTTCTTATATAGGCATTCATATTTGCTTATGGTTGTGATGTATTATATTTAATCTGCAATACAAAATGAATCCTATAGGACTAACATAGAAAATCAAGAGGCAGAAGAGACTTCTGGTCAACTTTGGGTGTCTTTACAGTAGTCAAAACTATGTCAGTGAAAGATGAAAGGAGGGTAGAATGCAACTTATCGGATTGCGGTTTAATATTCTTAATGAACAAAAAAAAAAGTTTCCAGACTGTCAACAGTCGATTGAAGTATTGAATTTAAAGATATTGATGAAGCTGCATCTGTTACTCACAGAGCGACTCCTCCCTCTTAATTTCAACTTCCTGATTATGTTAGATAGCGCACCAGAAAGATCCCGACATTGTGTTCTGCTTGTAAGTACAAATATTTTACATTCCCTTCATAACAAGAAGAAAACATGCTGGGAGAACTTCTTGATGGTTATCTCACAATTAATATGTGATGCGTCTCTTCATAATAGACAATCATAAATGTTGAGCTGGTTAATTACTTCAATGGTTAATTTGTATCAACATTTGGAAAATTCCCATCCTCCCTCAAAGTGAATTAAGATGGAAAAGTTATTGACAATACGTCGGTTCTTTTCTTAAGGTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGTCCAGTG</genome_strand>
        <mrna_strand>AATATCTAGAAGATTCTCGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGTCCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411017" ref_strand="+" ref_description="SGN-E411017 [STM-14-A11]">
      <seq>cgagatctctcaatcttatcgtgatctccggcagttttctctgcaatggcggcaaatgctccgtatttacttcagttaccggttcgatcgccggagtttcgagttttgattacaggaggatacgcgattttccggtcgcggatggagtttccgttctcgcgtaagaatcacgcgacttctctgagagctcggaaggtgagagtagttgagtgttttgcgaaatcgactgagctggaaacgttggtgaaggacggcggcgatgatgataatgatgacggcgatgagattcggggagatgatgataaggttgtaactcatggagactctgttagttcgcagaggagtgcttctgcctccggtggcgattcattgtcccttggaatccgtgaacctgtttatgaggtagtggaggtgaagacatgtgggacggtagcaaaaaggaaaataaacagaaggcacttgctgaagtccagtggttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="40879" stop="38678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40579" g_stop="40177" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40176" i_stop="39053" i_length="1124">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39052" g_stop="38980" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="475" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E411017" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40579" e_stop="40177"/>
          <exon e_start="39052" e_stop="38980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAGGTGCTTAACTTTATTGATCCTTTATTCAGCTTCACAATTTTCGTTGCGCGTTATTTTCTAGTCTAAATTTTGCTTATAGCGTGAAACTTGGTTTAATATACAGAAATTGAGTAGATTGACTGATTAGTTGTACTGCAGAGCCAGATACGGAGTTTGAAGTTCATGAATTCCAACAATAACTTCAAGTTAATATACAAGAATAACTAGTTCGCGTTCAAATATTTATAGATACTTAGTGAATATTTTAGCATATATACATGATTTGAGCAAAAGCTACCGGAAAACTTACACTCGTCAAATCTACTTGATGCATCATTTTTAGTTTAGATAAGTTATTCTGGTGGCCACAATAATGTTTAATCTGCACTGTGAGAAATGCTGAAACATAAACGTATGGAATTGTAACTTGTTCTTGGAGGAGTTTGCAATATGATTATGTAGGTAAAACAAGGGAAATTGGGAATGACGAATTCCTTAAAAGAAGATGTTTTGAAATCTTTCAGCTTCTTATATAGGCATTCATATTTGCTTATGGTTGTGATGTATTATATTTAATCTGCAATACAAAATGAATCCTATAGGACTAACATAGAAAATCAAGAGGCAGAAGAGACTTCTGGTCAACTTTGGGTGTCTTTACAGTAGTCAAAACTATGTCAGTGAAAGATGAAAGGAGGGTAGAATGCAACTTATCGGATTGCGGTTTAATATTCTTAATGAACAAAAAAAAAAGTTTCCAGACTGTCAACAGTCGATTGAAGTATTGAATTTAAAGATATTGATGAAGCTGCATCTGTTACTCACAGAGCGACTCCTCCCTCTTAATTTCAACTTCCTGATTATGTTAGATAGCGCACCAGAAAGATCCCGACATTGTGTTCTGCTTGTAAGTACAAATATTTTACATTCCCTTCATAACAAGAAGAAAACATGCTGGGAGAACTTCTTGATGGTTATCTCACAATTAATATGTGATGCGTCTCTTCATAATAGACAATCATAAATGTTGAGCTGGTTAATTACTTCAATGGTTAATTTGTATCAACATTTGGAAAATTCCCATCCTCCCTCAAAGTGAATTAAGATGGAAAAGTTATTGACAATACGTCGGTTCTTTTCTTAAGGTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGTCCAGTG</genome_strand>
        <mrna_strand>CGAGATCTCTCAA-TCTTATCGTGATCTCCGGCAGTTTTCTCTGCAATGGCGGCAAATGCTCCGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGAGTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGCGGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGACTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTTTTGCGAAATCGACTGAGCTGGAAACGTTGGTGAAGGACGGCGGCGATGATGATAATGATGACGGCGATGAGATTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCATTGTCCCTTGGAATCCGTGAACCTGTTTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGGTGAAGACATGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGTCCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207113" ref_strand="+" ref_description="SGN-E207113 [cLEC-30-C5]">
      <seq>aacaccattataaccctcacattatccatatgaattggggaaatatctagaagattctcgagatctctcaactcttatcgtgatctccggcagctttctctgcaatggcggcaaatgctctgtatttacttcagttaccggttcgatcgccggagtttcgatttttgattacaggaggatacgcgattttccggtcgaagatggagtttccgttctcgcgtaagaatcacgcgatttctctgagagctcggaaggtgagagtagttgagtgtgttgcgaaatcgactgagatggaagcgttgatgaaggacggtggagatgatgataatgatgaaggtgatgaggttcggggagatgatgataaggttgtaactcatggagactctgttagttcgcagaggagtgcttctgcctccggtggcgattcgttgtcccttggaatccgtgaacctgtttatgaggtagtggaggtaaagacgtgtgggacggtagcaaaaaggaaaataaacagaaggcacttgctgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="40937" stop="38686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40637" g_stop="40177" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40176" i_stop="39053" i_length="1124">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39052" g_stop="38986" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="528" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E207113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40637" e_stop="40177"/>
          <exon e_start="39052" e_stop="38986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCATTATAACCCTCACATTATCCATATGAATTGGGGAAATATCTAGAAGATTCTCGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAGGTGCTTAACTTTATTGATCCTTTATTCAGCTTCACAATTTTCGTTGCGCGTTATTTTCTAGTCTAAATTTTGCTTATAGCGTGAAACTTGGTTTAATATACAGAAATTGAGTAGATTGACTGATTAGTTGTACTGCAGAGCCAGATACGGAGTTTGAAGTTCATGAATTCCAACAATAACTTCAAGTTAATATACAAGAATAACTAGTTCGCGTTCAAATATTTATAGATACTTAGTGAATATTTTAGCATATATACATGATTTGAGCAAAAGCTACCGGAAAACTTACACTCGTCAAATCTACTTGATGCATCATTTTTAGTTTAGATAAGTTATTCTGGTGGCCACAATAATGTTTAATCTGCACTGTGAGAAATGCTGAAACATAAACGTATGGAATTGTAACTTGTTCTTGGAGGAGTTTGCAATATGATTATGTAGGTAAAACAAGGGAAATTGGGAATGACGAATTCCTTAAAAGAAGATGTTTTGAAATCTTTCAGCTTCTTATATAGGCATTCATATTTGCTTATGGTTGTGATGTATTATATTTAATCTGCAATACAAAATGAATCCTATAGGACTAACATAGAAAATCAAGAGGCAGAAGAGACTTCTGGTCAACTTTGGGTGTCTTTACAGTAGTCAAAACTATGTCAGTGAAAGATGAAAGGAGGGTAGAATGCAACTTATCGGATTGCGGTTTAATATTCTTAATGAACAAAAAAAAAAGTTTCCAGACTGTCAACAGTCGATTGAAGTATTGAATTTAAAGATATTGATGAAGCTGCATCTGTTACTCACAGAGCGACTCCTCCCTCTTAATTTCAACTTCCTGATTATGTTAGATAGCGCACCAGAAAGATCCCGACATTGTGTTCTGCTTGTAAGTACAAATATTTTACATTCCCTTCATAACAAGAAGAAAACATGCTGGGAGAACTTCTTGATGGTTATCTCACAATTAATATGTGATGCGTCTCTTCATAATAGACAATCATAAATGTTGAGCTGGTTAATTACTTCAATGGTTAATTTGTATCAACATTTGGAAAATTCCCATCCTCCCTCAAAGTGAATTAAGATGGAAAAGTTATTGACAATACGTCGGTTCTTTTCTTAAGGTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGT</genome_strand>
        <mrna_strand>AACACCATTATAACCCTCACATTATCCATATGAATTGGGGAAATATCTAGAAGATTCTCGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467609" ref_strand="+" ref_description="SGN-E467609 [cSTB-1-E20]">
      <seq>cgttatctctcaatcttatcgtgatctccggcaggtttctctgcaatggcggcaaatgctccgtatttacttcagttaccggttcgatcgccggagtttcgagttttgattacaggaggatacgcgattttccggtcgcggatggagtttccgttctcgcgtaagaatcacgcgacttctctgagagctcggaaggtgagagtagttgagtgttttgcgaaatcgactgagctggaaacgttggtgaaggacggcggcgatgatgataatgatgacggcgatgagattcggggagatgatgataaggttgtaactcatggagactctgttagttcgcagaggagtgcttctgcctccggtggcgattcattgtcccttggaatccgtgaacctgtttatgaggtagtggaggtgaagacatgtgggacggtagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="40879" stop="38719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40579" g_stop="40177" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40176" i_stop="39053" i_length="1124">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39052" g_stop="39019" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="436" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E467609" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40579" e_stop="40177"/>
          <exon e_start="39052" e_stop="39019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAGGTGCTTAACTTTATTGATCCTTTATTCAGCTTCACAATTTTCGTTGCGCGTTATTTTCTAGTCTAAATTTTGCTTATAGCGTGAAACTTGGTTTAATATACAGAAATTGAGTAGATTGACTGATTAGTTGTACTGCAGAGCCAGATACGGAGTTTGAAGTTCATGAATTCCAACAATAACTTCAAGTTAATATACAAGAATAACTAGTTCGCGTTCAAATATTTATAGATACTTAGTGAATATTTTAGCATATATACATGATTTGAGCAAAAGCTACCGGAAAACTTACACTCGTCAAATCTACTTGATGCATCATTTTTAGTTTAGATAAGTTATTCTGGTGGCCACAATAATGTTTAATCTGCACTGTGAGAAATGCTGAAACATAAACGTATGGAATTGTAACTTGTTCTTGGAGGAGTTTGCAATATGATTATGTAGGTAAAACAAGGGAAATTGGGAATGACGAATTCCTTAAAAGAAGATGTTTTGAAATCTTTCAGCTTCTTATATAGGCATTCATATTTGCTTATGGTTGTGATGTATTATATTTAATCTGCAATACAAAATGAATCCTATAGGACTAACATAGAAAATCAAGAGGCAGAAGAGACTTCTGGTCAACTTTGGGTGTCTTTACAGTAGTCAAAACTATGTCAGTGAAAGATGAAAGGAGGGTAGAATGCAACTTATCGGATTGCGGTTTAATATTCTTAATGAACAAAAAAAAAAGTTTCCAGACTGTCAACAGTCGATTGAAGTATTGAATTTAAAGATATTGATGAAGCTGCATCTGTTACTCACAGAGCGACTCCTCCCTCTTAATTTCAACTTCCTGATTATGTTAGATAGCGCACCAGAAAGATCCCGACATTGTGTTCTGCTTGTAAGTACAAATATTTTACATTCCCTTCATAACAAGAAGAAAACATGCTGGGAGAACTTCTTGATGGTTATCTCACAATTAATATGTGATGCGTCTCTTCATAATAGACAATCATAAATGTTGAGCTGGTTAATTACTTCAATGGTTAATTTGTATCAACATTTGGAAAATTCCCATCCTCCCTCAAAGTGAATTAAGATGGAAAAGTTATTGACAATACGTCGGTTCTTTTCTTAAGGTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAA</genome_strand>
        <mrna_strand>CGTTATCTCTCAA-TCTTATCGTGATCTCCGGCAGGTTTCTCTGCAATGGCGGCAAATGCTCCGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGAGTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGCGGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGACTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTTTTGCGAAATCGACTGAGCTGGAAACGTTGGTGAAGGACGGCGGCGATGATGATAATGATGACGGCGATGAGATTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCATTGTCCCTTGGAATCCGTGAACCTGTTTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGGTGAAGACATGTGGGACGGTAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467345" ref_strand="+" ref_description="SGN-E467345 [cSTB-48-B21]">
      <seq>attctcgagatctctcaatcttatcgtgatctccggcagttttctctgcaatggcggcaaatgctccgtatttacttcagttaccggttcgatcgccggagtttcgagttttgattacaggaggatacgcgattttccggtcgcggatggagtttccgttctcgcgtaagaatcacgcgacttctctgagagctcggaaggtgagagtagttgagtgttttgcgaaatcgactgagctggaaacgctggtgaatgacggcggcgatgatgataatgatgacggcgatgagattcggggagatgatgataaggttgtaactcatggagactctgttagttcgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="40884" stop="39939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40584" g_stop="40239" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E467345" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40584" e_stop="40239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGA</genome_strand>
        <mrna_strand>ATTCTCGAGATCTCTCAA-TCTTATCGTGATCTCCGGCAGTTTTCTCTGCAATGGCGGCAAATGCTCCGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGAGTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGCGGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGACTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTTTTGCGAAATCGACTGAGCTGGAAACGCTGGTGAATGACGGCGGCGATGATGATAATGATGACGGCGATGAGATTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706894" ref_strand="+" ref_description="SGN-E706894 [FA31AH11]">
      <seq>aaataagagtaccttagagccaaccaaaaattcaaaaaacatctaaaaatttgcccaacatattaaatactaacttgtcttccaaaaatggcagcagcaacaacaaaccatgttgaacaacaacacgacgtcgttgtagttgtagttcctcttcctgcacaaggccatctccacgcagccatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtcggctgggatccactgaacaccacaaatctcaatttcattgattttccggtaacattcgaggtacctcctcctaatccagatgcatccatcaaattcccttctcaacttgttcctgctttcaattcttcattgcaactccgtgaaccagttacagatctggtaaataaattggcttcaacatcgagaagagttgttgtgattcatgattttctcacttcatgggttgttcaagatgtaccaaaaatacccaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttatatctgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatggttgtaattctcctgaactcgaagaatttgctaagaagcaaatagctgcaagagttcctggcgttggaaatattttcagtacatctcgagttatcgaaggattgtatattgatctaatggatagaatgatgggagcttccggttttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45634" stop="47031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45934" g_stop="46731" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="798" r_length="798" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E706894" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45934" e_stop="46731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAGAGTACCTTAGAGCCAACCAAAAATTCAAAAAACATCTAAAAATTTGCCCAACATATTAAATACTAACTTGTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAGCTTCAGGTTTTAAG</genome_strand>
        <mrna_strand>AAATAAGAGTACCTTAGAGCCAACCAAAAATTCAAAAAACATCTAAAAATTTGCCCAACATATTAAATACTAACTTGTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAGCTTCCGGTTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326384" ref_strand="+" ref_description="SGN-E326384 [cTOC-14-G5]">
      <seq>aaataagagtaccttagagccaaccaaaaattcaaaaaacatctaaaaatttgcccaacatattaaatactaacttgtcttccaaaaatggcagcagcaacaacaaaccatgttgaacaacaacacgacgtcgttgtagttgtagttcctcttcctgcacaaggccatctccacgcagccatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtcggctgggatccactgaacaccacaaatctcaatttcattgattttccggtaacattcgaggtacctcctcctaatccagatgcatccatcaaattcccttctcaacttgttcctgctttcaattcttcattgcaactccgtgaaccagttacagatctggtaaataaattggcttcaacatcgagaagagttgttgtgattcatgattttctcacttcatgggttgttcaagatgtaccaaaaataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45634" stop="46755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45934" g_stop="46455" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E326384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45934" e_stop="46455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAGAGTACCTTAGAGCCAACCAAAAATTCAAAAAACATCTAAAAATTTGCCCAACATATTAAATACTAACTTGTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCC</genome_strand>
        <mrna_strand>AAATAAGAGTACCTTAGAGCCAACCAAAAATTCAAAAAACATCTAAAAATTTGCCCAACATATTAAATACTAACTTGTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728907" ref_strand="+" ref_description="SGN-E728907 [LA19BD07]">
      <seq>agagtatccttaaagccaaccaaaaattcaaaaaacatctaaaaatttgcccaacatattaaatactaacttgtcttccaaaaatggcagcagcaacaacaaaccatgttgaacaacaacacgacgtcgttgtagttgtagttcctcttcctgcacaaggccatctccacgcagccatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtcggctgggatccactgaacaccacaaatctcaatttcattgattttccggtaacattcgaggtacctcctcctaatccagatgcatccatcaaattcccttctcaacttgttcctgctttcaattcttcattgcaactccgtgaaccagttacagatctggtaaataaattggcttcaacatcgagaagagttgttgtgattcatgattttctcacttcatgggttgttcaagatgtaccaaaaatacccaatgcagagtgttactgtttacacactgtttctgcttttcttgtgtaatcttatatctgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatggttgtaattctcctgaactcgaagaatttgctaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45639" stop="46920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45939" g_stop="46620" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E728907" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45939" e_stop="46620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTA-CCTTAGAGCCAACCAAAAATTCAAAAAACATCTAAAAATTTGCCCAACATATTAAATACTAACTTGTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAG</genome_strand>
        <mrna_strand>AGAGTATCCTTAAAGCCAACCAAAAATTCAAAAAACATCTAAAAATTTGCCCAACATATTAAATACTAACTTGTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTAATCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453104" ref_strand="+" ref_description="SGN-E453104 [cSTS-18-L6]">
      <seq>ctaacttctcttccaaaaatggcagcaacaacaacaaaccatgtagaacaacaacacgacgtcgttgtagtggtagttcctcttcctgcacaaggccatctccacgcagcaatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtctgctgggatccactgaaaaccacaaatctcaatttcatcgattttccggtaacattcgaggcacctcctcctaatccagatgcatctatcaaatttccttctcaacttgttcctgctttcaattcttcattgcaactgcgcgaaccagttacagatctggtaaataaattggcttcaacatcgaggagagttgttgtggttcatgattttctcacttcctgggttgttcaggatgtaccaaaaataactaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttacatttgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatgggtgtaattctcctgaactcgaagaatttgctaagaagcaaatagctgcaaggggttcctggtgttggaaatattttcagtacgtctcgagttatcgaaggattgtacattgatctaatggataaaatgatgggagctttcgggttttaagcattgggctcttggtccattcaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45703" stop="47059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46003" g_stop="46759" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E453104" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46003" e_stop="46759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACTTGTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAA-GAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAGC-TTCAGGTTTTAAGCATTGGGCTCTTGGTCCATTCAATCCTG</genome_strand>
        <mrna_strand>CTAACTTCTCTTCCAAAAATGGCAGCAACAACAACAAACCATGTAGAACAACAACACGACGTCGTTGTAGTGGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCAATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCTGCTGGGATCCACTGAAAACCACAAATCTCAATTTCATCGATTTTCCGGTAACATTCGAGGCACCTCCTCCTAATCCAGATGCATCTATCAAATTTCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTGCGCGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGGAGAGTTGTTGTGGTTCATGATTTTCTCACTTCCTGGGTTGTTCAGGATGTACCAAAAATAACTAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTACATTTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGGTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGGGGTTCCTGGTGTTGGAAATATTTTCAGTACGTCTCGAGTTATCGAAGGATTGTACATTGATCTAATGGATAAAATGATGGGAGCTTTCGGGTTTTAAGCATTGGGCTCTTGGTCCATTCAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450486" ref_strand="+" ref_description="SGN-E450486 [cSTS-9-B11]">
      <seq>cttctcttccaaaatggcagcaacaacaacaaaccatgtagaacaaaacacgacgtcgttgtagtggtagttcctcttcctgcacaaggccatctccacgcagcaatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtctgctgggatccactgaaaaccacaaatctcaatttcatcgattttccggtaacattcgaggcacctcctcctaatccagatgcatctatcaaatttccttctcaacttgttcctgctttcaattcttcattgcaactgcgcgaaccagttacagatctggtaaataaattggcttcaacatcgaggagagttgttgtggttcatgattttctcacttcctgggttgttcaggatgtaccaaaaataactaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttacatttgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatgggtgtaattctcctgaactcgaagaatttgctaagaagcaaatagctgcaaggggttctgggtgttggaaatattttcagtacgtctcgagttatcgaaggattgtacattgatctaatggataaaatgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45707" stop="47016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46007" g_stop="46716" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E450486" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46007" e_stop="46716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAA-GAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGA</genome_strand>
        <mrna_strand>CTTCTCTTCC-AAAATGGCAGCAACAACAACAAACCATGTAGAACAA-AACACGACGTCGTTGTAGTGGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCAATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCTGCTGGGATCCACTGAAAACCACAAATCTCAATTTCATCGATTTTCCGGTAACATTCGAGGCACCTCCTCCTAATCCAGATGCATCTATCAAATTTCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTGCGCGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGGAGAGTTGTTGTGGTTCATGATTTTCTCACTTCCTGGGTTGTTCAGGATGTACCAAAAATAACTAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTACATTTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGGTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGGGGTTCTGGGTGTTGGAAATATTTTCAGTACGTCTCGAGTTATCGAAGGATTGTACATTGATCTAATGGATAAAATGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450672" ref_strand="+" ref_description="SGN-E450672 [cSTS-10-G5]">
      <seq>ctcttccaaaaatggcagcaacaacaacaaaccatgtagaacaacaacacgacgtcgttgtagtggtagttcctcttcctgcacaaggccatctccacgcagcaatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtctgctgggatccactgaaaaccacaaatctcaatttcatcgattttccggtaacattcgaggcacctcctcctaatccagatgcatctatcaaatttccttctcaacttgttcctgctttcaattcttcattgcaactgcgcgaaccagttacagatctggtaaataaattggcttcaacatcgaggagagttgttgtagttcatgattttctcacttcctgggttgttcaggatgtaccaaaaataactaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttacatttgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45711" stop="46883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46010" g_stop="46583" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E450672" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46010" e_stop="46583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGG</genome_strand>
        <mrna_strand>CTCTTCCAAAAATGGCAGCAACAACAACAAACCATGTAGAACAACAACACGACGTCGTTGTAGTGGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCAATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCTGCTGGGATCCACTGAAAACCACAAATCTCAATTTCATCGATTTTCCGGTAACATTCGAGGCACCTCCTCCTAATCCAGATGCATCTATCAAATTTCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTGCGCGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGGAGAGTTGTTGTAGTTCATGATTTTCTCACTTCCTGGGTTGTTCAGGATGTACCAAAAATAACTAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTACATTTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477126" ref_strand="+" ref_description="SGN-E477126 [cSTB-47-E14]">
      <seq>caacaacaaaccatgtagaacaacaacacgacgtcgttgtagtggtagttcctcttcctgcacaaggccatctccacgcagcaatcgaactctcccaccgcatctgctgcgccaacattcctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtctgctgggatccactgaaaaccacaaatctcaatttcatcgattttccggtaacattcgaggcacctcctcctaatccagatgcatctatcaaatttccttctcaacttgttcctgctttcaattcttcattgcaactgcgcgaaccagttacagatctggtaaataaattggcttcaacatcgaggagagttgttgtggttcatgattttctcacttcctgggttgttcaggatgtaccaaaaataactaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttacatttgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatgggtgtaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45731" stop="46892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46031" g_stop="46592" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E477126" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46031" e_stop="46592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTC</genome_strand>
        <mrna_strand>CAACAACAAACCATGTAGAACAACAACACGACGTCGTTGTAGTGGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCAATCGAACTCTCCCACCGCATCTGCTGCGCCAACATTCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCTGCTGGGATCCACTGAAAACCACAAATCTCAATTTCATCGATTTTCCGGTAACATTCGAGGCACCTCCTCCTAATCCAGATGCATCTATCAAATTTCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTGCGCGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGGAGAGTTGTTGTGGTTCATGATTTTCTCACTTCCTGGGTTGTTCAGGATGTACCAAAAATAACTAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTACATTTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGGTGTAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454175" ref_strand="+" ref_description="SGN-E454175 [cSTS-22-K8]">
      <seq>caacaacaaaccatgtagaacaacaacacgacgtcgttgtagtggtagttcctcttcctgcacaaggccatctccacgcagcaatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtctgctgggatccactgaaaaccacaaatctcaatttcatcgattttccggtaacattcgaggcacctcctcctaatccagatgcatctatcaaatttccttctcaacttgttcctgctttcaattcttcattgcaactgcgcgaaccagttacagatctggtaaataaattggcttcaacatcgaggagagttgttgtggttcatgattttctcacttcctgggttgttcaggatgtaccaaaaataactaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttacatttgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45731" stop="46879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46031" g_stop="46579" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E454175" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46031" e_stop="46579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCG</genome_strand>
        <mrna_strand>CAACAACAAACCATGTAGAACAACAACACGACGTCGTTGTAGTGGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCAATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCTGCTGGGATCCACTGAAAACCACAAATCTCAATTTCATCGATTTTCCGGTAACATTCGAGGCACCTCCTCCTAATCCAGATGCATCTATCAAATTTCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTGCGCGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGGAGAGTTGTTGTGGTTCATGATTTTCTCACTTCCTGGGTTGTTCAGGATGTACCAAAAATAACTAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTACATTTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329094" ref_strand="+" ref_description="SGN-E329094 [cTOC-24-P9]">
      <seq>aacaacaaaccatgttgaacaacaacacgacgtcgttgtagttgtagttcctcttcctgcacaaggccatctccacgcagccatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtcggctgggatccactgaacaccacaaatctcaatttcattgattttccggtaacattcgaggtacctcctcctaatccagatgcatccatcaaattcccttctcaacttgttcctgctttcaattcttcattgcaactccgtgaaccagttacagatctggtaaataaattggcttcaacatcgagaagagttgttgtgattcatgattttctcacttcatgggttgttcaagatgtaccaaaaatacccaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttatatctgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatggttgtaattctcctgaactcgaagaatttgctaagaagcaaatagctgcaagagttcctggcgttggaaatattttcagtacatctcgagttatcgaaggattgtatattgatctaatggatagaatgatgggagcttcaggttttaagcattgggctcttggtccatcaatcctgtaaatctggaatttgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45732" stop="47079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46032" g_stop="46779" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E329094" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46032" e_stop="46779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAGCTTCAGGTTTTAAGCATTGGGCTCTTGGTCCATTCAATCCTGTAAATCTGGAATTTGAGAAA</genome_strand>
        <mrna_strand>AACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAGCTTCAGGTTTTAAGCATTGGGCTCTTGGTCCA-TCAATCCTGTAAATCTGGAATTTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328063" ref_strand="+" ref_description="SGN-E328063 [cTOC-22-O2]">
      <seq>aacaacaaaccatgttgaacaacaacacgacgtcgttgtagttgtagttcctcttcctgcacaaggccatctccacgcagccatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtcggctgggatccactgaacaccacaaatctcaatttcattgattttccggtaacattcgaggtacctcctcctaatccagatgcatccatcaaattcccttctcaacttgttcctgctttcaattcttcattgcaactccgtgaaccagttacagatctggtaaataaattggcttcaacatcgagaagagttgttgtgattcatgattttctcacttcatgggttgttcaagatgtaccaaaaatacccaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttatatctgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatggttgtaattctcctgaactcgaagaattttgctagaagcaaatagctggcagagttcctggcgttggaaatattttcagtacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45732" stop="46968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46032" g_stop="46668" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E328063" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46032" e_stop="46668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCT</genome_strand>
        <mrna_strand>AACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTTGCTAGAAGCAAATAGCTGGCAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455780" ref_strand="+" ref_description="SGN-E455780 [cSTS-27-E22]">
      <seq>aaccatgtagaacaacaacacgacgtcgttgtagtggtagttcctcttcctgcacaaggccatctccacgcagcaatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtctgctgggatccactgaaaaccacaaatctcaatttcatcgattttccggtaacattcgaggcacctcctcctaatccagatgcatctatcaaatttccttctcaacttgttcctgctttcaattcttcattgcaactgcgcgaaccagttacagatctggtaaataaattggcttcaacatcgaggagagttgttgtggttcatgattttctcacttcctgggttgttcaggatgtaccaaaaataactaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttacatttgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatgggtgtaattctcctgaactcgaagaatttgctaagaagcaaatagctgcaagggttccctggtgttggaaatattttcagtacgtctcgagttatcgaaggaattgtacattgatctaatggataaaatgatgggagctttcgggttttaagcattggggctcttggtccattcaatcctgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45739" stop="47062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46039" g_stop="46762" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E455780" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46039" e_stop="46762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTT-CCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGG-ATTGTATATTGATCTAATGGATAGAATGATGGGAGC-TTCAGGTTTTAAGCATT-GGGCTCTTGGTCCATTCAATCCTGTAA</genome_strand>
        <mrna_strand>AACCATGTAGAACAACAACACGACGTCGTTGTAGTGGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCAATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCTGCTGGGATCCACTGAAAACCACAAATCTCAATTTCATCGATTTTCCGGTAACATTCGAGGCACCTCCTCCTAATCCAGATGCATCTATCAAATTTCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTGCGCGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGGAGAGTTGTTGTGGTTCATGATTTTCTCACTTCCTGGGTTGTTCAGGATGTACCAAAAATAACTAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTACATTTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGGTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGGGTTCCCTGGTGTTGGAAATATTTTCAGTACGTCTCGAGTTATCGAAGGAATTGTACATTGATCTAATGGATAAAATGATGGGAGCTTTCGGGTTTTAAGCATTGGGGCTCTTGGTCCATTCAATCCTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469992" ref_strand="+" ref_description="SGN-E469992 [cSTB-16-K13]">
      <seq>agaacaacaacacgattcgcgtagcggtagttcctcttcctgcacaaggccatctccacgcagcaatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtctgctgggatccactgaaaaccacaaatctcaatttcatcgattttccggtaacattcgaggcacctcctcctaatccagatgcatctatcaaatttccttctcaacttgttcctgctttcaattcttcattgcaactgcgcgaaccagttacagatctggtaaataaatcggcttcaacatcgaggagagttgttgcggttcatgattttctcacttcctgggttgttcaggatgtaccaaaaataactaatgcagagtgttactgtttacacactgattctgcttttcttgtgttttcttacatttgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatgggtgtaattctcctgaactcgaagaatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45769" stop="46913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46047" g_stop="46613" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E469992" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46047" e_stop="46613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGC</genome_strand>
        <mrna_strand>AGAACAACAACACGA-TTCG-CGTAGCGGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCAATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCTGCTGGGATCCACTGAAAACCACAAATCTCAATTTCATCGATTTTCCGGTAACATTCGAGGCACCTCCTCCTAATCCAGATGCATCTATCAAATTTCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTGCGCGAACCAGTTACAGATCTGGTAAATAAATCGGCTTCAACATCGAGGAGAGTTGTTGCGGTTCATGATTTTCTCACTTCCTGGGTTGTTCAGGATGTACCAAAAATAACTAATGCAGAGTGTTACTGTTTACACACTGATTCTGCTTTTCTTGTGTTTTCTTACATTTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGGTGTAATTCTCCTGAACTCGAAGAATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451049" ref_strand="+" ref_description="SGN-E451049 [cSTS-11-G18]">
      <seq>gaacaacaacacgacgtcgttgtagtggtagttcctcttcctgcacaaggccatctccacgcagcaatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtctgctgggatccactgaaaaccacaaatctcaatttcatcgattttccggtaacattcgaggcacctcctcctaatccagatgcatctatcaaatttccttctcaacttgttcctgctttcaattcttcattgcaactgcgcgaaccagttacagatctggtaaataaattggcttcaacatcgaggagagttgttgtggttcatgattttctcacttcctgggttgttcaggatgtaccaaaaataactaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttacatttgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatgggtgtaattctcctgaactcgaagaatttgctaagaagcaaatagctgcaagggttcctggtgttggaaatattttcagtacgtctcgagttatcgaaggattgtacattgatctaatggataaaatgatgggagcttcgggttttaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45748" stop="47033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46048" g_stop="46733" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E451049" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46048" e_stop="46733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAGCTTCAGGTTTTAAGCA</genome_strand>
        <mrna_strand>GAACAACAACACGACGTCGTTGTAGTGGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCAATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCTGCTGGGATCCACTGAAAACCACAAATCTCAATTTCATCGATTTTCCGGTAACATTCGAGGCACCTCCTCCTAATCCAGATGCATCTATCAAATTTCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTGCGCGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGGAGAGTTGTTGTGGTTCATGATTTTCTCACTTCCTGGGTTGTTCAGGATGTACCAAAAATAACTAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTACATTTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGGTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGGGTTCCTGGTGTTGGAAATATTTTCAGTACGTCTCGAGTTATCGAAGGATTGTACATTGATCTAATGGATAAAATGATGGGAGCTTCGGGTTTTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326759" ref_strand="+" ref_description="SGN-E326759 [cTOC-25-O19]">
      <seq>aacaacaacacgacgtcgttgtagttgtagttcctcttcctgcacaaggccatctccacgcagccatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtcggctgggatccactgaacaccacaaatctcaatttcattgattttccggtaacattcgaggtacctcctcctaatccagatgcatccatcaaattcccttctcaacttgttcctgctttcaattcttcattgcaactccgtgaaccagttacagatctggtaaataaattggcttcaacatcgagaagagttgttgtgattcatgattttctcacttcatgggttgttcaagatgtaccaaaaatacccaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttatatctgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatggttgtaattctcctgaactcgaagaatttgctaagaagcaaatagctgcaagagttcctggcgttggaaatattttcagtacatctcgagttatcgaaggattgtatattgatctaatggatagaatgatgggagcttcaggttttaagcattgggctcttggtccattcaatcctgtaaatctggaatttgagaaaaaggaaaacgccattattcacttgagtggcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45749" stop="47113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46049" g_stop="46813" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E326759" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46049" e_stop="46813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAGCTTCAGGTTTTAAGCATTGGGCTCTTGGTCCATTCAATCCTGTAAATCTGGAATTTGAGAAAAAGGAAAACCGCCATTATTCACTTGAGTGGCTTG</genome_strand>
        <mrna_strand>AACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAGCTTCAGGTTTTAAGCATTGGGCTCTTGGTCCATTCAATCCTGTAAATCTGGAATTTGAGAAAAAGGAAAA-CGCCATTATTCACTTGAGTGGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415397" ref_strand="+" ref_description="SGN-E415397 [STM-21-C6]">
      <seq>cgacgtcgttgtagttgtggttcctcttcctgcacaaggccatctccacgcagccatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcaatcgcgtgctgtcggctgggatccactgaaaacgacaaatctcaatttcatcgattttccggtaacattcgagggacctcctcctaatccagatgcctccatcaaatttccttctcaacttgttcctgctttcaattcttcattgcaactgcgtgaaccacttacagatctggtaaataaattggcttcaacatcgaggagagatgttgtggttcatgatattctcacttcctgggttgtgcacgatgtaccacaaataactaatgcacagtgtgactgtgtacacactgtgtctgctcttcttgtgtgttcttacatttgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttatacaacttccgtctctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45759" stop="46879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46059" g_stop="46579" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E415397" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46059" e_stop="46579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCG</genome_strand>
        <mrna_strand>CGACGTCGTTGTAGTTGTGGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAATCGCGTGCTGTCGGCTGGGATCCACTGAAAACGACAAATCTCAATTTCATCGATTTTCCGGTAACATTCGAGGGACCTCCTCCTAATCCAGATGCCTCCATCAAATTTCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTGCGTGAACCACTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGGAGAGATGTTGTGGTTCATGATATTCTCACTTCCTGGGTTGTGCACGATGTACCACAAATAACTAATGCACAGTGTGACTGTGTACACACTGTGTCTGCTCTTCTTGTGTGTTCTTACATTTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTATACAACTTCCGTCTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436938" ref_strand="+" ref_description="SGN-E436938 [cSTA-1-L13]">
      <seq>cgacgtcgttgtagttgtggttcctcttcctgcacaaggccatctccacgcagccatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtcggctgggatccactgaaaacgacaaatctcaatttcatcgattttccggtaacattcgaggtacctcctcctaatccagatgcatccatcaaatttccttctcaacttgttcctgctttcaattcttcattgcaactgcgtgaaccagttacagatctggtaaataaattggcttcaacatcgaggagagttgttgtggttcatgattttctcacttcctgggttgttcaagatgtaccaaaaataactaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttacatttgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45759" stop="46819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46059" g_stop="46519" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E436938" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46059" e_stop="46519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATG</genome_strand>
        <mrna_strand>CGACGTCGTTGTAGTTGTGGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAAAACGACAAATCTCAATTTCATCGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTTCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTGCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGGAGAGTTGTTGTGGTTCATGATTTTCTCACTTCCTGGGTTGTTCAAGATGTACCAAAAATAACTAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTACATTTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341280" ref_strand="+" ref_description="SGN-E341280 [cTOE-22-F5]">
      <seq>tttactacgtcagcaccgccgttcacgtccgtcaagctcagtcgcgtgctgtgggctgggatccactgaacaccacaaatctcaatttcattgattttccggtaacattcgaggtacctcctcctaatccagatgcatccatcaaattcccttctcaacttgttcctgctttcaattcttcattgcaactccgtgaaccagttacagatctggtaaataaattggcttcaacatcgagaagagttgttgtgattcatgattttctcacttcatgggttgttcaagatgtaccaaaaatacccaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttatatctgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatggttgtaattctcctgaactcgaagaatttgctaagaagcaaatagctgcaagagttcctggcgttggaaatattttcagtacatctcgagttatcgaaggattgtatattgatctaatggatagaatgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45854" stop="47017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46154" g_stop="46717" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E341280" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46154" e_stop="46717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAG</genome_strand>
        <mrna_strand>TTTACTACGTCAGCACCGCCGTTCACGTCCGTCAAGCTCAGTCGCGTGCTGTGGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451216" ref_strand="+" ref_description="SGN-E451216 [cSTS-12-G23]">
      <seq>ctgctttcaattcttcattgcaactgcgcgaaccagttacagatctggtaaataaattggcttcaacatcgaggagagttgttgtggttcatgattttctcacttcctgggttgttcaggatgtaccaaaaataactaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttacatttgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatgggtgtaattctcctgaactcgaagaatttgctaagaagcaaatagctgcaagggttcctggtgttggaaatattttcagtacgtctcgagttatcgaaggattgtacattgatctaatggataaaatgatgggagcttcgggttttaagcattgggctcttggtccattcaatcctgtaaatctggagtttgacaagaaggaaacccgccattattcacttgagtggctcgacaaacaaccagctagctcggtgattttcgtttcgtttggatcaacaacttccttatctgaagacgaaatcagagagctagctattgggctggaagcaagtcaacagagatttatctgggtcctcagggacgcagataaaggagatatattctccgggtgatgttcgaaaatgtcaattgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="46019" stop="47296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46319" g_stop="46996" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E451216" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46319" e_stop="46996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAGCTTCAGGTTTTAAGCATTGGGCTCTTGGTCCATTCAATCCTGTAAATCTGGAATTTGAGAAAAAGGAAAACCGCCATTATTCACTTGAGTGGCTTGATAAACAACCAGCTAGCTCGGTGATTTTCGTTTCCTTTGGATCAACGACTTCGTTATCCGAAGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTTCTGAGGGACGCAGATAAAGGAGATATATTCTCC-GGTGAAGTTCGAAAATGTCAATTGCCTG</genome_strand>
        <mrna_strand>CTGCTTTCAATTCTTCATTGCAACTGCGCGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGGAGAGTTGTTGTGGTTCATGATTTTCTCACTTCCTGGGTTGTTCAGGATGTACCAAAAATAACTAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTACATTTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGGTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGGGTTCCTGGTGTTGGAAATATTTTCAGTACGTCTCGAGTTATCGAAGGATTGTACATTGATCTAATGGATAAAATGATGGGAGCTTCGGGTTTTAAGCATTGGGCTCTTGGTCCATTCAATCCTGTAAATCTGGAGTTTGACAAGAAGGAAACCCGCCATTATTCACTTGAGTGGCTCGACAAACAACCAGCTAGCTCGGTGATTTTCGTTTCGTTTGGATCAACAACTTCCTTATCTGAAGACGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTCAGGGACGCAGATAAAGGAGATATATTCTCCGGGTGATGTTCGAAAATGTCAATTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452312" ref_strand="+" ref_description="SGN-E452312 [cSTS-16-K8]">
      <seq>tcaggatgtaccaaaaataactaatgcagagtgttactgtttacacactgttgctgcttttcttgtgttttcttacatttgggatgctgctagaccacctgtacctactgaagctgaagctgtacttaaacaacttccgtctctcgatgggtgtaattctcctgaactcgaagaatttgctaagaagcaaatagctgcaagggttcctggtgttggaaatattttcaggacgtctcgagttatcgaaggattgtacattgatctaatggataaaatgatgggagcttcgggttttaagcattgggctcttggtccattcaatcctgtaaatctggagtttgacaagaaggaaacccgccattattgcacttgagtggctcgacaaacagccagctagctcggtgattttcgtttcgtttggatcaacaacttccttatctgaagacgaaatcagagagctagctattgtgctggaagcaagtcaacagagatttatctgggtcctcatggacgcagataaaggagatatattctccggcgatgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="46134" stop="47279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46434" g_stop="46979" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E452312" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46434" e_stop="46979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAGCTTCAGGTTTTAAGCATTGGGCTCTTGGTCCATTCAATCCTGTAAATCTGGAATTTGAGAAAAAGGAAAACCGCCATTATT-CACTTGAGTGGCTTGATAAACAACCAGCTAGCTCGGTGATTTTCGTTTCCTTTGGATCAACGACTTCGTTATCCGAAGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTTCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCG</genome_strand>
        <mrna_strand>TCAGGATGTACCAAAAATAACTAATGCAGAGTGTTACTGTTTACACACTGTTGCTGCTTTTCTTGTGTTTTCTTACATTTGGGATGCTGCTAGACCACCTGTACCTACTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGGTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGGGTTCCTGGTGTTGGAAATATTTTCAGGACGTCTCGAGTTATCGAAGGATTGTACATTGATCTAATGGATAAAATGATGGGAGCTTCGGGTTTTAAGCATTGGGCTCTTGGTCCATTCAATCCTGTAAATCTGGAGTTTGACAAGAAGGAAACCCGCCATTATTGCACTTGAGTGGCTCGACAAACAGCCAGCTAGCTCGGTGATTTTCGTTTCGTTTGGATCAACAACTTCCTTATCTGAAGACGAAATCAGAGAGCTAGCTATTGTGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTCATGGACGCAGATAAAGGAGATATATTCTCCGGCGATGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611455" ref_strand="+" ref_description="SGN-E611455 [61207]">
      <seq>attttttactcgagttcaaagagggcaaacatacttgatagataagagttattcaaatacttatttcgatacaggatgaaaggttaaagtccgcataaactagcacgaacatcaccaatagtaaacgaacaaaaaaaatctatctagtgatgtgggaaacaaaagatttcatttccttctgagttaacccaccctccatcaccgataacttcactgcttccttgatcgctgtagcatttcgttttatctcctctccctccggagacgctattaacgttctcacaactttttcaacagtttctgctgggatcacttcatttctttgctcccattttctcacccatatcccggttttcagtccttcagttatgaacagagcatttctaggctgatcagaatgcattggccacgccgctattggaactcccattgtaatactctccatacaagaattccacccgcaatgactcatgaatccacccgtagacgggtgtcctaaaatttccaattgtggtacccaatctctcattacaagtcctctttccgataccctcttctcgtatccttcaggcaattgacattttcgaacttcacctgagaatatatctcctttatctgcgtccctgaggacccagataaatctctgttgacttgcttccagcccaatagctagctctctgatttcgtcttcagtataagcgaagtttgtttgatccaagagcgaaacgaagaatcaccgagcctagctggttgtttgtcgagccactcaangtgaataatggcgggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="47828" stop="46561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47566" g_stop="46783" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E611455" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47566" e_stop="46783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATCACTCGAGTTTAAAAAGGGCAAGCATACTCGATAGATTGATAGAGTTATTCAAAATATTTATTTCGACACAGGATCAAAGGTTAAAGTGCGCATAAACTAGCACGAACATCACCAATATTAAACG-GGAAAAAAAATCTATCTAGTAATGTGGGCAACAAAAGATTTCATTTCCTGCTGCGTTACCCCACCCTCCATTACCGATAATTTCACTGCTTCCTTGATCGCTGTAGCATTTCGTTTCATCTCCGCTCCCTCCGGAGAGGCGATTAACGTTCGTACAACTTTCTCAACAGTCTCTGCTGGGATCACTTCGTTTCGTTGCTCCCATTTTCTCACCCATATCCCCGTTTTCAGTCCTTCAGTTATGAACAACGCATTTCTAGGCTGATCAGAATGCATTGGCCATGCCGCGATTGGAACTCCCATTGTAATACTCTCCATACAAGAATTCCACCCGCAATGACTCATGAATCCACCCGTAGACGGGTGACCTAAAATTTCCAATTGTGGTGCCCAATCTCTCATTACAAGTCCTCTTTCCGATACCCTCTTCTCATATCCTTCAGGCAATTGACATTTTCGAACTTCACCGGAGAATATATCTCCTTTATCTGCGTCCCTCAGAACCCAGATAAATCTCTGTTGACTTGCTTCCAGCCCAATAGCTAGCTCTCTGATTTCATCTTC-GGATAA-CGAAG-TCGTT-GATCCAA-AG-GAAACGAA-AATCACCGAG-CTAGCTGGTTGTTTATCAAGCCACTCAA-GTGAATAATGGCGGTTTTC</genome_strand>
        <mrna_strand>ATTTTTTACTCGAGTTCAAAGAGGGCAAACATACTTGATAGA-T-A-AGAGTTATTC-AAATACTTATTTCGATACAGGATGAAAGGTTAAAGTCCGCATAAACTAGCACGAACATCACCAATAGTAAACGAACAAAAAAAATCTATCTAGTGATGTGGGAAACAAAAGATTTCATTTCCTTCTGAGTTAACCCACCCTCCATCACCGATAACTTCACTGCTTCCTTGATCGCTGTAGCATTTCGTTTTATCTCCTCTCCCTCCGGAGACGCTATTAACGTTCTCACAACTTTTTCAACAGTTTCTGCTGGGATCACTTCATTTCTTTGCTCCCATTTTCTCACCCATATCCCGGTTTTCAGTCCTTCAGTTATGAACAGAGCATTTCTAGGCTGATCAGAATGCATTGGCCACGCCGCTATTGGAACTCCCATTGTAATACTCTCCATACAAGAATTCCACCCGCAATGACTCATGAATCCACCCGTAGACGGGTGTCCTAAAATTTCCAATTGTGGTACCCAATCTCTCATTACAAGTCCTCTTTCCGATACCCTCTTCTCGTATCCTTCAGGCAATTGACATTTTCGAACTTCACCTGAGAATATATCTCCTTTATCTGCGTCCCTGAGGACCCAGATAAATCTCTGTTGACTTGCTTCCAGCCCAATAGCTAGCTCTCTGATTTCGTCTTCAGTATAAGCGAAGTTTGTTTGATCCAAGAGCGAAACGAAGAATCACCGAGCCTAGCTGGTTGTTTGTCGAGCCACTCAANGTGAATAATGGCGGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456748" ref_strand="+" ref_description="SGN-E456748 [cSTS-30-M14]">
      <seq>agctagctcggtgattttcgtttcgtttggatcaacaacttccttatctgaagacgaaatcagagagctagctattgggctggaagcaagtcaacagagatttatctgggtcctcagggacgcagataaaggagatatattctccggtgatgttcgaaaatgtcaattgcctgaaggatatgagaagagggtatcggaaagaggacttgtaatgagagattgggcaccacaattggaaattttaggacacccgtctacgggtggattcatgagtcattgcgggtggaattcttgtatggagagtattacaatgggagttccaatagcagcgtggccaatgcattctgatcagcctagaaatgctctgttcataactgaaggactgaaaactgggatatgggtgagaaaatgggagcaaagaaatgaagtgatcccagcagaaactgttgcaaaagttgtaagaacgttaatagcctctccggagggagaggagataaaacgaaatgctacagcgatcaaggaagcagtgaagttatcggtgatggagggtgggttaactcagaaggaaatgaaatcttttgtttcccacatcactagatagattttttttgttcgtttactattggtgatgttcgtgctagtttatgcggactttaacctttcatcctgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="46524" stop="47795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46824" g_stop="47495" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E456748" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46824" e_stop="47495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAGCTCGGTGATTTTCGTTTCCTTTGGATCAACGACTTCGTTATCCGAAGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTTCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATGTCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTTTAGGTCACCCGTCTACGGGTGGATTCATGAGTCATTGCGGGTGGAATTCTTGTATGGAGAGTATTACAATGGGAGTTCCAATCGCGGCATGGCCAATGCATTCTGATCAGCCTAGAAATGCGTTGTTCATAACTGAAGGACTGAAAACGGGGATATGGGTGAGAAAATGGGAGCAACGAAACGAAGTGATCCCAGCAGAGACTGTTGAGAAAGTTGTACGAACGTTAATCGCCTCTCCGGAGGGAGCGGAGATGAAACGAAATGCTACAGCGATCAAGGAAGCAGTGAAATTATCGGTAATGGAGGGTGGGGTAACGCAGCAGGAAATGAAATCTTTTGTTGCCCACATTACTAGATAGATTTTTTTT-CCCGTTTAATATTGGTGATGTTCGTGCTAGTTTATGCGCACTTTAACCTTTGATCCTGTGTC</genome_strand>
