<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 06:09:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4084" ref_strand="+" ref_description="SGN-M4084 cTOC-16-C7 [est_clones]">
      <seq>gccactctccgctttactcctcctctatatctttttccggcggccggcagctccttcttcagcttcgtgaattctgattgttttgacagagatgggtgccaaagggaggaagaaaagcataactaagaagttgaagaagggtgctaacgaattctcagcttcttcggtttctaaagataaagctgctgactttctgccattggaaggtgggccggcaagaaaactcccggatactgaagtacgggaaagtaaagcgacaatattgtatattggaaggattccacatggattttatgagaatgaaatggaaggtttctttaagcaatttggtacaattaagaggcttagacttgcaaggaataaaaagacgggaaaatcaaagcattttggcttcatagaatttgagtcccctgaggttgctaaagtggttgcggataccatgcataactatctattatttgagcacttgttgcaagttcgtcttattcctcctgagcatgttcatcccagattgtggaaaggtgtgaaccgctggtacaaaccgttggactgggttaaaattgaaaggaagcgtcaggacaaggaaagaacattggaagagcataataagttggttggagaaattctaaaacgtgacaaaaagaggcgaaagaggatcgaggcagctgggattgattacgagtgcccagaaatggtgggtgcaattcaggctgcaccaaagaagatcaggttcactgattagatctttataagtatagctcgtgaacgaaatagtatctatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="8200" stop="1495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7900" g_stop="7825" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7824" i_stop="6841" i_length="984">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6840" g_stop="6721" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="196" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="5057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="311" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4931" g_stop="4876" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="367" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4014" g_stop="3967" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="415" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106">
            <donor d_prob="0.390" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3860" g_stop="3763" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="513" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2993" g_stop="2924" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="583" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2741" g_stop="2631" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="694" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="2630" i_stop="1887" i_length="744">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1886" g_stop="1796" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="785" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-M4084" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7900" e_stop="7825"/>
          <exon e_start="6840" e_stop="6721"/>
          <exon e_start="5171" e_stop="5057"/>
          <exon e_start="4931" e_stop="4876"/>
          <exon e_start="4014" e_stop="3967"/>
          <exon e_start="3860" e_stop="3763"/>
          <exon e_start="2993" e_stop="2924"/>
          <exon e_start="2741" e_stop="2631"/>
          <exon e_start="1886" e_stop="1796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTGGTAATTAGTTTCATCTATACTTATCTATAATTGCAATGAACAGAGCAAATTTAGCTGTGTTTTTAAAATTAGTTAAATTGATGCTATTCTTTTCGTTACCAATGTGAATAATTTTGGCTGTTTTTCATGGTTGTTTATGATTTTTACATGTTTATTTGAAGTCAGAATACATAAAAAGACACTCAAAGTCGGTTTCAATTGTCATGCAAACACTACATCTTTAGTATGCACGTCTATACATCTCAATCTGACTTTACTGTGGCAGTTGAACACTGTAGTTTTGTTACAAAATGATCATCTTGATACTTCCAAAATTTAGTGTAACGTCAGTGTGGGGTGTCCAGGAGACAGAGTGGGGAAGAGTTTGAGTGGTGTCCAGACTTTGTTATATCGAAGTTAAAGTTTGAGAGTTCTACATATTAATTTGAAGTTGTACTGGCTGTCCATTTGATCAATAGTTCTAAATTTGTGATCGTAGGATTTCTAATTTAACTCATGAATCTCTTTAGGTTGATCAAGGATTTTTATCTAGGTATGATTTGCAATTTTCTGGCTACCTAATAGTGGCTCTTTTTTCAACCAACAAAAGTTGGGGTTAGGCAGGTAGAGACGTACACAAACCTTACCCATACCTTGGGAGATATAGAGTTGGTTTCTGATACACCCTCGACTCCAGGAAATAGTGGCTCTTTTTTCTAAGTTTAAGATTTTACATGTGAATTCACATTTCTAATCGCTATCCATTCGATAAATAGGTCCATATTTGTGATTGGTTGTATTTCTAATGAAAATTTTAGGCAGACTAGGATTTTTCTATATAGGCAGAATTTGCATTTTCCTGGCTACCTATCCAAATAATAGTGGCTCTTTTGTCATTCTGTGATTTGCATTTTTACTTGCTACCCATGTGATAAAATGAGTCTAAAATGGTCAACATGTCATACTTCCTGTGTAAGTAATGAGTTTTCTTTTGTGTCTACCAAGATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTGGTATGTTTCTGGTATATTAAAGTTAGTAAAGCTCCTCAATGCTCAAGAAGTTCTTAGAATGAGAGAACCGTTTAGAACAATTTTTCCCTTCATGTTTTTAGTTTATATCTTTCCCTCTTTGAGCCAAAGGGTCTAGGAAACCGCCTCTCTACCTTCTCAAGGTAGGGGTATGGTCTGCATGCACTCTACCTTCTCACGACCTCACCTGTGGGATTATACTGGATTTGTTGTTGTTGTTTTTAGTTTCTTTCATATTACATGTTAGTTTGTCTTTTTGGTATATATGTTTGAAATGACTCAATGTGTGTTGTGATGGTTGGAAACTCTATCTATTTGGTTGTTGGGAGATCGTTAGAAGATGTTTGCTATGTAGGACTGGAAAGGGAACTTAAAGGAAAAAATGGAGTAACTGTTTTGTTGGCTAATAGTTTCCCAGACATTTGATGGAACTAGCCACCATTCTTAATTACTTATAGGTCAGTTCTAATAGAAGTAGCCTATATGCATATAATATCCTGGTAAAGCATGTAAAATCTTCATCTTACAATTGAGATAGAATTGTTGACTTTAGAACATTTGTAAAAGAAAAATAGTTTCCTGGTTCTCTAATAGTGCTTCATGATCTAAAACAAAAAGATGTAGTTGCATATAAGGCGGAGTACTTGGCACGAGCTGGCATGGACACCATTATTTTTTCAAAAAGAAGATATTATGTAGTACTTGAAATATTTTAGTTCTTTACGAGAGTGATATCATGTAAATTTTAGTTTGAAACTCTCACGAGAGATTCCTGATTAAAAAACATTTGGATATAATAATGGAAAACTAAATAGATAACTGAAACATCTTTAGAATAATGTATATCTTACTTTTGAAAAGAAATAGATAATTAAAACATTTCAGCATACATTAATTCAAAATTAGTATTCCCTCAGTTCCAAGTTATGTTGACACTATTTCTTTATTAGTTCATACAAAAAGATGACATATTCTATATATCAAAATAAATTAAATATGAACTTCCCTAATGAGAAGCTTCTATAGCCTCACAAATGTTATGCCATTTTTTTAGAAGGAAAGCAACAAATGCTACGGCATGTTTTTAAGACCACAAGTATCAAAAGACATATAGCCCCACAAATGTCATAGCATGTTTAAAAGTTAAAAACTATAAAATTAAAAAATCTTTCGTTCTTTCTTAGACTCCATTTCGAGTCAAGCTATGTCACATTAATTGGAACAAAGGGAGTAGCTGGTTTTAAGTGTCACTGAGCATGGGTCATGCTTTAATAGATGTGGCAATGTTGGTATGTGAAGTTCAGGCAATGGGTATCAAGTCATGCTCAATTGTTCTCCACATAGAAGAGTATGAGTTGTTTGGATCATATAAAAACTACATTGCGTGTGGTTCCTTTATCTTCTTTAGTAAACTATGGTATCTTTACTGTAGTCAATCAGCAGCTCTGTTGTATAAGAAAAGAAGAAAGAAGATGACTTTTTTTTCTCTGATGGCCTGCTTTTTCTGACTTGTTTTCCTTTTATGTAATAGCCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAGGTTTGCATTTCTCACATTGAGTTTTTACATCCCCTTTCTACAACTTTTTAGCTTTTGCATCACTTTGTAACACTACAAAGTTAAATAACTTTCGTTGTGCCATTTTCTGCTGATGTTGTCTTTAGGTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAGGTGAATACTCCTACTGATTCCTTATCTTTAATTAATCAGTTTACTTTGACATCTTTGTCTAGTTTTGTCTTCTTGACCTACTTTCATCATATGCTTGTTGTCGCAATCTGACCTATGTTGCTCGGACTCTTCAAATGTCAATGGGTGCGTGCCATATTCTCCAAAAGTAGTGTATTTTTGGAGAACCCGACAAGGGTGTGTCATTGAAAGTGAAGAATCCGCACAACTTATAATCTGACAACTTAAGACTTAGAAAGACCCAAGCTGGTTGGAATGGGCTCGCTCAAGTACCTAAAAGTGATGACAATTTTTTTATCATCTATGATTAGTCATAGTATTTAAAAACGGATAGCTGCAGTGACTTTAGAATTTAGAATGTGACATGTGGTGGAGCTTAACTACATTATGATTCTGCATGTGAATATTGATGTTCCCTATTTCCTGTCACATTTTCCAATAAAAAGCACGCCTTCACCAGATTTATTCTTCTTTAAAAAATAGAATAGATATATCTCTTCCATTCCTTATGGGATGTTTTAGTCTATCATTGGTGAAGTTAACAGATGCTCTGGACTTGTTAAGTTCCACGTTAAGATTGTGATATATATCTCTTCAAAGTATTTAAATTGTGGTCCAATTGTTGGAAATTACACAGAAATTCTTATAGTTTAGGCGTGACAAGAACACTATCCATAATTTTCAACAATATGGCCTCTGCAGTAAAGGGATTCGTGTTGGATATATTCTTCAATTTTCTAAGTCCATAATACACTTTTACTTTACTTAATTGTCTCTCTATGTGGTAATCTTTTGATTCTTCTCTTATTTCCTTTTTTTTCTTGTGTCTTTTCCTCATGACAGACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAGGTTGTTCCTATTCCTGAGTAATTTAGTTTACGCACCCATATTTAGAGAATCCATTTGGTCATTTTCTTCCCATTGATCTTTATCTTGGGTTTTTGGACAATTGCAGGTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATTGTAAGGGTTCCATTTTTTAAGCCAAATGATATTCATTTTAAAATTTCATATTTCTTGGGTTGCTTTTAAAAGTACTTTAAAGCTCTTTTCTTCTCGTTCCCCCCTCCCTTTTTTTTGGGGTTGGGTGGGTAGGGGGCTGATACAATAGTAAGGTACTACTAGTCTGGAATACTGTCACTTCGTATTAAATTGAATCTGCTCCCCTTCCTACTCCTTGCTTAGAGACGGTAATGCCTTGCAAAAGACTATCAGCTTGCTGAAGTGGTGGGTTGAATTGATGGAAAATAATCTTTTCTTAACGACTTAACCAAATGCTCTTGGTCTAAGATTCCAAGTGATATATAACTTTTACCAAGAGATGGATACGAGTACTACGGGGTTGAAATGCTTGAAAATTATCAATGGAAAAGACTAACCTGAGATATTCCACCTTCAGAAGCAACCTGATGACAATCAGCAATATTGTGGCTGGTTCAAGTGTAAACAGGGATGTATTTCTAAACTAGGGTCTAGAGAGTTCTCCTTTCTGAATAATCCCACTGACGTGTGGTTCCACAATGCCAGTTCTGCTCTATGGAATTTACCATTATGTTACATATAATGTTCTATACTAAATTTATGTCATTTTTCTTGCAAAATTTTTGTGCATTATGATTATGAGTGAGTTTGGTATCGAATAGTCTGATGCATATGTAAGTGGTGTCTTTAAGTTATCGTCTTTTTTCCTCCTCTTTTTAGGTACAGCTCTAATTTGTATATTTGGTTCTAGGTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAGGTAGTGTTTGATCTTGTATGTGTGTGATTCAGATATTTACATGATATGCAAAAAACTGAGAGACATTGCTTTTAGTTATATATGAACTCTCTATCGCTTTTCCATAATGGTGCAAAGTTTGACATACATGTTTTTTGAACTGGTTTAAATGTGAAACTTATGGAGTGATGATAATTATCCAGGAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATGGTAATAGCAAATGTTCTTTATTACATTTCACATTATTATCTTGTGCTGCAAATTCTACTTATTTATGCATGTTTACTAAACTGGTCTAGGAACTACCTGTTTGCTAATTTGACAATTACTTGGATAGGATTTCCATAACATAAGAAATGACTACTGTTTTTGAGCATGGTATTAAGGAAGGAAATAAGTACCTAACATGTCAATTAGAAGGAAGATCAACACAAGGTTGTTACATGCATATGCAGATAATTTCCTAGGCTATCAGAAAATTACAGAACATCCGAATTTAGTACTAGATTTAGATGACAGAATCCATCAAATTGAGGGATTTTCTTGTATAAACTCGAGGAAAAAAAACAAGTTCCATGAGAAACATACAACACTGCAAAAAAGGCATTATGGTTGACAAATCTGTTCTTAGATAGCCACATTTGTCAGAACCAAAAAGAGCATTTTAGACATGTGAGAGATAGCAGTACCTGATGAATAATCGGCTTGCGGACAAGTTGGACACGGCCATTATTTAAAAGAATAGGTTTCCAGACATGTTACTTAGTACATGAACAACTCTCTATGTTTTACAATAAAACTTTGCATGAGGACTCTTCCGGTCAAAAATGTAGAAACGAGGCCTCTGTTATTCGTCTAGCAGATGAAAAAGAGCAAGACAGTTGCAACACTTCTGAAATTACTCTTAAAGAGAAGCATAAAAGTGATTTTTAACATTTACAATGTGATTTGCAGGTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCG</genome_strand>
        <mrna_strand>GCCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG.............................................................................................................................GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG..........................................................................................................GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG......................................................................................................................................................................................GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8803" ref_strand="+" ref_description="SGN-M8803 C2_At5g22830 [cosii_markers]">
      <seq>acggatacaaagattggaacataggctgtgggatttagaaccacgtgtccaagcactacttgcggttttgcctaaccgattaactgcagacatattggaggaacttcgtatcagtaaacagaaactggtggaattgggttccagggcaggggctcttaagcaaatgctacttgatattctagaggatactcatgaaatacgtcacatctgtataatcgggagaaattgtgtacttaagaaagaaaacgatgagatagagtgctccgtgcccctagataaggagattgctgaagaagaagaagaagaaattgaaatgcttttggaaaattatcttcagagatgtgaatcttgccatggtcaagctgaaaggctccttgattctgcaaaagaaatggaagactcaattgctgtaaatttgagttctcgaaggcttgaggtgagcagattcgagttgattctacaggttggaacattttgtgttgctgttggtgctctggttgcaggtatatttggcatgaacttaagatcctatctagaggaacatgtgtttgcattctggcttacaacagcaggaataattgttggggctgttctagccttttatctcatgtactggtatctcagaacgaggaaaatactgtaagcaactgctgattccgcaatcagatgatttaaatcttgaccaagattcagctttcaactgcagtaggtgcccaaaacaatgctggatactagcatatgtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="37267" stop="30727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36967" g_stop="36922" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36921" i_stop="36513" i_length="409">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36512" g_stop="36432" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="127" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36431" i_stop="36351" i_length="81">
            <donor d_prob="0.934" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36350" g_stop="36185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="293" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36184" i_stop="36093" i_length="92">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36092" g_stop="36047" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="339" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36046" i_stop="33834" i_length="2213">
            <donor d_prob="0.162" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33833" g_stop="33753" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="420" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32843" g_stop="32761" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="503" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31820" g_stop="31777" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="547" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31670" g_stop="31552" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="666" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31551" i_stop="31098" i_length="454">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="31097" g_stop="31016" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="746" r_length="80" r_score="0.817"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-M8803" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36967" e_stop="36922"/>