        <mrna_strand>AGCTAGCTCGGTGATTTTCGTTTCGTTTGGATCAACAACTTCCTTATCTGAAGACGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTCAGGGACGCAGATAAAGGAGATATATTCTCCGGTGATGTTCGAAAATGTCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTTTAGGACACCCGTCTACGGGTGGATTCATGAGTCATTGCGGGTGGAATTCTTGTATGGAGAGTATTACAATGGGAGTTCCAATAGCAGCGTGGCCAATGCATTCTGATCAGCCTAGAAATGCTCTGTTCATAACTGAAGGACTGAAAACTGGGATATGGGTGAGAAAATGGGAGCAAAGAAATGAAGTGATCCCAGCAGAAACTGTTGCAAAAGTTGTAAGAACGTTAATAGCCTCTCCGGAGGGAGAGGAGATAAAACGAAATGCTACAGCGATCAAGGAAGCAGTGAAGTTATCGGTGATGGAGGGTGGGTTAACTCAGAAGGAAATGAAATCTTTTGTTTCCCACATCACTAGATAGATTTTTTTTGTTCGTTTACTATTGGTGATGTTCGTGCTAGTTTATGCGGACTTTAACCTTTCATCCTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450228" ref_strand="+" ref_description="SGN-E450228 [cSTS-8-D8]">
      <seq>agctagctcggtgattttcgtttcgtttggatcaacaacttccttatctgaagacgaaatcagagagctagctattgggctggaagcaagtcaacagagatttatctgggtcctcagggacgcagataaaggagatatattctccggtgatgttcgaaaatgtcaattgcctgaaggatatgagaagagggtatcggaaagaggacttgtaatgagagattgggcaccacaattggaaattttacgacacccgtctaccggtggattcatgagtcattgcgggtggaattcttgtatggagagtattacaatgggagttccaatagcagcgtggccaatgcattctgatcagcctagaaatgctctgttcataactgaaagactgaaaactgggatatgggtgagaaaatgggagcaaagaaatgaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="46524" stop="47554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46824" g_stop="47254" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E450228" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46824" e_stop="47254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAGCTCGGTGATTTTCGTTTCCTTTGGATCAACGACTTCGTTATCCGAAGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTTCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATGTCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTTTAGGTCACCCGTCTACGGGTGGATTCATGAGTCATTGCGGGTGGAATTCTTGTATGGAGAGTATTACAATGGGAGTTCCAATCGCGGCATGGCCAATGCATTCTGATCAGCCTAGAAATGCGTTGTTCATAACTGAAGGACTGAAAACGGGGATATGGGTGAGAAAATGGGAGCAACGAAACGAAGTGA</genome_strand>
        <mrna_strand>AGCTAGCTCGGTGATTTTCGTTTCGTTTGGATCAACAACTTCCTTATCTGAAGACGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTCAGGGACGCAGATAAAGGAGATATATTCTCCGGTGATGTTCGAAAATGTCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTTTACGACACCCGTCTACCGGTGGATTCATGAGTCATTGCGGGTGGAATTCTTGTATGGAGAGTATTACAATGGGAGTTCCAATAGCAGCGTGGCCAATGCATTCTGATCAGCCTAGAAATGCTCTGTTCATAACTGAAAGACTGAAAACTGGGATATGGGTGAGAAAATGGGAGCAAAGAAATGAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415398" ref_strand="-" ref_description="SGN-E415398 [STM-21-C6]">
      <seq>agtattacaatgggagttccaatagcagcgtggccaatgcattctgatcagcctagaaatgctctgttcataactgaaggactgaaaaccgggatatgggtgagaaaatgggagcaaagaaatgaagtgatcccagcagaaactgttgaaaaagttgtgagaacgttaatagcatctccggagggagaggagataaaacgaaatgctacagcgatcaaggaagcagtgaagttatcggtgatggagggtggggtaactcagaaggaaatgaaatcttttgttgcccacattattagatagattttttttgttcgtttaatattggtgatgttcgtgctagttcatgcggactttaacctttcatcctgtatcgaaataagtatttgaataactcttatctatcaangtatgtttgccctcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="46825" stop="47828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47125" g_stop="47532" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="433"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E415398" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415398" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47125" e_stop="47532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTACAATGGGAGTTCCAATCGCGGCATGGCCAATGCATTCTGATCAGCCTAGAAATGCGTTGTTCATAACTGAAGGACTGAAAACGGGGATATGGGTGAGAAAATGGGAGCAACGAAACGAAGTGATCCCAGCAGAGACTGTTGAGAAAGTTGTACGAACGTTAATCGCCTCTCCGGAGGGAGCGGAGATGAAACGAAATGCTACAGCGATCAAGGAAGCAGTGAAATTATCGGTAATGGAGGGTGGGGTAACGCAGCAGGAAATGAAATCTTTTGTTGCCCACATTACTAGATAGATTTTTTTT-CCCGTTTAATATTGGTGATGTTCGTGCTAGTTTATGCGCACTTTAACCTTTGATCCTGTGTCGAAATAAATATTTTGAATAACTCTATCAATCTATCGA</genome_strand>
        <mrna_strand>AGTATTACAATGGGAGTTCCAATAGCAGCGTGGCCAATGCATTCTGATCAGCCTAGAAATGCTCTGTTCATAACTGAAGGACTGAAAACCGGGATATGGGTGAGAAAATGGGAGCAAAGAAATGAAGTGATCCCAGCAGAAACTGTTGAAAAAGTTGTGAGAACGTTAATAGCATCTCCGGAGGGAGAGGAGATAAAACGAAATGCTACAGCGATCAAGGAAGCAGTGAAGTTATCGGTGATGGAGGGTGGGGTAACTCAGAAGGAAATGAAATCTTTTGTTGCCCACATTATTAGATAGATTTTTTTTGTTCGTTTAATATTGGTGATGTTCGTGCTAGTTCATGCGGACTTTAACCTTTCATCCTGTATCGAAATAAGTA-TTTGAATAACTCT-T--ATCTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311803" ref_strand="+" ref_description="SGN-E311803 [cLEZ-9-J7]">
      <seq>aaaattttgcccaaacatttcttactcatccctcccaaaaaatggcatcaacaacaaaccatgtaaatcaacaacacgacgttgttgtagttatagttcctcttcctgcacaaggccatctccacgcagccctcgaactctcccgccgcctctcctccgccaacatccccgtttactacgtcagcaccaccgctcacgtccggcaagctcactcccgtgctgccggatgggacccattaaacaccccaaatctcaatttcattgattttcctgttacattcaatgcccctcctacgaacccagatgcatccatcaagttcccttcacaactagtccctgctttcaactcttcaatgcaactacgtaccccaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50205" stop="51180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50505" g_stop="50880" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E311803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50505" e_stop="50880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTTGCCCAAACATTTCTTACTCATCCCTCCCAAAAAATGGCATCAACAACAAACCATGTAAATCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTAC</genome_strand>
        <mrna_strand>AAAATTTTGCCCAAACATTTCTTACTCATCCCTCCCAAAAAATGGCATCAACAACAAACCATGTAAATCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311804" ref_strand="+" ref_description="SGN-E311804 [cLEZ-9-J9]">
      <seq>aaaattttgcccaaacatttcttactcatccctcccaaaaaatggcatcaacaacaaaccatgtaaatcaacaacacgacgttgttgtagttatagttcctcttcctgcacaaggccatctccacgcagccctcgaactctcccgccgcctctcctccgccaacatccccgtttactacgtcagcaccaccgctcacgtccggcaagctcactcccgtgctgccggatgggacccattaaacaccccaaatctcaatttcattgattttcctgttacattcaatgcccctcctacgaacccagatgcatccatcaagttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50205" stop="51127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50505" g_stop="50827" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E311804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50505" e_stop="50827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTTGCCCAAACATTTCTTACTCATCCCTCCCAAAAAATGGCATCAACAACAAACCATGTAAATCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCT</genome_strand>
        <mrna_strand>AAAATTTTGCCCAAACATTTCTTACTCATCCCTCCCAAAAAATGGCATCAACAACAAACCATGTAAATCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266837" ref_strand="+" ref_description="SGN-E266837 [cLEI-7-N7]">
      <seq>aacaaaccatgttaatcaacaacacgacgttgttgtagttatagttcctcttcctgcacaaggccatctccacgcagccctcgaactctcccgccgcctctcctacgccaacatccccgtttactacgtcagcaccaccgctcacgtccggcaagctcactcccgtgctgccggatgggacccattaaacaccccaaatctcaatttcattgattttcctgttacattcaatgcccctcctacgaacccagatgcatgcatcaagttcccttcacaactagtccctgctttcaactcttcaatgcaactacgtaccccaattacagatctagtaaataaattgtgttcaatatcgaggagagtgatagttattcatgattttctcacgtcttgggtggttcaagatgtacccaaaatattcaatacagagtgttactgtttacacactgtttctgcttatcttatgtttacatatacttgggaggctgctagaccacctgtacctcctgaagctgaagttgtactcaaacaacttccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50257" stop="51396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50557" g_stop="51096" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E266837" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50557" e_stop="51096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACCATGTAAATCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTC</genome_strand>
        <mrna_strand>AACAAACCATGTTAATCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTACGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATGCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGTGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATTCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285853" ref_strand="+" ref_description="SGN-E285853 [cLES-5-H20]">
      <seq>aaaccatgtaattcaacaacacgacgttgttgtagttatagttcctcttcctgcacaaggccatctccacgcagccctcgaactctcccgccgcctctcctccgccaacatccccgtttactacgtcagcaccaccgctcacgtccggcaagctcactcccgtgctgccggatgggacccattaaacaccccaaatctcaatttcattgattttcctgttacattcaatgcccctcctacgaacccagatgcatccatcaagttcccttcacaactagtccctgctttcaactcttcaatgcaactacgtaccccaattacagatctagtaaataaattgggttcaatatcgaggagagtgatagttattcatgattttctcacgtcttgggtggttcaagatgtacccaaaatatccaatacagagtgttactgtttacacactgnttctgcttatcttatgtttacatatacttgggaggctgctagaccacctgtacctcctgaagctgaagttgtactcaaacaacttccgtctcaagatgggtgtacttctcctgaagtcattgaatttgctatgaagcaaataaatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50260" stop="51456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50560" g_stop="51156" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E285853" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50560" e_stop="51156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCATGTAAATCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACT</genome_strand>
        <mrna_strand>AAACCATGTAATTCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGNTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454800" ref_strand="+" ref_description="SGN-E454800 [cSTS-24-K24]">
      <seq>cctcgtgccgccaaaaatggcatcaacaacagatcaacaacacgacgtcgttgtagttgtagttcctcttcctgcacaaggccatctccatccagccctccaactctcctgccgcctctcctccgccaacatccccgtttactacgtcagcaccactgctcacgtccggcaagctcactcccgtgctgccggctggaacccattgaaaactccatatcttaatttcattgattttcctgttacattcgatgtccctcctccaaacccagatgcatccatcaaattcccttcacaactcgtccctgctttcaaatcttcaatgcaactacgtaccccagttacagatctagtaaataaattggcttcgatatcgaggagagttattgtagttcatgattttctcacgtcttgggtggtacaagatgtaccaaaaatacccaatacagagtgttactgtttacacactgtttctgcttatcttatgtttacatatacttgggaggctgctagaccacctgtacctcctgaagctgaagttgtactcaaacaacttccgtctcaagatgggtgtacttctcctgaagtcatagaatttgctataaagcaaataaatgtaattcaggatgctgggaatatttacagtacgtctcgagtaatcgacggaatgtaccttgatttgacggagaaaatgagtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50234" stop="51535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50571" g_stop="51236" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="698" r_length="666" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E454800" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50571" e_stop="51236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACTTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTC</genome_strand>
        <mrna_strand>ATCAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCATCCAGCCCTCCAACTCTCCTGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACTGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGCTGGAACCCATTGAAAACTCCATATCTTAATTTCATTGATTTTCCTGTTACATTCGATGTCCCTCCTCCAAACCCAGATGCATCCATCAAATTCCCTTCACAACTCGTCCCTGCTTTCAAATCTTCAATGCAACTACGTACCCCAGTTACAGATCTAGTAAATAAATTGGCTTCGATATCGAGGAGAGTTATTGTAGTTCATGATTTTCTCACGTCTTGGGTGGTACAAGATGTACCAAAAATACCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATAGAATTTGCTATAAAGCAAATAAATGTAATTCAGGATGCTGGGAATATTTACAGTACGTCTCGAGTAATCGACGGAATGTACCTTGATTTGACGGAGAAAATGAGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726006" ref_strand="+" ref_description="SGN-E726006 [LA10AA11]">
      <seq>cgacgttgttgtagttatagttcctcttcctgcacaaggccatctccacgcagccctcgaactctcccgccgcctctcctccgccaacatccccgtttactacgtcagcaccaccgctcacgtccggcaagctcactcccgtgctgccggatgggacccattaaacaccccaaatctcaatttcattgattttcctgttacattcaatgcccctcctacgaacccagatgcatccatcaagttcccttcacaactagtccctgctttcaactcttcaatgcaactacgtaccccaattacagatctagtaaataaattgggttcaatatcgaggagagtgatagttattcatgattttctcacgtcttgggtggttcaagatgtacccaaaatatccaatacagagtgttactgtttacacactgtttctgcttatcttatgtttacatatacttgggaggctgctagaccacctgtacctcctgaagctgaagttgtactcaaacaacttccgtctcaagatgggtgtacttctcctgaagtcattgaatttgctatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50281" stop="51441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50581" g_stop="51141" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E726006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50581" e_stop="51141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAA</genome_strand>
        <mrna_strand>CGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570494" ref_strand="+" ref_description="SGN-E570494 [15087]">
      <seq>cagccctccaactctcctgccgcctctcctccgccaacatccccgtttactacgtcagcaccaccgctcacgtccggcaagctcactcccgtgctgccggctggaacccattgaaaactccatatcttaatttcattgattttcctgttacattcgatgtccctcctccaaacccagatgcatccatcaaattcccttcacaactcgtccctgctttcaaatcttcaatgcaactacgtaccccggttacagatctagtaaataaattggcttcgatatcgaggagagttattgtagttcatgattttctcacgtcttgggtggtacaagatgtaccacaaatacccaatacagagtgttactgtttacacactgtttctgcttatcttatgtttacatatgcttgggaggctgctagaccacctgtacctcctgaagctgaagttgtactcaaacaacttccgtctcaagatgggtgtacttctcctgaagtcatagaatttgctataaagcaaataaatgtaattcaggatgctgggaatatttacagtacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50331" stop="51485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50631" g_stop="51185" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E570494" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50631" e_stop="51185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACTTCAGGATGCTGGAAATATTTACAGTACGT</genome_strand>
        <mrna_strand>CAGCCCTCCAACTCTCCTGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGCTGGAACCCATTGAAAACTCCATATCTTAATTTCATTGATTTTCCTGTTACATTCGATGTCCCTCCTCCAAACCCAGATGCATCCATCAAATTCCCTTCACAACTCGTCCCTGCTTTCAAATCTTCAATGCAACTACGTACCCCGGTTACAGATCTAGTAAATAAATTGGCTTCGATATCGAGGAGAGTTATTGTAGTTCATGATTTTCTCACGTCTTGGGTGGTACAAGATGTACCACAAATACCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATGCTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATAGAATTTGCTATAAAGCAAATAAATGTAATTCAGGATGCTGGGAATATTTACAGTACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268617" ref_strand="+" ref_description="SGN-E268617 [cLEI-13-H10]">
      <seq>tcacgtccggcaagctcactcccgtgctgccggatgggacccattaaacaccccaaatctcaatttcattgattttcctgttacattcaatgcccctcctacgaacccagatgcatccatcaagttcccttcacaactagtccctgctttcaactcttcaatgcaactacgtaccccaattacagatctagtaaataaattgggttcaatatcgaggagagtgatagttattcatgattttctcacgtcttgggtggttcaagatgtacccaaaatatccaatacagagtgttactgtttacacactgtttctgcttatcttatgtttacatatacttgggaggctgctagaccacctgtacctcctgaagctgaagttgtactcaaacaacttccgtctcaagatgggtgtacttctcctgaagtcattgaatttgctatgaagcaaataaatgtacttcaggatgctggaaatatttacagtacgtctcgagcaatcgatggaatgtaccttgatttgacagagaaaatgagtgttcctaaggattttaagaactgggctcttggtccattcaatcctgtagatctgaatattgataagaaggatcgtcattattcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50398" stop="51617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50698" g_stop="51317" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E268617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50698" e_stop="51317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACTTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAG</genome_strand>
        <mrna_strand>TCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACTTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413277" ref_strand="+" ref_description="SGN-E413277 [STM-17-L3]">
      <seq>caactacgtaccccagttacagatctagtaaataaattggcttcgatatcgaggagagttattgtagttcatgattttctcacgtcttgggtggtacaagatgtaccaaaaatacccaatacagagtgttactgtttacacactgtttctgcttatcttatgtttacatatacttgggaggctgctagaccacctgtacctcctgaagctgaagttgtactcaaacaacttccgtctcaagatgggtgtacttctcctgaagtcatagaatttgctataaagcaaataaatgtaattcaggatgctgggaatatttacagtacgtctcgagtaatcgacggaatgtaccttgatttgacggagaaaatgagtatttctaaggattttaagaattgggctcttggtccattcaatcctgtaaatctggagtttgacaagaaggaaacccgccattattcacttgagtggctcgacaaacaaccagctagctcggtgattttcgtttcctttggttcaacaacttcgttatctgaagacgaaatcagagagctagctattgggctggaagtaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50561" stop="51730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50861" g_stop="51430" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E413277" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50861" e_stop="51430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACTTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGG--A-TCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGT</genome_strand>
        <mrna_strand>CAACTACGTACCCCAGTTACAGATCTAGTAAATAAATTGGCTTCGATATCGAGGAGAGTTATTGTAGTTCATGATTTTCTCACGTCTTGGGTGGTACAAGATGTACCAAAAATACCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATAGAATTTGCTATAAAGCAAATAAATGTAATTCAGGATGCTGGGAATATTTACAGTACGTCTCGAGTAATCGACGGAATGTACCTTGATTTGACGGAGAAAATGAGTATTTCTAAGGATTTTAAGAATTGGGCTCTTGGTCCATTCAATCCTGTAAATCTGGAGTTTGACAAGAAGGAAACCCGCCATTATTCACTTGAGTGGCTCGACAAACAACCAGCTAGCTCGGTGATTTTCGTTTCCTTTGGTTCAACAACTTCGTTATCTGAAGACGAAATCAGAGAGCTAGCTATTGGGCTGGAAGTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471958" ref_strand="+" ref_description="SGN-E471958 [cSTB-26-H16]">
      <seq>caactacgtaccccagttacagatctagtaaataaattggcttcgatatcgaggagagttattgtagttcatgattttctcacgtcttgggtggtacaagatgtaccaaaaatacccaatacagagtgttactgtttacacactgtttctgcttatcttatgtttacatatacttgggaggctgctagaccacctgtacctcctgaagctgaagttgtactcaaacaacttccgtctcaagatgggtgtacttctcctgaagtcatagaatttgctataaagcaaataaatgtaattcaggatgctgggaatatttacagtacgtctcgagtaatcgacggaatgtaccttgatttgacggagaaaatgagtatttctaaggattttaagaattgggctcttggtccattcaatcctgtaaatctggagtttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50561" stop="51594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50861" g_stop="51295" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E471958" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50861" e_stop="51295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACTTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGAT</genome_strand>
        <mrna_strand>CAACTACGTACCCCAGTTACAGATCTAGTAAATAAATTGGCTTCGATATCGAGGAGAGTTATTGTAGTTCATGATTTTCTCACGTCTTGGGTGGTACAAGATGTACCAAAAATACCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATAGAATTTGCTATAAAGCAAATAAATGTAATTCAGGATGCTGGGAATATTTACAGTACGTCTCGAGTAATCGACGGAATGTACCTTGATTTGACGGAGAAAATGAGTATTTCTAAGGATTTTAAGAATTGGGCTCTTGGTCCATTCAATCCTGTAAATCTGGAGTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731536" ref_strand="+" ref_description="SGN-E731536 [LA27BG06]">
      <seq>ccttaccccaattacagatctagtaaataaattgggttcaatatcgaggagagtgatagttattcatgattttctcacgtcttgggtggttcaagatgtacccaaaatatccaatacagagtgttactgtttacacactgtttctgcttatcttatgtttacatatacttgggaggctgctagaccacctgtacctcctgaagctgaagttgtactcaaacaacttccgtctcaagatgggtgtacttctcctgaagtcattgaatttgctatgaagcaaataaatgtacttcaggatgctggaaatatttacagtacgtctcgagcaatcgatggaatgtaccttgatttgacagagaaaatgagtgttcctaaggattttaagaactgggctcttggtccattcaatcctgtagatctgaatattgataagaaggatcgtcattattcagttgagtggttagataaacaaccagctagctcggtgattttcgtgtcctttggatcaacgacttcgttaaccgaggatgaaatcagagagctagctattgggctggaagcaagtcaacagagatttatctgggtcctgagggacgcagataaaggagatatattctccggtgaagttcgaaaatatcaattgcctgaaggatatgagaagagggtatcggaaagaggacttgtaatgagagattgggcaccacaattggaaattctaggacacccgtctacgggtgggttcatgagtcattgtgggtggaattcttgtatacagagtatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50567" stop="51950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50866" g_stop="51650" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E731536" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50866" e_stop="51650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACTTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATATCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTCTAGGACACCCGTCTACGGGTGGGTTCATGAGTCATTGTGGGTGGAATTCTTGTATAGAGAGTATTTCAA</genome_strand>
        <mrna_strand>CCTTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACTTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATATCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTCTAGGACACCCGTCTACGGGTGGGTTCATGAGTCATTGTGGGTGGAATTCTTGTATACAGAGTATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332651" ref_strand="+" ref_description="SGN-E332651 [cTOD-18-D24]">
      <seq>ttcaggatgctggaaatatttacagtacgtctcgagcaatcgatggaatgtaccttgatttgacagagaaaatgagtgttcctaaggattttaagaactgggctcttggtccattcaatcctgtagatctgaatattgataagaaggatcgtcattattcagttgagtggttagataaacaaccagctagctcggtgattttcgtgtcctttggatcaacgacttcgttaaccgaggatgaaatcagagagctagctattgggctggaagcaagtcaacagagatttatctgggtcctgagggacgcagataaaggagatatattctccggtgaagttcgaaaatatcaattgcctgaaggatatgagaagagggtatcggaaagaggacttgtaatgagagattgggcaccacaattggaaattctaggacacccgtctacgggtgggttcatgagtcattgtgggtggaattcttgtatagagagtatttcaatgggagtgccaatagcggcctggccaatgcattctgatcaacctagaaatgctttgttcataactgaaggactgaaaattggtatatcagtgagagaatgggagcgaagaaaggaagtggtgcctgcagaaactgttgaaaaagttgtgagaacgttaatggcgtctccggagggagaggagatgaaacggaaagctatggagctcaaggaagcagtgaagttggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50856" stop="52178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51156" g_stop="51878" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E332651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51156" e_stop="51878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATATCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTCTAGGACACCCGTCTACGGGTGGGTTCATGAGTCATTGTGGGTGGAATTCTTGTATAGAGAGTATTTCAATGGGAGTGCCAATAGCGGCCTGGCCAATGCATTCTGATCAACCTAGAAATGCTTTGTTCATAACTGAAGGACTGAAAATTGGTATATCAGTGAGAGAATGGGAGCGAAGAAAGGAAGTGGTGCCTGCAGAAACTGTTGAAAAAGTTGTGAGAACGTTAATGGCGTCTCCGGAGGGAGAGGAGATGAAACGGAAAGCTATGGAGCTCAAGGAAGCAGTGAAGTTGGCAG</genome_strand>
        <mrna_strand>TTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATATCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTCTAGGACACCCGTCTACGGGTGGGTTCATGAGTCATTGTGGGTGGAATTCTTGTATAGAGAGTATTTCAATGGGAGTGCCAATAGCGGCCTGGCCAATGCATTCTGATCAACCTAGAAATGCTTTGTTCATAACTGAAGGACTGAAAATTGGTATATCAGTGAGAGAATGGGAGCGAAGAAAGGAAGTGGTGCCTGCAGAAACTGTTGAAAAAGTTGTGAGAACGTTAATGGCGTCTCCGGAGGGAGAGGAGATGAAACGGAAAGCTATGGAGCTCAAGGAAGCAGTGAAGTTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333724" ref_strand="+" ref_description="SGN-E333724 [cTOD-22-O21]">
      <seq>ttcaggatgctggaaatatttacagtacgtctcgagcaatcgatggaatgtaccttgatttgacagagaaaatgagtgttcctaaggattttaagaactgggctcttggtccattcaatcctgtagatctgaatattgataagaaggatcgtcattattcagttgagtggttagataaacaaccagctagctcggtgattttcgtgtcctttggatcaacgacttcgttaaccgaggatgaaatcagagagctagctattgggctggaagcaagtcaacagagatttatctgggtcctgagggacgcagataaaggagatatattctccggtgaagttcgaaaatatcaattgcctgaaggatatgagaagagggtatcggaaagaggacttgtaatgagagattgggcaccacaattggaaattctaggacacccgtctacgggtgggttcatgagtcattgtgggtggaattcttgtatagagagtatttcaatgggagtgccaatagcggcctggccaatgcattctgatcaacctagaaatgctttgttcataactgaaggactgaaaattggtatatcagtgagagaatgggagcgaagaaaggaagtggtgcctgcagaaactgntgaaaaagttgtgagaacgttaatggcgtctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50856" stop="52119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51156" g_stop="51819" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E333724" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51156" e_stop="51819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATATCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTCTAGGACACCCGTCTACGGGTGGGTTCATGAGTCATTGTGGGTGGAATTCTTGTATAGAGAGTATTTCAATGGGAGTGCCAATAGCGGCCTGGCCAATGCATTCTGATCAACCTAGAAATGCTTTGTTCATAACTGAAGGACTGAAAATTGGTATATCAGTGAGAGAATGGGAGCGAAGAAAGGAAGTGGTGCCTGCAGAAACTGTTGAAAAAGTTGTGAGAACGTTAATGGCGTCTCC</genome_strand>
        <mrna_strand>TTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATATCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTCTAGGACACCCGTCTACGGGTGGGTTCATGAGTCATTGTGGGTGGAATTCTTGTATAGAGAGTATTTCAATGGGAGTGCCAATAGCGGCCTGGCCAATGCATTCTGATCAACCTAGAAATGCTTTGTTCATAACTGAAGGACTGAAAATTGGTATATCAGTGAGAGAATGGGAGCGAAGAAAGGAAGTGGTGCCTGCAGAAACTGNTGAAAAAGTTGTGAGAACGTTAATGGCGTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333148" ref_strand="+" ref_description="SGN-E333148 [cTOD-19-F8]">
      <seq>ttcaggatgctggaaatatttacagtacgtctcgagcaatcgatggaatgtaccttgatttgacagagaaaatgagtgttcctaaggattttaagaactgggctcttggtccattcaatcctgtagatctgaatattgataagaaggatcgtcattattcagttgagtggttagataaacaaccagctagctcggtgattttcgtgtcctttggatcaacgacttcgttaaccgaggatgaaatcagagagctagctattgggctggaagcaagtcaacagagatttatctgggtcctgagggacgcagataaaggagatatattctccggtgaagttcgaaaatatcaattgcctgaaggatatgagaagagggtatcggaaagaggacttgtaatgagagattgggcaccacaattggaaattctaggacacccgtctacgggtgggttcatgagtcattgtgggtggaattcttgtatagagagtatttcaatgggagtgccaatagcggcctggccaatgcattctgatcaacctagaaatgctttgttcataactgaangactgaaaattggtatatcagtgagagaatgggagcgaagaaaggaagtggtgcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50856" stop="52077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51156" g_stop="51777" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E333148" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51156" e_stop="51777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATATCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTCTAGGACACCCGTCTACGGGTGGGTTCATGAGTCATTGTGGGTGGAATTCTTGTATAGAGAGTATTTCAATGGGAGTGCCAATAGCGGCCTGGCCAATGCATTCTGATCAACCTAGAAATGCTTTGTTCATAACTGAAGGACTGAAAATTGGTATATCAGTGAGAGAATGGGAGCGAAGAAAGGAAGTGGTGCCTGC</genome_strand>
        <mrna_strand>TTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATATCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTCTAGGACACCCGTCTACGGGTGGGTTCATGAGTCATTGTGGGTGGAATTCTTGTATAGAGAGTATTTCAATGGGAGTGCCAATAGCGGCCTGGCCAATGCATTCTGATCAACCTAGAAATGCTTTGTTCATAACTGAANGACTGAAAATTGGTATATCAGTGAGAGAATGGGAGCGAAGAAAGGAAGTGGTGCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354915" ref_strand="+" ref_description="SGN-E354915 [cTOS-19-I11]">
      <seq>tcgaacttcaccggagaatatatctcctttatctgcgtccctcaggacccagataaatctctgttgacttgcttccagcccaatagctagctctctgatttcatcctcggttaacgaagtcgttgatccaaaggacacgaaaatcaccgagctagctggttgtttatctaaccactcaactgaataatgacgatccttcttatcaatattcagatctacaggattgaatggaccaagagcccagttcttaaaatccttaggaacactcattttctctgtcaaatcaaggtacattccatcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="51796" stop="50892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51496" g_stop="51192" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E354915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51496" e_stop="51192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACTTCACCGGAGAATATATCTCCTTTATCTGCGTCCCTCAGGACCCAGATAAATCTCTGTTGACTTGCTTCCAGCCCAATAGCTAGCTCTCTGATTTCATCCTCGGTTAACGAAGTCGTTGATCCAAAGGACACGAAAATCACCGAGCTAGCTGGTTGTTTATCTAACCACTCAACTGAATAATGACGATCCTTCTTATCAATATTCAGATCTACAGGATTGAATGGACCAAGAGCCCAGTTCTTAAAATCCTTAGGAACACTCATTTTCTCTGTCAAATCAAGGTACATTCCATCGATTG</genome_strand>
        <mrna_strand>TCGAACTTCACCGGAGAATATATCTCCTTTATCTGCGTCCCTCAGGACCCAGATAAATCTCTGTTGACTTGCTTCCAGCCCAATAGCTAGCTCTCTGATTTCATCCTCGGTTAACGAAGTCGTTGATCCAAAGGACACGAAAATCACCGAGCTAGCTGGTTGTTTATCTAACCACTCAACTGAATAATGACGATCCTTCTTATCAATATTCAGATCTACAGGATTGAATGGACCAAGAGCCCAGTTCTTAAAATCCTTAGGAACACTCATTTTCTCTGTCAAATCAAGGTACATTCCATCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350507" ref_strand="+" ref_description="SGN-E350507 [cTOS-5-M3]">
      <seq>gaacttcaccggagaatatatctcctttatctgcgtccctcaagacccagatagatctctgatgacttgcttccagcccaataactagctctctgatttcatcctcggataacgaagtcgttgatccgaaggacacgaaaatcaccgagctagctggttgtttatctaaccactcaactgaataatgacgatccttcttatcaatattcacatctacaggattgaatggaccaagagcccagttcttaaaatccttacgaacactcattttctctgtcaaatcaaggtacattccatcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="51794" stop="50892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51494" g_stop="51192" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E350507" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51494" e_stop="51192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTCACCGGAGAATATATCTCCTTTATCTGCGTCCCTCAGGACCCAGATAAATCTCTGTTGACTTGCTTCCAGCCCAATAGCTAGCTCTCTGATTTCATCCTCGGTTAACGAAGTCGTTGATCCAAAGGACACGAAAATCACCGAGCTAGCTGGTTGTTTATCTAACCACTCAACTGAATAATGACGATCCTTCTTATCAATATTCAGATCTACAGGATTGAATGGACCAAGAGCCCAGTTCTTAAAATCCTTAGGAACACTCATTTTCTCTGTCAAATCAAGGTACATTCCATCGATTG</genome_strand>
        <mrna_strand>GAACTTCACCGGAGAATATATCTCCTTTATCTGCGTCCCTCAAGACCCAGATAGATCTCTGATGACTTGCTTCCAGCCCAATAACTAGCTCTCTGATTTCATCCTCGGATAACGAAGTCGTTGATCCGAAGGACACGAAAATCACCGAGCTAGCTGGTTGTTTATCTAACCACTCAACTGAATAATGACGATCCTTCTTATCAATATTCACATCTACAGGATTGAATGGACCAAGAGCCCAGTTCTTAAAATCCTTACGAACACTCATTTTCTCTGTCAAATCAAGGTACATTCCATCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469131" ref_strand="+" ref_description="SGN-E469131 [cSTB-10-F23]">
      <seq>tccatttccttgtgagttactccaccctccatcactgccaacttcactgcttccttcagcgctgtagctttccgtttcatctcctctccctccggagacgccattaacgttctcacaactttttcaacagtttctgcaggcaccacttcctttcttcgcttccattctctcactggtataccaattttcagtccttcagttatgaacaacgcatttctaggctgatcagaatgcattggccacgccgctattggcactcccattgaaatactctctatacaagaattccatccacaatgactcataaacccgcctgttgacgtgtgtcctaaaatttccaattgtggtgcccaatctctcattacaagtcctctttccgataccctcttctcatatccttcaggcaattgatattttcgaacttcaccggagaatatatctcctttatctgcgtccctcaggacccagatatatctctgttgacttacttccagcccaatagctagctctctgatttcgtcttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="52212" stop="51089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51912" g_stop="51387" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E469131" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51912" e_stop="51387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTCCTTGTGAGTTACTCCACCCTCCATCACTGCCAACTTCACTGCTTCCTTGAGCTCCATAGCTTTCCGTTTCATCTCCTCTCCCTCCGGAGACGCCATTAACGTTCTCACAACTTTTTCAACAGTTTCTGCAGGCACCACTTCCTTTCTTCGCTCCCATTCTCTCACTGATATACCAATTTTCAGTCCTTCAGTTATGAACAAAGCATTTCTAGGTTGATCAGAATGCATTGGCCAGGCCGCTATTGGCACTCCCATTGAAATACTCTCTATACAAGAATTCCACCCACAATGACTCATGAACCCACCCGTAGACGGGTGTCCTAGAATTTCCAATTGTGGTGCCCAATCTCTCATTACAAGTCCTCTTTCCGATACCCTCTTCTCATATCCTTCAGGCAATTGATATTTTCGAACTTCACCGGAGAATATATCTCCTTTATCTGCGTCCCTCAGGACCCAGATAAATCTCTGTTGACTTGCTTCCAGCCCAATAGCTAGCTCTCTGATTTCATCCTCGG</genome_strand>
        <mrna_strand>TCCATTTCCTTGTGAGTTACTCCACCCTCCATCACTGCCAACTTCACTGCTTCCTTCAGCGCTGTAGCTTTCCGTTTCATCTCCTCTCCCTCCGGAGACGCCATTAACGTTCTCACAACTTTTTCAACAGTTTCTGCAGGCACCACTTCCTTTCTTCGCTTCCATTCTCTCACTGGTATACCAATTTTCAGTCCTTCAGTTATGAACAACGCATTTCTAGGCTGATCAGAATGCATTGGCCACGCCGCTATTGGCACTCCCATTGAAATACTCTCTATACAAGAATTCCATCCACAATGACTCATAAACCCGCCTGTTGACGTGTGTCCTAAAATTTCCAATTGTGGTGCCCAATCTCTCATTACAAGTCCTCTTTCCGATACCCTCTTCTCATATCCTTCAGGCAATTGATATTTTCGAACTTCACCGGAGAATATATCTCCTTTATCTGCGTCCCTCAGGACCCAGATATATCTCTGTTGACTTACTTCCAGCCCAATAGCTAGCTCTCTGATTTCGTCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588131" ref_strand="+" ref_description="SGN-E588131 [41677]">
      <seq>ttggagattcagttgttgatgcaggaaataataattatcttaaaacaattgtcaaggcaaattttcctccttatggaagagattttcctaaacaaataccaactggaagattttgcaatggaaaacttgcctcagatttcacagctgagaatcttgggtttacttcatatccaccagcttatctcagcaagaaagccaaaggcaaaaatcttttgattggagccaattttgcctcaggttcatctggttactatgacactacttctaggctatatgatgcaattcctttgagcaaacaacttgaatattacaaagaataccagaagaaattggtggtaattgcagggaaattaaatgctacatcaataatcaatggttcaattcacttaatcagtgctggaagtagtgattttgttcagaattattatattaatcctttgctctacaaagtttacactccaaatcaattctcagatatcctcatcaagtcctacactaaatttatattggaattgtatggattgggagcaagaaagattggagtgacaacagtaccaccaattggatgtttaccagcatccattacaatatttggcaaagataacaacaattgtgtcaagaagatgaacaaagtggcaatttcattcaacaataagctcaatgacactttctatcaaattgcaaaaaaagctttctggtctccaatcttggtatcttgggataatctaccaaccccttccttggaccttgtcacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="68332" stop="64784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68032" g_stop="67889" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67888" i_stop="66906" i_length="983">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66905" g_stop="66775" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="275" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66774" i_stop="65870" i_length="905">
            <donor d_prob="0.422" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65869" g_stop="65636" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="509" r_length="234" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65635" i_stop="65327" i_length="309">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65326" g_stop="65084" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="758" r_length="249" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E588131" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68032" e_stop="67889"/>
          <exon e_start="66905" e_stop="66775"/>
          <exon e_start="65869" e_stop="65636"/>
          <exon e_start="65326" e_stop="65084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTATCAAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAAAAGATACCAACTGGAAGATTTTGCAATGGAAAACTTGCGTCAGACTTCACGGGTACTTATTTTTCTTCGATTTAAGATATATATATCGACAGTTTAATTTTATAAAACGTATACTAGAAGTAGTTTTATATGTTGTACGGTACATATTAGTTGTCATATTTATTTACTCTACTATGGAGTAACATTTTAAAAATGTATTTTTCATTATATTGATATGCGAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTTGAATACTTAATTTTTTTTCTTTAAAATATAATTGATGTAATTTAATTTAACTTTACACATAGTCAAATTAACTTTCGAAAAATGTAACACGACAAATAAAAGTGAACAGATGGAATACATATGTAAAATATTAATTAACTCATCTCCTCTTACTAATATACTCTTTTCTTTTATTAAATTTTGTAAACATTTTTTTTTGAAAATCTCTCTTCTTTTTTTTTGTTTGTTTTGTACGCTTAAAATGACAAAAAGTGGTGGAACTATCAAAGAATATTCAACCCTTTTATCCATTTGGCAAAGAAGCCATTGCTATTAGTAAAACACAAAATTTAGCGACGGATCAATTTTGTAGCTTTACAATAACTTTTATAAGGTAATTTCACAGATTGACGAATTAAGGACAATTTATTTGAAAATTATGTAAGCTACGAGATTTTTAACGAAATATTTACTAAGAATTTTTGTATAATTGATCTTATATTATACTAAATTAAAACTTAAATCACTTAAAAGCAAATATAATGCAACAAGCCAACAATCATGAAGTATAGGTTTCGAGTTTGAATTTTTGAGAATAAAAAAGACCTAATTAGAAATGCTGATAAATATCTTTAAAAAGCAAATGTAATGTAACAAGTCGAGTTTGAATCTCTGAGAATAAAAAGAATCTTGTTGAAAATACTGACCTTATATATTGTGAGAATTCATTAATTAAATTTGAGTGAGAAATATATATTATTAAAAAAACTAATGTTTGTCCTTTGTGTTGCATAATACAGCTGAGAATCTTGGGTTTACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGGAAAAATCTTTTGATTGGAGCCAATTTTGCCTCTGGATCATCTGGTTACTATGACACTACTGCTAGGCTATATGTAAGTAACTGTAGTTTGGGAAAAGGGTTTGAAATATATTTAAACTTTAATCGATATTAATGTTATGATATCAAATTTTATAGAGTATCTTTTATCTATATCCTATTTAATATTGTATTTTAAAGGTATATATGTGTTCATGTGGACATTATAAATATTGCGTCATTTTAAATAGTAATATGTCCATGTGGACACATATATGTATACCTTTAAAATACATTTTTAAAAAGTGCAGGTGATAAAAAGTCTTTCATAAGGTTCGATATCGTAATAGCATTTTCGGTCAAAATTAAAGTAGTTTTTAAACCCTTTTCCCTTTTAGTTCAAACTTTAAAAATAAAATTGACTTTGGTAGAAAGCACTTTATTCTCGAAATGGGCATCTGAAACTGAGTGATAAAACAAATTAAAAGGAAAAAAAACTCACACTTCTCTTTTCTAATTTATGTGATAATATTTTATTTTTAATCAATTTTAAAAAAGAATAATCTAAATTTAGAAAAAATTGAGCTTAAAATTTTCATTTTATCCTTAATAGGAAGCTTTTGTTTTCATACAAAATGCTTTAGAACCATACAAAAATAATAACATGATTTAAATTTTATTTTTTCTCAAAAGTTCCTTTTAAAATAAATAAATAAATAAATTATGTGTCTAGTCAAATCTATCACATAAATTAAAATCGAGAAAATATTATCTCCATTCATTTTTACTTGTCATAATTTTCTTTTTTTAGAGTCAAATAATAAAGAGTTTTAACTAATATTTTACGATGTATTTTTTCATTGATATGTAAAAAATGCAATTTAAAGTACTTTTATATATTTTTAAAATATCTAAATTTTTAATTTAAAATATCAAATTAATATAATCTAATTTAACACTAATCTATTTTTTTTTTATCAGGATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATATCAAAAGAAATTGGTGGTAATTGCAGGGAAATTAAATGCTTCATCAATAACCAATGCTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCTTTGCTCTACAAAGTTTATACTCCAGATCAATTCTCAGATATCCTCATCAAGTCATACACTAAATTTATATTGGTATATTCTTTTTCCTCTTTATTTTTCGAAAAACAACCTCTCTACGATTTATATTCATAAGACAGGAATAAGGTCTGTATTTTATATACACATTATCTTCTTCAGACTCTACCAATAGAATTACACAGAATATATTATACAAGAAGTAACTTGTTATAACAATTACAAGACAACAAGTGATCTGATGGTATAAAAGTTTCTTAAGTTAATAATGTATATAACTTAAAAATTATTTTTAATAAATTTAAATTATATATACTGACAATATAATAAGTTTTTTTAAAAAAATTGTTGTGTTGTGGCTGATAGGAATTGTATGGATTAGGAGCAAGAAAGATTGGAGTGACAACAGTACCACCAATTGGATGTTTACCAGCATCAATTACAATATTTGGCAAAGACAACAATAGTTGTGTCAAGAAGATGAACAAAGTGGCAATTTCATTCAACAATAAGCTCAATGACAC-TTCTATCAAATTGCAAAAAAAGCTTTTTGGTCT-CAATCTTGTTATCTT-GGAT-ATATACCAACCCC-TCCTT-GACCTTGTCACACAT</genome_strand>
        <mrna_strand>TTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTGTCAAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAACAAATACCAACTGGAAGATTTTGCAATGGAAAACTTGCCTCAGATTTCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAATCTTGGGTTTACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGCAAAAATCTTTTGATTGGAGCCAATTTTGCCTCAGGTTCATCTGGTTACTATGACACTACTTCTAGGCTATAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATACCAGAAGAAATTGGTGGTAATTGCAGGGAAATTAAATGCTACATCAATAATCAATGGTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCTTTGCTCTACAAAGTTTACACTCCAAATCAATTCTCAGATATCCTCATCAAGTCCTACACTAAATTTATATTG.....................................................................................................................................................................................................................................................................................................................GAATTGTATGGATTGGGAGCAAGAAAGATTGGAGTGACAACAGTACCACCAATTGGATGTTTACCAGCATCCATTACAATATTTGGCAAAGATAACAACAATTGTGTCAAGAAGATGAACAAAGTGGCAATTTCATTCAACAATAAGCTCAATGACACTTTCTATCAAATTGCAAAAAAAGCTTTCTGGTCTCCAATCTTGGTATCTTGGGATAATCTACCAACCCCTTCCTTGGACCTTGTCACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425445" ref_strand="+" ref_description="SGN-E425445 [STM-45-G17]">
      <seq>gcattatttatttttggagattcagttgttgatgcaggaaataataattatcttaaaacaattgtcaaggcaaattttcctccttatggaagagattttcctaaacaaataccaactggaagattttgcaatggaaaacttgcctcagatttcacagctgagaatcttgggttcacttcatatccaccagcttatctcagcaagaaagccaaaggcaaaaatcttttgattggagccaattttgcctcaggttcatctggttactatgacactacttctaggctatatgatgcaattcctttgagcaaacaacttgaatattacaaagaataccagaagaaattggtggtaattgcagggaagttaaatgctacatcaataatcaatggttcaattcacttaatcagtgctggaagtagtgattttgttcagaattattatattaatccattgctctacaaagtttacactccagatcaattctcagatatcctcatcaagtcctacactaaatttatattggaattgtatggattgggagcaagaaagattggagtgacaacagtaccaccaattggatgtttaccagcatccattacaatatttggcaaagataacaacaattgtgtcaagaagatgaacaaagtggcaatttcattncacaataagctcaatgacacatctatcaaattgcaaaaaaagctttctggtctcaatcttgttatcttggatatctaccaacccctcctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="68345" stop="64797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68045" g_stop="67889" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67888" i_stop="66906" i_length="983">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66905" g_stop="66775" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="288" r_length="131" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66774" i_stop="65870" i_length="905">
            <donor d_prob="0.422" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65869" g_stop="65636" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="522" r_length="234" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65635" i_stop="65327" i_length="309">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65326" g_stop="65097" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="752" r_length="230" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E425445" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68045" e_stop="67889"/>
          <exon e_start="66905" e_stop="66775"/>
          <exon e_start="65869" e_stop="65636"/>
          <exon e_start="65326" e_stop="65097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTATTTATTTTTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTATCAAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAAAAGATACCAACTGGAAGATTTTGCAATGGAAAACTTGCGTCAGACTTCACGGGTACTTATTTTTCTTCGATTTAAGATATATATATCGACAGTTTAATTTTATAAAACGTATACTAGAAGTAGTTTTATATGTTGTACGGTACATATTAGTTGTCATATTTATTTACTCTACTATGGAGTAACATTTTAAAAATGTATTTTTCATTATATTGATATGCGAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTTGAATACTTAATTTTTTTTCTTTAAAATATAATTGATGTAATTTAATTTAACTTTACACATAGTCAAATTAACTTTCGAAAAATGTAACACGACAAATAAAAGTGAACAGATGGAATACATATGTAAAATATTAATTAACTCATCTCCTCTTACTAATATACTCTTTTCTTTTATTAAATTTTGTAAACATTTTTTTTTGAAAATCTCTCTTCTTTTTTTTTGTTTGTTTTGTACGCTTAAAATGACAAAAAGTGGTGGAACTATCAAAGAATATTCAACCCTTTTATCCATTTGGCAAAGAAGCCATTGCTATTAGTAAAACACAAAATTTAGCGACGGATCAATTTTGTAGCTTTACAATAACTTTTATAAGGTAATTTCACAGATTGACGAATTAAGGACAATTTATTTGAAAATTATGTAAGCTACGAGATTTTTAACGAAATATTTACTAAGAATTTTTGTATAATTGATCTTATATTATACTAAATTAAAACTTAAATCACTTAAAAGCAAATATAATGCAACAAGCCAACAATCATGAAGTATAGGTTTCGAGTTTGAATTTTTGAGAATAAAAAAGACCTAATTAGAAATGCTGATAAATATCTTTAAAAAGCAAATGTAATGTAACAAGTCGAGTTTGAATCTCTGAGAATAAAAAGAATCTTGTTGAAAATACTGACCTTATATATTGTGAGAATTCATTAATTAAATTTGAGTGAGAAATATATATTATTAAAAAAACTAATGTTTGTCCTTTGTGTTGCATAATACAGCTGAGAATCTTGGGTTTACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGGAAAAATCTTTTGATTGGAGCCAATTTTGCCTCTGGATCATCTGGTTACTATGACACTACTGCTAGGCTATATGTAAGTAACTGTAGTTTGGGAAAAGGGTTTGAAATATATTTAAACTTTAATCGATATTAATGTTATGATATCAAATTTTATAGAGTATCTTTTATCTATATCCTATTTAATATTGTATTTTAAAGGTATATATGTGTTCATGTGGACATTATAAATATTGCGTCATTTTAAATAGTAATATGTCCATGTGGACACATATATGTATACCTTTAAAATACATTTTTAAAAAGTGCAGGTGATAAAAAGTCTTTCATAAGGTTCGATATCGTAATAGCATTTTCGGTCAAAATTAAAGTAGTTTTTAAACCCTTTTCCCTTTTAGTTCAAACTTTAAAAATAAAATTGACTTTGGTAGAAAGCACTTTATTCTCGAAATGGGCATCTGAAACTGAGTGATAAAACAAATTAAAAGGAAAAAAAACTCACACTTCTCTTTTCTAATTTATGTGATAATATTTTATTTTTAATCAATTTTAAAAAAGAATAATCTAAATTTAGAAAAAATTGAGCTTAAAATTTTCATTTTATCCTTAATAGGAAGCTTTTGTTTTCATACAAAATGCTTTAGAACCATACAAAAATAATAACATGATTTAAATTTTATTTTTTCTCAAAAGTTCCTTTTAAAATAAATAAATAAATAAATTATGTGTCTAGTCAAATCTATCACATAAATTAAAATCGAGAAAATATTATCTCCATTCATTTTTACTTGTCATAATTTTCTTTTTTTAGAGTCAAATAATAAAGAGTTTTAACTAATATTTTACGATGTATTTTTTCATTGATATGTAAAAAATGCAATTTAAAGTACTTTTATATATTTTTAAAATATCTAAATTTTTAATTTAAAATATCAAATTAATATAATCTAATTTAACACTAATCTATTTTTTTTTTATCAGGATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATATCAAAAGAAATTGGTGGTAATTGCAGGGAAATTAAATGCTTCATCAATAACCAATGCTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCTTTGCTCTACAAAGTTTATACTCCAGATCAATTCTCAGATATCCTCATCAAGTCATACACTAAATTTATATTGGTATATTCTTTTTCCTCTTTATTTTTCGAAAAACAACCTCTCTACGATTTATATTCATAAGACAGGAATAAGGTCTGTATTTTATATACACATTATCTTCTTCAGACTCTACCAATAGAATTACACAGAATATATTATACAAGAAGTAACTTGTTATAACAATTACAAGACAACAAGTGATCTGATGGTATAAAAGTTTCTTAAGTTAATAATGTATATAACTTAAAAATTATTTTTAATAAATTTAAATTATATATACTGACAATATAATAAGTTTTTTTAAAAAAATTGTTGTGTTGTGGCTGATAGGAATTGTATGGATTAGGAGCAAGAAAGATTGGAGTGACAACAGTACCACCAATTGGATGTTTACCAGCATCAATTACAATATTTGGCAAAGACAACAATAGTTGTGTCAAGAAGATGAACAAAGTGGCAATTTCATTCAACAATAAGCTCAATGACACTTCTATCAAATTGCAAAAAAAGCTTTTTGGTCTCAATCTTGTTATCTTGGATATATACCAACCCCTCCTTGA</genome_strand>
        <mrna_strand>GCATTATTTATTTTTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTGTCAAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAACAAATACCAACTGGAAGATTTTGCAATGGAAAACTTGCCTCAGATTTCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAATCTTGGGTTCACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGCAAAAATCTTTTGATTGGAGCCAATTTTGCCTCAGGTTCATCTGGTTACTATGACACTACTTCTAGGCTATAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATACCAGAAGAAATTGGTGGTAATTGCAGGGAAGTTAAATGCTACATCAATAATCAATGGTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCATTGCTCTACAAAGTTTACACTCCAGATCAATTCTCAGATATCCTCATCAAGTCCTACACTAAATTTATATTG.....................................................................................................................................................................................................................................................................................................................GAATTGTATGGATTGGGAGCAAGAAAGATTGGAGTGACAACAGTACCACCAATTGGATGTTTACCAGCATCCATTACAATATTTGGCAAAGATAACAACAATTGTGTCAAGAAGATGAACAAAGTGGCAATTTCATTNCACAATAAGCTCAATGACACATCTATCAAATTGCAAAAAAAGCTTTCTGGTCTCAATCTTGTTATCTTGGATATCTACCAACCCCTCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454645" ref_strand="+" ref_description="SGN-E454645 [cSTS-23-P16]">
      <seq>cgagggccattatttatttttggagattcagttgttgatgcaggaaataataattatcttaaaacaattgtcaaggcaaattttcctccttatggaagagattttcctaaacaaataccaactggaagattttgcaatggaaaacttgcctcagatttcacagctgagaatcttgggttcacttcatatccaccagcttatctcagcaagaaagccaaaggcaaaaatcttttgattggagccaattttgcctcaggttcatctggttactatgacactacttctaggctatatgatgcaattcctttgagcaaacaacttgaatattacaaagaataccagaagaaattggtggtaattgcagggaagttaaatgctacatcaataatcaatggttcaattcacttaatcagtgctggaagtagtgattttgttcagaattattatattaatccattgctctacaaagtttacactccagatcaattctcagatatcctcatcaagtcctacactaaatttatattggaattgtatggattgggagcaagaaagattggagtgacaacagtaccaccaattggatgtttaccagcatccattacaatatttggcaaagataacaacaattgtgtcaagaagatgaacaaagtggcaatttcattcaacaataagctcaatgacacatctatcaaattgcaaaaaaagctttctggtctcaatcctgnntatcttggatatctaccaacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="68344" stop="64828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68051" g_stop="67889" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67888" i_stop="66906" i_length="983">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66905" g_stop="66775" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="294" r_length="131" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66774" i_stop="65870" i_length="905">
            <donor d_prob="0.422" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65869" g_stop="65636" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="528" r_length="234" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65635" i_stop="65327" i_length="309">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65326" g_stop="65104" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="752" r_length="224" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E454645" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68051" e_stop="67889"/>
          <exon e_start="66905" e_stop="66775"/>
          <exon e_start="65869" e_stop="65636"/>
          <exon e_start="65326" e_stop="65104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAGCATTATTTATTTTTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTATCAAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAAAAGATACCAACTGGAAGATTTTGCAATGGAAAACTTGCGTCAGACTTCACGGGTACTTATTTTTCTTCGATTTAAGATATATATATCGACAGTTTAATTTTATAAAACGTATACTAGAAGTAGTTTTATATGTTGTACGGTACATATTAGTTGTCATATTTATTTACTCTACTATGGAGTAACATTTTAAAAATGTATTTTTCATTATATTGATATGCGAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTTGAATACTTAATTTTTTTTCTTTAAAATATAATTGATGTAATTTAATTTAACTTTACACATAGTCAAATTAACTTTCGAAAAATGTAACACGACAAATAAAAGTGAACAGATGGAATACATATGTAAAATATTAATTAACTCATCTCCTCTTACTAATATACTCTTTTCTTTTATTAAATTTTGTAAACATTTTTTTTTGAAAATCTCTCTTCTTTTTTTTTGTTTGTTTTGTACGCTTAAAATGACAAAAAGTGGTGGAACTATCAAAGAATATTCAACCCTTTTATCCATTTGGCAAAGAAGCCATTGCTATTAGTAAAACACAAAATTTAGCGACGGATCAATTTTGTAGCTTTACAATAACTTTTATAAGGTAATTTCACAGATTGACGAATTAAGGACAATTTATTTGAAAATTATGTAAGCTACGAGATTTTTAACGAAATATTTACTAAGAATTTTTGTATAATTGATCTTATATTATACTAAATTAAAACTTAAATCACTTAAAAGCAAATATAATGCAACAAGCCAACAATCATGAAGTATAGGTTTCGAGTTTGAATTTTTGAGAATAAAAAAGACCTAATTAGAAATGCTGATAAATATCTTTAAAAAGCAAATGTAATGTAACAAGTCGAGTTTGAATCTCTGAGAATAAAAAGAATCTTGTTGAAAATACTGACCTTATATATTGTGAGAATTCATTAATTAAATTTGAGTGAGAAATATATATTATTAAAAAAACTAATGTTTGTCCTTTGTGTTGCATAATACAGCTGAGAATCTTGGGTTTACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGGAAAAATCTTTTGATTGGAGCCAATTTTGCCTCTGGATCATCTGGTTACTATGACACTACTGCTAGGCTATATGTAAGTAACTGTAGTTTGGGAAAAGGGTTTGAAATATATTTAAACTTTAATCGATATTAATGTTATGATATCAAATTTTATAGAGTATCTTTTATCTATATCCTATTTAATATTGTATTTTAAAGGTATATATGTGTTCATGTGGACATTATAAATATTGCGTCATTTTAAATAGTAATATGTCCATGTGGACACATATATGTATACCTTTAAAATACATTTTTAAAAAGTGCAGGTGATAAAAAGTCTTTCATAAGGTTCGATATCGTAATAGCATTTTCGGTCAAAATTAAAGTAGTTTTTAAACCCTTTTCCCTTTTAGTTCAAACTTTAAAAATAAAATTGACTTTGGTAGAAAGCACTTTATTCTCGAAATGGGCATCTGAAACTGAGTGATAAAACAAATTAAAAGGAAAAAAAACTCACACTTCTCTTTTCTAATTTATGTGATAATATTTTATTTTTAATCAATTTTAAAAAAGAATAATCTAAATTTAGAAAAAATTGAGCTTAAAATTTTCATTTTATCCTTAATAGGAAGCTTTTGTTTTCATACAAAATGCTTTAGAACCATACAAAAATAATAACATGATTTAAATTTTATTTTTTCTCAAAAGTTCCTTTTAAAATAAATAAATAAATAAATTATGTGTCTAGTCAAATCTATCACATAAATTAAAATCGAGAAAATATTATCTCCATTCATTTTTACTTGTCATAATTTTCTTTTTTTAGAGTCAAATAATAAAGAGTTTTAACTAATATTTTACGATGTATTTTTTCATTGATATGTAAAAAATGCAATTTAAAGTACTTTTATATATTTTTAAAATATCTAAATTTTTAATTTAAAATATCAAATTAATATAATCTAATTTAACACTAATCTATTTTTTTTTTATCAGGATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATATCAAAAGAAATTGGTGGTAATTGCAGGGAAATTAAATGCTTCATCAATAACCAATGCTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCTTTGCTCTACAAAGTTTATACTCCAGATCAATTCTCAGATATCCTCATCAAGTCATACACTAAATTTATATTGGTATATTCTTTTTCCTCTTTATTTTTCGAAAAACAACCTCTCTACGATTTATATTCATAAGACAGGAATAAGGTCTGTATTTTATATACACATTATCTTCTTCAGACTCTACCAATAGAATTACACAGAATATATTATACAAGAAGTAACTTGTTATAACAATTACAAGACAACAAGTGATCTGATGGTATAAAAGTTTCTTAAGTTAATAATGTATATAACTTAAAAATTATTTTTAATAAATTTAAATTATATATACTGACAATATAATAAGTTTTTTTAAAAAAATTGTTGTGTTGTGGCTGATAGGAATTGTATGGATTAGGAGCAAGAAAGATTGGAGTGACAACAGTACCACCAATTGGATGTTTACCAGCATCAATTACAATATTTGGCAAAGACAACAATAGTTGTGTCAAGAAGATGAACAAAGTGGCAATTTCATTCAACAATAAGCTCAATGACACTTCTATCAAATTGCAAAAAAAGCTTTTTGGTCTCAATCTTG-TTATCTTGGATATATACCAACCCC</genome_strand>
        <mrna_strand>CGAGGGCCATTATTTATTTTTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTGTCAAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAACAAATACCAACTGGAAGATTTTGCAATGGAAAACTTGCCTCAGATTTCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAATCTTGGGTTCACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGCAAAAATCTTTTGATTGGAGCCAATTTTGCCTCAGGTTCATCTGGTTACTATGACACTACTTCTAGGCTATAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATACCAGAAGAAATTGGTGGTAATTGCAGGGAAGTTAAATGCTACATCAATAATCAATGGTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCATTGCTCTACAAAGTTTACACTCCAGATCAATTCTCAGATATCCTCATCAAGTCCTACACTAAATTTATATTG.....................................................................................................................................................................................................................................................................................................................GAATTGTATGGATTGGGAGCAAGAAAGATTGGAGTGACAACAGTACCACCAATTGGATGTTTACCAGCATCCATTACAATATTTGGCAAAGATAACAACAATTGTGTCAAGAAGATGAACAAAGTGGCAATTTCATTCAACAATAAGCTCAATGACACATCTATCAAATTGCAAAAAAAGCTTTCTGGTCTCAATCCTGNNTATCTTGGATATCTACCAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460959" ref_strand="+" ref_description="SGN-E460959 [cPRO-33-L10]">
      <seq>attatatctattttaaaaaaattattttctgtaatgggaatttcaagtcttttgaggatttatttatttgtatttgccttggatattttgattaatattgttaatgggcagcctttagttccagcattatttatttttggagattcagttgttgatgcaggaaataataattatcttaaaacaattgtcaaggcaaattttcctccttatggaagagattttcctaaacaaataccaactggaagattttgcaatggaaaacttgcctcagatttcacagctgagaatcttgggttcacttcatatccaccagcttatctcagcaagaaagccaaaggcaaaaatcttttgattggagccaattttgcctcaggttcatctggttactatgacactacttctaggctatatgatgcaattcctttgagcaaacaacttgaatattacaaagaataccagaagaaattggtggtaattgcagggaagttaaatgctacatcaataatcaatggttcaattcacttaatcagtgctggaagtagtgattttgttcagaattattatattaatccattgctctacaaagtttacactccagatcaattctcagatatcctcatcaagtcctacactaaaatttatattggaattgtatggattgggagcaagaaagattggagtgacaacagtaccaccaattggatgtttaccagcatccattacaatattttggcaagataacaacaattgtgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="68448" stop="64917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68135" g_stop="67889" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="280" r_length="247" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67888" i_stop="66906" i_length="983">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66905" g_stop="66775" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="411" r_length="131" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66774" i_stop="65870" i_length="905">
            <donor d_prob="0.422" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65869" g_stop="65636" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="646" r_length="235" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65635" i_stop="65327" i_length="309">
            <donor d_prob="0.969" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65326" g_stop="65217" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="756" r_length="110" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E460959" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68135" e_stop="67889"/>
          <exon e_start="66905" e_stop="66775"/>
          <exon e_start="65869" e_stop="65636"/>
          <exon e_start="65326" e_stop="65217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAATTTCAAGTTTTTTGAGGATTTGGTTATTTGTATTAACTTTGGATATTTTGATTAATATTGTAAATGGACAGCCTTTAGTTCCAGCATTATTTATTTTTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTATCAAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAAAAGATACCAACTGGAAGATTTTGCAATGGAAAACTTGCGTCAGACTTCACGGGTACTTATTTTTCTTCGATTTAAGATATATATATCGACAGTTTAATTTTATAAAACGTATACTAGAAGTAGTTTTATATGTTGTACGGTACATATTAGTTGTCATATTTATTTACTCTACTATGGAGTAACATTTTAAAAATGTATTTTTCATTATATTGATATGCGAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTTGAATACTTAATTTTTTTTCTTTAAAATATAATTGATGTAATTTAATTTAACTTTACACATAGTCAAATTAACTTTCGAAAAATGTAACACGACAAATAAAAGTGAACAGATGGAATACATATGTAAAATATTAATTAACTCATCTCCTCTTACTAATATACTCTTTTCTTTTATTAAATTTTGTAAACATTTTTTTTTGAAAATCTCTCTTCTTTTTTTTTGTTTGTTTTGTACGCTTAAAATGACAAAAAGTGGTGGAACTATCAAAGAATATTCAACCCTTTTATCCATTTGGCAAAGAAGCCATTGCTATTAGTAAAACACAAAATTTAGCGACGGATCAATTTTGTAGCTTTACAATAACTTTTATAAGGTAATTTCACAGATTGACGAATTAAGGACAATTTATTTGAAAATTATGTAAGCTACGAGATTTTTAACGAAATATTTACTAAGAATTTTTGTATAATTGATCTTATATTATACTAAATTAAAACTTAAATCACTTAAAAGCAAATATAATGCAACAAGCCAACAATCATGAAGTATAGGTTTCGAGTTTGAATTTTTGAGAATAAAAAAGACCTAATTAGAAATGCTGATAAATATCTTTAAAAAGCAAATGTAATGTAACAAGTCGAGTTTGAATCTCTGAGAATAAAAAGAATCTTGTTGAAAATACTGACCTTATATATTGTGAGAATTCATTAATTAAATTTGAGTGAGAAATATATATTATTAAAAAAACTAATGTTTGTCCTTTGTGTTGCATAATACAGCTGAGAATCTTGGGTTTACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGGAAAAATCTTTTGATTGGAGCCAATTTTGCCTCTGGATCATCTGGTTACTATGACACTACTGCTAGGCTATATGTAAGTAACTGTAGTTTGGGAAAAGGGTTTGAAATATATTTAAACTTTAATCGATATTAATGTTATGATATCAAATTTTATAGAGTATCTTTTATCTATATCCTATTTAATATTGTATTTTAAAGGTATATATGTGTTCATGTGGACATTATAAATATTGCGTCATTTTAAATAGTAATATGTCCATGTGGACACATATATGTATACCTTTAAAATACATTTTTAAAAAGTGCAGGTGATAAAAAGTCTTTCATAAGGTTCGATATCGTAATAGCATTTTCGGTCAAAATTAAAGTAGTTTTTAAACCCTTTTCCCTTTTAGTTCAAACTTTAAAAATAAAATTGACTTTGGTAGAAAGCACTTTATTCTCGAAATGGGCATCTGAAACTGAGTGATAAAACAAATTAAAAGGAAAAAAAACTCACACTTCTCTTTTCTAATTTATGTGATAATATTTTATTTTTAATCAATTTTAAAAAAGAATAATCTAAATTTAGAAAAAATTGAGCTTAAAATTTTCATTTTATCCTTAATAGGAAGCTTTTGTTTTCATACAAAATGCTTTAGAACCATACAAAAATAATAACATGATTTAAATTTTATTTTTTCTCAAAAGTTCCTTTTAAAATAAATAAATAAATAAATTATGTGTCTAGTCAAATCTATCACATAAATTAAAATCGAGAAAATATTATCTCCATTCATTTTTACTTGTCATAATTTTCTTTTTTTAGAGTCAAATAATAAAGAGTTTTAACTAATATTTTACGATGTATTTTTTCATTGATATGTAAAAAATGCAATTTAAAGTACTTTTATATATTTTTAAAATATCTAAATTTTTAATTTAAAATATCAAATTAATATAATCTAATTTAACACTAATCTATTTTTTTTTTATCAGGATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATATCAAAAGAAATTGGTGGTAATTGCAGGGAAATTAAATGCTTCATCAATAACCAATGCTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCTTTGCTCTACAAAGTTTATACTCCAGATCAATTCTCAGATATCCTCATCAAGTCATACACT-AAATTTATATTGGTATATTCTTTTTCCTCTTTATTTTTCGAAAAACAACCTCTCTACGATTTATATTCATAAGACAGGAATAAGGTCTGTATTTTATATACACATTATCTTCTTCAGACTCTACCAATAGAATTACACAGAATATATTATACAAGAAGTAACTTGTTATAACAATTACAAGACAACAAGTGATCTGATGGTATAAAAGTTTCTTAAGTTAATAATGTATATAACTTAAAAATTATTTTTAATAAATTTAAATTATATATACTGACAATATAATAAGTTTTTTTAAAAAAATTGTTGTGTTGTGGCTGATAGGAATTGTATGGATTAGGAGCAAGAAAGATTGGAGTGACAACAGTACCACCAATTGGATGTTTACCAGCATCAATTACAATATTTGGCAAAGACAACAATAGTTGTGTCAA</genome_strand>
        <mrna_strand>ATGGGAATTTCAAGTCTTTTGAGGATTTATTTATTTGTATTTGCCTTGGATATTTTGATTAATATTGTTAATGGGCAGCCTTTAGTTCCAGCATTATTTATTTTTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTGTCAAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAACAAATACCAACTGGAAGATTTTGCAATGGAAAACTTGCCTCAGATTTCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAATCTTGGGTTCACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGCAAAAATCTTTTGATTGGAGCCAATTTTGCCTCAGGTTCATCTGGTTACTATGACACTACTTCTAGGCTATAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATACCAGAAGAAATTGGTGGTAATTGCAGGGAAGTTAAATGCTACATCAATAATCAATGGTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCATTGCTCTACAAAGTTTACACTCCAGATCAATTCTCAGATATCCTCATCAAGTCCTACACTAAAATTTATATTG.....................................................................................................................................................................................................................................................................................................................GAATTGTATGGATTGGGAGCAAGAAAGATTGGAGTGACAACAGTACCACCAATTGGATGTTTACCAGCATCCATTACAATATTTTGGCAAGATAACAACAATTGTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459044" ref_strand="+" ref_description="SGN-E459044 [cPRO-33-M13]">
      <seq>attatatctattttaaaaaattattttctgtgatgggaatttcaagtcttttgaggatttatttatttgtatttgccttggatattttgattaatattgttaatgggcagcctttagttccagcattatttatttctggagattcagttgttgatgcaggaaataataattatcttaaaacaattgtctaggcaaattttcctccttatggaagagattttcctaaacaaataccaactggaatattttgcaatggaaaacttgcctcagatttcacagctgagaatcttgggttcacttcatatccaccagcttatctcagcaagaaagccaaaggcaaaaatcttttgattggagccaattttgcctcaggatcatctggttactatgacactacttctaggctatatgatgcaattcctttgagcaaacaacttgaatattacaaagaataccagaagaaattggtggtaattgcatggaagttaaatgctacatcaataatcaatggttcaattcacttaatcagtgctggaagtagtgattttgttcagaattattatattaatccattgctctacaaagtttacactccagatcaattctcatatatcctcatcaagtcctacactaaatttatattggaattgtatggattgggagcaagaaagattggagtgacaacagtaccaccaattggatgtttaccagcatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="68448" stop="64953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68135" g_stop="67889" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="279" r_length="247" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67888" i_stop="66906" i_length="983">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66905" g_stop="66775" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="410" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66774" i_stop="65870" i_length="905">
            <donor d_prob="0.422" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65869" g_stop="65636" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="644" r_length="234" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65635" i_stop="65327" i_length="309">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65326" g_stop="65253" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="718" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E459044" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68135" e_stop="67889"/>
          <exon e_start="66905" e_stop="66775"/>
          <exon e_start="65869" e_stop="65636"/>
          <exon e_start="65326" e_stop="65253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAATTTCAAGTTTTTTGAGGATTTGGTTATTTGTATTAACTTTGGATATTTTGATTAATATTGTAAATGGACAGCCTTTAGTTCCAGCATTATTTATTTTTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTATCAAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAAAAGATACCAACTGGAAGATTTTGCAATGGAAAACTTGCGTCAGACTTCACGGGTACTTATTTTTCTTCGATTTAAGATATATATATCGACAGTTTAATTTTATAAAACGTATACTAGAAGTAGTTTTATATGTTGTACGGTACATATTAGTTGTCATATTTATTTACTCTACTATGGAGTAACATTTTAAAAATGTATTTTTCATTATATTGATATGCGAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTTGAATACTTAATTTTTTTTCTTTAAAATATAATTGATGTAATTTAATTTAACTTTACACATAGTCAAATTAACTTTCGAAAAATGTAACACGACAAATAAAAGTGAACAGATGGAATACATATGTAAAATATTAATTAACTCATCTCCTCTTACTAATATACTCTTTTCTTTTATTAAATTTTGTAAACATTTTTTTTTGAAAATCTCTCTTCTTTTTTTTTGTTTGTTTTGTACGCTTAAAATGACAAAAAGTGGTGGAACTATCAAAGAATATTCAACCCTTTTATCCATTTGGCAAAGAAGCCATTGCTATTAGTAAAACACAAAATTTAGCGACGGATCAATTTTGTAGCTTTACAATAACTTTTATAAGGTAATTTCACAGATTGACGAATTAAGGACAATTTATTTGAAAATTATGTAAGCTACGAGATTTTTAACGAAATATTTACTAAGAATTTTTGTATAATTGATCTTATATTATACTAAATTAAAACTTAAATCACTTAAAAGCAAATATAATGCAACAAGCCAACAATCATGAAGTATAGGTTTCGAGTTTGAATTTTTGAGAATAAAAAAGACCTAATTAGAAATGCTGATAAATATCTTTAAAAAGCAAATGTAATGTAACAAGTCGAGTTTGAATCTCTGAGAATAAAAAGAATCTTGTTGAAAATACTGACCTTATATATTGTGAGAATTCATTAATTAAATTTGAGTGAGAAATATATATTATTAAAAAAACTAATGTTTGTCCTTTGTGTTGCATAATACAGCTGAGAATCTTGGGTTTACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGGAAAAATCTTTTGATTGGAGCCAATTTTGCCTCTGGATCATCTGGTTACTATGACACTACTGCTAGGCTATATGTAAGTAACTGTAGTTTGGGAAAAGGGTTTGAAATATATTTAAACTTTAATCGATATTAATGTTATGATATCAAATTTTATAGAGTATCTTTTATCTATATCCTATTTAATATTGTATTTTAAAGGTATATATGTGTTCATGTGGACATTATAAATATTGCGTCATTTTAAATAGTAATATGTCCATGTGGACACATATATGTATACCTTTAAAATACATTTTTAAAAAGTGCAGGTGATAAAAAGTCTTTCATAAGGTTCGATATCGTAATAGCATTTTCGGTCAAAATTAAAGTAGTTTTTAAACCCTTTTCCCTTTTAGTTCAAACTTTAAAAATAAAATTGACTTTGGTAGAAAGCACTTTATTCTCGAAATGGGCATCTGAAACTGAGTGATAAAACAAATTAAAAGGAAAAAAAACTCACACTTCTCTTTTCTAATTTATGTGATAATATTTTATTTTTAATCAATTTTAAAAAAGAATAATCTAAATTTAGAAAAAATTGAGCTTAAAATTTTCATTTTATCCTTAATAGGAAGCTTTTGTTTTCATACAAAATGCTTTAGAACCATACAAAAATAATAACATGATTTAAATTTTATTTTTTCTCAAAAGTTCCTTTTAAAATAAATAAATAAATAAATTATGTGTCTAGTCAAATCTATCACATAAATTAAAATCGAGAAAATATTATCTCCATTCATTTTTACTTGTCATAATTTTCTTTTTTTAGAGTCAAATAATAAAGAGTTTTAACTAATATTTTACGATGTATTTTTTCATTGATATGTAAAAAATGCAATTTAAAGTACTTTTATATATTTTTAAAATATCTAAATTTTTAATTTAAAATATCAAATTAATATAATCTAATTTAACACTAATCTATTTTTTTTTTATCAGGATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATATCAAAAGAAATTGGTGGTAATTGCAGGGAAATTAAATGCTTCATCAATAACCAATGCTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCTTTGCTCTACAAAGTTTATACTCCAGATCAATTCTCAGATATCCTCATCAAGTCATACACTAAATTTATATTGGTATATTCTTTTTCCTCTTTATTTTTCGAAAAACAACCTCTCTACGATTTATATTCATAAGACAGGAATAAGGTCTGTATTTTATATACACATTATCTTCTTCAGACTCTACCAATAGAATTACACAGAATATATTATACAAGAAGTAACTTGTTATAACAATTACAAGACAACAAGTGATCTGATGGTATAAAAGTTTCTTAAGTTAATAATGTATATAACTTAAAAATTATTTTTAATAAATTTAAATTATATATACTGACAATATAATAAGTTTTTTTAAAAAAATTGTTGTGTTGTGGCTGATAGGAATTGTATGGATTAGGAGCAAGAAAGATTGGAGTGACAACAGTACCACCAATTGGATGTTTACCAGCATCAAT</genome_strand>
        <mrna_strand>ATGGGAATTTCAAGTCTTTTGAGGATTTATTTATTTGTATTTGCCTTGGATATTTTGATTAATATTGTTAATGGGCAGCCTTTAGTTCCAGCATTATTTATTTCTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTGTCTAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAACAAATACCAACTGGAATATTTTGCAATGGAAAACTTGCCTCAGATTTCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAATCTTGGGTTCACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGCAAAAATCTTTTGATTGGAGCCAATTTTGCCTCAGGATCATCTGGTTACTATGACACTACTTCTAGGCTATAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATACCAGAAGAAATTGGTGGTAATTGCATGGAAGTTAAATGCTACATCAATAATCAATGGTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCATTGCTCTACAAAGTTTACACTCCAGATCAATTCTCATATATCCTCATCAAGTCCTACACTAAATTTATATTG.....................................................................................................................................................................................................................................................................................................................GAATTGTATGGATTGGGAGCAAGAAAGATTGGAGTGACAACAGTACCACCAATTGGATGTTTACCAGCATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459556" ref_strand="+" ref_description="SGN-E459556 [cPRO-28-A2]">
      <seq>cttatccaatttttattatatctattttaaaaaaattattttctgtaatgggaatttcaagtcttttgaggatttatttatttgtatttgccttggatattttgattaatattgttaatgggcagcctttagttccagcattatttatttttggagattcagttgttgatgcaggaaataataattatcttaaaacaattgtcaaggcaaattttcctccttatggaagagattttcctaaacaaataccaactggaagattttgcaatggaaaacttgcctcagatttcacagctgagaatcttgggttcacttcatatccaccagcttatctcagcaagaaagccaaaggcaaaaatcttttgattggagccaattttgcctcaggttcatctggttactatgacactacttctaggctatatgatgcaattcctttgagcaaacaacttgaatattacaaagaataccagaagaaattggtggtaattgcagggaagttaaatgctacatcaataatcaatggttcaattcacttaatcagtgctggaagtagtgattttgttcagaattattatattaatccattgctctacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="68448" stop="65396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68135" g_stop="67889" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="294" r_length="247" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67888" i_stop="66906" i_length="983">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66905" g_stop="66775" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="425" r_length="131" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66774" i_stop="65870" i_length="905">
            <donor d_prob="0.422" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65869" g_stop="65696" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="599" r_length="174" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E459556" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68135" e_stop="67889"/>
          <exon e_start="66905" e_stop="66775"/>
          <exon e_start="65869" e_stop="65696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAATTTCAAGTTTTTTGAGGATTTGGTTATTTGTATTAACTTTGGATATTTTGATTAATATTGTAAATGGACAGCCTTTAGTTCCAGCATTATTTATTTTTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTATCAAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAAAAGATACCAACTGGAAGATTTTGCAATGGAAAACTTGCGTCAGACTTCACGGGTACTTATTTTTCTTCGATTTAAGATATATATATCGACAGTTTAATTTTATAAAACGTATACTAGAAGTAGTTTTATATGTTGTACGGTACATATTAGTTGTCATATTTATTTACTCTACTATGGAGTAACATTTTAAAAATGTATTTTTCATTATATTGATATGCGAAAAATTGTAATTTATAGTACTTTTCATATAGTTTTTGAATACTTAATTTTTTTTCTTTAAAATATAATTGATGTAATTTAATTTAACTTTACACATAGTCAAATTAACTTTCGAAAAATGTAACACGACAAATAAAAGTGAACAGATGGAATACATATGTAAAATATTAATTAACTCATCTCCTCTTACTAATATACTCTTTTCTTTTATTAAATTTTGTAAACATTTTTTTTTGAAAATCTCTCTTCTTTTTTTTTGTTTGTTTTGTACGCTTAAAATGACAAAAAGTGGTGGAACTATCAAAGAATATTCAACCCTTTTATCCATTTGGCAAAGAAGCCATTGCTATTAGTAAAACACAAAATTTAGCGACGGATCAATTTTGTAGCTTTACAATAACTTTTATAAGGTAATTTCACAGATTGACGAATTAAGGACAATTTATTTGAAAATTATGTAAGCTACGAGATTTTTAACGAAATATTTACTAAGAATTTTTGTATAATTGATCTTATATTATACTAAATTAAAACTTAAATCACTTAAAAGCAAATATAATGCAACAAGCCAACAATCATGAAGTATAGGTTTCGAGTTTGAATTTTTGAGAATAAAAAAGACCTAATTAGAAATGCTGATAAATATCTTTAAAAAGCAAATGTAATGTAACAAGTCGAGTTTGAATCTCTGAGAATAAAAAGAATCTTGTTGAAAATACTGACCTTATATATTGTGAGAATTCATTAATTAAATTTGAGTGAGAAATATATATTATTAAAAAAACTAATGTTTGTCCTTTGTGTTGCATAATACAGCTGAGAATCTTGGGTTTACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGGAAAAATCTTTTGATTGGAGCCAATTTTGCCTCTGGATCATCTGGTTACTATGACACTACTGCTAGGCTATATGTAAGTAACTGTAGTTTGGGAAAAGGGTTTGAAATATATTTAAACTTTAATCGATATTAATGTTATGATATCAAATTTTATAGAGTATCTTTTATCTATATCCTATTTAATATTGTATTTTAAAGGTATATATGTGTTCATGTGGACATTATAAATATTGCGTCATTTTAAATAGTAATATGTCCATGTGGACACATATATGTATACCTTTAAAATACATTTTTAAAAAGTGCAGGTGATAAAAAGTCTTTCATAAGGTTCGATATCGTAATAGCATTTTCGGTCAAAATTAAAGTAGTTTTTAAACCCTTTTCCCTTTTAGTTCAAACTTTAAAAATAAAATTGACTTTGGTAGAAAGCACTTTATTCTCGAAATGGGCATCTGAAACTGAGTGATAAAACAAATTAAAAGGAAAAAAAACTCACACTTCTCTTTTCTAATTTATGTGATAATATTTTATTTTTAATCAATTTTAAAAAAGAATAATCTAAATTTAGAAAAAATTGAGCTTAAAATTTTCATTTTATCCTTAATAGGAAGCTTTTGTTTTCATACAAAATGCTTTAGAACCATACAAAAATAATAACATGATTTAAATTTTATTTTTTCTCAAAAGTTCCTTTTAAAATAAATAAATAAATAAATTATGTGTCTAGTCAAATCTATCACATAAATTAAAATCGAGAAAATATTATCTCCATTCATTTTTACTTGTCATAATTTTCTTTTTTTAGAGTCAAATAATAAAGAGTTTTAACTAATATTTTACGATGTATTTTTTCATTGATATGTAAAAAATGCAATTTAAAGTACTTTTATATATTTTTAAAATATCTAAATTTTTAATTTAAAATATCAAATTAATATAATCTAATTTAACACTAATCTATTTTTTTTTTATCAGGATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATATCAAAAGAAATTGGTGGTAATTGCAGGGAAATTAAATGCTTCATCAATAACCAATGCTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCTTTGCTCTACAAA</genome_strand>
        <mrna_strand>ATGGGAATTTCAAGTCTTTTGAGGATTTATTTATTTGTATTTGCCTTGGATATTTTGATTAATATTGTTAATGGGCAGCCTTTAGTTCCAGCATTATTTATTTTTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTGTCAAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAACAAATACCAACTGGAAGATTTTGCAATGGAAAACTTGCCTCAGATTTCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAATCTTGGGTTCACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGCAAAAATCTTTTGATTGGAGCCAATTTTGCCTCAGGTTCATCTGGTTACTATGACACTACTTCTAGGCTATAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATACCAGAAGAAATTGGTGGTAATTGCAGGGAAGTTAAATGCTACATCAATAATCAATGGTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCATTGCTCTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242357" ref_strand="+" ref_description="SGN-E242357 [cLEE-3-K5]">
      <seq>gatcatacgtctacaagttgtcatcttcggatagatgcaagagcattcctcttcaaatcgacagctccgcgtatggaagtgacaacgggtgtttgaagggtggagtacactttgttgatggcgacgagagtgtaccggtcgtgagcgccggcttcatgtgcgcgaaaggttggcgaggcaaaacgcgtttcaacccctcgggcatctcaacatacataagggaacaccagcacaaggctccgtcgagtctgctagaagggagaggcacggagagtggtgctcatgttgacatcatgggaaatgtcgccttcatcgaggatgtccttcgactcgctggtggtgccaccggtgcagagttgggtggcgatagaatctactcggatattatgaaaatgtcagagaggataaatattcgtctttaacgtgtgataatacgcgcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="72091" stop="71051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71791" g_stop="71351" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E242357" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71791" e_stop="71351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATACGTCTACAAGTTGTCATCTTCGGATAGATGCAAGAGCATTCCTCTTCAAATCGACAGCTCTGCGTATGGAAGTGACAACGGGTGTTTGAAGGGTGGAGTACACTTTGTTGATGGCGACGAGAGTGTACCGGTCGTGAGCGCCGGCTTCATGTGCGCGAAAGGTTGGCGAGGCAAAACGCGTTTCAACCCCTCGGGCATCTCAACATACATAAGGGAACACCAGCACAAGGCTCCGTCGAGTCTGCTAGAAGGGAGAGGCACGGAGAGTGGTGCTCATGTTGACATCATGGGAAATGTCGCCTTCATCGAGGATGTCCTTCGACTCGCTGGTGGTGCCACCGGTGCAGAGTTGGGTGGCGATAGAATCTACTCGGATATTATGAAAATGTCAGAGAGGATAAATATTCGTCTTTAACGTGTGATAATACGCGCGA</genome_strand>
        <mrna_strand>GATCATACGTCTACAAGTTGTCATCTTCGGATAGATGCAAGAGCATTCCTCTTCAAATCGACAGCTCCGCGTATGGAAGTGACAACGGGTGTTTGAAGGGTGGAGTACACTTTGTTGATGGCGACGAGAGTGTACCGGTCGTGAGCGCCGGCTTCATGTGCGCGAAAGGTTGGCGAGGCAAAACGCGTTTCAACCCCTCGGGCATCTCAACATACATAAGGGAACACCAGCACAAGGCTCCGTCGAGTCTGCTAGAAGGGAGAGGCACGGAGAGTGGTGCTCATGTTGACATCATGGGAAATGTCGCCTTCATCGAGGATGTCCTTCGACTCGCTGGTGGTGCCACCGGTGCAGAGTTGGGTGGCGATAGAATCTACTCGGATATTATGAAAATGTCAGAGAGGATAAATATTCGTCTTTAACGTGTGATAATACGCGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356257" ref_strand="+" ref_description="SGN-E356257 [cTOS-20-J8]">
      <seq>aaaacacttagaaaatctgaaattgggtactgaaaatcgactctctgaacttcgtgacggaatgacaggacggaccatcacaggcgtgacggaccgtcatagattgttcagtggaaattgactctctgacccttgcgacgacctgcaggacggaccgtcacagtcacgacggcccgtcacaggttgcgcaaatcccaggcagaatcggatttccttacacgttttaagggacgtttttggactattctttccttaattatagatttcgtgggtttatattaataactcaaattcttggggttaaaagaggtaaccctaagttaattagtggggtattattgccatcttttattcttaattatatgttaatttggggtaaaagaaagagggttttgaaacgagaccctgcgatggtccgtcgtgcccatgacggtccgtcgtggggtccgtcgcttctgccagtttttccagaaataaagtctgctgctcaaaacgactaaacgggtcgttacattatttgactctatcactttaattttctagttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="107859" stop="94911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107559" g_stop="107170" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107169" i_stop="95340" i_length="11830">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95339" g_stop="95225" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="504" r_length="115" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E356257" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107559" e_stop="107170"/>
          <exon e_start="95339" e_stop="95225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGGACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTT-GGTGGAAATATTGGGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCATATCCCAGGTAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGTCATCTTTTATTCTTAATTATATACTAA-TTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAATAGAAAGAACGAAGAGAGACAGAAAAAGAAAGAGAACGAGTAGAGAGAGAGAGAAACGAAGAGGATAGCAAGGATTTTGAGAAGATAGCTTGTTGATCGCAATTCTTCGGTGGAGGTAGGTTATGGTTATTTCATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATTGTAAACCTTCTATATGCTTAATTGTATGCTTGCATGAATGATGTGATTATGTAATTGTGAATAAATAAGCATGATGAAGCTATTGAATCTCAAATCTTGAAAAGAAACCCTAATCTACTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATTGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCATGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGAAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCTCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAGCTATAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCCTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCACCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACCTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTATTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAATCGCGCCCTGGATTTGGGTCGTGACATAGCCAATGCCTAAAAATTATATAATATTTAGGTGTAAGTTTACATTACTTAGAACAATACGTAGATATCTTTTGCTATTTCATGCTATATTATTCTAAAATTTGGTTTTGCAGTGCAAATTTTGTCTTTGATTTGAATATCATAGTTTAAATTTCAGATATTTGTATTCTAATGTTTAAAATATGTATTCAAACTTCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAACTCCTCAATTTTTTATCTTCTCCAATAAATCTTGAGTTATATATATCATGAAAAAATATTTTATATTTATCAATTATCTCATGTTTGATGTGATTTAGTGACATTTATCAGGTAACTTTTTTTTAATTAATTTTTTTTAAAATTATATATTAATATATTGTAAATATTTTTTGTTTGCCAATTGTCTTATGTTTGATGTGATCACGGACATTTATCAGGTACCTTTTTTAATTATATTTTTTAAAATTTATATATTAATATATTGTAAATATTTTTTTGTTTACCAATTATCTCATGTTTTATGTGAATTACTGACATTTATTCGATACCTTTTTAACTTTTTTTTAAAAAAAAATTATATATTAATATATTGTAAGGTCTTGATTCTTAAGAATGATTTTTGCATCATAATTTTATTTGTAACTAAAAAGTTATCTTTTTATTCATTTTATTGTTATACAAAAATGAATGAATGTCTCAATTATTACTTTTCATTTGTTTATTTTCTTTAAAATAAGAGTTTAATTATTTTTATTTCATTACCTTATATAAATATTGACAATTATAACTTCTAAATTAATAGTCAATGACTGTACTTTGAACATATTTTTTTGTTACTTGCACTTTATAGATTCGGATCTTTCAATTCTTCATAGATGTAGATCTCGAATTTATGAATGAGGATATTTTCAAAACTCACACAGAAAAAAGGAAGTGAGTTCATTACTAAAAGTATACAGAATTTTGTGGATTGTGGATGAAAATATTTAAATGTAAGGATTTGGGTTGCTTTTATTTGGGGTTTTTGTGAGATTTATATAATCACTCTTAATCTATCGATGTCGACTTTTTATGTAGGTTTTTTTTGTTAGACTTAATTGTATGATTTTTTTATTTTTCCATTATTTGCTAATACTAAATGATTTTTATCTTATGACTTTTTTTAATTAATAATTATAATTATAGAATTAGAATGATTTTTTATGATTTAAAATAGTTAAAGAAAATTTCAGTACTTTTCTATATGTTAAAAATAATAGCGGGGGTAATATTTTTCTTTTGGAGTTTTGTGTAGTGATAAAGTGTTATGTGATATGAAGAGATAAAGGCGAATTCAGAATTTAAATTTTATATATTTAATACTTAAAGTTTTTAGTATTAACTTTTGATTTTTTTAAGATTATGTTTTTGAAGATCGAATTTGTTTATGCGTCTAGTGTAAAAGCAAGTGATGTATAAATTTTTATATATTTAACGTTTAATAATTTAGAACTAATTTGTTATATATTTCACAATTTATTGTAATTTTAATGAATTCTTACATACAAATTTATGTATATCATGAATATACTAAAGTAGAAGAATATGCAATGATAAATTAGTTTCTGGATGGTGTGCTAAAAAAATGAGCATGTGGTAATCATTGTTATATATCCACAAAATTTAACATCAACATATTATTGTTGTATCTTCAAAAAATTTAACATATATTATATGCAAATTATTGAACGTTAAGTGTTTTAAATTTTAATTAACTAACAAAGTAATATATAAACTGTAATTTTAAAATAAATTTGTTGTCATCAATTAGTTTTGAATAATTCCTTTTCATTTCTCCTCAAATTTATTGTTAAGCTTTCATAGGAGGCTAACAAATATTTGTACTTTAATTTACTTACAATAAAAGAATATGCATAGTTTCTGTTAAACAGTATAATTTTACCGTTTATATTTTTAATGTCAATATTGTCACTTTTTTTTAGTTTATATTTTAGGATATATTTTCTTTTAAATTAAGCAAAAGAAAATCATTATACCACACACAAATTTAAGGAATTCTCTCTCTTTTTTTAATGAACTTTATTTTCTAATGACTAAGTTTTAGGAAATGAAAGGTAAACAATTAAATTAAAATCTAATTTATTTGGATTTGAAGACTATATAATTATTTCAAGGTTTAAAGAGAGGAAAGACAAAATAAAATGGGTCATCATATTTTTTAATGGGTTGGGTTTGGTGGGTGGATCACTAAATGGTTAAATTTATTTTTTAAAATTTTTGGTTTGTTATAAAATAATTAATATCAAAAAATTTTAATTAAAAAATAATTTAATAGATTGAGTGACTTTTTGAGGAAAGAGTGGATAATTGAGTGACTTTTGAGTTAAAATTCAAAGTTGAGTGACTTTTTGAGAAAATAGTGTATAGTTGAGTGACTTTTGAGTGAAAATTGAAAGTTAAGTGACTTTCTGAGAGAAGAGTGCATAGTTGAGTGACCATCTGAGGTATTAACTCAATTTTTTGAAATAGTAAAAAATCAATTTGTAAATCTAAAGATTTTTTTCTTAATCGCGCGAAGCATGGCGAAGTCTCCCAATTTTTCATATAATTAAGAATAAGGTCGTGAATATGTTGAAGTGAATATTAAAAATTATAACAAAATTGTTATTTTCCCCAAACATCTTCTTTTCTCTTAATCGACATCCATTTAACTTATCAACTTCATTTAACTAAATTTTTATCTTTATATCTTACTCACTAAAAAGCGATAAATAAATAAAATCATATTGTTTGTTAGCATTATTATTTTCTAACTAACAACCAAATTATCCTTGGCAACATTATTATAGTCTTTGCTACTTGCAACAATAAATATTTTTTGTTGAGCAGTATTTATCTATCACTTTCTTAAGCGCTGGCAATTCATGTTACACACATTATATAAGGTTAATACTTTTTTTTATTTTAATATGGTTTTTTGTTTTGACTTAATACGAATTTTAACAGAGTAAAAATAAATAAATAAATTATATTTTATAATTTTAAATTAAAGATACATAAAATATATAATTTTTATAATTTTTTATAATATTAAACATATTATGTGTAAAATTAAAACTTAAAATTATAAAAAAAAAAAAAGAGAGAGAGAAAAGAGGTTGTTGGCTTCATCAATAAGGGAATGATCAAATACACAAATTTAAGTTATATTGAAATTATAATTTCTAAATTAATTTATTTAATTTAAGAAACAGATAAAATAATTATAAATTAAATAGACTAAAATAAAATATCTAACAATCAGTTACATTATAAATTTTATTTCAAATTTAATTATGAAATACTATATTTATTCCGCCTACCAAACGATCCGCAGGAAATAAATGAGTTGTCCCTCTTTCATTTTCATCTTTTTAAAAAATTATGTACGTGTAGATATTTTTAAGTCTATATTTGAGAAACGATTGCCTTTATCATAATATATATTTTATAATCTATTAAATATTTTTGGGTTAGTTTTATTTTTTAATTAATTAATATTTAAAATATTTTTTTATTTGACTAACTAAATTTAAATACTTTTGTAATCTTATTACATATTGGAAACACACATAGGGTATTTTCAAAGCTTTTTCCGAATTTTTATTAAGGAGTCATATACTTTTACAAGAGTTTGAAACTGTTTATTATATCATGTATTCAGAGTATATCTAGATTTATTTATTTAAGCAAAAGGATATTTTTAAGATTATCATAACTCACAATTCAAAAATAAAACTAATAATTTACAAACATTTTCAATACTTCTCTCTAAATATATTTAAAGTCTTTGTGTTCTAAGTTCTCTGATCGTTGTTTGATCTTTAAATTTTTGAAGCTCACTCATTGTCATTTTTAAATATTTCAAATTCAATATAAATAAGAGGTTATTAAAGTCATTTTTTAAAAAATATTTTATAATCATTCAATTATTATTTTATTTTTATTATAAATTAAATGATCTATCACTATATAATATCTAATAAAACTTTTAAAGATACTCTAATTCTGTATCAGCATAAATTAATATTCAGAAAGTTATCATATATATAAAAAATGAATCAAAAGAGTTGAAGACTAATTGTCTCAAAATATAATGTATGAAAACGGATGGGGTTTTTTTAGACTTATTTAAGAGGACATTTTAATTTGACATAAATTTTTCCATGCAAATCAAATTTAATCAAATCTTAAAATAAATATTTAAATTAAATAGAAATAATAGTACTAATAAAGTGGTCTTTATTGATAAAATTATATTTTCGTTTACTTTTAGTTGTTATAGTTTCTTTTTTAGAGTTAAACTATGAAAATTCTGACAAACATTTTATAGTATATTTTTTAATCATATTGATATGAAAAAATTATAATTTATAATACTTTTTATAATCTTAAAATACTTATATCTTATATTTAATTATCGAATTAATATAATTTAATTTAATTTTAAAAAATTAATAATATTAATTTTAAAAAACGCAACATAACAAATAAAATTGAATAGAGGAATAACACTTTTTGCTAGAGAAGCACCGACACGCATTATGCCAAAATATGCACAAAAATAATTGTACTGCTCAACAAGTAAGCTGTTCTTACCCACTCTCACTCTCAGGCGCGTGGTATACACCTTTTACTCCTTAAGGTATCAAAGTACCGACAGTTTGTTACAAATGAAAACATGACTTATTAGATAATTTTGAATAATTAAGTGATTATTTAAGTAATAGACTTCTTAAGAAATTATAAAATAGAATGGTAATTATAAAATAGAATGGTAATTTAATTACTCTTTGAATATAATAAATATAATATCTTGAAAAATATAATAGAAAAATACCTATAATTAATAAAGATGAATTAAGAACTAAATGTAAAATTATTTATTAATTTTATTAAGTGGATAAGTATTGCGGAACATCTCAAAATAGTATAGTGAACAATTATTGTTGAACATATGGAATAATATATGAACAGGTTCTTTAAGTTGACTTCAATTGATATGTCTTTTTATTTTGAACATGCACGAATAATTAAACACTTAAAATTTGTATAAATTTGAATAATTACACACGCCTCTTACGTAACATTATACAAATCAGTTTTGATGTATCTCTCACGAATTACCATGTATGGCACATATATCTATTGCTTCTTTAACTTTATATAAATTTAAATATTTAATTACGCATACCTAAGCAGGAGTAAAAAAAATATGCCAGTTGAAACGTTATATTTAACGTGTATGTATTATGTCATCTAATACCTATTAGATATCTTGAAGTAGTGCATTGACAATTTCCTCAAGTACTTGCATAATCTTGAAAAATGTTCAAATTTAGCTAAAACTATTCGATTATTCTTATATTTGCCTATTTTTACCTTTTGGTCCACGAAAGCTTCATACTATTTTTAGTCGAATATTTGCCCCTGTCTATTGATCATCTAGCTTGACTCTTGACATTTAAAACGACAGAGCCTTTGTAGACAAACAAAAGATCCAAAGTTATCTCTAAACTCACATTTTGATTTATGTATATCGTTTGTAATAATTTGAAGCATATTTTTGAAGTTTGAACAACTCGTAATGTTAAAGTAAAATCTAAATACACTTTTACATGGCTTGACGAAATCCAAAGAATCCGGGGGTGTATTTGAACATTTTCCTTTGCGGAGGGGTGTGCGTAAATAAATAAATAAACGGGAAACTTTCACATATAACCACTTTAAAATAATTAATTATTCTTCATAGCTATAGTTTGATAATTACAATTTGTAGCTACATGATATATGGAGGAGAGAGGCGAGCAAGAATGGGAGAGAGAGGAGAGAGACGAGAGAGGCGAGAGAGAGGGGGGAAAGAGTGGGAGAAAGGTGAATTGTATATGTATATTGGTTAGATAATTGTATATTTTACATATGTATATATGGAAAGAGAGATTGAGAAATGGAGGAGAGAGGCGAGCGAGAGAGGGCAGAGAGTGGGAGAGAGGTAAGTTGTATATGTATATAATATTATATTATACATATGCATTTGTATAAATGACAAGCGAGATTGGGAGAGAGAGGATAGAGGCGAGCGAGTTTGATAGAGGAAGGAGAGAGGCAAGCGAGAGAGGATAAATAGTAGTAGTGAGATGAATTGTATATGTATATATATATATATTAAATAGCTGTATATTACACATATATATTTGTATATTCTAGCGAATTATACATATACAAACGTGACTAATTATACAAACTTGAAGTCAGTCCACGTGAATAATGTATAATGTTAGTCGCTATTGATAATTATAGCAAACTATAGCTATGATGAATAATTAAATAATATAAATATTTTGTTACGTAATTTTCCCTTAAAACAAAAAACTACAAAATGGGCCTTAGGCGGAGATATGAGCTTAGGCCCAATTGTATAGTCTTGGACCTTGCGGTAGGATGGATCTGCAAAATGGGCCTTTGGATTTATTTCAGAAATAACACCACTTTGCCGCTTGTAGCGTTATTATTTAAAACATAATCAGTTTTTAATAATTATTTAAATTTTAGTCAGTTTTAACTGCCGGTTAAACTTGAATTCAAGATGAATCTCCCCCACTACTCATCGTTTTTGGTTTGGTAATTCATATTGCTGTCTTAAATGATTTCGAGAGTCATGATGATATTATTAATGAGGGACGTTTATTTAATATTTTACTGAAATATATAATTGTTTTATCTAAATATTTAAATTATTAGATAAAGTATATTTTATTTGCTCGTAAGACATTAATTCTATTTAATTTTCACCACCCATAACATCAATTCTTGTGTCCATAGTCTCCTTTTTTAGGTAAATTGTCATTTTATACTTCAATAGCATGAAAAGGACGAAAATGAAAGCAATACAAAGTAAACACAAACACGTAATCTAGCAATTAACATAATAAACTAAAGGGTGTTAATACTCGATGAACTATTTAATAATGAAATAATTATGAGAATAAATCATTTAATTTATAAAATATATACGAAATGTATTGATTGTATATACTTATATCATATTATACATACACTCATAGTGAGTCATGGAGTCACGTGAAAGAATGAGGTGTACATGTATCAATTAATTTCAATCTTTTTTTATCAGTCTATATTGCGTGATTTTGCTTCTGACTAATGTACTGTATGACCTTGACGGTGCTTTTACGTCTCTAAATTATGGATCCGTCTTTATATATACTTTACTATTCATATAATATGTGTATTTTATTACACAATAAATATATAGAAACTTTAATTATGTTGTTAAACTAGTTAATCTAATGATACATATTTTTAATTTTCCTTATTAATTTATCTTGAAACAATATGATTATGTCTCTCTCTCTTTTTTAAGAGGATAACTATATATTATATCGGAATATAAGAAAATTTTGGAAAATGGTGACGTTCTAAAAGTGACTACTTTTCTTGTCAATTGGAAACTATTTATTTTATTTTTAACTTTATATATAAAAAAAGAAGTAGGTCAAAAATGGTGATGCACGACAAAATACATTTTTTTTTTGTTTCCATTCTTAAATTTGTTTTTTCGAAGTAACTTTCTCTTTATAAATACTTTTGTTATTTATATGTACATATTTTTGGATCAATCATAATCACATGGATTTTTTTTTTTGGAATCATTGAGATTTTTAAAAAAGAAATTGTGCATCAATTCAAAATTTTAAGATAATTAACTGAATAGTTTGTAAAACTTGTACAACTGAGAGATCGATTTTTTCAATTCACCTCAAATTGGAGGTCAATATATAAGTCTTAATTAATAAAAAAAAAAGGATCATTTTTTGGATGCTTTATTATTATTATTTTTTGAAAACGTAAATCTTTTTGTTGCTTGGTTTAAGATTATGATTTTGGTTAAAAAAAAGATTCTCCAAAGGTCAATTTTTGCATGTATATTATAAAAAAGTCGATCTCAAGAGGTCAATTTGTATTTTTTCTAAAAATGGGATTACTATAATTTGACATAAAAAAACATTTACCAAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATTCTAGTTAACGCATAAGAAAACATTTTTCCATGCGATATCATATCACCAGGGGCGGACCCACATGGTGTCCGCCGGGTGCTCGAGCACCCATTAACTTCGTTACGAAATATATATATCTATGTAGAAATCGATAGGTATTTGTATAAAATTAACATAGAACATCCAATGAATAAATCATATAGTTGGCCCAATGATTCTAGGATGAGTACTTAAGACTCTTTTAGTGTTGTTGTACCAAAGTTCGAATCTCATTGTTAACACATATTTTTTATTGTTTCACTTTAGAAATCCGCTTCATTATATGAAATCATGAGATGATATATAAAGCTTAATTCTTATGTGGCATAGTGACGTGTACAGACCCCCAAGTGAACAAGGACAAAACTTAAGGGGGTCAAAGTGATATTTTAGAAACTGAAGTAATGCAATAAATAGGGAGAAATTAATAAAAACTATATGACAAACTAGAATAATTGAAAATTATAATGAGGGCTAGATATATATCATAGGGACACATTAATGAGCAAATTTATTCTCCTTTCTTGTCACGACCCAAATCCGGGTCGTGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACGTTTCAATATAATATCAACAGAAAGTAATGCGGAAGACTTAAACTCATTAATAAAATCAATAACTATTATTATCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATGATCAAATTACTAAACTAAGAGTATTCTGAAAGCTAAAACAAGTAAAAGCTAGCCCATGCCGGAACTTCAAGGCATCAAGACATGAGGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAATAATGAAGACTGGCTAGACTTGCGGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAACAAAGAAGAAAACATAAAAGTAGGGGGTCAGTACAAACACAAGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATGTACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTTATTGTCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCCTTAATCTACGTGTCGGTTCGTGACACTCGATCCCCTAAATCTACGTGTCAGTTCGTGACACCCGATCCCCTAATTCTACGTATCGGTTTTTGACACCCGATCCCTTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATTCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACTACTACGTGTCGGGTCGTGACACCCGATCCCCTAATCTCCTTCTATCAATTCATCAACCCGATCCACATTCATGCAAGCATACAATCGAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACAAATATCGTAAGAGAAACCATAACCTACTTACACCGAAGATTAGTGATCAAGCAAGCAACTTTCCCAAAGCTTTGTGTTTTTCCCCTTCTTGAGCGTCTCTCTCTATCGATTCCCTTCTCTCTTTTTTTTTTGTTTTTTCTATTTTTCTTATTCAAACCCCCTTTCTTTTACCCTAATTAAAATGTAATTAAGTGTAAAAGATGAGAATAATAACCCACAATTTAACTCAAGATTACCTCTTTTATCCCCCAAGAAATTGAGTTATTCATATAAACCCACGAAATATGTAATTATAGCAGGAATAGCCCAAAACGCCCCTTTAAAACTTTACCAGAAATTCGACTCCGACTGGGATTACGCAACCTGTGACGGGCCGTCGTGCCTGTGACGGTCCGTCCTGCTGCTCCGTTACAGAGTTCAGAGACTGAAATTCTCTGAAGAGTCTGTGATGGTCCGTCACGCCTGTGACGGTCCGTCCTACACTTTCGTCACGAAGTTCAGAGAGTCGATTTCAGTACCCAAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCCCATGACGATCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAG</genome_strand>
        <mrna_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGACAGGACGGACCATCACAGGCGTGACGGACCGTCATAGATTGTTCAGTGG-AA-ATTGACTCTCTGACCCTTGCGACGACCTGCAGGACGGACCGTCACAGTCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTT-GGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATGTTAATTTGGGGTAAAAGAAAGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="96867" stop="95896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96567" g_stop="96231" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96567" e_stop="96231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATGTACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTTATTGTCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCCTTAATCTACGTGTC-GGTTCGTGACACTCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="95941" stop="96778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96241" g_stop="96478" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96241" e_stop="96478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTAAGGGGATCGGAGTGTCACGTACCGACACAAGAGAATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGACAATAAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGACATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="95942" stop="97019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96242" g_stop="96719" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96242" e_stop="96719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTAAGGGGATCGGAGTGTCACGTACCGACACAAGAGAATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGACAATAAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGACATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TACATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTTGTG-TTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACCGCAAGTCTAGCCAGTCTTCATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGA-CCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="106675" stop="105841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106375" g_stop="106141" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106375" e_stop="106141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCTCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAGCTATAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCCTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTT-TCTTCTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="107161" stop="105931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106861" g_stop="106577" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106576" i_stop="106462" i_length="115">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106461" g_stop="106231" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="515" r_length="231" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106861" e_stop="106577"/>
          <exon e_start="106461" e_stop="106231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTAC-TTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATTGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCATGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGAAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCTCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAGCTATAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCCTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAG-A-ATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAG...................................................................................................................GATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331858" ref_strand="+" ref_description="SGN-E331858 [cTOD-7-L1]">
      <seq>gctctcctccctcctttttcttgctttaaatacattcaccgtcaaaaacctttacatacatatcgattcacttcaatatagagagagaaactgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110008" stop="112571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110308" g_stop="110720" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="506" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112271" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="597" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E331858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110308" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCCTCCCTCCTTTTTCTTGCTTTAAATACATTCACCGTCAAAAACCTTTACATACATATCGATTCACTTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAG</genome_strand>
        <mrna_strand>GCTCTCCTCCCTCCTTTTTCTTGCTTTAAATACATTCACCGTCAAAAACCTTTACATACATATCGATTCACTTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331769" ref_strand="+" ref_description="SGN-E331769 [cTOD-7-G15]">
      <seq>gctctcctccctcctttttcttgctttaaatacattcaccgtcaaaaacctttacatacatatcgattcacttcaatatagagagagaaactgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110008" stop="112352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110308" g_stop="110720" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="506" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112190" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="516" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E331769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110308" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCCTCCCTCCTTTTTCTTGCTTTAAATACATTCACCGTCAAAAACCTTTACATACATATCGATTCACTTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACT</genome_strand>
        <mrna_strand>GCTCTCCTCCCTCCTTTTTCTTGCTTTAAATACATTCACCGTCAAAAACCTTTACATACATATCGATTCACTTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462903" ref_strand="+" ref_description="SGN-E462903 [cPRO-13-E9]">
      <seq>gattcacttcaatatagagagagaaattgaaaaaatatctttaaaaaattgtagtgagagaggattagcagtaatcggaaatggcaggaagagtagatctggacggtaatcccataaaacagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttttgtcggagactcctcataaggtgctagccgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatagaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgtactccagcagattataacactcgtccacttgatacaatttacagcaatttcgttgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110072" stop="112541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110372" g_stop="110720" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="440" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112241" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="501" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E462903" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110372" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCACTTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATG</genome_strand>
        <mrna_strand>GATTCACTTCAATATAGAGAGAGAAATTGAAAAAA-TATCTT-TAAAAAATTGTAGTGAGAGAGGATTAGCAGTAATCGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATAAAACAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTTTGTCGGAGACTCCTCATAAGGTGCTAGCCGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATAGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGTACTCCAGCAGATTATAACACTCGTCCACTTGATACAATTTACAGCAATTTCGTTGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365666" ref_strand="+" ref_description="SGN-E365666 [cLPT-8-C1]">
      <seq>gaggcttcaatatagagagagaaactgaaaaagtatcttcaaaaaaattgtagtgagagaggatttgcagtaatcggagatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatctatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacaccagcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110078" stop="112336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110374" g_stop="110720" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112036" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="432" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E365666" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110374" e_stop="110720"/>
          <exon e_start="111951" e_stop="112036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCT</genome_strand>
        <mrna_strand>GAGGCTTCAATATAGAGAGAGAAACTGAA-AAAGTATCTTCAAAAAAATTGTAGTGAGAGAGGATTTGCAGTAATCGGAGATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATCTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCAGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328705" ref_strand="+" ref_description="SGN-E328705 [cTOC-23-G14]">
      <seq>ttcaatatagagagagaaactgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctganggtgcggagaatggcttagagttcactattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110079" stop="114347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110379" g_stop="110720" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="435" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="543" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="658" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114047" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="694" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E328705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110379" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTG</genome_strand>
        <mrna_strand>TTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGANGGTGCGGAGAATGGCTTAGAGTTCACTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325720" ref_strand="+" ref_description="SGN-E325720 [cTOC-15-H23]">
      <seq>ttcaatatagagagagaaactgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110079" stop="114213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110379" g_stop="110720" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="435" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="543" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113913" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="643" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E325720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110379" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTG</genome_strand>
        <mrna_strand>TTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317759" ref_strand="+" ref_description="SGN-E317759 [cTOA-30-O13]">
      <seq>tcaatatagagagagaaactgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaagctggtctatgctgagggtgcggagaatggcttagagttcactattgtaggccatttaactggattggtcctangatggattttattcccggcattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110080" stop="114401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110380" g_stop="110720" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="434" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="542" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="657" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114101" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="746" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E317759" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110380" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATG</genome_strand>
        <mrna_strand>TCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAAGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGT-AGGCCATTTAACTGGATTGGTCCTANGATGGATTTTATTCCCGGCATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459367" ref_strand="+" ref_description="SGN-E459367 [cPRO-27-L19]">
      <seq>caatatagagagagaaattgaaaaaatatctttaaaaaattgtattgagagaggattagcagtaatcggaaatggcaggaagagtagatctggacggtaatcccataaaacagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttttgtcggagactcctcataaggtgctagccgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatagaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgtactccagcagattataacactcgtccacttgatacaatttacagcaatttcgttgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttacgggaaaaccataggtgcctttttacccgaagacagcccactgcggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcgtgtgcaaaacaattgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttnactggattggtcctaggatggatttcattcctggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110081" stop="114396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110381" g_stop="110720" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="431" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="539" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="654" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114096" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="739" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E459367" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110381" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCAT</genome_strand>
        <mrna_strand>CAATATAGAGAGAGAAATTGAAAAAA-TATCTT-TAAAAAATTGTATTGAGAGAGGATTAGCAGTAATCGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATAAAACAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTTTGTCGGAGACTCCTCATAAGGTGCTAGCCGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATAGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGTACTCCAGCAGATTATAACACTCGTCCACTTGATACAATTTACAGCAATTTCGTTGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTACGGGAAAACCATAGGTGCCTTTTTACCCGAAGACAGCCCACTGCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCGTGTGCAAAACAATTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTNACTGGATTGGTCCTAGGATGGATTTCATTCCTGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463697" ref_strand="+" ref_description="SGN-E463697 [cPRO-15-B12]">
      <seq>caatatagagagagaaattgaaaaaatatctttaaaaaattgtagtgagagaggattagcagtaatcggaaatggcaggaagagtagatctggacggtaatcccataaaacagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttttgtcggagactcctcataaggtgctagccgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatagaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgtactccagcagattataacactcgtccacttgatacaatttacagcaatttcgttgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttacgggaaaaccataggtgcctttttacgcgaagacagcccactgcggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcgtgtggcaaacattgattgagaggctggtctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110081" stop="114228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110381" g_stop="110720" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="431" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="539" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="653" r_length="114" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E463697" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110381" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG</genome_strand>
        <mrna_strand>CAATATAGAGAGAGAAATTGAAAAAA-TATCTT-TAAAAAATTGTAGTGAGAGAGGATTAGCAGTAATCGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATAAAACAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTTTGTCGGAGACTCCTCATAAGGTGCTAGCCGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATAGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGTACTCCAGCAGATTATAACACTCGTCCACTTGATACAATTTACAGCAATTTCGTTGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTACGGGAAAACCATAGGTGCCTTTTTACGCGAAGACAGCCCACTGCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCGTGTGGCAAACA-TTGATTGAGAGGCTGGTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269051" ref_strand="+" ref_description="SGN-E269051 [cLEI-16-L23]">
      <seq>caatatagagagagaaactgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110081" stop="114202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110381" g_stop="110720" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="433" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="541" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113902" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="630" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E269051" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110381" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAA</genome_strand>
        <mrna_strand>CAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313802" ref_strand="+" ref_description="SGN-E313802 [cTOA-17-N22]">
      <seq>aatattttgagagaaactgaaaaaagtgtcttatgtggaatttcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccatatgtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110090" stop="114131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110382" g_stop="110720" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="432" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="540" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113831" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="558" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E313802" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110382" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTG</genome_strand>
        <mrna_strand>AATATTTTGAGAGAAACTGAAAAAAGTGTCTTATGTGGAATTTCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATATGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256027" ref_strand="+" ref_description="SGN-E256027 [cLEG-35-L9]">
      <seq>agagagagaaactgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110087" stop="114132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110387" g_stop="110720" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="427" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="535" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113832" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="554" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E256027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110387" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGC</genome_strand>
        <mrna_strand>AGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312336" ref_strand="+" ref_description="SGN-E312336 [cTOA-5-M3]">
      <seq>gagagagaaactgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110088" stop="114160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110388" g_stop="110720" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="426" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="534" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113860" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="581" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E312336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110388" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTT</genome_strand>
        <mrna_strand>GAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408501" ref_strand="+" ref_description="SGN-E408501 [PPI-11-E12]">
      <seq>agagagagattgaaaaaatatctttaaaaaattgtagtgagagaggattagcagtaatcggaaatggcaggaagagtagatctggacggtaatcccataaaacagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttttgtcggagactcctcataaggtgctagccgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatagaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgtactccagcagattataacactcgtccacttgatacaatttacagcaatttcgttgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttacgggaaaaccataggtgcctttttacccgaagacagcccactgcggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcgtgtgcaaaacaattgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttaactggattggtcctnagatggatttcattcctggcatcgatggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110089" stop="114406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110389" g_stop="110720" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="423" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="531" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="646" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114106" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="741" r_length="95" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E408501" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110389" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCT</genome_strand>
        <mrna_strand>AGAGAGAGATTGAAAAAA-TATCTTTAAAAA-ATTGTAGTGAGAGAGGATTAGCAGTAATCGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATAAAACAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTTTGTCGGAGACTCCTCATAAGGTGCTAGCCGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATAGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGTACTCCAGCAGATTATAACACTCGTCCACTTGATACAATTTACAGCAATTTCGTTGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTACGGGAAAACCATAGGTGCCTTTTTACCCGAAGACAGCCCACTGCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCGTGTGCAAAACAATTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTNAGATGGATTTCATTCCTGGCATCGATGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358106" ref_strand="+" ref_description="SGN-E358106 [cLHT-23-L5]">
      <seq>agagagagagatagagaacctgaaaaaagatatcttcaaaaaaattgtagtgagagaggatttgcagtaatcggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatctatgtgagaagcttctggcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacaccagcagattacaacactcgtccacttgatacaatttacagcaatttcattgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcatttctcaacttgtgaagtttatgggaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110083" stop="112549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110389" g_stop="110720" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="343" r_length="333" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="436" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112249" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="505" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E358106" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110389" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAAACTGAAAAAAG-TATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACC</genome_strand>
        <mrna_strand>ATAGAGAACCTGAAAAAAGATATCTTCAAAAAAATTGTAGTGAGAGAGGATTTGCAGTAATCGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATCTATGTGAGAAGCTTCTGGCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCAGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATTGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCATTTCTCAACTTGTGAAGTTTATGGGAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707986" ref_strand="+" ref_description="SGN-E707986 [FA34CB01]">
      <seq>gacattttgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccggcatttgatggtcctagtgaaggtgttcccagagtgttagcttgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110099" stop="114439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110392" g_stop="110720" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="422" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="530" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="645" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114139" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="774" r_length="129" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E707986" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110392" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCA-TTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTT</genome_strand>
        <mrna_strand>GACATTTTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTTGATGGTCCTAGTGAAGGTGTTCCCAGAGTGTTAGCTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366967" ref_strand="+" ref_description="SGN-E366967 [cLPT-6-I24]">
      <seq>agaaactgaaaaagtatcttcaaaaaaattgtagtgagagaggatttgcagtaatcggagatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttacccaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttatagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccggcattgatggtcctagtgaaagtgttccaagagtattagcttgctttagtaataaccttttaagacgtgagcctttgaaacttgtggatgggggagaatctcaaaggaccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110093" stop="114603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110393" g_stop="110538" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110539" i_stop="112213" i_length="1675">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112214" g_stop="112288" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="220" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="335" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114012" g_stop="114145" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="469" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="0.96"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114243" g_stop="114303" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="530" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E366967" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110393" e_stop="110538"/>
          <exon e_start="112214" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114145"/>
          <exon e_start="114243" e_stop="114303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCA</genome_strand>
        <mrna_strand>AGAAACTG-AAAAAGTATCTTCAAAAAAATTGTAGTGAGAGAGGATTTGCAGTAATCGGAGATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCCAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTATAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAAGTGTTCCAAGAGTATTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283492" ref_strand="+" ref_description="SGN-E283492 [cLER-12-A3]">
      <seq>gaaactgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataagtgcctttttaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110094" stop="112567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110394" g_stop="110720" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="420" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112267" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="507" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E283492" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110394" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCG</genome_strand>
        <mrna_strand>GAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAAGTGCCTTTTTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238525" ref_strand="+" ref_description="SGN-E238525 [cLED-17-G16]">
      <seq>aactgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110096" stop="114230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110396" g_stop="110720" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="418" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="526" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="641" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E238525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110396" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG</genome_strand>
        <mrna_strand>AACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237753" ref_strand="+" ref_description="SGN-E237753 [cLED-19-N2]">
      <seq>aactgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110096" stop="112333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110396" g_stop="110720" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112033" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="408" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E237753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110396" e_stop="110720"/>
          <exon e_start="111951" e_stop="112033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGC</genome_strand>
        <mrna_strand>AACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355768" ref_strand="+" ref_description="SGN-E355768 [cLHT-18-J19]">
      <seq>aaaagatatcttcaaaaaaattgtagtgagagaggatttgcagtaatcggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatctatgtgagaagcttctggcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacaccagcagattacaacactcgtgcacttgatacaatttacagcaatttcattgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcatttctcaacttgtgaagtttatgggaaaaccataggtgcctttttacccaaagacagcccactgcggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110103" stop="114162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110402" g_stop="110720" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="412" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="520" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113862" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="569" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E355768" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110402" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTG</genome_strand>
        <mrna_strand>AAAAGATATCTTCAAAAAAATTGTAGTGAGAGAGGATTTGCAGTAATCGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATCTATGTGAGAAGCTTCTGGCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCAGCAGATTACAACACTCGTGCACTTGATACAATTTACAGCAATTTCATTGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCATTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCCAAAGACAGCCCACTGCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731945" ref_strand="+" ref_description="SGN-E731945 [LA28CF01]">
      <seq>cttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccggcattgatggtcctagtgaaggtgttccaagagtgttagcttgcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110111" stop="114440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110411" g_stop="110720" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="403" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="511" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="626" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114140" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="755" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E731945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110411" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTA</genome_strand>
        <mrna_strand>CTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365314" ref_strand="+" ref_description="SGN-E365314 [cLPT-2-M10]">
      <seq>ttcaaaaaaattgtagtgagagaggatttgcagtaatcggagatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatctatgtgagaagcttctgtcggagacctcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacaccagcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccatangtgcctttttacccaaagacagcccactccggcaggatcctgcttattatgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110112" stop="114133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110412" g_stop="110720" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="403" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="511" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113833" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="531" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E365314" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110412" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGA-CTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCT</genome_strand>
        <mrna_strand>TTCAAAAAAATTGTAGTGAGAGAGGATTTGCAGTAATCGGAGATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATCTATGTGAGAAGCTTCTGTCGGAGACCTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCAGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATANGTGCCTTTTTACCCAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558727" ref_strand="+" ref_description="SGN-E558727 [18112]">
      <seq>aaaattgtagtgagagaggattagcagtaatcggaaatggcaggaagagtagatctggacggtaatcccataaaacagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttttgtcggagactcctcataaggtgctcgccgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcaatctgtactccagcagattataacactcgtccacttgatacaatttacagcaatttcattgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttacgggaaaaccataggtgcctttttacccaaagacagcccactgcggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcgtgtgcaaaacaattgattgagaggctggtctatgctgagggtgcggagaatggcttaagttcactattgtaaggccatttaactggattggtcctagatggatttcattcctggcatcgatggtcctatgaaggttgttccaagagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110118" stop="114426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110418" g_stop="110720" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="396" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="504" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="619" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114126" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="732" r_length="113" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E558727" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110418" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGG-TGTTCCAAGAGT</genome_strand>
        <mrna_strand>AAAATTGTAGTGAGAGAGGATTAGCAGTAATCGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATAAAACAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTTTGTCGGAGACTCCTCATAAGGTGCTCGCCGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCAATCTGTACTCCAGCAGATTATAACACTCGTCCACTTGATACAATTTACAGCAATTTCATTGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTACGGGAAAACCATAGGTGCCTTTTTACCCAAAGACAGCCCACTGCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCGTGTGCAAAACAATTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTA-AGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTA-GATGGATTTCATTCCTGGCATCGATGGTCCTA-TGAAGGTTGTTCCAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708725" ref_strand="+" ref_description="SGN-E708725 [FA36CD08]">
      <seq>caggtatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccggcattgatggtcctagtgaaggtgttccaagagtgttagcttgctttagtaataaccttttaagacgtgagcctttgaaacttgtggatgggggagaatctcaaaggaccttcatatatatcaaagatgctattgaagctgttcttctaatgatcgaaaatcctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110134" stop="114657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110431" g_stop="110720" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="382" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="490" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="605" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114145" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="739" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114243" g_stop="114344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="841" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="114428" g_stop="114439" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="853" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E708725" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110431" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114145"/>
          <exon e_start="114243" e_stop="114344"/>
          <exon e_start="114428" e_stop="114439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCGTGAGTTTTGACCTCCTTATCCCTTTATGTTTGTTTTCAGAAATGCATTAGGATCTATGTTGATTCAAGTAAATACAATGCAGGAAAATCCTGCC</genome_strand>
        <mrna_strand>CAG-GTATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC...................................................................................GAAAATCCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447461" ref_strand="+" ref_description="SGN-E447461 [cSTA-26-H17]">
      <seq>gagaatttgcagtaatcggaaatggcaggaagagtagatctggacggtaatcccataaaacagattacgatatgcatgattggtgccggtggattcattggctctcatttatgtgagaagcttttgtcggagactcctcataaggtgctcgccgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgactctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgtactccagcagattataacactcgtccacttgatacaatttacagcaatttcattgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110133" stop="112539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110433" g_stop="110720" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="381" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112239" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="440" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E447461" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110433" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTA</genome_strand>
        <mrna_strand>GAGAATTTGCAGTAATCGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATAAAACAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGCTCTCATTTATGTGAGAAGCTTTTGTCGGAGACTCCTCATAAGGTGCTCGCCGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGACTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGTACTCCAGCAGATTATAACACTCGTCCACTTGATACAATTTACAGCAATTTCATTGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731940" ref_strand="+" ref_description="SGN-E731940 [LA28CE08]">
      <seq>aggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagacctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccggcattgatggtcctagtgaaggtgttccaagagtgttagcttgctttagtaataaccttttaagacgtgagcctttgaaacttgtggatgggggagaatctcaaaggaccttcatatatatcaaagatgctattgaagctgttcttctaatgatcgaaaatcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110134" stop="114654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110434" g_stop="110720" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="380" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="488" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="603" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114145" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="737" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114243" g_stop="114344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="839" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="114428" g_stop="114438" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="840" r_stop="850" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E731940" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110434" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114145"/>
          <exon e_start="114243" e_stop="114344"/>
          <exon e_start="114428" e_stop="114438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCGTGAGTTTTGACCTCCTTATCCCTTTATGTTTGTTTTCAGAAATGCATTAGGATCTATGTTGATTCAAGTAAATACAATGCAGGAAAATCCTGC</genome_strand>
        <mrna_strand>AGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGACCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC...................................................................................GAAAATCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616875" ref_strand="+" ref_description="SGN-E616875 [90346]">
      <seq>cagtaatcggaaatggcaggaagagtagatctggacggtaatcccataaaacagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttttgtcggagactcctcataaggtgctcgccgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcaatctgtactccagcagattataacactcgtccacttgatacaatttacagcaatttcattgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttacgggaaaaccataggtgcctttttacccaaagacagcccactgcggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcgtgtgcaaaacaattgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttaactggattggtcctaggatggatttcattcctggcatcgatggtcctagtgaaggtgttccaagagtattagcttgctttagtaaataaccttttaagacgtgaacctttgaaacttgtggatgggggagaatcacaaaggacgttcatatacctcaaagatgctattgaagctgttcttctaatgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110142" stop="114645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110442" g_stop="110720" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="372" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="480" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="595" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114145" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="730" r_length="135" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="0.92"/>
            <acceptor a_prob="0.904" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114243" g_stop="114345" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="833" r_length="103" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E616875" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110442" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114145"/>
          <exon e_start="114243" e_stop="114345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGT-AATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCG</genome_strand>
        <mrna_strand>CAGTAATCGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATAAAACAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTTTGTCGGAGACTCCTCATAAGGTGCTCGCCGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCAATCTGTACTCCAGCAGATTATAACACTCGTCCACTTGATACAATTTACAGCAATTTCATTGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTACGGGAAAACCATAGGTGCCTTTTTACCCAAAGACAGCCCACTGCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCGTGTGCAAAACAATTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTCATTCCTGGCATCGATGGTCCTAGTGAAGGTGTTCCAAGAGTATTAGCTTGCTTTAGTAAAT.................................................................................................AACCTTTTAAGACGTGAACCTTTGAAACTTGTGGATGGGGGAGAATCACAAAGGACGTTCATATACCTCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558163" ref_strand="+" ref_description="SGN-E558163 [17459]">
      <seq>agtaatcggaaatggcaggaagagtagatctggacggtaatcccataaaacagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttttgtcggagactcctcataaggtgctcgccgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttggaaggtctcatcaaaatggcagatctgaccataaatcttgctgcaatctgtactccagcagattataacactcgtccacttgatacaatttacagcaatttcattgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttacgggaaaaccataggtgcctttttacccaaagacagnccactgcggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcgtgtgcaaaacaattgattgaggaggctggtctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110143" stop="114228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110443" g_stop="110720" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="372" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="480" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="596" r_length="116" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E558163" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110443" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTT-GAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGA-GAGGCTGGTCTATG</genome_strand>
        <mrna_strand>AGTAATCGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATAAAACAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTTTGTCGGAGACTCCTCATAAGGTGCTCGCCGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCAATCTGTACTCCAGCAGATTATAACACTCGTCCACTTGATACAATTTACAGCAATTTCATTGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTACGGGAAAACCATAGGTGCCTTTTTACCCAAAGACAGNCCACTGCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCGTGTGCAAAACAATTGATTGAGGAGGCTGGTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314635" ref_strand="+" ref_description="SGN-E314635 [cTOA-20-N11]">
      <seq>taattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttanagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccgcattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110145" stop="114401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110445" g_stop="110720" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="369" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="477" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="592" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114101" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="681" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E314635" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110445" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATG</genome_strand>
        <mrna_strand>TAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTANAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCC-GCATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329847" ref_strand="+" ref_description="SGN-E329847 [cTOD-3-N1]">
      <seq>ggaaatggcacgaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgctagctgtctatgtttacagtgataagattaagcatttgcttgaaccggcgacagttacttgggctgatcgaatgcaccctcatcgaatcaatattaagaatgatgctcgccttgaaggtctcatgaaaatggcatatctgaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110150" stop="111020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110450" g_stop="110720" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E329847" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110450" e_stop="110720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG</genome_strand>
        <mrna_strand>GGAAATGGCACGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTAGCTGTCTATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACAGTTACTTGGGCTGATCGAATGCACCCTCATCGAATCAATATTAAGAATGATGCTCGCCTTGAAGGTCTCATGAAAATGGCATATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301333" ref_strand="+" ref_description="SGN-E301333 [cLEW-24-O19]">
      <seq>tcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110267" stop="114177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110567" g_stop="110720" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="247" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="355" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113877" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="419" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E301333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110567" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGC</genome_strand>
        <mrna_strand>TCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231484" ref_strand="+" ref_description="SGN-E231484 [cLED-4-I20]">
      <seq>tcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctncccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110270" stop="114228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110570" g_stop="110720" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="244" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="352" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="467" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E231484" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110570" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG</genome_strand>
        <mrna_strand>TCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTNCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293001" ref_strand="+" ref_description="SGN-E293001 [cLET-12-F17]">
      <seq>gacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttanagttcactattgtaaggccatttaactggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110330" stop="114368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110630" g_stop="110720" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="184" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="292" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="407" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114068" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="464" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E293001" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110630" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTG</genome_strand>
        <mrna_strand>GACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTANAGTTCACTATTGTAAGGCCATTTAACTGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241946" ref_strand="+" ref_description="SGN-E241946 [cLED-27-A17]">
      <seq>tgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccggcattgatggtcctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110345" stop="114409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110645" g_stop="110720" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="169" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="277" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="392" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114109" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="490" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E241946" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110645" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGT</genome_strand>
        <mrna_strand>TGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239982" ref_strand="+" ref_description="SGN-E239982 [cLED-29-N9]">
      <seq>tgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110345" stop="112556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110645" g_stop="110720" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="169" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112256" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="245" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E239982" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110645" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTG</genome_strand>
        <mrna_strand>TGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209277" ref_strand="+" ref_description="SGN-E209277 [cLEC-53-O18]">
      <seq>gccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccggcattgatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110389" stop="114403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110689" g_stop="110720" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="125" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="233" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="348" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="440" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E209277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110689" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGT</genome_strand>
        <mrna_strand>GCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271540" ref_strand="+" ref_description="SGN-E271540 [cLEM-23-E24]">
      <seq>actcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccggcattgatggtcctagtgaaggtgttccaagagtgttagcttgctttagtaataaccttttaagacgtgagcctttgaaacttgtggatgggggagaatctcaaaggaccttcatatatatcaaagatgctattgaagctgttcttctaatgatcgaaaatcctgccagagccaatggccatatctttaatgttggtaaccctaacaatgaagttactgtcaggcagctggctgaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="111693" stop="114814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111993" g_stop="112043" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="159" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="274" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114012" g_stop="114145" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="408" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114243" g_stop="114344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="510" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114428" g_stop="114514" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="597" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E271540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111993" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114145"/>
          <exon e_start="114243" e_stop="114344"/>
          <exon e_start="114428" e_stop="114514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCGTGAGTTTTGACCTCCTTATCCCTTTATGTTTGTTTTCAGAAATGCATTAGGATCTATGTTGATTCAAGTAAATACAATGCAGGAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATG</genome_strand>
        <mrna_strand>ACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC...................................................................................GAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271721" ref_strand="+" ref_description="SGN-E271721 [cLEM-23-F24]">
      <seq>actcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttanagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccggcattgatggtcctagtgaaggtgttccaagagtgttagcttgctttagtaataaccttttaagacgtgagcctttgaaacttgtggatgggggagaatctcaaaggaccttcatatatatcaaagatgctattgaagctggtcttctaatgatcgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="111693" stop="114645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111993" g_stop="112043" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="159" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="274" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114012" g_stop="114145" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="408" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114243" g_stop="114344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="510" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114428" g_stop="114432" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="515" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E271721" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111993" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114145"/>
          <exon e_start="114243" e_stop="114344"/>
          <exon e_start="114428" e_stop="114432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCGTGAGTTTTGACCTCCTTATCCCTTTATGTTTGTTTTCAGAAATGCATTAGGATCTATGTTGATTCAAGTAAATACAATGCAGGAAAA</genome_strand>
        <mrna_strand>ACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTANAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGGTCTTCTAATGATC...................................................................................GAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699587" ref_strand="+" ref_description="SGN-E699587 [FA10CD10]">
      <seq>cacttcggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccggcattgatggtcctagtgaaggtgttccaagagtgttagcttgctttagtaataaccttttaagacgtgagcctttgaaacttgtggatgggggagaatctcaaaggaccttcatatatatcaaagatgctattgaagctgttcttctaatgatcgaaaatcctgccagagccaatggccatatctttaatgttggtaaccctaacaatgaagttactgtcaggcagctggctgaaatgatgactaaggtgtatgctaaggtgagtggagagtcttctattgaaacacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttccttatgggacttgctagaatccacactcacataccaacacaggacatacgctgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctgcttgttggcaggtctttcaatatcttgttacgaatctcctgagtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="113512" stop="115322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="126" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114012" g_stop="114145" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="260" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114243" g_stop="114344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="362" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114428" g_stop="114520" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="455" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114630" g_stop="114765" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="591" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114852" g_stop="115022" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="762" r_length="171" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E699587" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114145"/>
          <exon e_start="114243" e_stop="114344"/>
          <exon e_start="114428" e_stop="114520"/>
          <exon e_start="114630" e_stop="114765"/>
          <exon e_start="114852" e_stop="115022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCGTGAGTTTTGACCTCCTTATCCCTTTATGTTTGTTTTCAGAAATGCATTAGGATCTATGTTGATTCAAGTAAATACAATGCAGGAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAA</genome_strand>
        <mrna_strand>GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC...................................................................................GAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG.............................................................................................................GTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGAATCTCCTGAGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408456" ref_strand="+" ref_description="SGN-E408456 [PPI-11-K19]">
      <seq>tgcgtgtgcaaaacaattgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttaactggattggtcctaggatggatttcattcctggcatcgatggtcctagtgaaggtgttccaagagtattagcttgctttagtaataaccttttaagacgtgaacctttgaaacttgtggatgggggagaatcacaaaggacgttcatatacatcaaagatgctattgaagctgttcttctaatgatcgaaaatcctgccagagccaatggccatatctttaatgttggtaaccctaacaatgaagttactgtcaggcagctggctgaaatgatgactaaggtgtactcaaaggtgagtggagagtcttctattgaaacacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttccctatgggacttgctagaatccacactcacataccaacacaggacctatgccgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctgcttgttggcaggtctttcaatatcttgttacgattctccccgagtaaaatctacagtccatcactcatactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="113591" stop="115313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113891" g_stop="113928" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114012" g_stop="114145" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="172" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="0.96"/>
            <acceptor a_prob="0.904" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114243" g_stop="114344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="274" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83">
            <donor d_prob="0.966" d_score="0.96"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114428" g_stop="114520" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="367" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114630" g_stop="114765" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="503" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114852" g_stop="115049" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="698" r_length="195" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E408456" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113891" e_stop="113928"/>
          <exon e_start="114012" e_stop="114145"/>
          <exon e_start="114243" e_stop="114344"/>
          <exon e_start="114428" e_stop="114520"/>
          <exon e_start="114630" e_stop="114765"/>
          <exon e_start="114852" e_stop="115049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCGTGAGTTTTGACCTCCTTATCCCTTTATGTTTGTTTTCAGAAATGCATTAGGATCTATGTTGATTCAAGTAAATACAATGCAGGAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCT-CCTGAGTAAAAATCTACATAGTCCTTCACCTCATACAC</genome_strand>
        <mrna_strand>TGCGTGTGCAAAACAATTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTCATTCCTGGCATCGATGGTCCTAGTGAAGGTGTTCCAAGAGTATTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAACCTTTGAAACTTGTGGATGGGGGAGAATCACAAAGGACGTTCATATACATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC...................................................................................GAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG.............................................................................................................GTGTACTCAAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCCTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACCTATGCCGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCCCGAGT-AAAATCTAC--AGTCCATCA-CTCATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604027" ref_strand="+" ref_description="SGN-E604027 [67217]">