          <exon e_start="36512" e_stop="36432"/>
          <exon e_start="36350" e_stop="36185"/>
          <exon e_start="36092" e_stop="36047"/>
          <exon e_start="33833" e_stop="33753"/>
          <exon e_start="32843" e_stop="32761"/>
          <exon e_start="31820" e_stop="31777"/>
          <exon e_start="31670" e_stop="31552"/>
          <exon e_start="31097" e_stop="31016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATACAAAGATTGGAACATAGGCTGTGGGATTTAGAACCACGTGTGAGTATGGAACATAGTGAGTACATAAGTAATGTTTGTTTTTCTTCTTCTTTATATGAATTGTTCCCTTTCCCGCCCATTCCTTCTTCCACCAATTGACTATATGTTGGAAGCAAGTGACTTCTCCCAGTAAACAATGTTAACTTGGTGAAAGGGGATGAAAATGCAAGGAATTTTATCACTTCCCTTCAAATTTTCTGTCCATTACTTCTGTTCTAATATAGTATTTAAAAAAAACATTTTAGAGGATTGTCCCGAGCTTGTAATATGTTAAACAGATCTTATTCTCTCTTAATGTAACATGCTGGCCTACTTTCTAGAGTGGTCCCTTAGAATTAAGTATCTCTCTTTCCGCCTTACATGGTATGGTTACTTTCAATTTAGAAATACTCCGCCTCGCTTGGTGCAGGTCCAAGCACTACTTGAGGTTTTGCCCAACCGATTAACTGCAGACATATTGGAGGAACTTCGCATCAGTAAACAGAAACTAGTACGATTACCATTCAGCTGTACCTTATAAAATTAGTCTTGGTACATTCTATTATGACTTCCCTTCTCTTGCTTGTGACAGGTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCAAATCTGTATAATTGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAGGTGTGCTTATAATATTCCCATACTGATTCTTGCATACTATACCAGATCAATGATGCTTCTTACACTTGCTTATATGTCTTTCTATTTTGCAGAAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAGGTTGTGTATTGGTGCTATTTCAAATCCCTTAGTGTAGATAGTATACCTCATTACTTGTTGCATACTTAGTTTCTGTGTTTACTCTGCAATCACATAATCAAGCAACATGCACTGGTTGGGCTGTCAGATTCAAATGAAGCTCTGCAGAACAAGGAGCCAATAACAAAATTTAAAGGACACCGTAATTTTATTGAGCAATAGTACACATTAAATCTTGAAAAGTGAACTGCAGTTTTCTATCTCTGAACATGTCTTGATAACTTTTTTGGTGTATGGAAGGGCCTATTTCACATTCGAGGTAAGGTTTTCTCATTTGCTATATACTACCTGGCTCTTATAATGAAATATTGGCACAAACTTTTGAATGATTCTTCCTCCATCCCAATTCATATGACATTCTTTCTGTTTTGAAACATCCCAAACTGTTTGTCACATTTCTTTAATATGCATTTTTACAACTTTCTTGAATTCACATTCATTAACTTCAAATTTTGAACCTAACACATTAAAAAAGGCTCTTACCAAACACCCCAAAAAATGTTAAAGTATACCAACATGACTATGTCTTAACCTCATCTAGTTGATATGATTTGAATGGCTCTTTGTTTCTGATGTGTCCTATTCTTTGCTATAGTTTCCATCAGTCGTGAGGGCGTAGGTCTTTTAGGTCAACGTTTCTCCCTGTGATTTTAGGTCTACATTTCACATTTTTACACTCTACAAATTGATCTATTTGAAGGTCTATGTAGGACATGGCCAAATCATCCTTGGCAACCTCCCAATTTATCCTCTGGGTTTACTACTTGTACTTTTCATCTAATGTAAAGGGCAACCCGGTGCACTTACGCCCCCACTACGTGCAGACCTTAAAGGTTATTGTACGCAGTCTTACACTACATTTCTACTAGAGACTGTTTCCACAGCTCAAACATATGGCAACAACTGTACCAGTTACACCAGGAATCCCCTTCACTTCTCCTCGAATGTGATCACTTATATTTTTCTCCATCCTGACATTCTCTTCTACATAACCTCATCTTGTTGATATGTTGGGCTTTACTGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAGGTTTGTACATGTCTTATTACTTTTCTCTTAGCTCTTTATCCTTGTGTTGGTGAACTGGGTGATGTAAAGTTGAAAAGCGATAACAGTGCATATGTAGGGAAAATTGGTCTAAGTTGCTCTCGTTTATTTGGAGAACTCTTCTATTTAATTTCATCCCCTGAACTTTCTGAAACAGTTCTCATGCTTTTAGAAACACACTGGAAAGACACGTTATAAGCTGGTTTCTTTCTGCAGATAAATTTAGTGTCAGGCAGAAGTATCGATGGCCTGCTAACAGATTCTGCTAGCGTTCTTGATCAGTGAGCCGTTTGTTTTAGTTGTGAGGATGAGACATCAACCAAAGAAAAAACTAGGGCATTAAAAACTTCTATATATGACTTCACAAACGAGAACTTGTACTGAAATTTCAATGAGTGAATGTGTACTTTGTCTTGATAAGAAGAATAACTGTGTAAGAAACTGATAATCCCACAAAAGATGAAAAAAGTATTTAAAGAACAGAGTAAGAGATAAGTAGATGAAAGCATGTAACCATAAATTCCATACTGTACATTTGATAACCTTTTTCTTTCAAGTTTTGGTGTGATAAGTTGTGCTGTACCTTGACTAAACAATATTTAGACACGCTTTTACTGTAGAAAAGCAAGATTCTTTAGCTAAAACTTCTAAGATTTCTGGATATGAATGCATACAAGAAATCAATGAAATATCTACTAAGGTTGTCGATGATGATTGACAGATCAGTTAAAAGCTTGCAACTCAAACAAGATTATCAGATTTTTCAATTGGTGAATGTGTACTTGATTTGGTCGTGTTTTGACTCCTTTGTGGTCTACTGATGCATAATTATGAAATATCATAAGTGGGCAGACTTGATTTTAATGTAAATTTTTTGCTTGTCCTTTTCAGTTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAGGTATTTGTACAACTAATATAAACAGAAAACAAGCTAAACATATCCAGTATTTTCTTCTTTGATATCTCTTCATGAGAATCAGTTGTTGCCACTTAGTTTTGTCTGCTCAGACATTTTTTGTGATGCATGTGTCCAACTTCGTAATTCAAGTCTCCCTGATCAGTCCTTGTATTGACCTGAGAAAAAAAATTATAAACATACGAGGTTGTCAGTTATTGCTATCTGAGTAATCAGGTTTCATCCCTTTCAGGTTCCATTCCTGCTTCTAAGTGTCGTTAGAATTTTCCTTGGGTTAAAAACCACTCATGGTTTGAACGAAAATGTCATTCGTAATGAGGGGTTTGTACCTTTTCTGAGGCAAAATCTTTAACCTTTAGTTTCACACCTACAAATCGGTGCATCTGTAGGTTGATGTAGGACATGATCAGACCTTCTCTCATTTCATCCTAAATGTGTGCTCGTATAATATTTTATTACTTTGTGTTATAACGTTATCATTACCTGGTCATGTATAGTTTTTAAAAAATTTCATGCATATTCTCCTATGTCGATTTGTATTAAATGCTTCCAAGTAAAGACTAATTAATGATGTAGAAATTCTAAACTCCCATAAAAATTTTGGCACCACTTGATGCATGCATCTTTCGGCGAATATGTTCATTTTTAATCTGATTTTGTATGACCACACATTCAACATCCATCTTATTTCTTAGCATTTCATCTTGACAATCTAGAACCTTATTTAGTACAAATCTTTGGAGAGCCAGAAAGTAGAGAATGTGTTGCAATTGAATTATAAAATACAAAAGATGGTTTTCTTTTTCTATTACAGTGCTGCAAATAGTTCATCTGTATAAAAGGGGATAATGTTCAAATATTCAAATTGGTACGCATGTATACTAATACATGTTATAACACACCTACTTTGGCTTCTGTACAGGTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTGGTATGTTTCTTAGATCTCGAGAGCTCGTTATCAATATCTCCTCATCTTTGGGAAAATATTTCCAGAATTTTGTCTTCTCATCATATACTTGTCTAATTAAATGCAGTTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAGGTATAGCGCCTCCTCTCTAATAATTAGTAATCCCACTGTCCTAATTTATGTGACGTTGTTTGACTTCGCACAAGTTTAAGAAAAAAGACCTTAATATAAAAATATAAAAATGTGAAATTATTCTAGAACCAACTAAGAATGAAAGTATGTTATATAAATTGTGACAAAGAAGTCGGTACACACTCTCCTCCTTGCAGTGCACATGAAATAATGATTCTCTTGGACTCGTAAGTACTTGTAAGTGGAAATATGGATAAAAGGTGATGAACTAAAAGGTGACCTTGACTTTAATATACACTAATAACTGAATTCACGATAAAAATTTTTATGTAGTTGACTTATATATATCTGACCAAAAGTTGTTGGATTCGGTGGACCCATATGTCGTACCCTAGATTCACCTCAGCTGGCAACTTAACCGACCTGAGCTTGGAATTGTTTGTTTTATCTGCAGGTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATAT-TCTGC</genome_strand>
        <mrna_strand>ACGGATACAAAGATTGGAACATAGGCTGTGGGATTTAGAACCACGT.........................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAGCACTACTTGCGGTTTTGCCTAACCGATTAACTGCAGACATATTGGAGGAACTTCGTATCAGTAAACAGAAACTG.................................................................................GTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCACATCTGTATAATCGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCCGTGCCCCTAGATAAGGAGATTGCTGAAG............................................................................................AAGAAGAAGAAGAAATTGAAATGCTTTTGGAAAATTATCTTCAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAATTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGAAGGCTTGAGGTGAGCAGATTCGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTTGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG..........................................................................................................TTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTAGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAGCAACTGCTGATTCCGCAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTAAATC-TTGACCAAGATTCAGCTTTCAACTGCAGTAGGTGCCCAAAACAATGCTG--GATACTAGCATATGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7900" PGL_stop="1796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7900" e_stop="7825"/>
            <exon e_start="6840" e_stop="6721"/>
            <exon e_start="5171" e_stop="5057"/>
            <exon e_start="4931" e_stop="4876"/>
            <exon e_start="4014" e_stop="3967"/>
            <exon e_start="3860" e_stop="3763"/>
            <exon e_start="2993" e_stop="2924"/>
            <exon e_start="2741" e_stop="2631"/>
            <exon e_start="1886" e_stop="1796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.852" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.390" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7900" e_stop="7825" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.899">
            <gDNA_intron_boundary i_start="7824" i_stop="6841" i_length="984"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6840" e_stop="6721" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5171" e_stop="5057" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.898" acc_prob="0.852">
            <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4931" e_stop="4876" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4014" e_stop="3967" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.390" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3860" e_stop="3763" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2993" e_stop="2924" e_length="70"/>
          </exon>