      <seq>atggcttagagttcactattgtaaggccatttaactggattggtccgtaggatggatttcattcctggcatcgatggatcctagtgaaggtgttccaagagtattagcttgctttaggtaataaccttttaagacgtgaacctttgaaacttgtggatgggggagaatcacaaaggacgttcatatacatcaaagatgccattgaggctgttcttctaatgatcgaaaatcctgccagagccaatggccatatctttaatgttggtaaccctaacaatgaagttactgtcaggcagctggctgaaatgatgactaaggtgtactcaaaggtgagtggagagtcttctattgaaatacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcaacttggttggaagccaaagacttccctatgggacttgctagaatccacactcacataccaacacaggacctacgccgaggctgtcaagcaggccatgtctaaaacaagcagcgaaatcgattgttcgctgcttgttggcaggtcttgcaatatcttgttacgattctcccgagtaaaatctacagtccatcactcatacacgtaatttacgtcccttctgtaatcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="113727" stop="115378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114027" g_stop="114145" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="0.90"/>
            <acceptor a_prob="0.904" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114243" g_stop="114344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="224" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83">
            <donor d_prob="0.966" d_score="0.92"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114428" g_stop="114520" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="317" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114630" g_stop="114765" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="453" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114852" g_stop="115078" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="677" r_length="224" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E604027" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114027" e_stop="114145"/>
          <exon e_start="114243" e_stop="114344"/>
          <exon e_start="114428" e_stop="114520"/>
          <exon e_start="114630" e_stop="114765"/>
          <exon e_start="114852" e_stop="115078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCC-TAGGATGGATTTTATTCCCGGCATTGATGG-TCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTA-GTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCGTGAGTTTTGACCTCCTTATCCCTTTATGTTTGTTTTCAGAAATGCATTAGGATCTATGTTGATTCAAGTAAATACAATGCAGGAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAA-CAGC-AAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATC</genome_strand>
        <mrna_strand>ATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCGTAGGATGGATTTCATTCCTGGCATCGATGGATCCTAGTGAAGGTGTTCCAAGAGTATTAGCTTGCTTTAGGTAAT.................................................................................................AACCTTTTAAGACGTGAACCTTTGAAACTTGTGGATGGGGGAGAATCACAAAGGACGTTCATATACATCAAAGATGCCATTGAGGCTGTTCTTCTAATGATC...................................................................................GAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG.............................................................................................................GTGTACTCAAAGGTGAGTGGAGAGTCTTCTATTGAAATACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAACTTG......................................................................................GTTGGAAGCCAAAGACTTCCCTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACCTACGCCGAGGCTGTCAAGCAGGCCATGTCTAAAACAAGCAGCGAAATCGATTGTTCGCTGCTTGTTGGCAGGTCTTGCAATATCTTGTTACGATTCTCCCGAGT-AAAATCTAC--AGTCCATCA-CTCATACACGTAA-TTTACGTCCCTTCTGTAATCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577760" ref_strand="-" ref_description="SGN-E577760 [LE15CG12]">
      <seq>ggtcctagcatggattttattcccggcattnatggtcctagtgaaggtgttccaagagtgttagcttgctttagtaataaccttttaagacgtgagcctttgtcccttgtggatgggtagaatctctaaggaccttcatatatatcaaagatgctattgtagctgttcttctaatgatcgagaatcctgccagagccaatggccatatctttaatgttggtaaccctaacaatgaagttactgtcaggcagctggctgaaatgatgactaaggtgtatgctaaggtgagtggagagtcttctattgaaacacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttccttatgggacttgctagaatccacactcacataccaacacaggacatacgctgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctgcttgttggcaggtctttcaatatcttgttacgattctcctgagtaaaaatctacatagtccttcacctcatacacgtaattttacgtcccttctgtaatgaatcatgtattctattttgtgacagcatatttattaagaaatttgaaaacctttttaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="113768" stop="115440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114068" g_stop="114145" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114243" g_stop="114344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="179" r_length="101" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114428" g_stop="114520" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="272" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114630" g_stop="114765" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="408" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114852" g_stop="115140" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="697" r_length="289" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E577760" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577760" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114068" e_stop="114145"/>
          <exon e_start="114243" e_stop="114344"/>
          <exon e_start="114428" e_stop="114520"/>
          <exon e_start="114630" e_stop="114765"/>
          <exon e_start="114852" e_stop="115140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCGTGAGTTTTGACCTCCTTATCCCTTTATGTTTGTTTTCAGAAATGCATTAGGATCTATGTTGATTCAAGTAAATACAATGCAGGAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAA</genome_strand>
        <mrna_strand>GGTCCTAGCATGGATTTTATTCCCGGCATTNATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAGCCTTTGTCCCTTGTGGAT-GGGTAGAATCTCTAAGGACCTTCATATATATCAAAGATGCTATTGTAGCTGTTCTTCTAATGATC...................................................................................GAGAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG.............................................................................................................GTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304347" ref_strand="+" ref_description="SGN-E304347 [cLEX-12-B6]">
      <seq>caagagtgttagcttgctttagtaataaccttttaagacgtgagcctttgaaacttgtggatgggggagaatctcaaaggaccttcatatatatcaaagatgctattgaagctgttcttctaatgatcgaaaatcctgccagagccaatggccatatctttaatgttggtaaccctaacaatgaagttactgtcaggcagctggctgaaatgatgactaaggtgtatgctaaggtgagtggagagtcttctattgaaacacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="113820" stop="115045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114120" g_stop="114145" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="0.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114243" g_stop="114344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="128" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114428" g_stop="114520" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="221" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114630" g_stop="114745" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="337" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E304347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114120" e_stop="114145"/>
          <exon e_start="114243" e_stop="114344"/>
          <exon e_start="114428" e_stop="114520"/>
          <exon e_start="114630" e_stop="114745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCGTGAGTTTTGACCTCCTTATCCCTTTATGTTTGTTTTCAGAAATGCATTAGGATCTATGTTGATTCAAGTAAATACAATGCAGGAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGAC</genome_strand>
        <mrna_strand>CAAGAGTGTTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC...................................................................................GAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG.............................................................................................................GTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465184" ref_strand="+" ref_description="SGN-E465184 [cPRO-20-G22]">
      <seq>agagtattagcttgctttagtaataaccttttaagacgtgaacctttgaaacttgtggatgggggagaatcacaaaggacgttcatatacatcaaagatgctattgaagctgttcttctaatgatcgaaaatcctgccagagccaatggccatatctttaatgttggtaaccctaacaatgaagttactgtcaggcagctggctgaaatgatgactaaggtgtactcaaaggtgagtggagagtcttctattgaaacacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttccctatgggacttgctagaatccacactcacataccaacacaggacctatgccgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctgcttgttggcaggtctttcaatatcttgttacgattctcccgagtaaaaatctacagtccatcactcatactcgtaattttacgtcccttctgtaatcaatcatgtattctattttgtgacagcatatttattaagaaatttgtgtcataggctgagtgtattatgtcactagagcttcaaatagttattggggtattagataaaggaaagctgtcctgttnctataaaattnngtgcttcatctattcattcctgtgtatggaaacatctgtatcattttgatcgacctattgatggagctataaatttcctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="113822" stop="115562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114122" g_stop="114145" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="0.00"/>
            <acceptor a_prob="0.904" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114243" g_stop="114344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="126" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83">
            <donor d_prob="0.966" d_score="0.96"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114428" g_stop="114520" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="219" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114630" g_stop="114765" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="355" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114852" g_stop="115118" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="619" r_length="264" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115119" i_stop="115171" i_length="53">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115172" g_stop="115354" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="796" r_length="177" r_score="0.847"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E465184" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114122" e_stop="114145"/>
          <exon e_start="114243" e_stop="114344"/>
          <exon e_start="114428" e_stop="114520"/>
          <exon e_start="114630" e_stop="114765"/>
          <exon e_start="114852" e_stop="115118"/>
          <exon e_start="115172" e_stop="115354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCGTGAGTTTTGACCTCCTTATCCCTTTATGTTTGTTTTCAGAAATGCATTAGGATCTATGTTGATTCAAGTAAATACAATGCAGGAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGGGCTATAAATTTTCCTATTTAT</genome_strand>
        <mrna_strand>AGAGTATTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAACCTTTGAAACTTGTGGATGGGGGAGAATCACAAAGGACGTTCATATACATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC...................................................................................GAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG.............................................................................................................GTGTACTCAAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCCTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACCTATGCCGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCCGAGTAAAAATCTAC--AGTCCATCA-CTCATACTCGTAATTTTACGTCCCTTCTGTAATCAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTT.....................................................GTGTCATAGGCTGAGTGTATTATGTCACTAGAGCTTC-AAATAGTTATTGGGGTATTAGAT-AAAGGAAAGCTGTCCTGTTNCTATAAAATTNNGTG-CTTC-ATCTATTCATTCCTGTGTATGGAAACATC-TGTATCATTTTGATCGACCTATTGATGGAGCTATAAA-TTTCCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463088" ref_strand="+" ref_description="SGN-E463088 [cPRO-13-H1]">
      <seq>agagtattagcttgctttagtaataaccttttaagacgtgaacctttgaaacttgtggatgggggagaatcacaaaggacgttcatatacatcaaagatgctattgaagctgttcttctaatgatcgaaaatcctgccagagccaatggccatatctttaatgttggtaaccctaacaatgaagttactgtcaggcagctggctgaaatgatgactaaggtgtactcaaaggtgagtggagagtcttctattgaaacacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttccctatgggacttgctagaatccacactcacataccaacacaggacctatgccgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctgcttgttggcaggtctttcaatatcttgttacgattctcccgagtaaaaatctacagtccatcactcatactcgtaattttacgtcccttctgtaatcaatcatgtattctattttgtgacagcatatttattaagaaatttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="113822" stop="115419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114122" g_stop="114145" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="0.00"/>
            <acceptor a_prob="0.904" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114243" g_stop="114344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="126" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83">
            <donor d_prob="0.966" d_score="0.96"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114428" g_stop="114520" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="219" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114630" g_stop="114765" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="355" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114852" g_stop="115122" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="623" r_length="268" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E463088" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114122" e_stop="114145"/>
          <exon e_start="114243" e_stop="114344"/>
          <exon e_start="114428" e_stop="114520"/>
          <exon e_start="114630" e_stop="114765"/>
          <exon e_start="114852" e_stop="115122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCGTGAGTTTTGACCTCCTTATCCCTTTATGTTTGTTTTCAGAAATGCATTAGGATCTATGTTGATTCAAGTAAATACAATGCAGGAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAA</genome_strand>
        <mrna_strand>AGAGTATTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAACCTTTGAAACTTGTGGATGGGGGAGAATCACAAAGGACGTTCATATACATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC...................................................................................GAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG.............................................................................................................GTGTACTCAAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCCTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACCTATGCCGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCCGAGTAAAAATCTAC--AGTCCATCA-CTCATACTCGTAATTTTACGTCCCTTCTGTAATCAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342619" ref_strand="+" ref_description="SGN-E342619 [cTOF-7-M16]">
      <seq>atatctttaatgttggtaaccctaacaatgaagttactgtcaggcagctggctgaaatgatgactaaggtgtatgctaaggtgagtggagagtcttctattgaaacacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttccttatgggacttgctagaatccacactcacataccaacacaggacatacgctgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctgcttgttggcaggtctttcaatatcttgttacgattctcctgagtaaaaatctacatagtccttcacctcatacacgtaattntacgtcccttctgtaatgaatcatgtattctattttgtgacagcatatttattaagaaatttgaaaacctttttaacaantacaatgctaggatactagatggacaggaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="114153" stop="115469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114453" g_stop="114520" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114630" g_stop="114765" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="204" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114852" g_stop="115169" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="522" r_length="318" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E342619" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114453" e_stop="114520"/>
          <exon e_start="114630" e_stop="114765"/>
          <exon e_start="114852" e_stop="115169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAA-TACAATGCTAAGGATACTAGATGGACAGGAATGC</genome_strand>
        <mrna_strand>ATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG.............................................................................................................GTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTNTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAANTACAATGCT-AGGATACTAGATGGACAGGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706594" ref_strand="+" ref_description="SGN-E706594 [FA30BF03]">
      <seq>ctttaatgttggtaaccctaacaatgaagttactgtcaggcagctggctgaaatgatgactaaggtgtatgctaaggtgagtggagagtcttctattgaaacacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttccttatgggacttgctagaatccacactcacataccaacacaggacatacgctgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctgcttgttggcaggtctttcaatatcttgttacgattctcctgagtaaaaatctacatagtccttcacctcatacacgtaattttacgtcccttctgtaatgaatcatgtattctattttgtgacagcatatttattaagaaatttgaaaacctttttaacaatacaatgctaaggatactagatggacaggaatgcaggtgtcataggctgggtgtattatgtcactagtgcttcaaaatagttatcggggtattagataaaagaaaagctgtcctgttcttataagatctgttgtcgtctatatatttattcctatgtatggaaacatcttgtatcattttcatcgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="114157" stop="115621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114457" g_stop="114520" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114630" g_stop="114765" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="200" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114852" g_stop="115305" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="654" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="687"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E706594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114457" e_stop="114520"/>
          <exon e_start="114630" e_stop="114765"/>
          <exon e_start="114852" e_stop="115305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTT</genome_strand>
        <mrna_strand>CTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG.............................................................................................................GTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351823" ref_strand="+" ref_description="SGN-E351823 [cTOS-8-M15]">
      <seq>tttaatgttggtaaccctaacaatgaagttactgtcaggcagctggctgaaatgatgactaaggtgtatgctaaggtgagtggagagtcttctattgaaacacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttccttatgggacttgctagaatccacactcacataccaacacaggacatacgctgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctgcttgttggcaggtctttcaatatcttgttacgattctcctgagtaaaaatctacatagtccttcacctcatacacgtaattttacgtcccttctgtaatgaatcatgtattctattttgtgacagcatatttattaagaaatttgaaaacctttttaacaatacaatgctaaggatactagatggacaggaatgcaggtgtcataggctgggtgtattatgtcactagtgcttcaaaatagttatcggggtattagataaaagaaaagctgtcctgttcttataagatctgttgtcgtctatatatttattcctatgtatggaaacatcttgtatcattttcatcgacctgttgatggggctataaattttcctatttattcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="114158" stop="115657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114458" g_stop="114520" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114630" g_stop="114765" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="199" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114852" g_stop="115356" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="704" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115357" i_stop="115645" i_length="289">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115646" g_stop="115653" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="712" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E351823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114458" e_stop="114520"/>
          <exon e_start="114630" e_stop="114765"/>
          <exon e_start="114852" e_stop="115356"/>
          <exon e_start="115646" e_stop="115653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGGGCTATAAATTTTCCTATTTATTCATTTATGTGATTGTTCATTCTTTACTTGTACTGATTTGTCATTTATGCTGGATTCCAAATTTTTATGACATGATTACTGCTCCAGAAGTCAACCTGATGCCCTGCACTATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTATAAAAAATAATTTAATCTGTAAAACTTACCAGAATGTTGAATACTCTTTTATTTCTCTTTTTAGGAAAAAAA</genome_strand>
        <mrna_strand>TTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG.............................................................................................................GTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGGGCTATAAATTTTCCTATTTATTC.................................................................................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539411" ref_strand="+" ref_description="SGN-E539411 [TUS-59-C14](-)">
      <seq>taacaatgaagttactgtcaggcagctggctgaaatgatgactaaggtgtatgctaaggtgagtggagagtcttctattgaaacacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttccttatgggacttgctagaatccacactcacataccaacacaggacatacgctgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctgcttgttggcaggtctttcaatatcttgttacgattctcctgagtaaaaatctacatagtccttcacctcatacacgtaattttacgtcccttctgtaatgaatcatgtattctattttgtgacagcatatttattaagaaatttgaaaacctttttaacaatacaatgctaaggatactagatggacaggaatgcaggtgtcataggctgggtgtattatgtcactagtgcttcaaaatagttatcggggtattagataaaagaaaagctgtcctgttcttataagatctgttgtcgtctatatatttattcctatgtatggaaacatcttgtatcattttcatcgacctgttgatggggctaaaaaaaaaaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="114175" stop="115641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114475" g_stop="114520" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114630" g_stop="114765" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="182" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114852" g_stop="115333" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="664" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="692"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E539411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114475" e_stop="114520"/>
          <exon e_start="114630" e_stop="114765"/>
          <exon e_start="114852" e_stop="115333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGG</genome_strand>
        <mrna_strand>TAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG.............................................................................................................GTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255492" ref_strand="+" ref_description="SGN-E255492 [cLEG-30-M16]">
      <seq>tgaaatgatgactaaggtgtatgctaaggtgagtggagagtcttcgattgaaacacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttccttatgggacttgctagaatccacactcacataccaacacaggacatacgctgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctgcttgttggcaggtctttcaatatcttgttacgattctcctgagtaaaaatctacatagtccttcacctcatacacgtaattttacgtcccttctgtaatgaatcatgtattctattttgtgacagcatatttattaagaaatttgaaaacctttttaacaatacaatgctaaggatactagatggacaggaatgcaggtgtcatangctgggtgtattatgtcactagtgcttcaaaatagttatcggggtattagataaaagaaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="114205" stop="115545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114505" g_stop="114520" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114630" g_stop="114765" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="152" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114852" g_stop="115245" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="546" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E255492" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114505" e_stop="114520"/>
          <exon e_start="114630" e_stop="114765"/>
          <exon e_start="114852" e_stop="115245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTG</genome_strand>
        <mrna_strand>TGAAATGATGACTAAG.............................................................................................................GTGTATGCTAAGGTGAGTGGAGAGTCTTCGATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATANGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416530" ref_strand="-" ref_description="SGN-E416530 [STM-23-M9]">
      <seq>cattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttcccctagggacttgcttgaatccacactcacataccaacacaggacctacgccgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctacttgttggcaggtctttcaatatcttgttacgattctcccgagtaaaaatctacagtccatcactcatacacgtaattttacgtcccttctgtaatcaatcatgtattctattttgtgacagcatatttattaagaaatttgtgtcataggctgggtgtattatgtcactagagcttcaaatagttattggggtattagataaaggaaaagctgtcctgatcttgtaagatttgttgtcaatcatctattcaatcctgtgtatggaaaccatcttggtatccattttgatcgacctattgatggagctataaattttcctatttattcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="114374" stop="115657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114674" g_stop="114765" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114852" g_stop="115118" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="356" r_length="264" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115119" i_stop="115171" i_length="53">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115172" g_stop="115356" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="543" r_length="187" r_score="0.870"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115357" i_stop="115645" i_length="289">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115646" g_stop="115657" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="555" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E416530" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416530" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114674" e_stop="114765"/>
          <exon e_start="114852" e_stop="115118"/>
          <exon e_start="115172" e_stop="115356"/>
          <exon e_start="115646" e_stop="115657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAA-CATCTT-GTAT-CATTTTCATCGACCTGTTGATGGGGCTATAAATTTTCCTATTTATTCATTTATGTGATTGTTCATTCTTTACTTGTACTGATTTGTCATTTATGCTGGATTCCAAATTTTTATGACATGATTACTGCTCCAGAAGTCAACCTGATGCCCTGCACTATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTATAAAAAATAATTTAATCTGTAAAACTTACCAGAATGTTGAATACTCTTTTATTTCTCTTTTTAGGAAAAAAATCAA</genome_strand>
        <mrna_strand>CATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCCCTAGGGACTTGCTTGAATCCACACTCACATACCAACACAGGACCTACGCCGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTACTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCCGAGTAAAAATCTAC--AGTCCATCA-CTCATACACGTAATTTTACGTCCCTTCTGTAATCAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTT.....................................................GTGTCATAGGCTGGGTGTATTATGTCACTAGAGCTTC-AAATAGTTATTGGGGTATTAGATAAAGGAAAAGCTGTCCTGATCTTGTAAGATTTGTTGTCAATCATCTATTCAATCCTGTGTATGGAAACCATCTTGGTATCCATTTTGATCGACCTATTGATGGAGCTATAAATTTTCCTATTTATTC.................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416529" ref_strand="-" ref_description="SGN-E416529 [STM-23-M9]">
      <seq>gaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttcccttagggacttgcttgaatccacactcacataccaacacaggacctacgccgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctacttgttggcaggtctttcaatatcttgttacgattctcccgagtaaaaatctacagtccatcactcatacacgtaattttacgtcccttctgtaatcaatcatgtattctattttgtgacagcatatttattaagaaatttgtgtcataggctgggtgtattatgtcactagagcttcaaatagttattggggtattagataaaggaaaagctgtcctgttcttgtaagatttgttgtcattcatctattcattcctgtgtatggaaacatcttgtatcattttgatcgacctattgatggagctataaatttttcctatttatttcaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="114405" stop="115657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114705" g_stop="114765" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114852" g_stop="115118" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="325" r_length="264" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115119" i_stop="115171" i_length="53">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115172" g_stop="115356" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="510" r_length="185" r_score="0.903"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115357" i_stop="115645" i_length="289">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115646" g_stop="115657" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="522" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E416529" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416529" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114705" e_stop="114765"/>
          <exon e_start="114852" e_stop="115118"/>
          <exon e_start="115172" e_stop="115356"/>
          <exon e_start="115646" e_stop="115657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGGGCTATAAA-TTTTCCTATTTATTCATTTATGTGATTGTTCATTCTTTACTTGTACTGATTTGTCATTTATGCTGGATTCCAAATTTTTATGACATGATTACTGCTCCAGAAGTCAACCTGATGCCCTGCACTATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTATAAAAAATAATTTAATCTGTAAAACTTACCAGAATGTTGAATACTCTTTTATTTCTCTTTTTAGGAAAAAAATCAA</genome_strand>
        <mrna_strand>GAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCCTTAGGGACTTGCTTGAATCCACACTCACATACCAACACAGGACCTACGCCGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTACTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCCGAGTAAAAATCTAC--AGTCCATCA-CTCATACACGTAATTTTACGTCCCTTCTGTAATCAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTT.....................................................GTGTCATAGGCTGGGTGTATTATGTCACTAGAGCTTC-AAATAGTTATTGGGGTATTAGATAAAGGAAAAGCTGTCCTGTTCTTGTAAGATTTGTTGTCATTCATCTATTCATTCCTGTGTATGGAAACATCTTGTATCATTTTGATCGACCTATTGATGGAGCTATAAATTTTTCCTATTTATTT.................................................................................................................................................................................................................................................................................................CAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438897" ref_strand="-" ref_description="SGN-E438897 [cSTA-10-K7]">
      <seq>caaattgattgttcgccacttgttggcaggtcattcaatatcttgatacgattctcccgagtaaaaatctacagtccatcactcatacacgtaattttacgtcccttctgtaatcaatcatgtattctattttgtgacagcatatttattaagaaatttgtgtcataggctgggtgtattatgtcactagagcttcaaatagttattggggtattagataaaggaaaagctgtcctgttcttgtaagatttgttgtcattcatctattcattcctgtgtatggaaacatcttgtatcattttgatcgacctattgatggagctataaattttcctatttattcaaaaaaaaaaaaaaaaaactgaactagtctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="114657" stop="115657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114957" g_stop="115118" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115119" i_stop="115171" i_length="53">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115172" g_stop="115356" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="343" r_length="184" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115357" i_stop="115645" i_length="289">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115646" g_stop="115657" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="355" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E438897" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438897" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="114957" e_stop="115118"/>
          <exon e_start="115172" e_stop="115356"/>
          <exon e_start="115646" e_stop="115657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGGGCTATAAATTTTCCTATTTATTCATTTATGTGATTGTTCATTCTTTACTTGTACTGATTTGTCATTTATGCTGGATTCCAAATTTTTATGACATGATTACTGCTCCAGAAGTCAACCTGATGCCCTGCACTATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTATAAAAAATAATTTAATCTGTAAAACTTACCAGAATGTTGAATACTCTTTTATTTCTCTTTTTAGGAAAAAAATCAA</genome_strand>
        <mrna_strand>CAAATTGATTGTTCGCCACTTGTTGGCAGGTCATTCAATATCTTGATACGATTCTCCCGAGTAAAAATCTAC--AGTCCATCA-CTCATACACGTAATTTTACGTCCCTTCTGTAATCAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTT.....................................................GTGTCATAGGCTGGGTGTATTATGTCACTAGAGCTTC-AAATAGTTATTGGGGTATTAGATAAAGGAAAAGCTGTCCTGTTCTTGTAAGATTTGTTGTCATTCATCTATTCATTCCTGTGTATGGAAACATCTTGTATCATTTTGATCGACCTATTGATGGAGCTATAAATTTTCCTATTTATTC.................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609299" ref_strand="-" ref_description="SGN-E609299 [25304]">
      <seq>tgtaatcaatcatgtattctattttgtgacagcatatttattaagaaatttgtgtcataggctgggtgtattatgtcactagagcttcaaatagttattggggtattagataaaggaaaagctgtcctgttcttataagatttgttgtcattcatctattcattcctgtgtatggaaacatcttgtatcattaagatcgacctattgatggagctataaattttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="114768" stop="115613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115068" g_stop="115118" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115119" i_stop="115171" i_length="53">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115172" g_stop="115347" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="226" r_length="175" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E609299" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609299" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="115068" e_stop="115118"/>
          <exon e_start="115172" e_stop="115347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGGGCTATAAATTTTCC</genome_strand>
        <mrna_strand>TGTAATCAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTT.....................................................GTGTCATAGGCTGGGTGTATTATGTCACTAGAGCTTCAA-ATAGTTATTGGGGTATTAGATAAAGGAAAAGCTGTCCTGTTCTTATAAGATTTGTTGTCATTCATCTATTCATTCCTGTGTATGGAAACATCTTGTATCATTAAGATCGACCTATTGATGGAGCTATAAATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="120742" stop="119748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120442" g_stop="120048" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120442" e_stop="120048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAATAGAAATGCCGAAAAGAAGTCGCATAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAAAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="120738" stop="119776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120438" g_stop="120076" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120438" e_stop="120076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAATAGAAATGCCGAAAAGAAGTCGCATAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAAAAATTCAAAGGCAACTGTTATAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538064" ref_strand="+" ref_description="SGN-E538064 [TUS-56-P20]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaatataacggaatttaaaacgggtcacgcgcgcggatccgagtcgggtcgggttaactaaaaagttgaaaacaattcggttaatttctgttatcaactgattaattgaaaataatttttggccatttaannttattaataaataattaaaataatttgtccaaaaaatatctctcgatcatttgccaagtcgaagccgagcgagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="120587" stop="122028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120887" g_stop="121759" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="857" r_length="857" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E538064" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120887" e_stop="121759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGAATTATATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTATAAAAAATAATTTAATCTGTAAAACTTACCAGAATGTTGAATACTCTTTTATTTCTCTTTTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAATATATG-TTTTTAAGAAGAAGGAAGCTCAGAAAATTCGTTCGTAAATATTTTGAATACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCTACCCTTTCAGAATTGACACGGCCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAATCATGGCGGGAAATTTTGAATATAACGGAATTTAAAACGGGTCACTCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTAAAAATATTTCGGTTAAATTCTGTTATCAACTAATTTATTGAAAAATAATTTTTGGCCATTTAAATTAATTAATAAATAATTAAAATAAATTTTGTCCAAAAAATTATCTCTCGATCGATCAAAAGCCAAAGCCAAAGCCGACGCGAGCGA</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTC-TTT-TTGAT-AATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAAC-A--GTGGCGGGAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACAATTCGGTTAATTTCTGTTATCAACTGATTAATTG-AAAATAATTTTTGGCCATTTAANNTTATTAATAAATAATTAAAAT-AA-TTTGTCCAAAAAA-TATCTCTCGATC-AT---TTGCC-AAGTCGAAGCCGA-GCGAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538071" ref_strand="+" ref_description="SGN-E538071 [TUS-56-P24]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgagggttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgagacaaccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="120587" stop="121761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120887" g_stop="121461" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E538071" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120887" e_stop="121461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGAATTATATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTATAAAAAATAATTTAATCTGTAAAACTTACCAGAATGTTGAATACTCTTTTATTTCTCTTTTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAATATATG-TTTTTAAGAAGAAGGAAGCTCAGAAAATTCGTTCGTAAATATTTTGAATACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCTACCCTTTCAGAATTGACACGGCCATTAA</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTC-TTT-TTGAT-AATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGGTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGAGACAACCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268499" ref_strand="+" ref_description="SGN-E268499 [cLEI-13-K15]">
      <seq>ttataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="120588" stop="121598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120888" g_stop="121298" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-E268499" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120888" e_stop="121298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGAATTATATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTATAAAAAATAATTTAATCTGTAAAACTTACCAGAATGTTGAATACTCTTTTATTTCTCTTTTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</genome_strand>
        <mrna_strand>TTATAATTGCAGACTTAAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTC-TTT-TTGAT-AATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347153" ref_strand="+" ref_description="SGN-E347153 [cTOF-25-O15]">
      <seq>aacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="124320" stop="123370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124020" g_stop="123669" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-E347153" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124020" e_stop="123669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATGATCTTGCAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCAAGGGGGATGGGATTGAAGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTCCCCTCCCTATGATGTGAGTGCATTATTTTCTGTAGTTTGTGAAGGTTGAGTTGATAAAAC</genome_strand>
        <mrna_strand>AACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTATTTTTT-CCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>162</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="205" PGL_stop="1456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="212" e_stop="271"/>
            <exon e_start="690" e_stop="761"/>
            <exon e_start="894" e_stop="1330"/>
            <exon e_start="1443" e_stop="1456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.747" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.781" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="212" e_stop="271" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.747" acc_prob="0.997">
            <gDNA_intron_boundary i_start="272" i_stop="689" i_length="418"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="690" e_stop="761" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.904">
            <gDNA_intron_boundary i_start="762" i_stop="893" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="894" e_stop="1330" e_length="437"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.781">
            <gDNA_intron_boundary i_start="1331" i_stop="1442" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="0.643">
            <gDNA_exon_boundary e_start="1443" e_stop="1456" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="212" stop="271"/>
              <exon start="690" stop="761"/>
              <exon start="894" stop="1330"/>
              <exon start="1443" stop="1456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="212" stop="271"/>
              <exon start="690" stop="761"/>
              <exon start="894" stop="1330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCTGTCTGGTGCATGGGCTTTCAGAAAATTCCGGGTCAAGGATTGACAATTTTAGGAG : ACCTTGTTCTAAAAGACAAGATTATAGTTTACGATCTGGCTGGACAACGGATTGGATGGGCCAACTACGATT : GTTCGCAAGCTGTTAATGTTTCTGCTACCACGAGCAGAGGGAAAACTGAGTATGTCAATGCAGGACAGATTGGTAACAGTTCACCACGTAACGACCCTTACACGCTGCTATTAAGCGTCATTCTAACTTTCGTGTTGCAAGCATTAGCCTTCGGCACTTACTCATTCTTGTAACAGTTTGGTATTGTGGAAGTCAACTGTTAAATTCTTTCTCATTTTTGTATAGCCCGCTGTCCTACTATAGTTATTTATTTTACCGCGGTCGATAAAGATTTAGATTTCTTTTATAGTAGTAGCCCTAGTTCTGTTGTTTGTTCAGACAGTGTCCTAGTTCCACAAATAGTATACTCATGTAGTGGTTAAATTTCTTGTAAAGTAGATTTCAACACATGTATTACAATACCATTTGATTTTGAATGAAAATTTTGTTAAATATTT : AAGAAAATAAACGC</gDNA_template>
            <first_frame> L  L  S  G  A  W  A  F  R  K  F  R  V  K  D  *  Q  F  *  E  :  T  L  F  *  K  T  R  L  *  F  T  I  W  L  D  N  G  L  D  G  P  T  T  I  :  V  R  K  L  L  M  F  L  L  P  R  A  E  G  K  L  S  M  S  M  Q  D  R  L  V  T  V  H  H  V  T  T  L  T  R  C  Y  *  A  S  F  *  L  S  C  C  K  H  *  P  S  A  L  T  H  S  C  N  S  L  V  L  W  K  S  T  V  K  F  F  L  I  F  V  *  P  A  V  L  L  *  L  F  I  L  P  R  S  I  K  I  *  I  S  F  I  V  V  A  L  V  L  L  F  V  Q  T  V  S  *  F  H  K  *  Y  T  H  V  V  V  K  F  L  V  K  *  I  S  T  H  V  L  Q  Y  H  L  I  L  N  E  N  F  V  K  Y  L :   R  K  *  T  </first_frame>
            <second_frame>  C  C  L  V  H  G  L  S  E  N  S  G  S  R  I  D  N  F  R  R :   P  C  S  K  R  Q  D  Y  S  L  R  S  G  W  T  T  D  W  M  G  Q  L  R  L :   F  A  S  C  *  C  F  C  Y  H  E  Q  R  E  N  *  V  C  Q  C  R  T  D  W  *  Q  F  T  T  *  R  P  L  H  A  A  I  K  R  H  S  N  F  R  V  A  S  I  S  L  R  H  L  L  I  L  V  T  V  W  Y  C  G  S  Q  L  L  N  S  F  S  F  L  Y  S  P  L  S  Y  Y  S  Y  L  F  Y  R  G  R  *  R  F  R  F  L  L  *  *  *  P  *  F  C  C  L  F  R  Q  C  P  S  S  T  N  S  I  L  M  *  W  L  N  F  L  *  S  R  F  Q  H  M  Y  Y  N  T  I  *  F  *  M  K  I  L  L  N  I   : *  E  N  K  R </second_frame>
            <third_frame>   A  V  W  C  M  G  F  Q  K  I  P  G  Q  G  L  T  I  L  G   : D  L  V  L  K  D  K  I  I  V  Y  D  L  A  G  Q  R  I  G  W  A  N  Y  D   : C  S  Q  A  V  N  V  S  A  T  T  S  R  G  K  T  E  Y  V  N  A  G  Q  I  G  N  S  S  P  R  N  D  P  Y  T  L  L  L  S  V  I  L  T  F  V  L  Q  A  L  A  F  G  T  Y  S  F  L  *  Q  F  G  I  V  E  V  N  C  *  I  L  S  H  F  C  I  A  R  C  P  T  I  V  I  Y  F  T  A  V  D  K  D  L  D  F  F  Y  S  S  S  P  S  S  V  V  C  S  D  S  V  L  V  P  Q  I  V  Y  S  C  S  G  *  I  S  C  K  V  D  F  N  T  C  I  T  I  P  F  D  F  E  *  K  F  C  *  I  F  :  K  K  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="214" stop="271"/>
                    <exon start="690" stop="761"/>
                    <exon start="894" stop="1066"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVWCMGFQKIPGQGLTILGDLVLKDKIIVYDLAGQRIGWANYDCSQAVNVSATTSRGKTEYVNAGQIGNSSPRNDPYTLLLSVILTFVLQALAFGTYSFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="205" e_stop="271"/>
            <exon e_start="690" e_stop="761"/>
            <exon e_start="894" e_stop="1327"/>
            <exon e_start="1443" e_stop="1455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.747" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.781" e_score="1.000"/>
          <exon-only e_score="0.692"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="205" e_stop="271" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.747" acc_prob="0.997">
            <gDNA_intron_boundary i_start="272" i_stop="689" i_length="418"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="690" e_stop="761" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.904">
            <gDNA_intron_boundary i_start="762" i_stop="893" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="894" e_stop="1327" e_length="434"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.781">
            <gDNA_intron_boundary i_start="1328" i_stop="1442" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="0.692">
            <gDNA_exon_boundary e_start="1443" e_stop="1455" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="205" stop="271"/>
              <exon start="690" stop="761"/>
              <exon start="894" stop="1327"/>
              <exon start="1443" stop="1455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274686" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGGTGCTGCTGTCTGGTGCATGGGCTTTCAGAAAATTCCGGGTCAAGGATTGACAATTTTAGGAG : ACCTTGTTCTAAAAGACAAGATTATAGTTTACGATCTGGCTGGACAACGGATTGGATGGGCCAACTACGATT : GTTCGCAAGCTGTTAATGTTTCTGCTACCACGAGCAGAGGGAAAACTGAGTATGTCAATGCAGGACAGATTGGTAACAGTTCACCACGTAACGACCCTTACACGCTGCTATTAAGCGTCATTCTAACTTTCGTGTTGCAAGCATTAGCCTTCGGCACTTACTCATTCTTGTAACAGTTTGGTATTGTGGAAGTCAACTGTTAAATTCTTTCTCATTTTTGTATAGCCCGCTGTCCTACTATAGTTATTTATTTTACCGCGGTCGATAAAGATTTAGATTTCTTTTATAGTAGTAGCCCTAGTTCTGTTGTTTGTTCAGACAGTGTCCTAGTTCCACAAATAGTATACTCATGTAGTGGTTAAATTTCTTGTAAAGTAGATTTCAACACATGTATTACAATACCATTTGATTTTGAATGAAAATTTTGTTAAATA : AAGAAAATAAACG</gDNA_template>
            <first_frame> G  G  A  A  V  W  C  M  G  F  Q  K  I  P  G  Q  G  L  T  I  L  G   : D  L  V  L  K  D  K  I  I  V  Y  D  L  A  G  Q  R  I  G  W  A  N  Y  D   : C  S  Q  A  V  N  V  S  A  T  T  S  R  G  K  T  E  Y  V  N  A  G  Q  I  G  N  S  S  P  R  N  D  P  Y  T  L  L  L  S  V  I  L  T  F  V  L  Q  A  L  A  F  G  T  Y  S  F  L  *  Q  F  G  I  V  E  V  N  C  *  I  L  S  H  F  C  I  A  R  C  P  T  I  V  I  Y  F  T  A  V  D  K  D  L  D  F  F  Y  S  S  S  P  S  S  V  V  C  S  D  S  V  L  V  P  Q  I  V  Y  S  C  S  G  *  I  S  C  K  V  D  F  N  T  C  I  T  I  P  F  D  F  E  *  K  F  C  *  I  :  K  K  I  N  </first_frame>
            <second_frame>  V  V  L  L  S  G  A  W  A  F  R  K  F  R  V  K  D  *  Q  F  *  E  :  T  L  F  *  K  T  R  L  *  F  T  I  W  L  D  N  G  L  D  G  P  T  T  I  :  V  R  K  L  L  M  F  L  L  P  R  A  E  G  K  L  S  M  S  M  Q  D  R  L  V  T  V  H  H  V  T  T  L  T  R  C  Y  *  A  S  F  *  L  S  C  C  K  H  *  P  S  A  L  T  H  S  C  N  S  L  V  L  W  K  S  T  V  K  F  F  L  I  F  V  *  P  A  V  L  L  *  L  F  I  L  P  R  S  I  K  I  *  I  S  F  I  V  V  A  L  V  L  L  F  V  Q  T  V  S  *  F  H  K  *  Y  T  H  V  V  V  K  F  L  V  K  *  I  S  T  H  V  L  Q  Y  H  L  I  L  N  E  N  F  V  K  * :   R  K  *  T </second_frame>