          <intron i_serial="7" don_prob="0.881" acc_prob="0.992">
            <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2741" e_stop="2631" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2630" i_stop="1887" i_length="744"/>
          </intron>
          <exon e_serial="9" e_score="0.978">
            <gDNA_exon_boundary e_start="1886" e_stop="1796" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7900" stop="7825"/>
              <exon start="6840" stop="6721"/>
              <exon start="5171" stop="5057"/>
              <exon start="4931" stop="4876"/>
              <exon start="4014" stop="3967"/>
              <exon start="3860" stop="3763"/>
              <exon start="2993" stop="2924"/>
              <exon start="2741" stop="2631"/>
              <exon start="1886" stop="1796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4084" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTG : ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTG : CCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG : GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG : ACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG : GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATT : GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG : GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATG : GTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCG</gDNA_template>
            <first_frame> A  T  L  R  F  T  P  P  L  Y  L  F  P  A  A  G  S  S  F  F  S  F  V  N  S   : D  C  F  D  R  D  G  C  Q  R  E  E  E  K  H  N  *  E  V  E  E  G  C  *  R  I  L  S  F  F  G  F  *  R  *  S  C  *  L  S   : A  I  G  R  W  A  G  K  K  T  P  G  Y  *  S  T  G  K  *  S  D  N  I  V  Y  W  K  D  S  T  W  I  L  *  E  *  N  G  R :   F  L  *  A  I  W  Y  N  *  E  A  *  T  C  K  E  *  K   : D  G  K  I  K  A  F  W  L  H  R  I  *  V  P  *   : G  C  *  S  G  C  G  Y  H  A  *  L  S  I  I  *  A  L  V  A  S  S  S  Y  S  S  *  A  C  S  S  Q  I  :  V  E  R  C  E  P  L  V  Q  T  V  G  L  G  *  N  *  K  E  A  S  G  Q   : G  K  N  I  G  R  A  *  *  V  G  W  R  N  S  K  T  *  Q  K  E  A  K  E  D  R  G  S  W  D  *  L  R  V  P  R  N   : G  G  C  N  S  G  C  T  K  E  D  Q  V  H  *  L  D  L  Y  K  Y  S  S  *  T  K  *  Y  L  W   </first_frame>
            <second_frame>  P  L  S  A  L  L  L  L  Y  I  F  F  R  R  P  A  A  P  S  S  A  S  *  I  L  :  I  V  L  T  E  M  G  A  K  G  R  K  K  S  I  T  K  K  L  K  K  G  A  N  E  F  S  A  S  S  V  S  K  D  K  A  A  D  F  L  :  P  L  E  G  G  P  A  R  K  L  P  D  T  E  V  R  E  S  K  A  T  I  L  Y  I  G  R  I  P  H  G  F  Y  E  N  E  M  E   : G  F  F  K  Q  F  G  T  I  K  R  L  R  L  A  R  N  K  K  :  T  G  K  S  K  H  F  G  F  I  E  F  E  S  P  E  :  V  A  K  V  V  A  D  T  M  H  N  Y  L  L  F  E  H  L  L  Q  V  R  L  I  P  P  E  H  V  H  P  R  L :   W  K  G  V  N  R  W  Y  K  P  L  D  W  V  K  I  E  R  K  R  Q  D  K  :  E  R  T  L  E  E  H  N  K  L  V  G  E  I  L  K  R  D  K  K  R  R  K  R  I  E  A  A  G  I  D  Y  E  C  P  E  M  :  V  G  A  I  Q  A  A  P  K  K  I  R  F  T  D  *  I  F  I  S  I  A  R  E  R  N  S  I  Y  G  </second_frame>
            <third_frame>   H  S  P  L  Y  S  S  S  I  S  F  S  G  G  R  Q  L  L  L  Q  L  R  E  F  * :   L  F  *  Q  R  W  V  P  K  G  G  R  K  A  *  L  R  S  *  R  R  V  L  T  N  S  Q  L  L  R  F  L  K  I  K  L  L  T  F  C :   H  W  K  V  G  R  Q  E  N  S  R  I  L  K  Y  G  K  V  K  R  Q  Y  C  I  L  E  G  F  H  M  D  F  M  R  M  K  W  K  :  V  S  L  S  N  L  V  Q  L  R  G  L  D  L  Q  G  I  K  R :   R  E  N  Q  S  I  L  A  S  *  N  L  S  P  L  R :   L  L  K  W  L  R  I  P  C  I  T  I  Y  Y  L  S  T  C  C  K  F  V  L  F  L  L  S  M  F  I  P  D   : C  G  K  V  *  T  A  G  T  N  R  W  T  G  L  K  L  K  G  S  V  R  T  R :   K  E  H  W  K  S  I  I  S  W  L  E  K  F  *  N  V  T  K  R  G  E  R  G  S  R  Q  L  G  L  I  T  S  A  Q  K  W :   W  V  Q  F  R  L  H  Q  R  R  S  G  S  L  I  R  S  L  *  V  *  L  V  N  E  I  V  S  M  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7830" stop="7825"/>