            <third_frame>   W  C  C  C  L  V  H  G  L  S  E  N  S  G  S  R  I  D  N  F  R  R :   P  C  S  K  R  Q  D  Y  S  L  R  S  G  W  T  T  D  W  M  G  Q  L  R  L :   F  A  S  C  *  C  F  C  Y  H  E  Q  R  E  N  *  V  C  Q  C  R  T  D  W  *  Q  F  T  T  *  R  P  L  H  A  A  I  K  R  H  S  N  F  R  V  A  S  I  S  L  R  H  L  L  I  L  V  T  V  W  Y  C  G  S  Q  L  L  N  S  F  S  F  L  Y  S  P  L  S  Y  Y  S  Y  L  F  Y  R  G  R  *  R  F  R  F  L  L  *  *  *  P  *  F  C  C  L  F  R  Q  C  P  S  S  T  N  S  I  L  M  *  W  L  N  F  L  *  S  R  F  Q  H  M  Y  Y  N  T  I  *  F  *  M  K  I  L  L  N   : K  E  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="205" stop="271"/>
                    <exon start="690" stop="761"/>
                    <exon start="894" stop="1066"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGAAVWCMGFQKIPGQGLTILGDLVLKDKIIVYDLAGQRIGWANYDCSQAVNVSATTSRGKTEYVNAGQIGNSSPRNDPYTLLLSVILTFVLQALAFGTYSFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7917" PGL_stop="1524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7917" e_stop="7825"/>
            <exon e_start="6840" e_stop="6721"/>
            <exon e_start="5171" e_stop="5057"/>
            <exon e_start="4931" e_stop="4876"/>
            <exon e_start="4014" e_stop="3967"/>
            <exon e_start="3860" e_stop="3763"/>
            <exon e_start="2993" e_stop="2924"/>
            <exon e_start="2741" e_stop="2631"/>
            <exon e_start="1886" e_stop="1524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.852" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.390" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7917" e_stop="7825" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.899">
            <gDNA_intron_boundary i_start="7824" i_stop="6841" i_length="984"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6840" e_stop="6721" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5171" e_stop="5057" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.898" acc_prob="0.852">
            <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4931" e_stop="4876" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4014" e_stop="3967" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.390" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3860" e_stop="3763" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2993" e_stop="2924" e_length="70"/>
          </exon>
          <intron i_serial="7" don_prob="0.881" acc_prob="0.992">
            <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2741" e_stop="2631" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2630" i_stop="1887" i_length="744"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="1886" e_stop="1524" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7917" stop="7825"/>
              <exon start="6840" stop="6721"/>
              <exon start="5171" stop="5057"/>
              <exon start="4931" stop="4876"/>
              <exon start="4014" stop="3967"/>
              <exon start="3860" stop="3763"/>
              <exon start="2993" stop="2924"/>
              <exon start="2741" stop="2631"/>
              <exon start="1886" stop="1773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7900" stop="7825"/>
              <exon start="6840" stop="6721"/>
              <exon start="5171" stop="5057"/>
              <exon start="4931" stop="4876"/>
              <exon start="4014" stop="3967"/>
              <exon start="3860" stop="3763"/>
              <exon start="2993" stop="2924"/>
              <exon start="2741" stop="2631"/>
              <exon start="1886" stop="1796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7899" stop="7825"/>
              <exon start="6840" stop="6721"/>
              <exon start="5171" stop="5057"/>
              <exon start="4931" stop="4876"/>
              <exon start="4014" stop="3967"/>
              <exon start="3860" stop="3768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7899" stop="7825"/>
              <exon start="6840" stop="6721"/>
              <exon start="5171" stop="5057"/>
              <exon start="4931" stop="4876"/>
              <exon start="4014" stop="3967"/>
              <exon start="3860" stop="3788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7858" stop="7825"/>
              <exon start="6840" stop="6721"/>
              <exon start="5171" stop="5057"/>
              <exon start="4931" stop="4876"/>
              <exon start="4014" stop="3967"/>
              <exon start="3860" stop="3763"/>
              <exon start="2993" stop="2924"/>
              <exon start="2741" stop="2737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6840" stop="6721"/>
              <exon start="5171" stop="5057"/>
              <exon start="4931" stop="4876"/>
              <exon start="4014" stop="3967"/>
              <exon start="3860" stop="3763"/>
              <exon start="2993" stop="2924"/>
              <exon start="2741" stop="2631"/>
              <exon start="1886" stop="1643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6840" stop="6721"/>
              <exon start="5171" stop="5057"/>
              <exon start="4931" stop="4876"/>
              <exon start="4014" stop="3967"/>
              <exon start="3860" stop="3763"/>
              <exon start="2993" stop="2924"/>
              <exon start="2741" stop="2631"/>
              <exon start="1886" stop="1643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6840" stop="6721"/>
              <exon start="5171" stop="5057"/>
              <exon start="4931" stop="4876"/>
              <exon start="4014" stop="3967"/>
              <exon start="3860" stop="3763"/>
              <exon start="2993" stop="2924"/>
              <exon start="2741" stop="2636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6840" stop="6721"/>
              <exon start="5171" stop="5057"/>
              <exon start="4931" stop="4876"/>
              <exon start="4014" stop="3967"/>
              <exon start="3860" stop="3763"/>
              <exon start="2993" stop="2924"/>
              <exon start="2741" stop="2636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6840" stop="6721"/>
              <exon start="5171" stop="5057"/>
              <exon start="4931" stop="4876"/>
              <exon start="4014" stop="3967"/>
              <exon start="3860" stop="3763"/>
              <exon start="2993" stop="2924"/>
              <exon start="2741" stop="2688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3789" stop="3763"/>
              <exon start="2993" stop="2924"/>
              <exon start="2741" stop="2631"/>
              <exon start="1886" stop="1524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322108" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3780" stop="3763"/>
              <exon start="2993" stop="2924"/>
              <exon start="2741" stop="2631"/>
              <exon start="1886" stop="1524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322229" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTATATTCCTGTGACCGCCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTG : ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTG : CCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG : GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG : ACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG : GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATT : GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG : GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATG : GTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATGCACGGTGTAACTGAAGATCAGCTGAACTGACAGATGAACGGCCACATTATTTTGCTGCAGAGTAAACTAATGATATTGTCAAAGGCTCGTTTAGCTATCGATAACTATGGATTTCTTTTATTTTGAAAATTAGAAGAGAAAAAAGTGGTTGTATAACTTAGAAAAGACAAAGGAAGACCTTGACAATTTAATCTATTGATTGTATACCGTGAATCCATCTATCATCTATTTATTGTAAAGCATTTTGTC</gDNA_template>
            <first_frame> P  I  F  L  *  P  P  L  S  A  L  L  L  L  Y  I  F  F  R  R  P  A  A  P  S  S  A  S  *  I  L  :  I  V  L  T  E  M  G  A  K  G  R  K  K  S  I  T  K  K  L  K  K  G  A  N  E  F  S  A  S  S  V  S  K  D  K  A  A  D  F  L  :  P  L  E  G  G  P  A  R  K  L  P  D  T  E  V  R  E  S  K  A  T  I  L  Y  I  G  R  I  P  H  G  F  Y  E  N  E  M  E   : G  F  F  K  Q  F  G  T  I  K  R  L  R  L  A  R  N  K  K  :  T  G  K  S  K  H  F  G  F  I  E  F  E  S  P  E  :  V  A  K  V  V  A  D  T  M  H  N  Y  L  L  F  E  H  L  L  Q  V  R  L  I  P  P  E  H  V  H  P  R  L :   W  K  G  V  N  R  W  Y  K  P  L  D  W  V  K  I  E  R  K  R  Q  D  K  :  E  R  T  L  E  E  H  N  K  L  V  G  E  I  L  K  R  D  K  K  R  R  K  R  I  E  A  A  G  I  D  Y  E  C  P  E  M  :  V  G  A  I  Q  A  A  P  K  K  I  R  F  T  D  *  I  F  I  S  I  A  R  E  R  N  S  I  Y  G  D  K  *  I  T  M  C  M  H  G  V  T  E  D  Q  L  N  *  Q  M  N  G  H  I  I  L  L  Q  S  K  L  M  I  L  S  K  A  R  L  A  I  D  N  Y  G  F  L  L  F  *  K  L  E  E  K  K  V  V  V  *  L  R  K  D  K  G  R  P  *  Q  F  N  L  L  I  V  Y  R  E  S  I  Y  H  L  F  I  V  K  H  F  V </first_frame>
            <second_frame>  L  Y  S  C  D  R  H  S  P  L  Y  S  S  S  I  S  F  S  G  G  R  Q  L  L  L  Q  L  R  E  F  * :   L  F  *  Q  R  W  V  P  K  G  G  R  K  A  *  L  R  S  *  R  R  V  L  T  N  S  Q  L  L  R  F  L  K  I  K  L  L  T  F  C :   H  W  K  V  G  R  Q  E  N  S  R  I  L  K  Y  G  K  V  K  R  Q  Y  C  I  L  E  G  F  H  M  D  F  M  R  M  K  W  K  :  V  S  L  S  N  L  V  Q  L  R  G  L  D  L  Q  G  I  K  R :   R  E  N  Q  S  I  L  A  S  *  N  L  S  P  L  R :   L  L  K  W  L  R  I  P  C  I  T  I  Y  Y  L  S  T  C  C  K  F  V  L  F  L  L  S  M  F  I  P  D   : C  G  K  V  *  T  A  G  T  N  R  W  T  G  L  K  L  K  G  S  V  R  T  R :   K  E  H  W  K  S  I  I  S  W  L  E  K  F  *  N  V  T  K  R  G  E  R  G  S  R  Q  L  G  L  I  T  S  A  Q  K  W :   W  V  Q  F  R  L  H  Q  R  R  S  G  S  L  I  R  S  L  *  V  *  L  V  N  E  I  V  S  M  A  T  S  R  L  L  C  V  C  T  V  *  L  K  I  S  *  T  D  R  *  T  A  T  L  F  C  C  R  V  N  *  *  Y  C  Q  R  L  V  *  L  S  I  T  M  D  F  F  Y  F  E  N  *  K  R  K  K  W  L  Y  N  L  E  K  T  K  E  D  L  D  N  L  I  Y  *  L  Y  T  V  N  P  S  I  I  Y  L  L  *  S  I  L   </second_frame>
            <third_frame>   Y  I  P  V  T  A  T  L  R  F  T  P  P  L  Y  L  F  P  A  A  G  S  S  F  F  S  F  V  N  S   : D  C  F  D  R  D  G  C  Q  R  E  E  E  K  H  N  *  E  V  E  E  G  C  *  R  I  L  S  F  F  G  F  *  R  *  S  C  *  L  S   : A  I  G  R  W  A  G  K  K  T  P  G  Y  *  S  T  G  K  *  S  D  N  I  V  Y  W  K  D  S  T  W  I  L  *  E  *  N  G  R :   F  L  *  A  I  W  Y  N  *  E  A  *  T  C  K  E  *  K   : D  G  K  I  K  A  F  W  L  H  R  I  *  V  P  *   : G  C  *  S  G  C  G  Y  H  A  *  L  S  I  I  *  A  L  V  A  S  S  S  Y  S  S  *  A  C  S  S  Q  I  :  V  E  R  C  E  P  L  V  Q  T  V  G  L  G  *  N  *  K  E  A  S  G  Q   : G  K  N  I  G  R  A  *  *  V  G  W  R  N  S  K  T  *  Q  K  E  A  K  E  D  R  G  S  W  D  *  L  R  V  P  R  N   : G  G  C  N  S  G  C  T  K  E  D  Q  V  H  *  L  D  L  Y  K  Y  S  S  *  T  K  *  Y  L  W  R  Q  V  D  Y  Y  V  Y  A  R  C  N  *  R  S  A  E  L  T  D  E  R  P  H  Y  F  A  A  E  *  T  N  D  I  V  K  G  S  F  S  Y  R  *  L  W  I  S  F  I  L  K  I  R  R  E  K  S  G  C  I  T  *  K  R  Q  R  K  T  L  T  I  *  S  I  D  C  I  P  *  I  H  L  S  S  I  Y  C  K  A  F  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7830" stop="7825"/>
                    <exon start="6840" stop="6721"/>
                    <exon start="5171" stop="5057"/>
                    <exon start="4931" stop="4876"/>
                    <exon start="4014" stop="3967"/>
                    <exon start="3860" stop="3763"/>
                    <exon start="2993" stop="2924"/>
                    <exon start="2741" stop="2631"/>
                    <exon start="1886" stop="1839"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILIVLTEMGAKGRKKSITKKLKKGANEFSASSVSKDKAADFLPLEGGPARKLPDTEVRESKATILYIGRIPHGFYENEMEGFFKQFGTIKRLRLARNKKTGKSKHFGFIEFESPEVAKVVADTMHNYLLFEHLLQVRLIPPEHVHPRLWKGVNRWYKPLDWVKIERKRQDKERTLEEHNKLVGEILKRDKKRRKRIEAAGIDYECPEMVGAIQAAPKKIRFTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="21016" PGL_stop="26658"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21016" e_stop="21321"/>
            <exon e_start="26261" e_stop="26658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21016" e_stop="21321" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21322" i_stop="26260" i_length="4939"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="26261" e_stop="26658" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21016" stop="21321"/>
              <exon start="26261" stop="26658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21032" stop="21321"/>
              <exon start="26261" stop="26556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21046" stop="21321"/>
              <exon start="26261" stop="26403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335980" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCTTCTGCTACTTCTACGGCTAGGGTTTTGATTTTTTCGTTGTAGCTCGCCGGTATCGATTAGTCGGAGTACGGTGGTTGTTGGATCTGCCGATGGCGGAAGAGGAGGAGAGGAACGGCGGTGAGCGGAGTGAGACGAGTGACTACACATCGGAGGATGAAGGTACTGAAGATTACAGGCGTGGAGGTTATCACGCTGTTCGAATCGGAGATACATTCAAACAAGGACGATATGTAGTGCAGAGTAAGCTTGGTTGGGGACATTTCTCTACTGTTTGGCTCGCTTGGGATACGCAAAAATCT : AGGTTTGTTGCTCTAAAAGTTCAAAAGAGTGCTCAACATTATACAGAAGCGGCTATGGATGAGATTACCATATTAAAGCAGATTGCAGAGGGAGATCCAGATGATAAGAAGTGTGTGGTGAAGTTATTGGATCACTTTAAGCATTCCGGGCCCAATGGCCAGCATGTTTGTATGGTATTCGAATACTTGGGAGATAATCTTTTGACTCTAATTAAGTACTCAGACTATCGAGGGCTATCAATTCACAAGGTTAAAGAAATTTGCTTCCATATCTTAGTGGGTTTGGATTATTTACATCGTGAGCTTTCTATTATTCACACAGACTTGAAGCCAGAAAATATTTTGCTCTTATCAATGATTGATCAAAGTAAAGATCCAACAAAGTCAGACGCTCCCCT</gDNA_template>
            <first_frame> F  F  F  C  Y  F  Y  G  *  G  F  D  F  F  V  V  A  R  R  Y  R  L  V  G  V  R  W  L  L  D  L  P  M  A  E  E  E  E  R  N  G  G  E  R  S  E  T  S  D  Y  T  S  E  D  E  G  T  E  D  Y  R  R  G  G  Y  H  A  V  R  I  G  D  T  F  K  Q  G  R  Y  V  V  Q  S  K  L  G  W  G  H  F  S  T  V  W  L  A  W  D  T  Q  K  S  :  R  F  V  A  L  K  V  Q  K  S  A  Q  H  Y  T  E  A  A  M  D  E  I  T  I  L  K  Q  I  A  E  G  D  P  D  D  K  K  C  V  V  K  L  L  D  H  F  K  H  S  G  P  N  G  Q  H  V  C  M  V  F  E  Y  L  G  D  N  L  L  T  L  I  K  Y  S  D  Y  R  G  L  S  I  H  K  V  K  E  I  C  F  H  I  L  V  G  L  D  Y  L  H  R  E  L  S  I  I  H  T  D  L  K  P  E  N  I  L  L  L  S  M  I  D  Q  S  K  D  P  T  K  S  D  A  P   </first_frame>
            <second_frame>  S  S  S  A  T  S  T  A  R  V  L  I  F  S  L  *  L  A  G  I  D  *  S  E  Y  G  G  C  W  I  C  R  W  R  K  R  R  R  G  T  A  V  S  G  V  R  R  V  T  T  H  R  R  M  K  V  L  K  I  T  G  V  E  V  I  T  L  F  E  S  E  I  H  S  N  K  D  D  M  *  C  R  V  S  L  V  G  D  I  S  L  L  F  G  S  L  G  I  R  K  N  L :   G  L  L  L  *  K  F  K  R  V  L  N  I  I  Q  K  R  L  W  M  R  L  P  Y  *  S  R  L  Q  R  E  I  Q  M  I  R  S  V  W  *  S  Y  W  I  T  L  S  I  P  G  P  M  A  S  M  F  V  W  Y  S  N  T  W  E  I  I  F  *  L  *  L  S  T  Q  T  I  E  G  Y  Q  F  T  R  L  K  K  F  A  S  I  S  *  W  V  W  I  I  Y  I  V  S  F  L  L  F  T  Q  T  *  S  Q  K  I  F  C  S  Y  Q  *  L  I  K  V  K  I  Q  Q  S  Q  T  L  P  </second_frame>
            <third_frame>   L  L  L  L  L  L  R  L  G  F  *  F  F  R  C  S  S  P  V  S  I  S  R  S  T  V  V  V  G  S  A  D  G  G  R  G  G  E  E  R  R  *  A  E  *  D  E  *  L  H  I  G  G  *  R  Y  *  R  L  Q  A  W  R  L  S  R  C  S  N  R  R  Y  I  Q  T  R  T  I  C  S  A  E  *  A  W  L  G  T  F  L  Y  C  L  A  R  L  G  Y  A  K  I   : *  V  C  C  S  K  S  S  K  E  C  S  T  L  Y  R  S  G  Y  G  *  D  Y  H  I  K  A  D  C  R  G  R  S  R  *  *  E  V  C  G  E  V  I  G  S  L  *  A  F  R  A  Q  W  P  A  C  L  Y  G  I  R  I  L  G  R  *  S  F  D  S  N  *  V  L  R  L  S  R  A  I  N  S  Q  G  *  R  N  L  L  P  Y  L  S  G  F  G  L  F  T  S  *  A  F  Y  Y  S  H  R  L  E  A  R  K  Y  F  A  L  I  N  D  *  S  K  *  R  S  N  K  V  R  R  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21043" stop="21321"/>
                    <exon start="26261" stop="26656"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFDFFVVARRYRLVGVRWLLDLPMAEEEERNGGERSETSDYTSEDEGTEDYRRGGYHAVRIGDTFKQGRYVVQSKLGWGHFSTVWLAWDTQKSRFVALKVQKSAQHYTEAAMDEITILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLSIHKVKEICFHILVGLDYLHRELSIIHTDLKPENILLLSMIDQSKDPTKSDAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26929" PGL_stop="29687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26929" e_stop="27241"/>
            <exon e_start="29297" e_stop="29344"/>
            <exon e_start="29461" e_stop="29687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.011" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26929" e_stop="27241" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="27242" i_stop="29296" i_length="2055"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29297" e_stop="29344" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.011">
            <gDNA_intron_boundary i_start="29345" i_stop="29460" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="29461" e_stop="29687" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26929" stop="27241"/>
              <exon start="29297" stop="29344"/>
              <exon start="29461" stop="29687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAACAGATGGAACAAGGGATGGACAGCAGAGAACTCAAAGATCTAAAAGAGGCAGTCGATCCATGAGGCAGAAACTATTGACTGATGTGGACCTTAGGTGCAAATTAGTTGACTTTGGCAATGCATGCTGGACGTATAAACAATTCACAAGTGATATCCAGACAAGACAGTATAGATGTCCTGAGGTTATCCTAGGATCTAAATATTCTACTTCAGCTGATCTTTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCACACAGTGGTGACAATTATGACAGGGATGAG : GATCACTTGGCCCTTATGATGGAGCTTCTTGGAATGATGCCACGCAAG : ATTGCCTTAGGTGGGCGTTATTCACGAGAGCTCTTCAACCGAAGTGGAGACTTGAGACATATCAGACGATTGCGGTTCTGGCCTATGAATAAAGTGCTTAGGGAAAAGTATGAGTTCAGTGAACAAGATGCTCATGAACTGGCTGATTTCTTAGTTCCAATACTTGATTTTGTGCCTGAGAAAAGACCTACTGCAGCTCAATGTCTCAATCATCCATGGATTGCTGA</gDNA_template>
            <first_frame> N  N  R  W  N  K  G  W  T  A  E  N  S  K  I  *  K  R  Q  S  I  H  E  A  E  T  I  D  *  C  G  P  *  V  Q  I  S  *  L  W  Q  C  M  L  D  V  *  T  I  H  K  *  Y  P  D  K  T  V  *  M  S  *  G  Y  P  R  I  *  I  F  Y  F  S  *  S  L  V  L  C  L  H  L  L  *  A  C  H  W  *  C  S  F  *  S  T  Q  W  *  Q  L  *  Q  G  *   : G  S  L  G  P  Y  D  G  A  S  W  N  D  A  T  Q   : D  C  L  R  W  A  L  F  T  R  A  L  Q  P  K  W  R  L  E  T  Y  Q  T  I  A  V  L  A  Y  E  *  S  A  *  G  K  V  *  V  Q  *  T  R  C  S  *  T  G  *  F  L  S  S  N  T  *  F  C  A  *  E  K  T  Y  C  S  S  M  S  Q  S  S  M  D  C  * </first_frame>
            <second_frame>  T  T  D  G  T  R  D  G  Q  Q  R  T  Q  R  S  K  R  G  S  R  S  M  R  Q  K  L  L  T  D  V  D  L  R  C  K  L  V  D  F  G  N  A  C  W  T  Y  K  Q  F  T  S  D  I  Q  T  R  Q  Y  R  C  P  E  V  I  L  G  S  K  Y  S  T  S  A  D  L  W  S  F  A  C  I  C  F  E  L  A  T  G  D  V  L  F  D  P  H  S  G  D  N  Y  D  R  D  E  :  D  H  L  A  L  M  M  E  L  L  G  M  M  P  R  K  :  I  A  L  G  G  R  Y  S  R  E  L  F  N  R  S  G  D  L  R  H  I  R  R  L  R  F  W  P  M  N  K  V  L  R  E  K  Y  E  F  S  E  Q  D  A  H  E  L  A  D  F  L  V  P  I  L  D  F  V  P  E  K  R  P  T  A  A  Q  C  L  N  H  P  W  I  A   </second_frame>
            <third_frame>   Q  Q  M  E  Q  G  M  D  S  R  E  L  K  D  L  K  E  A  V  D  P  *  G  R  N  Y  *  L  M  W  T  L  G  A  N  *  L  T  L  A  M  H  A  G  R  I  N  N  S  Q  V  I  S  R  Q  D  S  I  D  V  L  R  L  S  *  D  L  N  I  L  L  Q  L  I  F  G  P  L  L  A  F  A  L  S  L  P  L  V  M  F  F  L  I  H  T  V  V  T  I  M  T  G  M  R :   I  T  W  P  L  *  W  S  F  L  E  *  C  H  A  R :   L  P  *  V  G  V  I  H  E  S  S  S  T  E  V  E  T  *  D  I  S  D  D  C  G  S  G  L  *  I  K  C  L  G  K  S  M  S  S  V  N  K  M  L  M  N  W  L  I  S  *  F  Q  Y  L  I  L  C  L  R  K  D  L  L  Q  L  N  V  S  I  I  H  G  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26930" stop="27241"/>
                    <exon start="29297" stop="29344"/>
                    <exon start="29461" stop="29685"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTDGTRDGQQRTQRSKRGSRSMRQKLLTDVDLRCKLVDFGNACWTYKQFTSDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRELFNRSGDLRHIRRLRFWPMNKVLREKYEFSEQDAHELADFLVPILDFVPEKRPTAAQCLNHPWIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="36967" PGL_stop="30446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34986" e_stop="33753"/>
            <exon e_start="32843" e_stop="32761"/>
            <exon e_start="31820" e_stop="31777"/>
            <exon e_start="31670" e_stop="31552"/>
            <exon e_start="31097" e_stop="30446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34986" e_stop="33753" e_length="1234"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32843" e_stop="32761" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.901" acc_prob="0.968">
            <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31820" e_stop="31777" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.727" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31670" e_stop="31552" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="31551" i_stop="31098" i_length="454"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="31097" e_stop="30446" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34986" stop="34308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34531" stop="33808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33999" stop="33753"/>
              <exon start="32843" stop="32761"/>
              <exon start="31820" stop="31777"/>
              <exon start="31670" stop="31552"/>
              <exon start="31097" stop="30863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33998" stop="33753"/>
              <exon start="32843" stop="32761"/>
              <exon start="31820" stop="31777"/>
              <exon start="31670" stop="31552"/>
              <exon start="31097" stop="30858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33998" stop="33753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31799" stop="31777"/>
              <exon start="31670" stop="31552"/>
              <exon start="31097" stop="30645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31051" stop="30551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30938" stop="30486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30880" stop="30486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30863" stop="30549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30854" stop="30463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30847" stop="30463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30828" stop="30446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30769" stop="30486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30733" stop="30474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30714" stop="30471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG : TTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAG : GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG : TTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAG : GTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTGCCAATATAATGGCGAAAACAACAAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTACGTTATATACGTGGCCTATAACACTCGTC</gDNA_template>
            <first_frame> *  P  S  T  Q  L  H  I  T  L  L  I  S  Y  C  F  T  E  L  A  F  T  L  V  G  I  L  *  L  H  M  P  I  L  W  H  L  Q  Y  D  H  S  S  L  I  M  C  Y  S  F  P  I  M  L  F  S  C  T  L  N  L  D  I  L  I  F  C  I  *  A  L  Q  S  L  *  F  H  F  N  S  F  F  L  W  E  L  N  L  K  Y  I  S  F  A  F  T  S  N  Y  S  K  T  L  A  L  *  S  A  *  L  T  F  *  P  L  H  *  Y  F  L  H  Y  H  Y  N  I  N  M  S  K  L  T  *  T  P  *  T  R  S  D  Q  *  I  I  S  T  N  V  K  K  K  R  N  W  K  N  K  I  N  W  S  L  L  D  T  K  Y  Q  L  C  D  S  I  D  Y  A  S  V  *  L  S  R  S  Y  D  Y  I  L  I  I  E  Y  T  T  N  I  S  S  V  V  S  Q  T  V  F  E  E  G  R  V  Y  V  N  L  T  P  Y  L  E  R  *  R  Y  C  F  L  *  I  L  A  S  K  K  S  V  S  K  K  I  G  N  I  N  N  E  V  K  K  S  *  E  S  I  L  K  K  E  Q  *  L  Q  Q  N  S  V  I  T  A  V  Q  E  T  V  N  S  D  R  *  E  P  G  E  K  L  H  T  L  S  L  K  C  I  E  G  N  L  *  V  I  H  F  F  L  I  H  T  T  H  T  S  Y  I  L  N  F  I  F  M  A  N  Y  M  T  V  R  A  *  W  S  K  Q  *  K  I  *  K  Q  I  I  K  F  L  V  H  N  K  A  F  F  Y  D  H  I  E  N  L  E  P  S  F  P  D  L  S  V  L  N  I  S  L  V  S  Y  *  N  R  F  P  F  V  H  P  T  A  D  V  N  L  A  M  V  K  L  K  G  S  L  I  L  Q  K  K  W  K  T  Q  L  L  *  T  *   : V  L  E  G  L  R  *  A  D  L  S  *  F  Y  R  L  E  H  F  V  L  L  L  V  L  W  *  Q  :  V  Y  L  A  *  T  *  D  P  I  *  R  N  M  C :   L  H  S  G  L  Q  Q  Q  E  *  L  L  G  L  F  W  P  F  I  S  C  T  G  I  S  E  R  G  K  Y  C  K  Q  R  L  I  P  Q  S   : G  D  V  N  L  *  P  R  L  S  F  Q  L  Q  W  V  P  K  K  M  P  H  I  L  A  Y  S  A  A  C  L  D  S  R  I  I  V  H  Q  Y  D  A  S  Q  T  L  P  I  *  W  R  K  Q  Q  N  *  V  C  N  M  S  P  V  K  I  R  R  M  R  E  K  A  T  I  *  S  S  S  S  Y  I  P  W  V  P  I  R  S  S  H  H  S  L  L  P  A  C  Y  V  V  *  H  N  L  P  P  H  V  A  K  T  F  R  Q  R  R  Y  C  V  R  K  S  L  Y  M  S  *  E  Y  I  K  K  R  I  S  S  F  V  *  G  Y  V  N  H  P  L  H  A  L  R  V  K  C  H  C  A  C  C  W  L  *  T  Q  Y  M  L  V  A  S  K  L  N  K  C  A  I  *  E  D  F  S  Y  H  F  L  F  P  S  Q  V  L  T  I  M  I  F  D  I  I  T  P  F  D  I  N  L  S  L  R  Y  I  R  G  L  *  H  S   </first_frame>
            <second_frame>  D  L  P  L  N  S  T  *  L  C  *  S  H  I  V  L  Q  N  S  L  L  L  W  *  A  S  Y  S  C  I  C  Q  Y  C  G  T  F  S  M  I  I  L  V  *  S  C  V  T  A  F  L  L  C  F  S  P  A  H  *  T  *  I  S  *  F  F  A  F  R  H  Y  N  P  F  S  S  T  S  T  H  F  S  Y  G  S  *  T  *  S  T  Y  L  L  P  S  L  L  I  I  L  K  P  L  L  S  R  V  H  N  *  L  F  N  H  C  T  N  I  F  F  T  I  I  I  I  *  I  C  Q  N  *  L  K  L  H  K  L  G  Q  T  N  R  *  Y  L  Q  M  *  R  R  K  E  I  G  K  I  R  *  I  G  P  Y  *  T  R  S  I  N  S  V  T  R  L  I  M  Q  V  Y  N  *  V  G  V  M  I  I  F  L  *  *  N  T  P  P  T  Y  L  V  *  S  H  K  Q  C  L  R  R  V  E  C  T  *  T  L  P  L  I  L  R  G  R  D  I  V  S  Y  R  S  S  P  Q  R  K  A  Y  Q  R  R  S  E  T  *  I  T  K  *  R  N  H  R  K  A  F  *  R  K  N  S  N  Y  N  K  I  V  *  *  P  Q  Y  K  R  Q  *  I  V  I  D  K  N  L  E  R  N  C  I  R  Y  P  *  S  A  L  K  V  I  F  K  *  S  T  F  F  L  Y  I  P  L  T  L  P  I  F  *  I  L  Y  S  W  Q  I  I  *  Q  L  E  H  S  G  P  N  N  K  K  F  K  S  K  *  S  N  F  W  S  T  I  K  H  F  F  M  I  I  *  K  I  L  S  H  P  F  L  I  C  L  Y  *  I  L  V  W  *  V  T  E  T  G  F  H  L  F  I  Q  L  Q  M  *  I  L  P  W  S  S  *  K  A  P  *  F  C  K  R  N  G  R  L  N  C  C  K  L  E  :  F  S  K  A  *  G  E  Q  I  *  V  D  S  T  G  W  N  I  L  C  C  C  W  C  S  G  S  R :   Y  I  W  H  E  L  K  I  L  S  R  G  T  C   : V  C  I  L  A  Y  N  S  R  N  N  C  W  G  C  S  G  L  L  S  H  V  L  V  S  Q  N  E  E  N  T  V  N  N  A  *  F  H  N  Q  :  V  M  *  I  F  N  Q  D  *  A  F  N  C  S  G  C  P  K  R  C  R  I  Y  *  H  I  L  Q  H  V  W  I  V  G  S  L  C  I  N  M  M  L  R  R  H  C  Q  Y  N  G  E  N  N  K  I  R  Y  A  I  C  P  Q  S  R  S  V  E  *  E  R  R  R  Q  S  N  L  P  Q  V  I  Y  H  G  C  Q  L  G  V  A  I  T  L  F  Y  Q  L  V  M  *  S  S  I  I  S  H  H  T  L  P  R  H  S  D  S  E  D  I  A  S  V  K  A  Y  I  *  A  E  N  I  S  K  R  E  S  L  A  L  F  E  A  M  *  T  T  L  F  M  P  Y  V  *  N  V  I  V  H  V  A  G  F  E  H  S  I  C  *  W  R  V  S  *  T  S  V  P  F  E  K  T  S  H  I  I  S  S  F  L  A  K  C  *  Q  *  *  Y  L  I  *  L  P  L  L  I  *  I  Y  L  Y  V  I  Y  V  A  Y  N  T  R  </second_frame>
            <third_frame>   T  F  H  S  T  P  H  N  F  V  N  L  I  L  F  Y  R  T  R  F  Y  F  G  R  H  L  I  V  A  Y  A  N  I  V  A  P  S  V  *  S  F  *  F  N  H  V  L  Q  L  S  Y  Y  A  F  L  L  H  T  E  P  R  Y  L  D  F  L  H  L  G  T  T  I  P  L  V  P  L  Q  L  I  F  L  M  G  A  K  P  K  V  H  I  F  C  L  H  F  *  L  F  *  N  P  C  S  L  E  C  I  T  N  F  L  T  T  A  L  I  F  S  S  L  S  L  *  Y  K  Y  V  K  I  N  L  N  S  I  N  *  V  R  P  I  D  N  I  Y  K  C  E  E  E  K  K  L  E  K  *  D  K  L  V  L  I  R  H  E  V  S  T  L  *  L  D  *  L  C  K  C  I  T  E  *  E  L  *  L  Y  S  Y  N  R  I  H  H  Q  H  I  *  C  S  L  T  N  S  V  *  G  G  *  S  V  R  K  P  Y  P  L  S  *  E  V  E  I  L  F  P  I  D  P  R  L  K  E  K  R  I  K  E  D  R  K  H  K  *  R  S  E  E  I  I  G  K  H  S  E  E  R  T  V  I  T  T  K  *  C  D  N  R  S  T  R  D  S  E  *  *  *  I  R  T  W  R  E  T  A  Y  A  I  L  E  V  H  *  R  *  S  L  S  N  P  L  F  S  Y  T  Y  H  S  H  F  L  Y  F  E  F  Y  I  H  G  K  L  Y  D  S  *  S  I  V  V  Q  T  I  K  N  L  K  A  N  N  Q  I  F  G  P  Q  *  S  I  F  L  *  S  Y  R  K  S  *  A  I  L  S  *  F  V  C  T  K  Y  *  F  G  K  L  L  K  Q  V  S  I  C  S  S  N  C  R  C  E  S  C  H  G  Q  A  E  R  L  L  D  S  A  K  E  M  E  D  S  I  A  V  N  L  S :   S  R  R  L  E  V  S  R  F  E  L  I  L  Q  V  G  T  F  C  V  A  V  G  A  L  V  A   : G  I  F  G  M  N  L  R  S  Y  L  E  E  H  V  :  F  A  F  W  L  T  T  A  G  I  I  V  G  A  V  L  A  F  Y  L  M  Y  W  Y  L  R  T  R  K  I  L  *  T  T  P  D  S  T  I  R :   *  C  K  S  L  T  K  I  E  L  S  T  A  V  G  A  Q  K  D  A  A  Y  T  S  I  F  C  S  M  S  G  *  *  D  H  C  A  S  I  *  C  F  A  D  T  A  N  I  M  A  K  T  T  K  L  G  M  Q  Y  V  P  S  Q  D  P  *  N  E  R  E  G  D  N  L  I  F  L  K  L  Y  T  M  G  A  N  *  E  *  P  S  L  S  F  T  S  L  L  C  S  L  A  *  S  P  T  T  R  C  Q  D  I  Q  T  A  K  I  L  R  P  *  K  L  I  Y  E  L  R  I  Y  Q  K  E  N  L  *  L  C  L  R  L  C  K  P  P  S  S  C  L  T  C  E  M  S  L  C  M  L  L  A  L  N  T  V  Y  A  S  G  E  *  V  E  Q  V  C  H  L  R  R  L  L  I  S  F  P  L  S  *  P  S  V  D  N  N  D  I  *  Y  N  Y  P  F  *  Y  K  F  I  F  T  L  Y  T  W  P  I  T  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33880" stop="33753"/>
                    <exon start="32843" stop="32761"/>
                    <exon start="31820" stop="31777"/>
                    <exon start="31670" stop="31575"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGKLLKQVSICSSNCRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRFELILQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVLAFYLMYWYLRTRKIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36967" e_stop="36922"/>
            <exon e_start="36512" e_stop="36432"/>
            <exon e_start="36350" e_stop="36185"/>
            <exon e_start="36092" e_stop="36047"/>
            <exon e_start="33833" e_stop="33753"/>
            <exon e_start="32843" e_stop="32761"/>
            <exon e_start="31820" e_stop="31777"/>
            <exon e_start="31670" e_stop="31552"/>
            <exon e_start="31097" e_stop="30446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.799" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.162" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36967" e_stop="36922" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.799" acc_prob="0.984">
            <gDNA_intron_boundary i_start="36921" i_stop="36513" i_length="409"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36512" e_stop="36432" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36431" i_stop="36351" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36350" e_stop="36185" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36184" i_stop="36093" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36092" e_stop="36047" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.162" acc_prob="0.976">
            <gDNA_intron_boundary i_start="36046" i_stop="33834" i_length="2213"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33833" e_stop="33753" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32843" e_stop="32761" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.901" acc_prob="0.968">
            <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31820" e_stop="31777" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.727" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31670" e_stop="31552" e_length="119"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="31551" i_stop="31098" i_length="454"/>
          </intron>
          <exon e_serial="9" e_score="0.986">
            <gDNA_exon_boundary e_start="31097" e_stop="30446" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36967" stop="36922"/>
              <exon start="36512" stop="36432"/>
              <exon start="36350" stop="36185"/>
              <exon start="36092" stop="36047"/>
              <exon start="33833" stop="33753"/>
              <exon start="32843" stop="32761"/>
              <exon start="31820" stop="31777"/>
              <exon start="31670" stop="31552"/>
              <exon start="31097" stop="31016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36967" stop="36922"/>
              <exon start="36512" stop="36432"/>
              <exon start="36350" stop="36185"/>
              <exon start="36092" stop="36047"/>
              <exon start="33833" stop="33753"/>
              <exon start="32843" stop="32761"/>
              <exon start="31820" stop="31777"/>
              <exon start="31670" stop="31658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36512" stop="36432"/>
              <exon start="36350" stop="36185"/>
              <exon start="36092" stop="36047"/>
              <exon start="33833" stop="33753"/>
              <exon start="32843" stop="32761"/>
              <exon start="31820" stop="31777"/>
              <exon start="31670" stop="31664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36350" stop="36185"/>
              <exon start="36092" stop="36047"/>
              <exon start="33833" stop="33753"/>
              <exon start="32843" stop="32761"/>
              <exon start="31820" stop="31777"/>
              <exon start="31670" stop="31552"/>
              <exon start="31097" stop="30971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36252" stop="36185"/>
              <exon start="36092" stop="36047"/>
              <exon start="33833" stop="33753"/>
              <exon start="32843" stop="32761"/>
              <exon start="31820" stop="31777"/>
              <exon start="31670" stop="31552"/>
              <exon start="31097" stop="30967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31799" stop="31777"/>
              <exon start="31670" stop="31552"/>
              <exon start="31097" stop="30645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31051" stop="30551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30938" stop="30486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30880" stop="30486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30863" stop="30549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30854" stop="30463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30847" stop="30463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30828" stop="30446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30769" stop="30486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30733" stop="30474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30714" stop="30471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGATACAAAGATTGGAACATAGGCTGTGGGATTTAGAACCACGT : GTCCAAGCACTACTTGAGGTTTTGCCCAACCGATTAACTGCAGACATATTGGAGGAACTTCGCATCAGTAAACAGAAACTA : GTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCAAATCTGTATAATTGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAG : AAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAG : ATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG : TTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAG : GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG : TTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAG : GTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTGCCAATATAATGGCGAAAACAACAAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTACGTTATATACGTGGCCTATAACACTCGTC</gDNA_template>
            <first_frame> T  D  T  K  I  G  T  *  A  V  G  F  R  T  T   : C  P  S  T  T  *  G  F  A  Q  P  I  N  C  R  H  I  G  G  T  S  H  Q  *  T  E  T   : S  G  I  G  F  Q  G  R  G  S  *  A  N  A  T  *  Y  S  R  G  Y  S  *  N  T  S  N  L  Y  N  W  E  K  L  C  T  *  E  R  K  R  *  D  R  V  L  G  A  P  R  *  G  H  C  R  R :   R  R  G  R  N  *  N  A  F  G  E  L  S  S  E  :  M  *  I  L  P  W  S  S  *  K  A  P  *  F  C  K  R  N  G  R  L  N  C  C  K  L  E  :  F  S  K  A  *  G  E  Q  I  *  V  D  S  T  G  W  N  I  L  C  C  C  W  C  S  G  S  R :   Y  I  W  H  E  L  K  I  L  S  R  G  T  C   : V  C  I  L  A  Y  N  S  R  N  N  C  W  G  C  S  G  L  L  S  H  V  L  V  S  Q  N  E  E  N  T  V  N  N  A  *  F  H  N  Q  :  V  M  *  I  F  N  Q  D  *  A  F  N  C  S  G  C  P  K  R  C  R  I  Y  *  H  I  L  Q  H  V  W  I  V  G  S  L  C  I  N  M  M  L  R  R  H  C  Q  Y  N  G  E  N  N  K  I  R  Y  A  I  C  P  Q  S  R  S  V  E  *  E  R  R  R  Q  S  N  L  P  Q  V  I  Y  H  G  C  Q  L  G  V  A  I  T  L  F  Y  Q  L  V  M  *  S  S  I  I  S  H  H  T  L  P  R  H  S  D  S  E  D  I  A  S  V  K  A  Y  I  *  A  E  N  I  S  K  R  E  S  L  A  L  F  E  A  M  *  T  T  L  F  M  P  Y  V  *  N  V  I  V  H  V  A  G  F  E  H  S  I  C  *  W  R  V  S  *  T  S  V  P  F  E  K  T  S  H  I  I  S  S  F  L  A  K  C  *  Q  *  *  Y  L  I  *  L  P  L  L  I  *  I  Y  L  Y  V  I  Y  V  A  Y  N  T  R  </first_frame>
            <second_frame>  R  I  Q  R  L  E  H  R  L  W  D  L  E  P  R  :  V  Q  A  L  L  E  V  L  P  N  R  L  T  A  D  I  L  E  E  L  R  I  S  K  Q  K  L  :  V  E  L  G  S  R  A  G  A  L  K  Q  M  L  L  D  I  L  E  D  T  H  E  I  R  Q  I  C  I  I  G  R  N  C  V  L  K  K  E  N  D  E  I  E  C  S  V  P  L  D  K  D  I  A  E   : E  E  E  E  E  I  E  M  L  L  E  N  Y  L  Q  R :   C  E  S  C  H  G  Q  A  E  R  L  L  D  S  A  K  E  M  E  D  S  I  A  V  N  L  S :   S  R  R  L  E  V  S  R  F  E  L  I  L  Q  V  G  T  F  C  V  A  V  G  A  L  V  A   : G  I  F  G  M  N  L  R  S  Y  L  E  E  H  V  :  F  A  F  W  L  T  T  A  G  I  I  V  G  A  V  L  A  F  Y  L  M  Y  W  Y  L  R  T  R  K  I  L  *  T  T  P  D  S  T  I  R :   *  C  K  S  L  T  K  I  E  L  S  T  A  V  G  A  Q  K  D  A  A  Y  T  S  I  F  C  S  M  S  G  *  *  D  H  C  A  S  I  *  C  F  A  D  T  A  N  I  M  A  K  T  T  K  L  G  M  Q  Y  V  P  S  Q  D  P  *  N  E  R  E  G  D  N  L  I  F  L  K  L  Y  T  M  G  A  N  *  E  *  P  S  L  S  F  T  S  L  L  C  S  L  A  *  S  P  T  T  R  C  Q  D  I  Q  T  A  K  I  L  R  P  *  K  L  I  Y  E  L  R  I  Y  Q  K  E  N  L  *  L  C  L  R  L  C  K  P  P  S  S  C  L  T  C  E  M  S  L  C  M  L  L  A  L  N  T  V  Y  A  S  G  E  *  V  E  Q  V  C  H  L  R  R  L  L  I  S  F  P  L  S  *  P  S  V  D  N  N  D  I  *  Y  N  Y  P  F  *  Y  K  F  I  F  T  L  Y  T  W  P  I  T  L  V </second_frame>
            <third_frame>   G  Y  K  D  W  N  I  G  C  G  I  *  N  H  V :   S  K  H  Y  L  R  F  C  P  T  D  *  L  Q  T  Y  W  R  N  F  A  S  V  N  R  N  * :   W  N  W  V  P  G  Q  G  L  L  S  K  C  Y  L  I  F  *  R  I  L  M  K  Y  V  K  S  V  *  L  G  E  I  V  Y  L  R  K  K  T  M  R  *  S  A  R  C  P  *  I  R  T  L  Q  K  :  K  K  R  K  K  L  K  C  F  W  R  I  I  F  R   : D  V  N  L  A  M  V  K  L  K  G  S  L  I  L  Q  K  K  W  K  T  Q  L  L  *  T  *   : V  L  E  G  L  R  *  A  D  L  S  *  F  Y  R  L  E  H  F  V  L  L  L  V  L  W  *  Q  :  V  Y  L  A  *  T  *  D  P  I  *  R  N  M  C :   L  H  S  G  L  Q  Q  Q  E  *  L  L  G  L  F  W  P  F  I  S  C  T  G  I  S  E  R  G  K  Y  C  K  Q  R  L  I  P  Q  S   : G  D  V  N  L  *  P  R  L  S  F  Q  L  Q  W  V  P  K  K  M  P  H  I  L  A  Y  S  A  A  C  L  D  S  R  I  I  V  H  Q  Y  D  A  S  Q  T  L  P  I  *  W  R  K  Q  Q  N  *  V  C  N  M  S  P  V  K  I  R  R  M  R  E  K  A  T  I  *  S  S  S  S  Y  I  P  W  V  P  I  R  S  S  H  H  S  L  L  P  A  C  Y  V  V  *  H  N  L  P  P  H  V  A  K  T  F  R  Q  R  R  Y  C  V  R  K  S  L  Y  M  S  *  E  Y  I  K  K  R  I  S  S  F  V  *  G  Y  V  N  H  P  L  H  A  L  R  V  K  C  H  C  A  C  C  W  L  *  T  Q  Y  M  L  V  A  S  K  L  N  K  C  A  I  *  E  D  F  S  Y  H  F  L  F  P  S  Q  V  L  T  I  M  I  F  D  I  I  T  P  F  D  I  N  L  S  L  R  Y  I  R  G  L  *  H  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36966" stop="36922"/>
                    <exon start="36512" stop="36432"/>
                    <exon start="36350" stop="36185"/>
                    <exon start="36092" stop="36047"/>
                    <exon start="33833" stop="33753"/>
                    <exon start="32843" stop="32761"/>
                    <exon start="31820" stop="31777"/>
                    <exon start="31670" stop="31575"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIQRLEHRLWDLEPRVQALLEVLPNRLTADILEELRISKQKLVELGSRAGALKQMLLDILEDTHEIRQICIIGRNCVLKKENDEIECSVPLDKDIAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRFELILQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVLAFYLMYWYLRTRKIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="30458" PGL_stop="30737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30458" e_stop="30737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="30458" e_stop="30737" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30458" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCCACGTATATAACGTAAAGATAAATTTATATCAAAAGGGGTAATTATATCAAATATCATTATTGTCAACACTTGGCTAGGAAAGAGGAAATGATATGAGAAGTCTTCTCAAATGGCACACTTGTTCAACTTACTCGCCACTAGCATATACTGTGTTCAAAGCCAGCAACATGCACAATGACATTTCACACGTAAGGCATGAAGAGGGTGGTTTACATAGCCTCAAACAAAGCTAGAGATTCTCTTTTTGATATATTCTCAGCTCATATATAAGCTTT</gDNA_template>
            <first_frame> R  P  R  I  *  R  K  D  K  F  I  S  K  G  V  I  I  S  N  I  I  I  V  N  T  W  L  G  K  R  K  *  Y  E  K  S  S  Q  M  A  H  L  F  N  L  L  A  T  S  I  Y  C  V  Q  S  Q  Q  H  A  Q  *  H  F  T  R  K  A  *  R  G  W  F  T  *  P  Q  T  K  L  E  I  L  F  L  I  Y  S  Q  L  I  Y  K  L  </first_frame>
            <second_frame>  G  H  V  Y  N  V  K  I  N  L  Y  Q  K  G  *  L  Y  Q  I  S  L  L  S  T  L  G  *  E  R  G  N  D  M  R  S  L  L  K  W  H  T  C  S  T  Y  S  P  L  A  Y  T  V  F  K  A  S  N  M  H  N  D  I  S  H  V  R  H  E  E  G  G  L  H  S  L  K  Q  S  *  R  F  S  F  *  Y  I  L  S  S  Y  I  S  F </second_frame>
            <third_frame>   A  T  Y  I  T  *  R  *  I  Y  I  K  R  G  N  Y  I  K  Y  H  Y  C  Q  H  L  A  R  K  E  E  M  I  *  E  V  F  S  N  G  T  L  V  Q  L  T  R  H  *  H  I  L  C  S  K  P  A  T  C  T  M  T  F  H  T  *  G  M  K  R  V  V  Y  I  A  S  N  K  A  R  D  S  L  F  D  I  F  S  A  H  I  *  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0072I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="40637" PGL_stop="37528"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40637" e_stop="40177"/>
            <exon e_start="39052" e_stop="38980"/>
            <exon e_start="38558" e_stop="38488"/>
            <exon e_start="37758" e_stop="37673"/>
            <exon e_start="37591" e_stop="37528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.934" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.894" e_score="0.972"/>
          <exon-intron don_prob="0.371" acc_prob="0.900" e_score="0.965"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40637" e_stop="40177" e_length="461"/>
          </exon>
          <intron i_serial="1" don_prob="0.934" acc_prob="0.962">
            <gDNA_intron_boundary i_start="40176" i_stop="39053" i_length="1124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39052" e_stop="38980" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.943">
            <gDNA_intron_boundary i_start="38979" i_stop="38559" i_length="421"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="38558" e_stop="38488" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.943" acc_prob="0.894">
            <gDNA_intron_boundary i_start="38487" i_stop="37759" i_length="729"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="37758" e_stop="37673" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.371" acc_prob="0.900">
            <gDNA_intron_boundary i_start="37672" i_stop="37592" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="37591" e_stop="37528" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40637" stop="40177"/>
              <exon start="39052" stop="38986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40596" stop="40177"/>
              <exon start="39052" stop="38980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40596" stop="40177"/>
              <exon start="39052" stop="38980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40584" stop="40239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40579" stop="40177"/>
              <exon start="39052" stop="38980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40579" stop="40177"/>
              <exon start="39052" stop="39019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40497" stop="40177"/>
              <exon start="39052" stop="38980"/>
              <exon start="38558" stop="38488"/>
              <exon start="37758" stop="37673"/>
              <exon start="37591" stop="37528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACCATTATAACCCTCACATTATCCATATGAATTGGGGAAATATCTAGAAGATTCTCGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAG : GTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGTCCAGTG : GATTACGTCCTCGAGATATCAGGAGTGTTGATCCGTCATTATGGTTGACAAATTCAATGCCTGCTTTATTG : GTCCGTGAGCATGCAATTCTATTGAATCTAGGTTCTTTACGAGCCATAGTAATGCAAGAGCGAGTCCTTATATTTAATTATAATCG : TCTAGGAGGAAAGGCTTTCATCGATTCATTGTTACCACGGCTAAATCCTACAAGCACAAATGGA</gDNA_template>