                    <exon start="6840" stop="6721"/>
                    <exon start="5171" stop="5057"/>
                    <exon start="4931" stop="4876"/>
                    <exon start="4014" stop="3967"/>
                    <exon start="3860" stop="3763"/>
                    <exon start="2993" stop="2924"/>
                    <exon start="2741" stop="2631"/>
                    <exon start="1886" stop="1839"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILIVLTEMGAKGRKKSITKKLKKGANEFSASSVSKDKAADFLPLEGGPARKLPDTEVRESKATILYIGRIPHGFYENEMEGFFKQFGTIKRLRLARNKKTGKSKHFGFIEFESPEVAKVVADTMHNYLLFEHLLQVRLIPPEHVHPRLWKGVNRWYKPLDWVKIERKRQDKERTLEEHNKLVGEILKRDKKRRKRIEAAGIDYECPEMVGAIQAAPKKIRFTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="36967" PGL_stop="31016"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36967" e_stop="36922"/>
            <exon e_start="36512" e_stop="36432"/>
            <exon e_start="36350" e_stop="36185"/>
            <exon e_start="36092" e_stop="36047"/>
            <exon e_start="33833" e_stop="33753"/>
            <exon e_start="32843" e_stop="32761"/>
            <exon e_start="31820" e_stop="31777"/>
            <exon e_start="31670" e_stop="31552"/>
            <exon e_start="31097" e_stop="31016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.799" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="1.000" e_score="0.951"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="0.970"/>
          <exon-intron don_prob="0.162" acc_prob="0.976" e_score="0.957"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="0.988"/>
          <exon-intron don_prob="0.901" acc_prob="0.968" e_score="0.976"/>
          <exon-intron don_prob="0.727" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.958"/>
          <exon-only e_score="0.817"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36967" e_stop="36922" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.799" acc_prob="0.984">
            <gDNA_intron_boundary i_start="36921" i_stop="36513" i_length="409"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="36512" e_stop="36432" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36431" i_stop="36351" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="36350" e_stop="36185" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36184" i_stop="36093" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.957">
            <gDNA_exon_boundary e_start="36092" e_stop="36047" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.162" acc_prob="0.976">
            <gDNA_intron_boundary i_start="36046" i_stop="33834" i_length="2213"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="33833" e_stop="33753" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="32843" e_stop="32761" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.901" acc_prob="0.968">
            <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31820" e_stop="31777" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.727" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="0.958">
            <gDNA_exon_boundary e_start="31670" e_stop="31552" e_length="119"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="31551" i_stop="31098" i_length="454"/>
          </intron>
          <exon e_serial="9" e_score="0.817">
            <gDNA_exon_boundary e_start="31097" e_stop="31016" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36967" stop="36922"/>
              <exon start="36512" stop="36432"/>
              <exon start="36350" stop="36185"/>
              <exon start="36092" stop="36047"/>
              <exon start="33833" stop="33753"/>
              <exon start="32843" stop="32761"/>
              <exon start="31820" stop="31777"/>
              <exon start="31670" stop="31552"/>