            <first_frame> N  T  I  I  T  L  T  L  S  I  *  I  G  E  I  S  R  R  F  S  R  S  L  N  S  Y  R  D  L  R  Q  L  S  L  Q  W  R  Q  M  L  C  I  Y  F  S  Y  R  F  D  R  R  S  F  D  F  *  L  Q  E  D  T  R  F  S  G  R  R  W  S  F  R  S  R  V  R  I  T  R  F  L  *  E  L  G  R  *  E  *  L  S  V  L  R  N  R  L  R  W  K  R  *  *  R  T  V  E  M  M  I  M  M  K  V  M  R  F  G  E  M  M  I  R  L  *  L  M  E  T  L  L  V  R  R  G  V  L  L  P  P  V  A  I  R  C  P  L  E  S  V  N  L  F  M  R :   *  W  R  *  R  R  V  G  R  *  Q  K  G  K  *  T  E  G  T  C  *  S  P  V  :  D  Y  V  L  E  I  S  G  V  L  I  R  H  Y  G  *  Q  I  Q  C  L  L  Y  W :   S  V  S  M  Q  F  Y  *  I  *  V  L  Y  E  P  *  *  C  K  S  E  S  L  Y  L  I  I  I   : V  *  E  E  R  L  S  S  I  H  C  Y  H  G  *  I  L  Q  A  Q  M   </first_frame>
            <second_frame>  T  P  L  *  P  S  H  Y  P  Y  E  L  G  K  Y  L  E  D  S  R  D  L  S  T  L  I  V  I  S  G  S  F  L  C  N  G  G  K  C  S  V  F  T  S  V  T  G  S  I  A  G  V  S  I  F  D  Y  R  R  I  R  D  F  P  V  E  D  G  V  S  V  L  A  *  E  S  R  D  F  S  E  S  S  E  G  E  S  S  *  V  C  C  E  I  D  *  D  G  S  V  D  E  G  R  W  R  *  *  *  *  *  R  *  *  G  S  G  R  *  *  *  G  C  N  S  W  R  L  C  *  F  A  E  E  C  F  C  L  R  W  R  F  V  V  P  W  N  P  *  T  C  L  *   : G  S  G  G  K  D  V  W  D  G  S  K  K  E  N  K  Q  K  A  L  A  E  V  Q  W :   I  T  S  S  R  Y  Q  E  C  *  S  V  I  M  V  D  K  F  N  A  C  F  I   : G  P  *  A  C  N  S  I  E  S  R  F  F  T  S  H  S  N  A  R  A  S  P  Y  I  *  L  *  S  :  S  R  R  K  G  F  H  R  F  I  V  T  T  A  K  S  Y  K  H  K  W  </second_frame>
            <third_frame>   H  H  Y  N  P  H  I  I  H  M  N  W  G  N  I  *  K  I  L  E  I  S  Q  L  L  S  *  S  P  A  A  F  S  A  M  A  A  N  A  L  Y  L  L  Q  L  P  V  R  S  P  E  F  R  F  L  I  T  G  G  Y  A  I  F  R  S  K  M  E  F  P  F  S  R  K  N  H  A  I  S  L  R  A  R  K  V  R  V  V  E  C  V  A  K  S  T  E  M  E  A  L  M  K  D  G  G  D  D  D  N  D  E  G  D  E  V  R  G  D  D  D  K  V  V  T  H  G  D  S  V  S  S  Q  R  S  A  S  A  S  G  G  D  S  L  S  L  G  I  R  E  P  V  Y  E  :  V  V  E  V  K  T  C  G  T  V  A  K  R  K  I  N  R  R  H  L  L  K  S  S   : G  L  R  P  R  D  I  R  S  V  D  P  S  L  W  L  T  N  S  M  P  A  L  L  :  V  R  E  H  A  I  L  L  N  L  G  S  L  R  A  I  V  M  Q  E  R  V  L  I  F  N  Y  N  R :   L  G  G  K  A  F  I  D  S  L  L  P  R  L  N  P  T  S  T  N  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40554" stop="40177"/>
                    <exon start="39052" stop="38980"/>
                    <exon start="38558" stop="38488"/>
                    <exon start="37758" stop="37673"/>
                    <exon start="37591" stop="37528"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPAAFSAMAANALYLLQLPVRSPEFRFLITGGYAIFRSKMEFPFSRKNHAISLRARKVRVVECVAKSTEMEALMKDGGDDDNDEGDEVRGDDDKVVTHGDSVSSQRSASASGGDSLSLGIREPVYEVVEVKTCGTVAKRKINRRHLLKSSGLRPRDIRSVDPSLWLTNSMPALLVREHAILLNLGSLRAIVMQERVLIFNYNRLGGKAFIDSLLPRLNPTSTNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="45934" PGL_stop="47532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45934" e_stop="47532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="45934" e_stop="47532" e_length="1599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45934" stop="46731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45934" stop="46455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45939" stop="46620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46003" stop="46759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46007" stop="46716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46010" stop="46583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46031" stop="46592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46031" stop="46579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46032" stop="46779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46032" stop="46668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46039" stop="46762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46047" stop="46613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46048" stop="46733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46049" stop="46813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46059" stop="46579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46059" stop="46519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46154" stop="46717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46319" stop="46996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46434" stop="46979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46824" stop="47495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46824" stop="47254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47125" stop="47532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415398" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATAAGAGTACCTTAGAGCCAACCAAAAATTCAAAAAACATCTAAAAATTTGCCCAACATATTAAATACTAACTTGTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAGCTTCAGGTTTTAAGCATTGGGCTCTTGGTCCATTCAATCCTGTAAATCTGGAATTTGAGAAAAAGGAAAACCGCCATTATTCACTTGAGTGGCTTGATAAACAACCAGCTAGCTCGGTGATTTTCGTTTCCTTTGGATCAACGACTTCGTTATCCGAAGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTTCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATGTCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTTTAGGTCACCCGTCTACGGGTGGATTCATGAGTCATTGCGGGTGGAATTCTTGTATGGAGAGTATTACAATGGGAGTTCCAATCGCGGCATGGCCAATGCATTCTGATCAGCCTAGAAATGCGTTGTTCATAACTGAAGGACTGAAAACGGGGATATGGGTGAGAAAATGGGAGCAACGAAACGAAGTGATCCCAGCAGAGACTGTTGAGAAAGTTGTACGAACGTTAATCGCCTCTCCGGAGGGAGCGGAGATGAAACGAAATGCTACAGCGATCAAGGAAGCAGTGAAATTATCGGTAATGGAGGGTGGGGTAACGCAGCAGGAAATGAAATCTTTTGTTGCCCACATTACTAGATAGATTTTTTTTCCCGTTTAATATTGGTGATGTTCGTGCTAGTTTATGCGCACTTTAACCTTTGATCCTGTGTCGAAATAAATATTTTGAATAACTCTATCAATCTATCGA</gDNA_template>
            <first_frame> K  *  E  Y  L  R  A  N  Q  K  F  K  K  H  L  K  I  C  P  T  Y  *  I  L  T  C  L  P  K  M  A  A  A  T  T  N  H  V  E  Q  Q  H  D  V  V  V  V  V  V  P  L  P  A  Q  G  H  L  H  A  A  I  E  L  S  H  R  I  S  S  A  N  I  P  V  Y  Y  V  S  T  A  A  H  V  R  Q  A  Q  S  R  A  V  G  W  D  P  L  N  T  T  N  L  N  F  I  D  F  P  V  T  F  E  V  P  P  P  N  P  D  A  S  I  K  F  P  S  Q  L  V  P  A  F  N  S  S  L  Q  L  R  E  P  V  T  D  L  V  N  K  L  A  S  T  S  R  R  V  V  V  I  H  D  F  L  T  S  W  V  V  Q  D  V  P  K  I  P  N  A  E  C  Y  C  L  H  T  V  S  A  F  L  V  F  S  Y  I  W  D  A  A  R  P  P  V  P  P  E  A  E  A  V  L  K  Q  L  P  S  L  D  G  C  N  S  P  E  L  E  E  F  A  K  K  Q  I  A  A  R  V  P  G  V  G  N  I  F  S  T  S  R  V  I  E  G  L  Y  I  D  L  M  D  R  M  M  G  A  S  G  F  K  H  W  A  L  G  P  F  N  P  V  N  L  E  F  E  K  K  E  N  R  H  Y  S  L  E  W  L  D  K  Q  P  A  S  S  V  I  F  V  S  F  G  S  T  T  S  L  S  E  D  E  I  R  E  L  A  I  G  L  E  A  S  Q  Q  R  F  I  W  V  L  R  D  A  D  K  G  D  I  F  S  G  E  V  R  K  C  Q  L  P  E  G  Y  E  K  R  V  S  E  R  G  L  V  M  R  D  W  A  P  Q  L  E  I  L  G  H  P  S  T  G  G  F  M  S  H  C  G  W  N  S  C  M  E  S  I  T  M  G  V  P  I  A  A  W  P  M  H  S  D  Q  P  R  N  A  L  F  I  T  E  G  L  K  T  G  I  W  V  R  K  W  E  Q  R  N  E  V  I  P  A  E  T  V  E  K  V  V  R  T  L  I  A  S  P  E  G  A  E  M  K  R  N  A  T  A  I  K  E  A  V  K  L  S  V  M  E  G  G  V  T  Q  Q  E  M  K  S  F  V  A  H  I  T  R  *  I  F  F  P  V  *  Y  W  *  C  S  C  *  F  M  R  T  L  T  F  D  P  V  S  K  *  I  F  *  I  T  L  S  I  Y  R </first_frame>
            <second_frame>  N  K  S  T  L  E  P  T  K  N  S  K  N  I  *  K  F  A  Q  H  I  K  Y  *  L  V  F  Q  K  W  Q  Q  Q  Q  Q  T  M  L  N  N  N  T  T  S  L  *  L  *  F  L  F  L  H  K  A  I  S  T  Q  P  S  N  S  P  T  A  S  P  P  P  T  S  L  F  T  T  S  A  P  P  L  T  S  V  K  L  S  R  V  L  S  A  G  I  H  *  T  P  Q  I  S  I  S  L  I  F  R  *  H  S  R  Y  L  L  L  I  Q  M  H  P  S  N  S  L  L  N  L  F  L  L  S  I  L  H  C  N  S  V  N  Q  L  Q  I  W  *  I  N  W  L  Q  H  R  E  E  L  L  *  F  M  I  F  S  L  H  G  L  F  K  M  Y  Q  K  Y  P  M  Q  S  V  T  V  Y  T  L  F  L  L  F  L  C  F  L  I  S  G  M  L  L  D  H  L  Y  L  L  K  L  K  L  Y  L  N  N  F  R  L  S  M  V  V  I  L  L  N  S  K  N  L  L  R  S  K  *  L  Q  E  F  L  A  L  E  I  F  S  V  H  L  E  L  S  K  D  C  I  L  I  *  W  I  E  *  W  E  L  Q  V  L  S  I  G  L  L  V  H  S  I  L  *  I  W  N  L  R  K  R  K  T  A  I  I  H  L  S  G  L  I  N  N  Q  L  A  R  *  F  S  F  P  L  D  Q  R  L  R  Y  P  K  M  K  S  E  S  *  L  L  G  W  K  Q  V  N  R  D  L  S  G  F  *  G  T  Q  I  K  E  I  Y  S  P  V  K  F  E  N  V  N  C  L  K  D  M  R  R  G  Y  R  K  E  D  L  *  *  E  I  G  H  H  N  W  K  F  *  V  T  R  L  R  V  D  S  *  V  I  A  G  G  I  L  V  W  R  V  L  Q  W  E  F  Q  S  R  H  G  Q  C  I  L  I  S  L  E  M  R  C  S  *  L  K  D  *  K  R  G  Y  G  *  E  N  G  S  N  E  T  K  *  S  Q  Q  R  L  L  R  K  L  Y  E  R  *  S  P  L  R  R  E  R  R  *  N  E  M  L  Q  R  S  R  K  Q  *  N  Y  R  *  W  R  V  G  *  R  S  R  K  *  N  L  L  L  P  T  L  L  D  R  F  F  F  P  F  N  I  G  D  V  R  A  S  L  C  A  L  *  P  L  I  L  C  R  N  K  Y  F  E  *  L  Y  Q  S  I   </second_frame>
            <third_frame>   I  R  V  P  *  S  Q  P  K  I  Q  K  T  S  K  N  L  P  N  I  L  N  T  N  L  S  S  K  N  G  S  S  N  N  K  P  C  *  T  T  T  R  R  R  C  S  C  S  S  S  S  C  T  R  P  S  P  R  S  H  R  T  L  P  P  H  L  L  R  Q  H  P  C  L  L  R  Q  H  R  R  S  R  P  S  S  S  V  A  C  C  R  L  G  S  T  E  H  H  K  S  Q  F  H  *  F  S  G  N  I  R  G  T  S  S  *  S  R  C  I  H  Q  I  P  F  S  T  C  S  C  F  Q  F  F  I  A  T  P  *  T  S  Y  R  S  G  K  *  I  G  F  N  I  E  K  S  C  C  D  S  *  F  S  H  F  M  G  C  S  R  C  T  K  N  T  Q  C  R  V  L  L  F  T  H  C  F  C  F  S  C  V  F  L  Y  L  G  C  C  *  T  T  C  T  S  *  S  *  S  C  T  *  T  T  S  V  S  R  W  L  *  F  S  *  T  R  R  I  C  *  E  A  N  S  C  K  S  S  W  R  W  K  Y  F  Q  Y  I  S  S  Y  R  R  I  V  Y  *  S  N  G  *  N  D  G  S  F  R  F  *  A  L  G  S  W  S  I  Q  S  C  K  S  G  I  *  E  K  G  K  P  P  L  F  T  *  V  A  *  *  T  T  S  *  L  G  D  F  R  F  L  W  I  N  D  F  V  I  R  R  *  N  Q  R  A  S  Y  W  A  G  S  K  S  T  E  I  Y  L  G  S  E  G  R  R  *  R  R  Y  I  L  R  *  S  S  K  M  S  I  A  *  R  I  *  E  E  G  I  G  K  R  T  C  N  E  R  L  G  T  T  I  G  N  F  R  S  P  V  Y  G  W  I  H  E  S  L  R  V  E  F  L  Y  G  E  Y  Y  N  G  S  S  N  R  G  M  A  N  A  F  *  S  A  *  K  C  V  V  H  N  *  R  T  E  N  G  D  M  G  E  K  M  G  A  T  K  R  S  D  P  S  R  D  C  *  E  S  C  T  N  V  N  R  L  S  G  G  S  G  D  E  T  K  C  Y  S  D  Q  G  S  S  E  I  I  G  N  G  G  W  G  N  A  A  G  N  E  I  F  C  C  P  H  Y  *  I  D  F  F  S  R  L  I  L  V  M  F  V  L  V  Y  A  H  F  N  L  *  S  C  V  E  I  N  I  L  N  N  S  I  N  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46000" stop="47424"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1422</number_coding_nucleotides>
                  <number_encoded_amino_acids>474</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILTCLPKMAAATTNHVEQQHDVVVVVVPLPAQGHLHAAIELSHRISSANIPVYYVSTAAHVRQAQSRAVGWDPLNTTNLNFIDFPVTFEVPPPNPDASIKFPSQLVPAFNSSLQLREPVTDLVNKLASTSRRVVVIHDFLTSWVVQDVPKIPNAECYCLHTVSAFLVFSYIWDAARPPVPPEAEAVLKQLPSLDGCNSPELEEFAKKQIAARVPGVGNIFSTSRVIEGLYIDLMDRMMGASGFKHWALGPFNPVNLEFEKKENRHYSLEWLDKQPASSVIFVSFGSTTSLSEDEIRELAIGLEASQQRFIWVLRDADKGDIFSGEVRKCQLPEGYEKRVSERGLVMRDWAPQLEILGHPSTGGFMSHCGWNSCMESITMGVPIAAWPMHSDQPRNALFITEGLKTGIWVRKWEQRNEVIPAETVEKVVRTLIASPEGAEMKRNATAIKEAVKLSVMEGGVTQQEMKSFVAHITR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="47566" PGL_stop="46783"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47566" e_stop="46783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="47566" e_stop="46783" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47566" stop="46783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611455" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAATCACTCGAGTTTAAAAAGGGCAAGCATACTCGATAGATTGATAGAGTTATTCAAAATATTTATTTCGACACAGGATCAAAGGTTAAAGTGCGCATAAACTAGCACGAACATCACCAATATTAAACGGGAAAAAAAATCTATCTAGTAATGTGGGCAACAAAAGATTTCATTTCCTGCTGCGTTACCCCACCCTCCATTACCGATAATTTCACTGCTTCCTTGATCGCTGTAGCATTTCGTTTCATCTCCGCTCCCTCCGGAGAGGCGATTAACGTTCGTACAACTTTCTCAACAGTCTCTGCTGGGATCACTTCGTTTCGTTGCTCCCATTTTCTCACCCATATCCCCGTTTTCAGTCCTTCAGTTATGAACAACGCATTTCTAGGCTGATCAGAATGCATTGGCCATGCCGCGATTGGAACTCCCATTGTAATACTCTCCATACAAGAATTCCACCCGCAATGACTCATGAATCCACCCGTAGACGGGTGACCTAAAATTTCCAATTGTGGTGCCCAATCTCTCATTACAAGTCCTCTTTCCGATACCCTCTTCTCATATCCTTCAGGCAATTGACATTTTCGAACTTCACCGGAGAATATATCTCCTTTATCTGCGTCCCTCAGAACCCAGATAAATCTCTGTTGACTTGCTTCCAGCCCAATAGCTAGCTCTCTGATTTCATCTTCGGATAACGAAGTCGTTGATCCAAAGGAAACGAAAATCACCGAGCTAGCTGGTTGTTTATCAAGCCACTCAAGTGAATAATGGCGGTTTTC</gDNA_template>
            <first_frame> S  N  H  S  S  L  K  R  A  S  I  L  D  R  L  I  E  L  F  K  I  F  I  S  T  Q  D  Q  R  L  K  C  A  *  T  S  T  N  I  T  N  I  K  R  E  K  K  S  I  *  *  C  G  Q  Q  K  I  S  F  P  A  A  L  P  H  P  P  L  P  I  I  S  L  L  P  *  S  L  *  H  F  V  S  S  P  L  P  P  E  R  R  L  T  F  V  Q  L  S  Q  Q  S  L  L  G  S  L  R  F  V  A  P  I  F  S  P  I  S  P  F  S  V  L  Q  L  *  T  T  H  F  *  A  D  Q  N  A  L  A  M  P  R  L  E  L  P  L  *  Y  S  P  Y  K  N  S  T  R  N  D  S  *  I  H  P  *  T  G  D  L  K  F  P  I  V  V  P  N  L  S  L  Q  V  L  F  P  I  P  S  S  H  I  L  Q  A  I  D  I  F  E  L  H  R  R  I  Y  L  L  Y  L  R  P  S  E  P  R  *  I  S  V  D  L  L  P  A  Q  *  L  A  L  *  F  H  L  R  I  T  K  S  L  I  Q  R  K  R  K  S  P  S  *  L  V  V  Y  Q  A  T  Q  V  N  N  G  G  F  </first_frame>
            <second_frame>  A  I  T  R  V  *  K  G  Q  A  Y  S  I  D  *  *  S  Y  S  K  Y  L  F  R  H  R  I  K  G  *  S  A  H  K  L  A  R  T  S  P  I  L  N  G  K  K  N  L  S  S  N  V  G  N  K  R  F  H  F  L  L  R  Y  P  T  L  H  Y  R  *  F  H  C  F  L  D  R  C  S  I  S  F  H  L  R  S  L  R  R  G  D  *  R  S  Y  N  F  L  N  S  L  C  W  D  H  F  V  S  L  L  P  F  S  H  P  Y  P  R  F  Q  S  F  S  Y  E  Q  R  I  S  R  L  I  R  M  H  W  P  C  R  D  W  N  S  H  C  N  T  L  H  T  R  I  P  P  A  M  T  H  E  S  T  R  R  R  V  T  *  N  F  Q  L  W  C  P  I  S  H  Y  K  S  S  F  R  Y  P  L  L  I  S  F  R  Q  L  T  F  S  N  F  T  G  E  Y  I  S  F  I  C  V  P  Q  N  P  D  K  S  L  L  T  C  F  Q  P  N  S  *  L  S  D  F  I  F  G  *  R  S  R  *  S  K  G  N  E  N  H  R  A  S  W  L  F  I  K  P  L  K  *  I  M  A  V  F </second_frame>
            <third_frame>   Q  S  L  E  F  K  K  G  K  H  T  R  *  I  D  R  V  I  Q  N  I  Y  F  D  T  G  S  K  V  K  V  R  I  N  *  H  E  H  H  Q  Y  *  T  G  K  K  I  Y  L  V  M  W  A  T  K  D  F  I  S  C  C  V  T  P  P  S  I  T  D  N  F  T  A  S  L  I  A  V  A  F  R  F  I  S  A  P  S  G  E  A  I  N  V  R  T  T  F  S  T  V  S  A  G  I  T  S  F  R  C  S  H  F  L  T  H  I  P  V  F  S  P  S  V  M  N  N  A  F  L  G  *  S  E  C  I  G  H  A  A  I  G  T  P  I  V  I  L  S  I  Q  E  F  H  P  Q  *  L  M  N  P  P  V  D  G  *  P  K  I  S  N  C  G  A  Q  S  L  I  T  S  P  L  S  D  T  L  F  S  Y  P  S  G  N  *  H  F  R  T  S  P  E  N  I  S  P  L  S  A  S  L  R  T  Q  I  N  L  C  *  L  A  S  S  P  I  A  S  S  L  I  S  S  S  D  N  E  V  V  D  P  K  E  T  K  I  T  E  L  A  G  C  L  S  S  H  S  S  E  *  W  R  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47438" stop="47172"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGKKIYLVMWATKDFISCCVTPPSITDNFTASLIAVAFRFISAPSGEAINVRTTFSTVSAGITSFRCSHFLTHIPVFSPSVMNNAFLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47289" stop="47065"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSYNFLNSLCWDHFVSLLPFSHPYPRFQSFSYEQRISRLIRMHWPCRDWNSHCNTLHTRIPPAMTHESTRRRVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="50505" PGL_stop="51878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50505" e_stop="51878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="50505" e_stop="51878" e_length="1374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50505" stop="50880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50505" stop="50827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50557" stop="51096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50560" stop="51156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50571" stop="51236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50581" stop="51141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50631" stop="51185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50698" stop="51317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50861" stop="51430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50861" stop="51295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50866" stop="51650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51156" stop="51878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51156" stop="51819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51156" stop="51777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333148" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTTTGCCCAAACATTTCTTACTCATCCCTCCCAAAAAATGGCATCAACAACAAACCATGTAAATCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACTTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATATCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTCTAGGACACCCGTCTACGGGTGGGTTCATGAGTCATTGTGGGTGGAATTCTTGTATAGAGAGTATTTCAATGGGAGTGCCAATAGCGGCCTGGCCAATGCATTCTGATCAACCTAGAAATGCTTTGTTCATAACTGAAGGACTGAAAATTGGTATATCAGTGAGAGAATGGGAGCGAAGAAAGGAAGTGGTGCCTGCAGAAACTGTTGAAAAAGTTGTGAGAACGTTAATGGCGTCTCCGGAGGGAGAGGAGATGAAACGGAAAGCTATGGAGCTCAAGGAAGCAGTGAAGTTGGCAG</gDNA_template>
            <first_frame> K  I  L  P  K  H  F  L  L  I  P  P  K  K  W  H  Q  Q  Q  T  M  *  I  N  N  T  T  L  L  *  L  *  F  L  F  L  H  K  A  I  S  T  Q  P  S  N  S  P  A  A  S  P  P  P  T  S  P  F  T  T  S  A  P  P  L  T  S  G  K  L  T  P  V  L  P  D  G  T  H  *  T  P  Q  I  S  I  S  L  I  F  L  L  H  S  M  P  L  L  R  T  Q  M  H  P  S  S  S  L  H  N  *  S  L  L  S  T  L  Q  C  N  Y  V  P  Q  L  Q  I  *  *  I  N  W  V  Q  Y  R  G  E  *  *  L  F  M  I  F  S  R  L  G  W  F  K  M  Y  P  K  Y  P  I  Q  S  V  T  V  Y  T  L  F  L  L  I  L  C  L  H  I  L  G  R  L  L  D  H  L  Y  L  L  K  L  K  L  Y  S  N  N  F  R  L  K  M  G  V  L  L  L  K  S  L  N  L  L  *  S  K  *  M  Y  F  R  M  L  E  I  F  T  V  R  L  E  Q  S  M  E  C  T  L  I  *  Q  R  K  *  V  F  L  R  I  L  R  T  G  L  L  V  H  S  I  L  *  I  *  I  L  I  R  R  I  V  I  I  Q  L  S  G  *  I  N  N  Q  L  A  R  *  F  S  C  P  L  D  Q  R  L  R  *  P  R  M  K  S  E  S  *  L  L  G  W  K  Q  V  N  R  D  L  S  G  S  *  G  T  Q  I  K  E  I  Y  S  P  V  K  F  E  N  I  N  C  L  K  D  M  R  R  G  Y  R  K  E  D  L  *  *  E  I  G  H  H  N  W  K  F  *  D  T  R  L  R  V  G  S  *  V  I  V  G  G  I  L  V  *  R  V  F  Q  W  E  C  Q  *  R  P  G  Q  C  I  L  I  N  L  E  M  L  C  S  *  L  K  D  *  K  L  V  Y  Q  *  E  N  G  S  E  E  R  K  W  C  L  Q  K  L  L  K  K  L  *  E  R  *  W  R  L  R  R  E  R  R  *  N  G  K  L  W  S  S  R  K  Q  *  S  W  Q </first_frame>
            <second_frame>  K  F  C  P  N  I  S  Y  S  S  L  P  K  N  G  I  N  N  K  P  C  K  S  T  T  R  R  C  C  S  Y  S  S  S  S  C  T  R  P  S  P  R  S  P  R  T  L  P  P  P  L  L  R  Q  H  P  R  L  L  R  Q  H  H  R  S  R  P  A  S  S  L  P  C  C  R  M  G  P  I  K  H  P  K  S  Q  F  H  *  F  S  C  Y  I  Q  C  P  S  Y  E  P  R  C  I  H  Q  V  P  F  T  T  S  P  C  F  Q  L  F  N  A  T  T  Y  P  N  Y  R  S  S  K  *  I  G  F  N  I  E  E  S  D  S  Y  S  *  F  S  H  V  L  G  G  S  R  C  T  Q  N  I  Q  Y  R  V  L  L  F  T  H  C  F  C  L  S  Y  V  Y  I  Y  L  G  G  C  *  T  T  C  T  S  *  S  *  S  C  T  Q  T  T  S  V  S  R  W  V  Y  F  S  *  S  H  *  I  C  Y  E  A  N  K  C  T  S  G  C  W  K  Y  L  Q  Y  V  S  S  N  R  W  N  V  P  *  F  D  R  E  N  E  C  S  *  G  F  *  E  L  G  S  W  S  I  Q  S  C  R  S  E  Y  *  *  E  G  S  S  L  F  S  *  V  V  R  *  T  T  S  *  L  G  D  F  R  V  L  W  I  N  D  F  V  N  R  G  *  N  Q  R  A  S  Y  W  A  G  S  K  S  T  E  I  Y  L  G  P  E  G  R  R  *  R  R  Y  I  L  R  *  S  S  K  I  S  I  A  *  R  I  *  E  E  G  I  G  K  R  T  C  N  E  R  L  G  T  T  I  G  N  S  R  T  P  V  Y  G  W  V  H  E  S  L  W  V  E  F  L  Y  R  E  Y  F  N  G  S  A  N  S  G  L  A  N  A  F  *  S  T  *  K  C  F  V  H  N  *  R  T  E  N  W  Y  I  S  E  R  M  G  A  K  K  G  S  G  A  C  R  N  C  *  K  S  C  E  N  V  N  G  V  S  G  G  R  G  D  E  T  E  S  Y  G  A  Q  G  S  S  E  V  G   </second_frame>
            <third_frame>   N  F  A  Q  T  F  L  T  H  P  S  Q  K  M  A  S  T  T  N  H  V  N  Q  Q  H  D  V  V  V  V  I  V  P  L  P  A  Q  G  H  L  H  A  A  L  E  L  S  R  R  L  S  S  A  N  I  P  V  Y  Y  V  S  T  T  A  H  V  R  Q  A  H  S  R  A  A  G  W  D  P  L  N  T  P  N  L  N  F  I  D  F  P  V  T  F  N  A  P  P  T  N  P  D  A  S  I  K  F  P  S  Q  L  V  P  A  F  N  S  S  M  Q  L  R  T  P  I  T  D  L  V  N  K  L  G  S  I  S  R  R  V  I  V  I  H  D  F  L  T  S  W  V  V  Q  D  V  P  K  I  S  N  T  E  C  Y  C  L  H  T  V  S  A  Y  L  M  F  T  Y  T  W  E  A  A  R  P  P  V  P  P  E  A  E  V  V  L  K  Q  L  P  S  Q  D  G  C  T  S  P  E  V  I  E  F  A  M  K  Q  I  N  V  L  Q  D  A  G  N  I  Y  S  T  S  R  A  I  D  G  M  Y  L  D  L  T  E  K  M  S  V  P  K  D  F  K  N  W  A  L  G  P  F  N  P  V  D  L  N  I  D  K  K  D  R  H  Y  S  V  E  W  L  D  K  Q  P  A  S  S  V  I  F  V  S  F  G  S  T  T  S  L  T  E  D  E  I  R  E  L  A  I  G  L  E  A  S  Q  Q  R  F  I  W  V  L  R  D  A  D  K  G  D  I  F  S  G  E  V  R  K  Y  Q  L  P  E  G  Y  E  K  R  V  S  E  R  G  L  V  M  R  D  W  A  P  Q  L  E  I  L  G  H  P  S  T  G  G  F  M  S  H  C  G  W  N  S  C  I  E  S  I  S  M  G  V  P  I  A  A  W  P  M  H  S  D  Q  P  R  N  A  L  F  I  T  E  G  L  K  I  G  I  S  V  R  E  W  E  R  R  K  E  V  V  P  A  E  T  V  E  K  V  V  R  T  L  M  A  S  P  E  G  E  E  M  K  R  K  A  M  E  L  K  E  A  V  K  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50507" stop="51877"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1371</number_coding_nucleotides>
                  <number_encoded_amino_acids>457</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFAQTFLTHPSQKMASTTNHVNQQHDVVVVIVPLPAQGHLHAALELSRRLSSANIPVYYVSTTAHVRQAHSRAAGWDPLNTPNLNFIDFPVTFNAPPTNPDASIKFPSQLVPAFNSSMQLRTPITDLVNKLGSISRRVIVIHDFLTSWVVQDVPKISNTECYCLHTVSAYLMFTYTWEAARPPVPPEAEVVLKQLPSQDGCTSPEVIEFAMKQINVLQDAGNIYSTSRAIDGMYLDLTEKMSVPKDFKNWALGPFNPVDLNIDKKDRHYSVEWLDKQPASSVIFVSFGSTTSLTEDEIRELAIGLEASQQRFIWVLRDADKGDIFSGEVRKYQLPEGYEKRVSERGLVMRDWAPQLEILGHPSTGGFMSHCGWNSCIESISMGVPIAAWPMHSDQPRNALFITEGLKIGISVREWERRKEVVPAETVEKVVRTLMASPEGEEMKRKAMELKEAVKLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="51912" PGL_stop="51192"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51912" e_stop="51192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="51912" e_stop="51192" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51912" stop="51387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51496" stop="51192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51494" stop="51192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350507" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATTTCCTTGTGAGTTACTCCACCCTCCATCACTGCCAACTTCACTGCTTCCTTGAGCTCCATAGCTTTCCGTTTCATCTCCTCTCCCTCCGGAGACGCCATTAACGTTCTCACAACTTTTTCAACAGTTTCTGCAGGCACCACTTCCTTTCTTCGCTCCCATTCTCTCACTGATATACCAATTTTCAGTCCTTCAGTTATGAACAAAGCATTTCTAGGTTGATCAGAATGCATTGGCCAGGCCGCTATTGGCACTCCCATTGAAATACTCTCTATACAAGAATTCCACCCACAATGACTCATGAACCCACCCGTAGACGGGTGTCCTAGAATTTCCAATTGTGGTGCCCAATCTCTCATTACAAGTCCTCTTTCCGATACCCTCTTCTCATATCCTTCAGGCAATTGATATTTTCGAACTTCACCGGAGAATATATCTCCTTTATCTGCGTCCCTCAGGACCCAGATAAATCTCTGTTGACTTGCTTCCAGCCCAATAGCTAGCTCTCTGATTTCATCCTCGGTTAACGAAGTCGTTGATCCAAAGGACACGAAAATCACCGAGCTAGCTGGTTGTTTATCTAACCACTCAACTGAATAATGACGATCCTTCTTATCAATATTCAGATCTACAGGATTGAATGGACCAAGAGCCCAGTTCTTAAAATCCTTAGGAACACTCATTTTCTCTGTCAAATCAAGGTACATTCCATCGATTG</gDNA_template>
            <first_frame> S  I  S  L  *  V  T  P  P  S  I  T  A  N  F  T  A  S  L  S  S  I  A  F  R  F  I  S  S  P  S  G  D  A  I  N  V  L  T  T  F  S  T  V  S  A  G  T  T  S  F  L  R  S  H  S  L  T  D  I  P  I  F  S  P  S  V  M  N  K  A  F  L  G  *  S  E  C  I  G  Q  A  A  I  G  T  P  I  E  I  L  S  I  Q  E  F  H  P  Q  *  L  M  N  P  P  V  D  G  C  P  R  I  S  N  C  G  A  Q  S  L  I  T  S  P  L  S  D  T  L  F  S  Y  P  S  G  N  *  Y  F  R  T  S  P  E  N  I  S  P  L  S  A  S  L  R  T  Q  I  N  L  C  *  L  A  S  S  P  I  A  S  S  L  I  S  S  S  V  N  E  V  V  D  P  K  D  T  K  I  T  E  L  A  G  C  L  S  N  H  S  T  E  *  *  R  S  F  L  S  I  F  R  S  T  G  L  N  G  P  R  A  Q  F  L  K  S  L  G  T  L  I  F  S  V  K  S  R  Y  I  P  S  I  </first_frame>
            <second_frame>  P  F  P  C  E  L  L  H  P  P  S  L  P  T  S  L  L  P  *  A  P  *  L  S  V  S  S  P  L  P  P  E  T  P  L  T  F  S  Q  L  F  Q  Q  F  L  Q  A  P  L  P  F  F  A  P  I  L  S  L  I  Y  Q  F  S  V  L  Q  L  *  T  K  H  F  *  V  D  Q  N  A  L  A  R  P  L  L  A  L  P  L  K  Y  S  L  Y  K  N  S  T  H  N  D  S  *  T  H  P  *  T  G  V  L  E  F  P  I  V  V  P  N  L  S  L  Q  V  L  F  P  I  P  S  S  H  I  L  Q  A  I  D  I  F  E  L  H  R  R  I  Y  L  L  Y  L  R  P  S  G  P  R  *  I  S  V  D  L  L  P  A  Q  *  L  A  L  *  F  H  P  R  L  T  K  S  L  I  Q  R  T  R  K  S  P  S  *  L  V  V  Y  L  T  T  Q  L  N  N  D  D  P  S  Y  Q  Y  S  D  L  Q  D  *  M  D  Q  E  P  S  S  *  N  P  *  E  H  S  F  S  L  S  N  Q  G  T  F  H  R  L </second_frame>
            <third_frame>   H  F  L  V  S  Y  S  T  L  H  H  C  Q  L  H  C  F  L  E  L  H  S  F  P  F  H  L  L  S  L  R  R  R  H  *  R  S  H  N  F  F  N  S  F  C  R  H  H  F  L  S  S  L  P  F  S  H  *  Y  T  N  F  Q  S  F  S  Y  E  Q  S  I  S  R  L  I  R  M  H  W  P  G  R  Y  W  H  S  H  *  N  T  L  Y  T  R  I  P  P  T  M  T  H  E  P  T  R  R  R  V  S  *  N  F  Q  L  W  C  P  I  S  H  Y  K  S  S  F  R  Y  P  L  L  I  S  F  R  Q  L  I  F  S  N  F  T  G  E  Y  I  S  F  I  C  V  P  Q  D  P  D  K  S  L  L  T  C  F  Q  P  N  S  *  L  S  D  F  I  L  G  *  R  S  R  *  S  K  G  H  E  N  H  R  A  S  W  L  F  I  *  P  L  N  *  I  M  T  I  L  L  I  N  I  Q  I  Y  R  I  E  W  T  K  S  P  V  L  K  I  L  R  N  T  H  F  L  C  Q  I  K  V  H  S  I  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51897" stop="51688"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTPPSITANFTASLSSIAFRFISSPSGDAINVLTTFSTVSAGTTSFLRSHSLTDIPIFSPSVMNKAFLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="68135" PGL_stop="65084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68135" e_stop="67889"/>
            <exon e_start="66905" e_stop="66775"/>
            <exon e_start="65869" e_stop="65636"/>
            <exon e_start="65326" e_stop="65084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.943"/>
          <exon-intron don_prob="0.422" acc_prob="0.994" e_score="0.969"/>
          <exon-intron don_prob="0.969" acc_prob="1.000" e_score="0.966"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="68135" e_stop="67889" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67888" i_stop="66906" i_length="983"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="66905" e_stop="66775" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.422" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66774" i_stop="65870" i_length="905"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="65869" e_stop="65636" e_length="234"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65635" i_stop="65327" i_length="309"/>
          </intron>
          <exon e_serial="4" e_score="0.948">
            <gDNA_exon_boundary e_start="65326" e_stop="65084" e_length="243"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68135" stop="67889"/>
              <exon start="66905" stop="66775"/>
              <exon start="65869" stop="65636"/>
              <exon start="65326" stop="65217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68135" stop="67889"/>
              <exon start="66905" stop="66775"/>
              <exon start="65869" stop="65636"/>
              <exon start="65326" stop="65253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68135" stop="67889"/>
              <exon start="66905" stop="66775"/>
              <exon start="65869" stop="65696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68051" stop="67889"/>
              <exon start="66905" stop="66775"/>
              <exon start="65869" stop="65636"/>
              <exon start="65326" stop="65104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68045" stop="67889"/>
              <exon start="66905" stop="66775"/>
              <exon start="65869" stop="65636"/>
              <exon start="65326" stop="65097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68032" stop="67889"/>
              <exon start="66905" stop="66775"/>
              <exon start="65869" stop="65636"/>
              <exon start="65326" stop="65084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGGAATTTCAAGTTTTTTGAGGATTTGGTTATTTGTATTAACTTTGGATATTTTGATTAATATTGTAAATGGACAGCCTTTAGTTCCAGCATTATTTATTTTTGGAGATTCAGTTGTTGATGCAGGAAATAATAATTATCTTAAAACAATTATCAAGGCAAATTTTCCTCCTTATGGAAGAGATTTTCCTAAAAAGATACCAACTGGAAGATTTTGCAATGGAAAACTTGCGTCAGACTTCACGG : CTGAGAATCTTGGGTTTACTTCATATCCACCAGCTTATCTCAGCAAGAAAGCCAAAGGGAAAAATCTTTTGATTGGAGCCAATTTTGCCTCTGGATCATCTGGTTACTATGACACTACTGCTAGGCTATAT : GATGCAATTCCTTTGAGCAAACAACTTGAATATTACAAAGAATATCAAAAGAAATTGGTGGTAATTGCAGGGAAATTAAATGCTTCATCAATAACCAATGCTTCAATTCACTTAATCAGTGCTGGAAGTAGTGATTTTGTTCAGAATTATTATATTAATCCTTTGCTCTACAAAGTTTATACTCCAGATCAATTCTCAGATATCCTCATCAAGTCATACACTAAATTTATATTG : GAATTGTATGGATTAGGAGCAAGAAAGATTGGAGTGACAACAGTACCACCAATTGGATGTTTACCAGCATCAATTACAATATTTGGCAAAGACAACAATAGTTGTGTCAAGAAGATGAACAAAGTGGCAATTTCATTCAACAATAAGCTCAATGACACTTCTATCAAATTGCAAAAAAAGCTTTTTGGTCTCAATCTTGTTATCTTGGATATATACCAACCCCTCCTTGACCTTGTCACACAT</gDNA_template>
            <first_frame> M  G  I  S  S  F  L  R  I  W  L  F  V  L  T  L  D  I  L  I  N  I  V  N  G  Q  P  L  V  P  A  L  F  I  F  G  D  S  V  V  D  A  G  N  N  N  Y  L  K  T  I  I  K  A  N  F  P  P  Y  G  R  D  F  P  K  K  I  P  T  G  R  F  C  N  G  K  L  A  S  D  F  T   : A  E  N  L  G  F  T  S  Y  P  P  A  Y  L  S  K  K  A  K  G  K  N  L  L  I  G  A  N  F  A  S  G  S  S  G  Y  Y  D  T  T  A  R  L  Y  :  D  A  I  P  L  S  K  Q  L  E  Y  Y  K  E  Y  Q  K  K  L  V  V  I  A  G  K  L  N  A  S  S  I  T  N  A  S  I  H  L  I  S  A  G  S  S  D  F  V  Q  N  Y  Y  I  N  P  L  L  Y  K  V  Y  T  P  D  Q  F  S  D  I  L  I  K  S  Y  T  K  F  I  L  :  E  L  Y  G  L  G  A  R  K  I  G  V  T  T  V  P  P  I  G  C  L  P  A  S  I  T  I  F  G  K  D  N  N  S  C  V  K  K  M  N  K  V  A  I  S  F  N  N  K  L  N  D  T  S  I  K  L  Q  K  K  L  F  G  L  N  L  V  I  L  D  I  Y  Q  P  L  L  D  L  V  T  H </first_frame>
            <second_frame>  W  E  F  Q  V  F  *  G  F  G  Y  L  Y  *  L  W  I  F  *  L  I  L  *  M  D  S  L  *  F  Q  H  Y  L  F  L  E  I  Q  L  L  M  Q  E  I  I  I  I  L  K  Q  L  S  R  Q  I  F  L  L  M  E  E  I  F  L  K  R  Y  Q  L  E  D  F  A  M  E  N  L  R  Q  T  S  R  :  L  R  I  L  G  L  L  H  I  H  Q  L  I  S  A  R  K  P  K  G  K  I  F  *  L  E  P  I  L  P  L  D  H  L  V  T  M  T  L  L  L  G  Y  M :   M  Q  F  L  *  A  N  N  L  N  I  T  K  N  I  K  R  N  W  W  *  L  Q  G  N  *  M  L  H  Q  *  P  M  L  Q  F  T  *  S  V  L  E  V  V  I  L  F  R  I  I  I  L  I  L  C  S  T  K  F  I  L  Q  I  N  S  Q  I  S  S  S  S  H  T  L  N  L  Y  W :   N  C  M  D  *  E  Q  E  R  L  E  *  Q  Q  Y  H  Q  L  D  V  Y  Q  H  Q  L  Q  Y  L  A  K  T  T  I  V  V  S  R  R  *  T  K  W  Q  F  H  S  T  I  S  S  M  T  L  L  S  N  C  K  K  S  F  L  V  S  I  L  L  S  W  I  Y  T  N  P  S  L  T  L  S  H   </second_frame>
            <third_frame>   G  N  F  K  F  F  E  D  L  V  I  C  I  N  F  G  Y  F  D  *  Y  C  K  W  T  A  F  S  S  S  I  I  Y  F  W  R  F  S  C  *  C  R  K  *  *  L  S  *  N  N  Y  Q  G  K  F  S  S  L  W  K  R  F  S  *  K  D  T  N  W  K  I  L  Q  W  K  T  C  V  R  L  H  G :   *  E  S  W  V  Y  F  I  S  T  S  L  S  Q  Q  E  S  Q  R  E  K  S  F  D  W  S  Q  F  C  L  W  I  I  W  L  L  *  H  Y  C  *  A  I   : *  C  N  S  F  E  Q  T  T  *  I  L  Q  R  I  S  K  E  I  G  G  N  C  R  E  I  K  C  F  I  N  N  Q  C  F  N  S  L  N  Q  C  W  K  *  *  F  C  S  E  L  L  Y  *  S  F  A  L  Q  S  L  Y  S  R  S  I  L  R  Y  P  H  Q  V  I  H  *  I  Y  I   : G  I  V  W  I  R  S  K  K  D  W  S  D  N  S  T  T  N  W  M  F  T  S  I  N  Y  N  I  W  Q  R  Q  Q  *  L  C  Q  E  D  E  Q  S  G  N  F  I  Q  Q  *  A  Q  *  H  F  Y  Q  I  A  K  K  A  F  W  S  Q  S  C  Y  L  G  Y  I  P  T  P  P  *  P  C  H  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68135" stop="67889"/>
                    <exon start="66905" stop="66775"/>
                    <exon start="65869" stop="65636"/>
                    <exon start="65326" stop="65084"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGISSFLRIWLFVLTLDILINIVNGQPLVPALFIFGDSVVDAGNNNYLKTIIKANFPPYGRDFPKKIPTGRFCNGKLASDFTAENLGFTSYPPAYLSKKAKGKNLLIGANFASGSSGYYDTTARLYDAIPLSKQLEYYKEYQKKLVVIAGKLNASSITNASIHLISAGSSDFVQNYYINPLLYKVYTPDQFSDILIKSYTKFILELYGLGARKIGVTTVPPIGCLPASITIFGKDNNSCVKKMNKVAISFNNKLNDTSIKLQKKLFGLNLVILDIYQPLLDLVTH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="71791" PGL_stop="71351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71791" e_stop="71351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="71791" e_stop="71351" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71791" stop="71351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCATACGTCTACAAGTTGTCATCTTCGGATAGATGCAAGAGCATTCCTCTTCAAATCGACAGCTCTGCGTATGGAAGTGACAACGGGTGTTTGAAGGGTGGAGTACACTTTGTTGATGGCGACGAGAGTGTACCGGTCGTGAGCGCCGGCTTCATGTGCGCGAAAGGTTGGCGAGGCAAAACGCGTTTCAACCCCTCGGGCATCTCAACATACATAAGGGAACACCAGCACAAGGCTCCGTCGAGTCTGCTAGAAGGGAGAGGCACGGAGAGTGGTGCTCATGTTGACATCATGGGAAATGTCGCCTTCATCGAGGATGTCCTTCGACTCGCTGGTGGTGCCACCGGTGCAGAGTTGGGTGGCGATAGAATCTACTCGGATATTATGAAAATGTCAGAGAGGATAAATATTCGTCTTTAACGTGTGATAATACGCGCGA</gDNA_template>
            <first_frame> D  H  T  S  T  S  C  H  L  R  I  D  A  R  A  F  L  F  K  S  T  A  L  R  M  E  V  T  T  G  V  *  R  V  E  Y  T  L  L  M  A  T  R  V  Y  R  S  *  A  P  A  S  C  A  R  K  V  G  E  A  K  R  V  S  T  P  R  A  S  Q  H  T  *  G  N  T  S  T  R  L  R  R  V  C  *  K  G  E  A  R  R  V  V  L  M  L  T  S  W  E  M  S  P  S  S  R  M  S  F  D  S  L  V  V  P  P  V  Q  S  W  V  A  I  E  S  T  R  I  L  *  K  C  Q  R  G  *  I  F  V  F  N  V  *  *  Y  A  R </first_frame>
            <second_frame>  I  I  R  L  Q  V  V  I  F  G  *  M  Q  E  H  S  S  S  N  R  Q  L  C  V  W  K  *  Q  R  V  F  E  G  W  S  T  L  C  *  W  R  R  E  C  T  G  R  E  R  R  L  H  V  R  E  R  L  A  R  Q  N  A  F  Q  P  L  G  H  L  N  I  H  K  G  T  P  A  Q  G  S  V  E  S  A  R  R  E  R  H  G  E  W  C  S  C  *  H  H  G  K  C  R  L  H  R  G  C  P  S  T  R  W  W  C  H  R  C  R  V  G  W  R  *  N  L  L  G  Y  Y  E  N  V  R  E  D  K  Y  S  S  L  T  C  D  N  T  R   </second_frame>
            <third_frame>   S  Y  V  Y  K  L  S  S  S  D  R  C  K  S  I  P  L  Q  I  D  S  S  A  Y  G  S  D  N  G  C  L  K  G  G  V  H  F  V  D  G  D  E  S  V  P  V  V  S  A  G  F  M  C  A  K  G  W  R  G  K  T  R  F  N  P  S  G  I  S  T  Y  I  R  E  H  Q  H  K  A  P  S  S  L  L  E  G  R  G  T  E  S  G  A  H  V  D  I  M  G  N  V  A  F  I  E  D  V  L  R  L  A  G  G  A  T  G  A  E  L  G  G  D  R  I  Y  S  D  I  M  K  M  S  E  R  I  N  I  R  L  *  R  V  I  I  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71789" stop="71370"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYVYKLSSSDRCKSIPLQIDSSAYGSDNGCLKGGVHFVDGDESVPVVSAGFMCAKGWRGKTRFNPSGISTYIREHQHKAPSSLLEGRGTESGAHVDIMGNVAFIEDVLRLAGGATGAELGGDRIYSDIMKMSERINIRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="107559" PGL_stop="95225"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106861" e_stop="106577"/>
            <exon e_start="106461" e_stop="106141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.951"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="106861" e_stop="106577" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106576" i_stop="106462" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="106461" e_stop="106141" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106861" stop="106577"/>
              <exon start="106461" stop="106231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106375" stop="106141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATTGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCATGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAG : GATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGAAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCTCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAGCTATAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCCTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  G  L  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  :  D  S  I  L  R  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  I  *  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  A  I  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  L  F  V </first_frame>
            <second_frame>  L  I  Y  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  D  W  V  S  R  S  D  T  R  I  E  Y  G  S  G  V  M  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  I  W  I  G  C  H  V  L  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R :   I  V  Y  *  G  A  E  C  H  V  P  T  R  G  K  *  R  *  *  I  L  K  Y  D  N  I  S  N  L  M  N  *  I  L  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  Y  L   </second_frame>
            <third_frame>   *  S  T  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  S  C  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  Y  G  S  G  V  T  F  *  H  Q  D  R  I  W  I  G  C  H  V  P  V  P   : G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  I  I  Y  P  I  *  *  T  K  F  S  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  S  Y  K  C  C  M  L  R  I  L  V  D  F  M  I  L  P  N  T  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0072I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96567" e_stop="96231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="96567" e_stop="96231" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96567" stop="96231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATGTACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTTATTGTCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCCTTAATCTACGTGTCGGTTCGTGACACTCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  C  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  M  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  V  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  F  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  S  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  V  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  C  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  L  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  S  L  V  S  V  R  D  T  P  I  P  L  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  M  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  V  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  Y  C  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  *  S  T  C  R  F  V  T  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0072I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="107559" e_stop="107170"/>
            <exon e_start="95339" e_stop="95225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.928"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="107559" e_stop="107170" e_length="390"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107169" i_stop="95340" i_length="11830"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="95339" e_stop="95225" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107559" stop="107170"/>
              <exon start="95339" stop="95225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGGACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTTGGTGGAAATATTGGGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCATATCCCAGGTAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGTCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGG : GTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCCCATGACGATCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAG</gDNA_template>
            <first_frame> K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  L  *  R  N  G  R  T  D  R  H  R  C  D  G  P  S  Q  T  L  G  G  N  I  G  S  L  N  L  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  H  I  P  G  R  I  G  F  P  Y  T  F  *  G  T  F  W  D  Y  S  F  L  N  Y  R  F  R  G  F  I  L  I  T  Q  I  L  G  G  *  K  R  *  P  *  V  N  *  W  G  I  I  V  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  :  V  L  K  R  D  P  S  T  V  R  R  A  H  D  D  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  </first_frame>
            <second_frame>  K  H  L  E  N  L  K  L  G  T  E  N  R  L  S  E  L  C  D  G  M  A  G  R  T  V  T  G  V  T  D  R  H  R  P  L  V  E  I  L  G  L  *  T  L  R  R  P  A  G  R  T  V  A  G  T  T  A  R  H  R  L  R  I  S  Q  V  E  S  D  F  L  T  R  F  K  G  R  F  G  T  I  L  S  L  I  I  D  F  V  G  L  Y  *  *  L  K  F  L  G  V  K  R  G  N  P  K  L  I  S  G  V  L  L  S  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G :   F  *  N  E  T  P  R  R  S  V  V  P  M  T  I  R  R  G  F  R  R  L  S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q </second_frame>
            <third_frame>   N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  V  *  R  T  V  T  D  P  W  W  K  Y  W  V  S  E  P  C  D  D  L  Q  D  G  P  S  Q  A  R  R  P  V  T  G  C  A  Y  P  R  *  N  R  I  S  L  H  V  L  R  D  V  L  G  L  F  F  P  *  L  *  I  S  W  V  Y  I  N  N  S  N  S  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E   : G  F  E  T  R  P  L  D  G  P  S  C  P  *  R  S  V  V  G  S  V  V  S  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0072I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="96241" PGL_stop="96719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96241" e_stop="96719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="96241" e_stop="96719" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96241" stop="96478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96242" stop="96719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTAAGGGGATCGGAGTGTCACGTACCGACACAAGAGAATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGACAATAAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGACATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTACATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTTGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAACCGCAAGTCTAGCCAGTCTTCATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  K  G  I  G  V  S  R  T  D  T  R  E  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  K  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  H  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  T  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  C  V  C  T  D  P  L  L  L  C  F  L  L  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  P  Q  V  *  P  V  F  I  I  P  D  I  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  E  P  T  R  R  L  R  G  S  E  C  H  V  P  T  Q  E  N  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  T  I  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  H  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  L  V  F  V  L  T  P  Y  F  Y  V  F  F  F  V  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  R  K  S  S  Q  S  S  L  F  R  I  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  V  D  *  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  Q  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  T  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  L  C  L  Y  *  P  P  T  F  M  F  S  S  L  L  F  V  E  C  S  K  R  A  I  V  F  N  S  T  A  S  L  A  S  L  H  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0072I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="110308" PGL_stop="115657"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110308" e_stop="110720"/>
            <exon e_start="111951" e_stop="112043"/>
            <exon e_start="112181" e_stop="112288"/>
            <exon e_start="113814" e_stop="113928"/>
            <exon e_start="114012" e_stop="114145"/>
            <exon e_start="114243" e_stop="114344"/>
            <exon e_start="114428" e_stop="114520"/>
            <exon e_start="114630" e_stop="114765"/>
            <exon e_start="114852" e_stop="115356"/>
            <exon e_start="115646" e_stop="115653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.482" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110308" e_stop="110720" e_length="413"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111951" e_stop="112043" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.962">
            <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112181" e_stop="112288" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113814" e_stop="113928" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114012" e_stop="114145" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.735" acc_prob="0.904">
            <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114243" e_stop="114344" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.966" acc_prob="0.886">
            <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="114428" e_stop="114520" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="114630" e_stop="114765" e_length="136"/>
          </exon>
          <intron i_serial="8" don_prob="0.482" acc_prob="0.980">
            <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="114852" e_stop="115356" e_length="505"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="115357" i_stop="115645" i_length="289"/>
          </intron>
          <exon e_serial="10" e_score="0.875">
            <gDNA_exon_boundary e_start="115646" e_stop="115653" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110308" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110308" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110372" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110374" stop="110720"/>