              <exon start="31097" stop="31016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGATACAAAGATTGGAACATAGGCTGTGGGATTTAGAACCACGT : GTCCAAGCACTACTTGAGGTTTTGCCCAACCGATTAACTGCAGACATATTGGAGGAACTTCGCATCAGTAAACAGAAACTA : GTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCAAATCTGTATAATTGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAG : AAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAG : ATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG : TTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAG : GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG : TTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAG : GTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGC</gDNA_template>
            <first_frame> T  D  T  K  I  G  T  *  A  V  G  F  R  T  T   : C  P  S  T  T  *  G  F  A  Q  P  I  N  C  R  H  I  G  G  T  S  H  Q  *  T  E  T   : S  G  I  G  F  Q  G  R  G  S  *  A  N  A  T  *  Y  S  R  G  Y  S  *  N  T  S  N  L  Y  N  W  E  K  L  C  T  *  E  R  K  R  *  D  R  V  L  G  A  P  R  *  G  H  C  R  R :   R  R  G  R  N  *  N  A  F  G  E  L  S  S  E  :  M  *  I  L  P  W  S  S  *  K  A  P  *  F  C  K  R  N  G  R  L  N  C  C  K  L  E  :  F  S  K  A  *  G  E  Q  I  *  V  D  S  T  G  W  N  I  L  C  C  C  W  C  S  G  S  R :   Y  I  W  H  E  L  K  I  L  S  R  G  T  C   : V  C  I  L  A  Y  N  S  R  N  N  C  W  G  C  S  G  L  L  S  H  V  L  V  S  Q  N  E  E  N  T  V  N  N  A  *  F  H  N  Q  :  V  M  *  I  F  N  Q  D  *  A  F  N  C  S  G  C  P  K  R  C  R  I  Y  *  H  I  L  </first_frame>
            <second_frame>  R  I  Q  R  L  E  H  R  L  W  D  L  E  P  R  :  V  Q  A  L  L  E  V  L  P  N  R  L  T  A  D  I  L  E  E  L  R  I  S  K  Q  K  L  :  V  E  L  G  S  R  A  G  A  L  K  Q  M  L  L  D  I  L  E  D  T  H  E  I  R  Q  I  C  I  I  G  R  N  C  V  L  K  K  E  N  D  E  I  E  C  S  V  P  L  D  K  D  I  A  E   : E  E  E  E  E  I  E  M  L  L  E  N  Y  L  Q  R :   C  E  S  C  H  G  Q  A  E  R  L  L  D  S  A  K  E  M  E  D  S  I  A  V  N  L  S :   S  R  R  L  E  V  S  R  F  E  L  I  L  Q  V  G  T  F  C  V  A  V  G  A  L  V  A   : G  I  F  G  M  N  L  R  S  Y  L  E  E  H  V  :  F  A  F  W  L  T  T  A  G  I  I  V  G  A  V  L  A  F  Y  L  M  Y  W  Y  L  R  T  R  K  I  L  *  T  T  P  D  S  T  I  R :   *  C  K  S  L  T  K  I  E  L  S  T  A  V  G  A  Q  K  D  A  A  Y  T  S  I  F  C </second_frame>
            <third_frame>   G  Y  K  D  W  N  I  G  C  G  I  *  N  H  V :   S  K  H  Y  L  R  F  C  P  T  D  *  L  Q  T  Y  W  R  N  F  A  S  V  N  R  N  * :   W  N  W  V  P  G  Q  G  L  L  S  K  C  Y  L  I  F  *  R  I  L  M  K  Y  V  K  S  V  *  L  G  E  I  V  Y  L  R  K  K  T  M  R  *  S  A  R  C  P  *  I  R  T  L  Q  K  :  K  K  R  K  K  L  K  C  F  W  R  I  I  F  R   : D  V  N  L  A  M  V  K  L  K  G  S  L  I  L  Q  K  K  W  K  T  Q  L  L  *  T  *   : V  L  E  G  L  R  *  A  D  L  S  *  F  Y  R  L  E  H  F  V  L  L  L  V  L  W  *  Q  :  V  Y  L  A  *  T  *  D  P  I  *  R  N  M  C :   L  H  S  G  L  Q  Q  Q  E  *  L  L  G  L  F  W  P  F  I  S  C  T  G  I  S  E  R  G  K  Y  C  K  Q  R  L  I  P  Q  S   : G  D  V  N  L  *  P  R  L  S  F  Q  L  Q  W  V  P  K  K  M  P  H  I  L  A  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36966" stop="36922"/>
                    <exon start="36512" stop="36432"/>
                    <exon start="36350" stop="36185"/>
                    <exon start="36092" stop="36047"/>
                    <exon start="33833" stop="33753"/>
                    <exon start="32843" stop="32761"/>
                    <exon start="31820" stop="31777"/>
                    <exon start="31670" stop="31575"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIQRLEHRLWDLEPRVQALLEVLPNRLTADILEELRISKQKLVELGSRAGALKQMLLDILEDTHEIRQICIIGRNCVLKKENDEIECSVPLDKDIAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRFELILQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVLAFYLMYWYLRTRKIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 13 chains have been computed
$ 
$ memory statistics:
$ 4816 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2408 bytes was the average size of a spliced alignment
$ 7216 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3608 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 06:10:04
-->