              <exon start="111951" stop="112036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110379" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110379" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110380" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110381" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110381" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110381" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110382" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110389" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110389" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110392" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110394" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110396" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110396" stop="110720"/>
              <exon start="111951" stop="112033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110402" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110411" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110412" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110418" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110431" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110433" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110434" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110443" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110445" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110450" stop="110720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110567" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110570" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110630" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110645" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110645" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110689" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111993" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111993" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113891" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114027" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114068" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577760" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114120" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114122" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114453" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114457" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114458" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115356"/>
              <exon start="115646" stop="115653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114475" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114505" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCTCCTCCCTCCTTTTTCTTGCTTTAAATACATTCACCGTCAAAAACCTTTACATACATATCGATTCACTTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG : ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG : GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG : GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG : CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT : AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC : GAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG : GTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG : GTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGGGCTATAAATTTTCCTATTTATTC : GAAAAAAA</gDNA_template>
            <first_frame> A  L  L  P  P  F  S  C  F  K  Y  I  H  R  Q  K  P  L  H  T  Y  R  F  T  S  I  *  R  E  K  L  K  K  V  S  *  K  K  L  Q  *  E  R  I  C  S  N  W  K  W  Q  E  E  *  I  W  T  V  I  P  L  S  R  L  R  Y  A  *  L  V  P  V  D  S  L  V  L  I  Y  V  R  S  F  C  R  R  L  L  I  R  C  L  L  S  M  F  T  V  I  R  L  S  I  C  L  N  R  R  R  L  L  G  L  I  E  F  S  F  I  E  S  I  L  R  M  I  L  A  L  K  V  S  S  K  W  Q  I  * :   P  *  I  L  L  R  S  A  H  L  Q  I  T  T  L  V  H  L  I  Q  F  T  A  I  S  S  M  L  Y  Q  W :   S  S  T  A  Q  K  M  E  S  V  S  F  T  S  Q  L  V  K  F  M  G  K  P  *  V  P  F  Y  R  K  T  A  H  S  G  R :   I  L  L  I  M  C  L  R  K  T  P  P  L  A  S  L  D  Q  L  R  S  S  G  G  P  M  H  V  Q  N  S  *  L  R  G  W  S  M  :  L  R  V  R  R  M  A  *  S  S  L  L  *  G  H  L  T  G  L  V  L  G  W  I  L  F  P  A  L  M  V  L  V  K  V  F  Q  E  C  *  L  A  L  V  I :   T  F  *  D  V  S  L  *  N  L  W  M  G  E  N  L  K  G  P  S  Y  I  S  K  M  L  L  K  L  F  F  *  *  S :   K  I  L  P  E  P  M  A  I  S  L  M  L  V  T  L  T  M  K  L  L  S  G  S  W  L  K  *  *  L  R :   C  M  L  R  *  V  E  S  L  L  L  K  H  P  P  L  M  *  V  L  K  N  F  M  V  R  G  M  M  T  V  T  R  G  F  R  T  *  P  *  S  T  G  S  L  :  V  G  T  Q  R  L  P  Y  G  T  C  *  N  P  H  S  H  T  N  T  G  H  T  L  R  L  S  S  R  P  C  L  K  Q  Q  Q  I  D  C  S  L  L  V  G  R  S  F  N  I  L  L  R  F  S  *  V  K  I  Y  I  V  L  H  L  I  H  V  I  L  R  P  F  C  N  E  S  C  I  L  F  C  D  S  I  F  I  K  K  F  E  N  L  F  N  N  T  M  L  R  I  L  D  G  Q  E  C  R  C  H  R  L  G  V  L  C  H  *  C  F  K  I  V  I  G  V  L  D  K  R  K  A  V  L  F  L  *  D  L  L  S  S  I  Y  L  F  L  C  M  E  T  S  C  I  I  F  I  D  L  L  M  G  L  *  I  F  L  F  I   : R  K  K </first_frame>
            <second_frame>  L  S  S  L  L  F  L  A  L  N  T  F  T  V  K  N  L  Y  I  H  I  D  S  L  Q  Y  R  E  R  N  *  K  K  Y  L  K  K  N  C  S  E  R  G  F  A  V  I  G  N  G  R  K  S  R  S  G  R  *  S  H  *  A  D  Y  D  M  H  D  W  C  R  W  I  H  W  F  S  F  M  *  E  A  S  V  G  D  S  S  *  G  A  C  C  R  C  L  Q  *  *  D  *  A  F  A  *  T  G  D  G  Y  L  G  *  S  N  S  V  S  S  N  Q  Y  *  E  *  F  S  P  *  R  S  H  Q  N  G  R  S   : D  H  K  S  C  C  D  L  H  T  C  R  L  Q  H  S  S  T  *  Y  N  L  Q  Q  F  H  R  C  S  T  S   : G  Q  V  L  L  R  K  W  K  A  S  H  S  L  L  N  L  *  S  L  W  E  N  H  R  C  L  F  T  E  R  Q  P  T  P  A   : G  S  C  L  L  C  A  *  G  R  H  L  P  L  H  L  W  T  N  *  E  A  A  V  V  L  C  M  C  K  T  V  D  *  E  A  G  L  C :   *  G  C  G  E  W  L  R  V  H  Y  C  K  A  I  *  L  D  W  S  *  D  G  F  Y  S  R  H  *  W  S  *  *  R  C  S  K  S  V  S  L  L  *  *   : *  P  F  K  T  *  A  F  E  T  C  G  W  G  R  I  S  K  D  L  H  I  Y  Q  R  C  Y  *  S  C  S  S  N  D   : R  K  S  C  Q  S  Q  W  P  Y  L  *  C  W  *  P  *  Q  *  S  Y  C  Q  A  A  G  *  N  D  D  *   : G  V  C  *  G  E  W  R  V  F  Y  *  N  T  H  H  *  C  K  F  *  R  I  L  W  *  G  V  *  *  Q  *  Q  E  D  S  G  H  D  H  N  Q  Q  A  A  W :   L  E  P  K  D  F  L  M  G  L  A  R  I  H  T  H  I  P  T  Q  D  I  R  *  G  C  Q  A  G  H  V  *  N  N  S  K  L  I  V  R  C  L  L  A  G  L  S  I  S  C  Y  D  S  P  E  *  K  S  T  *  S  F  T  S  Y  T  *  F  Y  V  P  S  V  M  N  H  V  F  Y  F  V  T  A  Y  L  L  R  N  L  K  T  F  L  T  I  Q  C  *  G  Y  *  M  D  R  N  A  G  V  I  G  W  V  Y  Y  V  T  S  A  S  K  *  L  S  G  Y  *  I  K  E  K  L  S  C  S  Y  K  I  C  C  R  L  Y  I  Y  S  Y  V  W  K  H  L  V  S  F  S  S  T  C  *  W  G  Y  K  F  S  Y  L  F  :  E  K   </second_frame>
            <third_frame>   S  P  P  S  F  F  L  L  *  I  H  S  P  S  K  T  F  T  Y  I  S  I  H  F  N  I  E  R  E  T  E  K  S  I  L  K  K  I  A  V  R  E  D  L  Q  *  L  E  M  A  G  R  V  D  L  D  G  N  P  I  K  Q  I  T  I  C  M  I  G  A  G  G  F  I  G  S  H  L  C  E  K  L  L  S  E  T  P  H  K  V  L  A  V  D  V  Y  S  D  K  I  K  H  L  L  E  P  A  T  V  T  W  A  D  R  I  Q  F  H  R  I  N  I  K  N  D  S  R  L  E  G  L  I  K  M  A  D  L  :  T  I  N  L  A  A  I  C  T  P  A  D  Y  N  T  R  P  L  D  T  I  Y  S  N  F  I  D  A  L  P  V  :  V  K  Y  C  S  E  N  G  K  R  L  I  H  F  S  T  C  E  V  Y  G  K  T  I  G  A  F  L  P  K  D  S  P  L  R  Q  :  D  P  A  Y  Y  V  L  K  E  D  T  S  P  C  I  F  G  P  I  E  K  Q  R  W  S  Y  A  C  A  K  Q  L  I  E  R  L  V  Y   : A  E  G  A  E  N  G  L  E  F  T  I  V  R  P  F  N  W  I  G  P  R  M  D  F  I  P  G  I  D  G  P  S  E  G  V  P  R  V  L  A  C  F  S  N  :  N  L  L  R  R  E  P  L  K  L  V  D  G  G  E  S  Q  R  T  F  I  Y  I  K  D  A  I  E  A  V  L  L  M  I  :  E  N  P  A  R  A  N  G  H  I  F  N  V  G  N  P  N  N  E  V  T  V  R  Q  L  A  E  M  M  T  K  :  V  Y  A  K  V  S  G  E  S  S  I  E  T  P  T  I  D  V  S  S  K  E  F  Y  G  E  G  Y  D  D  S  D  K  R  I  P  D  M  T  I  I  N  R  Q  L   : G  W  N  P  K  T  S  L  W  D  L  L  E  S  T  L  T  Y  Q  H  R  T  Y  A  E  A  V  K  Q  A  M  S  K  T  T  A  N  *  L  F  A  A  C  W  Q  V  F  Q  Y  L  V  T  I  L  L  S  K  N  L  H  S  P  S  P  H  T  R  N  F  T  S  L  L  *  *  I  M  Y  S  I  L  *  Q  H  I  Y  *  E  I  *  K  P  F  *  Q  Y  N  A  K  D  T  R  W  T  G  M  Q  V  S  *  A  G  C  I  M  S  L  V  L  Q  N  S  Y  R  G  I  R  *  K  K  S  C  P  V  L  I  R  S  V  V  V  Y  I  F  I  P  M  Y  G  N  I  L  Y  H  F  H  R  P  V  D  G  A  I  N  F  P  I  Y  S :   K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110448" stop="110720"/>
                    <exon start="111951" stop="112043"/>
                    <exon start="112181" stop="112288"/>
                    <exon start="113814" stop="113928"/>
                    <exon start="114012" stop="114145"/>
                    <exon start="114243" stop="114344"/>
                    <exon start="114428" stop="114520"/>
                    <exon start="114630" stop="114765"/>
                    <exon start="114852" stop="114964"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEMAGRVDLDGNPIKQITICMIGAGGFIGSHLCEKLLSETPHKVLAVDVYSDKIKHLLEPATVTWADRIQFHRINIKNDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENGKRLIHFSTCEVYGKTIGAFLPKDSPLRQDPAYYVLKEDTSPCIFGPIEKQRWSYACAKQLIERLVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGESQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTKVYAKVSGESSIETPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAVKQAMSKTTAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="110308" e_stop="110720"/>
            <exon e_start="111951" e_stop="112043"/>
            <exon e_start="112181" e_stop="112288"/>
            <exon e_start="113814" e_stop="113928"/>
            <exon e_start="114012" e_stop="114145"/>
            <exon e_start="114243" e_stop="114344"/>
            <exon e_start="114428" e_stop="114520"/>
            <exon e_start="114630" e_stop="114765"/>
            <exon e_start="114852" e_stop="115118"/>
            <exon e_start="115172" e_stop="115356"/>
            <exon e_start="115646" e_stop="115657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.482" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.959"/>
          <exon-intron don_prob="0.000" acc_prob="0.916" e_score="0.919"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110308" e_stop="110720" e_length="413"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111951" e_stop="112043" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.962">
            <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112181" e_stop="112288" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113814" e_stop="113928" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114012" e_stop="114145" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.735" acc_prob="0.904">
            <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114243" e_stop="114344" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.966" acc_prob="0.886">
            <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="114428" e_stop="114520" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="114630" e_stop="114765" e_length="136"/>
          </exon>
          <intron i_serial="8" don_prob="0.482" acc_prob="0.980">
            <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="0.959">
            <gDNA_exon_boundary e_start="114852" e_stop="115118" e_length="267"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="115119" i_stop="115171" i_length="53"/>
          </intron>
          <exon e_serial="10" e_score="0.919">
            <gDNA_exon_boundary e_start="115172" e_stop="115356" e_length="185"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="115357" i_stop="115645" i_length="289"/>
          </intron>
          <exon e_serial="11" e_score="0.750">
            <gDNA_exon_boundary e_start="115646" e_stop="115657" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110308" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110308" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110372" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110374" stop="110720"/>
              <exon start="111951" stop="112036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110379" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110379" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110380" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110381" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110381" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110381" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110382" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110389" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110389" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110392" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110394" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110396" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110396" stop="110720"/>
              <exon start="111951" stop="112033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110402" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110411" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110412" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110418" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110431" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110433" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110434" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110443" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110445" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110450" stop="110720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110567" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110570" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110630" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110645" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110645" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110689" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111993" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111993" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113891" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114027" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114120" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114122" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115118"/>
              <exon start="115172" stop="115354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114674" stop="114765"/>
              <exon start="114852" stop="115118"/>
              <exon start="115172" stop="115356"/>
              <exon start="115646" stop="115657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416530" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114705" stop="114765"/>
              <exon start="114852" stop="115118"/>
              <exon start="115172" stop="115356"/>
              <exon start="115646" stop="115657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416529" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114957" stop="115118"/>
              <exon start="115172" stop="115356"/>
              <exon start="115646" stop="115657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115068" stop="115118"/>
              <exon start="115172" stop="115347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609299" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCTCCTCCCTCCTTTTTCTTGCTTTAAATACATTCACCGTCAAAAACCTTTACATACATATCGATTCACTTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG : ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG : GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG : GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG : CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT : AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC : GAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG : GTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG : GTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTT : GTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGGGCTATAAATTTTCCTATTTATTC : GAAAAAAATCAA</gDNA_template>
            <first_frame> A  L  L  P  P  F  S  C  F  K  Y  I  H  R  Q  K  P  L  H  T  Y  R  F  T  S  I  *  R  E  K  L  K  K  V  S  *  K  K  L  Q  *  E  R  I  C  S  N  W  K  W  Q  E  E  *  I  W  T  V  I  P  L  S  R  L  R  Y  A  *  L  V  P  V  D  S  L  V  L  I  Y  V  R  S  F  C  R  R  L  L  I  R  C  L  L  S  M  F  T  V  I  R  L  S  I  C  L  N  R  R  R  L  L  G  L  I  E  F  S  F  I  E  S  I  L  R  M  I  L  A  L  K  V  S  S  K  W  Q  I  * :   P  *  I  L  L  R  S  A  H  L  Q  I  T  T  L  V  H  L  I  Q  F  T  A  I  S  S  M  L  Y  Q  W :   S  S  T  A  Q  K  M  E  S  V  S  F  T  S  Q  L  V  K  F  M  G  K  P  *  V  P  F  Y  R  K  T  A  H  S  G  R :   I  L  L  I  M  C  L  R  K  T  P  P  L  A  S  L  D  Q  L  R  S  S  G  G  P  M  H  V  Q  N  S  *  L  R  G  W  S  M  :  L  R  V  R  R  M  A  *  S  S  L  L  *  G  H  L  T  G  L  V  L  G  W  I  L  F  P  A  L  M  V  L  V  K  V  F  Q  E  C  *  L  A  L  V  I :   T  F  *  D  V  S  L  *  N  L  W  M  G  E  N  L  K  G  P  S  Y  I  S  K  M  L  L  K  L  F  F  *  *  S :   K  I  L  P  E  P  M  A  I  S  L  M  L  V  T  L  T  M  K  L  L  S  G  S  W  L  K  *  *  L  R :   C  M  L  R  *  V  E  S  L  L  L  K  H  P  P  L  M  *  V  L  K  N  F  M  V  R  G  M  M  T  V  T  R  G  F  R  T  *  P  *  S  T  G  S  L  :  V  G  T  Q  R  L  P  Y  G  T  C  *  N  P  H  S  H  T  N  T  G  H  T  L  R  L  S  S  R  P  C  L  K  Q  Q  Q  I  D  C  S  L  L  V  G  R  S  F  N  I  L  L  R  F  S  *  V  K  I  Y  I  V  L  H  L  I  H  V  I  L  R  P  F  C  N  E  S  C  I  L  F  C  D  S  I  F  I  K  K  F  :  V  S  *  A  G  C  I  M  S  L  V  L  Q  N  S  Y  R  G  I  R  *  K  K  S  C  P  V  L  I  R  S  V  V  V  Y  I  F  I  P  M  Y  G  N  I  L  Y  H  F  H  R  P  V  D  G  A  I  N  F  P  I  Y  S :   K  K  I   </first_frame>
            <second_frame>  L  S  S  L  L  F  L  A  L  N  T  F  T  V  K  N  L  Y  I  H  I  D  S  L  Q  Y  R  E  R  N  *  K  K  Y  L  K  K  N  C  S  E  R  G  F  A  V  I  G  N  G  R  K  S  R  S  G  R  *  S  H  *  A  D  Y  D  M  H  D  W  C  R  W  I  H  W  F  S  F  M  *  E  A  S  V  G  D  S  S  *  G  A  C  C  R  C  L  Q  *  *  D  *  A  F  A  *  T  G  D  G  Y  L  G  *  S  N  S  V  S  S  N  Q  Y  *  E  *  F  S  P  *  R  S  H  Q  N  G  R  S   : D  H  K  S  C  C  D  L  H  T  C  R  L  Q  H  S  S  T  *  Y  N  L  Q  Q  F  H  R  C  S  T  S   : G  Q  V  L  L  R  K  W  K  A  S  H  S  L  L  N  L  *  S  L  W  E  N  H  R  C  L  F  T  E  R  Q  P  T  P  A   : G  S  C  L  L  C  A  *  G  R  H  L  P  L  H  L  W  T  N  *  E  A  A  V  V  L  C  M  C  K  T  V  D  *  E  A  G  L  C :   *  G  C  G  E  W  L  R  V  H  Y  C  K  A  I  *  L  D  W  S  *  D  G  F  Y  S  R  H  *  W  S  *  *  R  C  S  K  S  V  S  L  L  *  *   : *  P  F  K  T  *  A  F  E  T  C  G  W  G  R  I  S  K  D  L  H  I  Y  Q  R  C  Y  *  S  C  S  S  N  D   : R  K  S  C  Q  S  Q  W  P  Y  L  *  C  W  *  P  *  Q  *  S  Y  C  Q  A  A  G  *  N  D  D  *   : G  V  C  *  G  E  W  R  V  F  Y  *  N  T  H  H  *  C  K  F  *  R  I  L  W  *  G  V  *  *  Q  *  Q  E  D  S  G  H  D  H  N  Q  Q  A  A  W :   L  E  P  K  D  F  L  M  G  L  A  R  I  H  T  H  I  P  T  Q  D  I  R  *  G  C  Q  A  G  H  V  *  N  N  S  K  L  I  V  R  C  L  L  A  G  L  S  I  S  C  Y  D  S  P  E  *  K  S  T  *  S  F  T  S  Y  T  *  F  Y  V  P  S  V  M  N  H  V  F  Y  F  V  T  A  Y  L  L  R  N  L :   C  H  R  L  G  V  L  C  H  *  C  F  K  I  V  I  G  V  L  D  K  R  K  A  V  L  F  L  *  D  L  L  S  S  I  Y  L  F  L  C  M  E  T  S  C  I  I  F  I  D  L  L  M  G  L  *  I  F  L  F  I   : R  K  K  S  </second_frame>
            <third_frame>   S  P  P  S  F  F  L  L  *  I  H  S  P  S  K  T  F  T  Y  I  S  I  H  F  N  I  E  R  E  T  E  K  S  I  L  K  K  I  A  V  R  E  D  L  Q  *  L  E  M  A  G  R  V  D  L  D  G  N  P  I  K  Q  I  T  I  C  M  I  G  A  G  G  F  I  G  S  H  L  C  E  K  L  L  S  E  T  P  H  K  V  L  A  V  D  V  Y  S  D  K  I  K  H  L  L  E  P  A  T  V  T  W  A  D  R  I  Q  F  H  R  I  N  I  K  N  D  S  R  L  E  G  L  I  K  M  A  D  L  :  T  I  N  L  A  A  I  C  T  P  A  D  Y  N  T  R  P  L  D  T  I  Y  S  N  F  I  D  A  L  P  V  :  V  K  Y  C  S  E  N  G  K  R  L  I  H  F  S  T  C  E  V  Y  G  K  T  I  G  A  F  L  P  K  D  S  P  L  R  Q  :  D  P  A  Y  Y  V  L  K  E  D  T  S  P  C  I  F  G  P  I  E  K  Q  R  W  S  Y  A  C  A  K  Q  L  I  E  R  L  V  Y   : A  E  G  A  E  N  G  L  E  F  T  I  V  R  P  F  N  W  I  G  P  R  M  D  F  I  P  G  I  D  G  P  S  E  G  V  P  R  V  L  A  C  F  S  N  :  N  L  L  R  R  E  P  L  K  L  V  D  G  G  E  S  Q  R  T  F  I  Y  I  K  D  A  I  E  A  V  L  L  M  I  :  E  N  P  A  R  A  N  G  H  I  F  N  V  G  N  P  N  N  E  V  T  V  R  Q  L  A  E  M  M  T  K  :  V  Y  A  K  V  S  G  E  S  S  I  E  T  P  T  I  D  V  S  S  K  E  F  Y  G  E  G  Y  D  D  S  D  K  R  I  P  D  M  T  I  I  N  R  Q  L   : G  W  N  P  K  T  S  L  W  D  L  L  E  S  T  L  T  Y  Q  H  R  T  Y  A  E  A  V  K  Q  A  M  S  K  T  T  A  N  *  L  F  A  A  C  W  Q  V  F  Q  Y  L  V  T  I  L  L  S  K  N  L  H  S  P  S  P  H  T  R  N  F  T  S  L  L  *  *  I  M  Y  S  I  L  *  Q  H  I  Y  *  E  I   : C  V  I  G  W  V  Y  Y  V  T  S  A  S  K  *  L  S  G  Y  *  I  K  E  K  L  S  C  S  Y  K  I  C  C  R  L  Y  I  Y  S  Y  V  W  K  H  L  V  S  F  S  S  T  C  *  W  G  Y  K  F  S  Y  L  F  :  E  K  N  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110448" stop="110720"/>
                    <exon start="111951" stop="112043"/>
                    <exon start="112181" stop="112288"/>
                    <exon start="113814" stop="113928"/>
                    <exon start="114012" stop="114145"/>
                    <exon start="114243" stop="114344"/>
                    <exon start="114428" stop="114520"/>
                    <exon start="114630" stop="114765"/>
                    <exon start="114852" stop="114964"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEMAGRVDLDGNPIKQITICMIGAGGFIGSHLCEKLLSETPHKVLAVDVYSDKIKHLLEPATVTWADRIQFHRINIKNDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENGKRLIHFSTCEVYGKTIGAFLPKDSPLRQDPAYYVLKEDTSPCIFGPIEKQRWSYACAKQLIERLVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGESQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTKVYAKVSGESSIETPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAVKQAMSKTTAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="110308" e_stop="110720"/>
            <exon e_start="111951" e_stop="112043"/>
            <exon e_start="112181" e_stop="112288"/>
            <exon e_start="113814" e_stop="113928"/>
            <exon e_start="114012" e_stop="114145"/>
            <exon e_start="114243" e_stop="114345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.904" e_score="1.000"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110308" e_stop="110720" e_length="413"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111951" e_stop="112043" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.962">
            <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112181" e_stop="112288" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113814" e_stop="113928" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114012" e_stop="114145" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.735" acc_prob="0.904">
            <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="0.951">
            <gDNA_exon_boundary e_start="114243" e_stop="114345" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110308" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110308" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110372" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110374" stop="110720"/>
              <exon start="111951" stop="112036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110379" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110379" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110380" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110381" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110381" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110381" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110382" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110389" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110389" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110392" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110394" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110396" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110396" stop="110720"/>
              <exon start="111951" stop="112033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110402" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110411" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110412" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110418" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110433" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110442" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110443" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110445" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110450" stop="110720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110567" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110570" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110630" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110645" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110645" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110689" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCTCCTCCCTCCTTTTTCTTGCTTTAAATACATTCACCGTCAAAAACCTTTACATACATATCGATTCACTTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG : ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG : GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG : GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG : CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT : AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCG</gDNA_template>
            <first_frame> A  L  L  P  P  F  S  C  F  K  Y  I  H  R  Q  K  P  L  H  T  Y  R  F  T  S  I  *  R  E  K  L  K  K  V  S  *  K  K  L  Q  *  E  R  I  C  S  N  W  K  W  Q  E  E  *  I  W  T  V  I  P  L  S  R  L  R  Y  A  *  L  V  P  V  D  S  L  V  L  I  Y  V  R  S  F  C  R  R  L  L  I  R  C  L  L  S  M  F  T  V  I  R  L  S  I  C  L  N  R  R  R  L  L  G  L  I  E  F  S  F  I  E  S  I  L  R  M  I  L  A  L  K  V  S  S  K  W  Q  I  * :   P  *  I  L  L  R  S  A  H  L  Q  I  T  T  L  V  H  L  I  Q  F  T  A  I  S  S  M  L  Y  Q  W :   S  S  T  A  Q  K  M  E  S  V  S  F  T  S  Q  L  V  K  F  M  G  K  P  *  V  P  F  Y  R  K  T  A  H  S  G  R :   I  L  L  I  M  C  L  R  K  T  P  P  L  A  S  L  D  Q  L  R  S  S  G  G  P  M  H  V  Q  N  S  *  L  R  G  W  S  M  :  L  R  V  R  R  M  A  *  S  S  L  L  *  G  H  L  T  G  L  V  L  G  W  I  L  F  P  A  L  M  V  L  V  K  V  F  Q  E  C  *  L  A  L  V  I :   T  F  *  D  V  S  L  *  N  L  W  M  G  E  N  L  K  G  P  S  Y  I  S  K  M  L  L  K  L  F  F  *  *  S </first_frame>
            <second_frame>  L  S  S  L  L  F  L  A  L  N  T  F  T  V  K  N  L  Y  I  H  I  D  S  L  Q  Y  R  E  R  N  *  K  K  Y  L  K  K  N  C  S  E  R  G  F  A  V  I  G  N  G  R  K  S  R  S  G  R  *  S  H  *  A  D  Y  D  M  H  D  W  C  R  W  I  H  W  F  S  F  M  *  E  A  S  V  G  D  S  S  *  G  A  C  C  R  C  L  Q  *  *  D  *  A  F  A  *  T  G  D  G  Y  L  G  *  S  N  S  V  S  S  N  Q  Y  *  E  *  F  S  P  *  R  S  H  Q  N  G  R  S   : D  H  K  S  C  C  D  L  H  T  C  R  L  Q  H  S  S  T  *  Y  N  L  Q  Q  F  H  R  C  S  T  S   : G  Q  V  L  L  R  K  W  K  A  S  H  S  L  L  N  L  *  S  L  W  E  N  H  R  C  L  F  T  E  R  Q  P  T  P  A   : G  S  C  L  L  C  A  *  G  R  H  L  P  L  H  L  W  T  N  *  E  A  A  V  V  L  C  M  C  K  T  V  D  *  E  A  G  L  C :   *  G  C  G  E  W  L  R  V  H  Y  C  K  A  I  *  L  D  W  S  *  D  G  F  Y  S  R  H  *  W  S  *  *  R  C  S  K  S  V  S  L  L  *  *   : *  P  F  K  T  *  A  F  E  T  C  G  W  G  R  I  S  K  D  L  H  I  Y  Q  R  C  Y  *  S  C  S  S  N  D   </second_frame>
            <third_frame>   S  P  P  S  F  F  L  L  *  I  H  S  P  S  K  T  F  T  Y  I  S  I  H  F  N  I  E  R  E  T  E  K  S  I  L  K  K  I  A  V  R  E  D  L  Q  *  L  E  M  A  G  R  V  D  L  D  G  N  P  I  K  Q  I  T  I  C  M  I  G  A  G  G  F  I  G  S  H  L  C  E  K  L  L  S  E  T  P  H  K  V  L  A  V  D  V  Y  S  D  K  I  K  H  L  L  E  P  A  T  V  T  W  A  D  R  I  Q  F  H  R  I  N  I  K  N  D  S  R  L  E  G  L  I  K  M  A  D  L  :  T  I  N  L  A  A  I  C  T  P  A  D  Y  N  T  R  P  L  D  T  I  Y  S  N  F  I  D  A  L  P  V  :  V  K  Y  C  S  E  N  G  K  R  L  I  H  F  S  T  C  E  V  Y  G  K  T  I  G  A  F  L  P  K  D  S  P  L  R  Q  :  D  P  A  Y  Y  V  L  K  E  D  T  S  P  C  I  F  G  P  I  E  K  Q  R  W  S  Y  A  C  A  K  Q  L  I  E  R  L  V  Y   : A  E  G  A  E  N  G  L  E  F  T  I  V  R  P  F  N  W  I  G  P  R  M  D  F  I  P  G  I  D  G  P  S  E  G  V  P  R  V  L  A  C  F  S  N  :  N  L  L  R  R  E  P  L  K  L  V  D  G  G  E  S  Q  R  T  F  I  Y  I  K  D  A  I  E  A  V  L  L  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110448" stop="110720"/>
                    <exon start="111951" stop="112043"/>
                    <exon start="112181" stop="112288"/>
                    <exon start="113814" stop="113928"/>
                    <exon start="114012" stop="114145"/>
                    <exon start="114243" stop="114344"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEMAGRVDLDGNPIKQITICMIGAGGFIGSHLCEKLLSETPHKVLAVDVYSDKIKHLLEPATVTWADRIQFHRINIKNDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENGKRLIHFSTCEVYGKTIGAFLPKDSPLRQDPAYYVLKEDTSPCIFGPIEKQRWSYACAKQLIERLVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGESQRTFIYIKDAIEAVLLMI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="110393" e_stop="110538"/>
            <exon e_start="112214" e_stop="112288"/>
            <exon e_start="113814" e_stop="113928"/>
            <exon e_start="114012" e_stop="114145"/>
            <exon e_start="114243" e_stop="114344"/>
            <exon e_start="114428" e_stop="114520"/>
            <exon e_start="114630" e_stop="114765"/>
            <exon e_start="114852" e_stop="115356"/>
            <exon e_start="115646" e_stop="115653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-intron don_prob="1.000" acc_prob="0.951" e_score="0.987"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.482" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="110393" e_stop="110538" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110539" i_stop="112213" i_length="1675"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="112214" e_stop="112288" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113814" e_stop="113928" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114012" e_stop="114145" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.735" acc_prob="0.904">
            <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114243" e_stop="114344" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.886">
            <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114428" e_stop="114520" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="114630" e_stop="114765" e_length="136"/>
          </exon>
          <intron i_serial="7" don_prob="0.482" acc_prob="0.980">
            <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="114852" e_stop="115356" e_length="505"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="115357" i_stop="115645" i_length="289"/>
          </intron>
          <exon e_serial="9" e_score="0.875">
            <gDNA_exon_boundary e_start="115646" e_stop="115653" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110393" stop="110538"/>
              <exon start="112214" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113891" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114027" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114068" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577760" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114120" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114122" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114453" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114457" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114458" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115356"/>
              <exon start="115646" stop="115653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114475" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114505" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTC : ATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG : GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG : CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT : AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC : GAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG : GTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG : GTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGGGCTATAAATTTTCCTATTTATTC : GAAAAAAA</gDNA_template>
            <first_frame> R  N  *  K  K  Y  L  K  K  N  C  S  E  R  G  F  A  V  I  G  N  G  R  K  S  R  S  G  R  *  S  H  *  A  D  Y  D  M  H  D  W  C  R  W  I  H  W  F  S :   F  T  S  Q  L  V  K  F  M  G  K  P  *  V  P  F  Y  R  K  T  A  H  S  G  R :   I  L  L  I  M  C  L  R  K  T  P  P  L  A  S  L  D  Q  L  R  S  S  G  G  P  M  H  V  Q  N  S  *  L  R  G  W  S  M  :  L  R  V  R  R  M  A  *  S  S  L  L  *  G  H  L  T  G  L  V  L  G  W  I  L  F  P  A  L  M  V  L  V  K  V  F  Q  E  C  *  L  A  L  V  I :   T  F  *  D  V  S  L  *  N  L  W  M  G  E  N  L  K  G  P  S  Y  I  S  K  M  L  L  K  L  F  F  *  *  S :   K  I  L  P  E  P  M  A  I  S  L  M  L  V  T  L  T  M  K  L  L  S  G  S  W  L  K  *  *  L  R :   C  M  L  R  *  V  E  S  L  L  L  K  H  P  P  L  M  *  V  L  K  N  F  M  V  R  G  M  M  T  V  T  R  G  F  R  T  *  P  *  S  T  G  S  L  :  V  G  T  Q  R  L  P  Y  G  T  C  *  N  P  H  S  H  T  N  T  G  H  T  L  R  L  S  S  R  P  C  L  K  Q  Q  Q  I  D  C  S  L  L  V  G  R  S  F  N  I  L  L  R  F  S  *  V  K  I  Y  I  V  L  H  L  I  H  V  I  L  R  P  F  C  N  E  S  C  I  L  F  C  D  S  I  F  I  K  K  F  E  N  L  F  N  N  T  M  L  R  I  L  D  G  Q  E  C  R  C  H  R  L  G  V  L  C  H  *  C  F  K  I  V  I  G  V  L  D  K  R  K  A  V  L  F  L  *  D  L  L  S  S  I  Y  L  F  L  C  M  E  T  S  C  I  I  F  I  D  L  L  M  G  L  *  I  F  L  F  I   : R  K  K </first_frame>
            <second_frame>  E  T  E  K  S  I  L  K  K  I  A  V  R  E  D  L  Q  *  L  E  M  A  G  R  V  D  L  D  G  N  P  I  K  Q  I  T  I  C  M  I  G  A  G  G  F  I  G  S   : H  S  L  L  N  L  *  S  L  W  E  N  H  R  C  L  F  T  E  R  Q  P  T  P  A   : G  S  C  L  L  C  A  *  G  R  H  L  P  L  H  L  W  T  N  *  E  A  A  V  V  L  C  M  C  K  T  V  D  *  E  A  G  L  C :   *  G  C  G  E  W  L  R  V  H  Y  C  K  A  I  *  L  D  W  S  *  D  G  F  Y  S  R  H  *  W  S  *  *  R  C  S  K  S  V  S  L  L  *  *   : *  P  F  K  T  *  A  F  E  T  C  G  W  G  R  I  S  K  D  L  H  I  Y  Q  R  C  Y  *  S  C  S  S  N  D   : R  K  S  C  Q  S  Q  W  P  Y  L  *  C  W  *  P  *  Q  *  S  Y  C  Q  A  A  G  *  N  D  D  *   : G  V  C  *  G  E  W  R  V  F  Y  *  N  T  H  H  *  C  K  F  *  R  I  L  W  *  G  V  *  *  Q  *  Q  E  D  S  G  H  D  H  N  Q  Q  A  A  W :   L  E  P  K  D  F  L  M  G  L  A  R  I  H  T  H  I  P  T  Q  D  I  R  *  G  C  Q  A  G  H  V  *  N  N  S  K  L  I  V  R  C  L  L  A  G  L  S  I  S  C  Y  D  S  P  E  *  K  S  T  *  S  F  T  S  Y  T  *  F  Y  V  P  S  V  M  N  H  V  F  Y  F  V  T  A  Y  L  L  R  N  L  K  T  F  L  T  I  Q  C  *  G  Y  *  M  D  R  N  A  G  V  I  G  W  V  Y  Y  V  T  S  A  S  K  *  L  S  G  Y  *  I  K  E  K  L  S  C  S  Y  K  I  C  C  R  L  Y  I  Y  S  Y  V  W  K  H  L  V  S  F  S  S  T  C  *  W  G  Y  K  F  S  Y  L  F  :  E  K   </second_frame>
            <third_frame>   K  L  K  K  V  S  *  K  K  L  Q  *  E  R  I  C  S  N  W  K  W  Q  E  E  *  I  W  T  V  I  P  L  S  R  L  R  Y  A  *  L  V  P  V  D  S  L  V  L  :  I  H  F  S  T  C  E  V  Y  G  K  T  I  G  A  F  L  P  K  D  S  P  L  R  Q  :  D  P  A  Y  Y  V  L  K  E  D  T  S  P  C  I  F  G  P  I  E  K  Q  R  W  S  Y  A  C  A  K  Q  L  I  E  R  L  V  Y   : A  E  G  A  E  N  G  L  E  F  T  I  V  R  P  F  N  W  I  G  P  R  M  D  F  I  P  G  I  D  G  P  S  E  G  V  P  R  V  L  A  C  F  S  N  :  N  L  L  R  R  E  P  L  K  L  V  D  G  G  E  S  Q  R  T  F  I  Y  I  K  D  A  I  E  A  V  L  L  M  I  :  E  N  P  A  R  A  N  G  H  I  F  N  V  G  N  P  N  N  E  V  T  V  R  Q  L  A  E  M  M  T  K  :  V  Y  A  K  V  S  G  E  S  S  I  E  T  P  T  I  D  V  S  S  K  E  F  Y  G  E  G  Y  D  D  S  D  K  R  I  P  D  M  T  I  I  N  R  Q  L   : G  W  N  P  K  T  S  L  W  D  L  L  E  S  T  L  T  Y  Q  H  R  T  Y  A  E  A  V  K  Q  A  M  S  K  T  T  A  N  *  L  F  A  A  C  W  Q  V  F  Q  Y  L  V  T  I  L  L  S  K  N  L  H  S  P  S  P  H  T  R  N  F  T  S  L  L  *  *  I  M  Y  S  I  L  *  Q  H  I  Y  *  E  I  *  K  P  F  *  Q  Y  N  A  K  D  T  R  W  T  G  M  Q  V  S  *  A  G  C  I  M  S  L  V  L  Q  N  S  Y  R  G  I  R  *  K  K  S  C  P  V  L  I  R  S  V  V  V  Y  I  F  I  P  M  Y  G  N  I  L  Y  H  F  H  R  P  V  D  G  A  I  N  F  P  I  Y  S :   K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110512" stop="110538"/>
                    <exon start="112214" stop="112288"/>
                    <exon start="113814" stop="113928"/>
                    <exon start="114012" stop="114145"/>
                    <exon start="114243" stop="114344"/>
                    <exon start="114428" stop="114520"/>
                    <exon start="114630" stop="114765"/>
                    <exon start="114852" stop="114964"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVPVDSLVLIHFSTCEVYGKTIGAFLPKDSPLRQDPAYYVLKEDTSPCIFGPIEKQRWSYACAKQLIERLVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGESQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTKVYAKVSGESSIETPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAVKQAMSKTTAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="120442" PGL_stop="120048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120442" e_stop="120048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="120442" e_stop="120048" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120442" stop="120048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120438" stop="120076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAATAGAAATGCCGAAAAGAAGTCGCATAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAAAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  V  N  E  A  F  Q  V  A  A  M  I  E  K  L  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  R  N  A  E  K  K  S  H  K  S  S  T  I  I  G  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  L  F  K  W  L  Q  *  S  R  S  C  L  L  R  G  M  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  I  E  M  P  K  R  S  R  I  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  T  G  R  S  Q  N  R  P  R  K  N  S  K  A  T  V  I  I  V  A  R  L  V  I  D  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  G  T  S  T  Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  R  E  V  A  S  F  V  E  *  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  G  R  *  *  K  C  R  K  E  V  A  *  E  F  N  N  H  W  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  Q  R  A  E  V  R  T  G  Q  E  K  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120442" stop="120050"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVQELQLILHDLIAEDMVVNEAFQVAAMIEKLPPSWNDFKNYLKHKRKEMKLEDLVIRLKIEEDNRNAEKKSHKSSTIIGVNIVEEAPTKDKKRKKSNGQKSEQAKKKFKGNCYNCGKAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="120887" PGL_stop="121759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120887" e_stop="121759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="120887" e_stop="121759" e_length="873"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120887" stop="121759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120887" stop="121461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120888" stop="121298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATAATTGCAGACTTAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGAATTATATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTAATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTATAAAAAATAATTTAATCTGTAAAACTTACCAGAATGTTGAATACTCTTTTATTTCTCTTTTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAATATATGTTTTTAAGAAGAAGGAAGCTCAGAAAATTCGTTCGTAAATATTTTGAATACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCTACCCTTTCAGAATTGACACGGCCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAATCATGGCGGGAAATTTTGAATATAACGGAATTTAAAACGGGTCACTCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTAAAAATATTTCGGTTAAATTCTGTTATCAACTAATTTATTGAAAAATAATTTTTGGCCATTTAAATTAATTAATAAATAATTAAAATAAATTTTGTCCAAAAAATTATCTCTCGATCGATCAAAAGCCAAAGCCAAAGCCGACGCGAGCGA</gDNA_template>
            <first_frame> I  I  I  A  D  L  K  E  Y  K  I  T  K  I  F  V  S  T  R  N  T  E  L  Y  N  F  L  K  I  V  A  N  L  C  *  E  N  Q  K  L  L  V  V  I  N  H  S  E  T  R  S  N  *  D  F  *  N  Q  *  I  R  *  T  E  I  Y  L  *  K  I  I  *  S  V  K  L  T  R  M  L  N  T  L  L  F  L  F  L  G  K  K  S  S  P  L  N  S  Q  C  P  L  K  E  I  I  P  L  *  Y  P  R  F  D  L  E  Y  N  L  P  G  *  N  D  L  N  Q  *  S  I  D  T  K  N  S  T  V  S  E  S  I  H  S  R  K  V  H  E  E  I  Y  V  F  K  K  K  E  A  Q  K  I  R  S  *  I  F  *  I  L  N  G  I  Y  R  Q  E  *  Y  I  L  K  G  C  Y  P  F  R  I  D  T  A  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  N  H  G  G  K  F  *  I  *  R  N  L  K  R  V  T  R  A  D  P  S  R  V  G  L  T  K  K  L  K  I  F  R  L  N  S  V  I  N  *  F  I  E  K  *  F  L  A  I  *  I  N  *  *  I  I  K  I  N  F  V  Q  K  I  I  S  R  S  I  K  S  Q  S  Q  S  R  R  E  R </first_frame>
            <second_frame>  L  *  L  Q  T  *  R  S  I  K  S  Q  R  F  L  S  P  P  E  T  Q  N  Y  I  I  S  L  R  L  L  P  I  C  V  K  K  I  R  N  Y  W  L  *  *  I  I  Q  K  H  E  V  T  E  I  F  R  T  S  K  *  D  E  Q  K  F  I  Y  K  K  *  F  N  L  *  N  L  P  E  C  *  I  L  F  Y  F  S  F  *  E  K  N  Q  V  H  *  I  H  S  V  P  L  R  K  L  F  P  S  S  I  R  G  L  I  W  N  I  T  S  Q  G  K  M  I  L  I  S  R  V  *  I  P  K  T  L  L  S  A  N  Q  S  T  A  G  K  Y  T  K  K  Y  M  F  L  R  R  R  K  L  R  K  F  V  R  K  Y  F  E  Y  *  M  V  F  I  G  K  N  N  I  F  *  K  V  A  T  L  S  E  L  T  R  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  I  M  A  G  N  F  E  Y  N  G  I  *  N  G  S  L  A  R  I  R  V  G  S  G  *  L  K  S  *  K  Y  F  G  *  I  L  L  S  T  N  L  L  K  N  N  F  W  P  F  K  L  I  N  K  *  L  K  *  I  L  S  K  K  L  S  L  D  R  S  K  A  K  A  K  A  D  A  S   </second_frame>
            <third_frame>   Y  N  C  R  L  K  G  V  *  N  H  K  D  F  C  L  H  Q  K  H  R  I  I  *  F  P  *  D  C  C  Q  S  V  L  R  K  S  E  I  T  G  C  N  K  S  F  R  N  T  K  *  L  R  F  L  E  P  V  N  K  M  N  R  N  L  F  I  K  N  N  L  I  C  K  T  Y  Q  N  V  E  Y  S  F  I  S  L  F  R  K  K  I  K  S  T  E  F  T  V  S  P  *  G  N  Y  S  P  L  V  S  E  V  *  F  G  I  *  P  P  R  V  K  *  S  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  P  Q  Q  E  S  T  R  R  N  I  C  F  *  E  E  G  S  S  E  N  S  F  V  N  I  L  N  T  E  W  Y  L  *  A  R  I  I  Y  S  E  R  L  L  P  F  Q  N  *  H  G  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  Q  S  W  R  E  I  L  N  I  T  E  F  K  T  G  H  S  R  G  S  E  S  G  R  V  N  *  K  V  K  N  I  S  V  K  F  C  Y  Q  L  I  Y  *  K  I  I  F  G  H  L  N  *  L  I  N  N  *  N  K  F  C  P  K  N  Y  L  S  I  D  Q  K  P  K  P  K  P  T  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0072I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="124020" PGL_stop="123669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124020" e_stop="123669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="124020" e_stop="123669" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124020" stop="123669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATGATCTTGCAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCAAGGGGGATGGGATTGAAGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTCCCCTCCCTATGATGTGAGTGCATTATTTTCTGTAGTTTGTGAAGGTTGAGTTGATAAAAC</gDNA_template>
            <first_frame> N  G  K  S  R  P  I  R  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  D  Y  V  K  S  C  D  D  L  A  D  P  L  T  K  A  L  T  R  E  K  V  W  S  T  S  R  G  M  G  L  K  P  T  N  S  *  V  I  Y  E  E  T  Q  P  G  D  *  R  S  Y  N  Q  V  Q  R  E  K  L  I  I  *  *  L  V  V  K  N  A  L  F  F  P  L  P  M  M  *  V  H  Y  F  L  *  F  V  K  V  E  L  I  K  </first_frame>
            <second_frame>  M  V  N  P  D  L  *  G  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  I  M  S  N  L  V  M  I  L  Q  I  L  L  Q  R  P  *  Q  E  K  R  F  G  A  H  Q  G  G  W  D  *  S  L  Q  I  L  E  S  Y  M  R  K  P  N  L  G  T  R  D  P  I  T  R  F  K  G  K  N  *  S  Y  D  D  L  L  *  K  M  H  Y  F  F  P  S  L  *  C  E  C  I  I  F  C  S  L  *  R  L  S  *  *  N </second_frame>
            <third_frame>   W  *  I  Q  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  L  C  Q  I  L  *  *  S  C  R  S  S  Y  K  G  L  N  K  R  K  G  L  E  H  I  K  G  D  G  I  E  A  Y  K  F  L  S  H  I  *  G  N  P  T  W  G  L  E  I  L  *  P  G  S  K  G  K  T  N  H  M  M  T  C  C  E  K  C  T  I  F  S  P  P  Y  D  V  S  A  L  F  S  V  V  C  E  G  *  V  D  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0072I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 523 chains have been computed
$ 
$ memory statistics:
$ 342528 bytes spliced alignments in total
$ 162 spliced alignments have been stored
$ 2114 bytes was the average size of a spliced alignment
$ 31152 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1639 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 577 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 06:08:55
-->
