<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:33:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344586" ref_strand="+" ref_description="SGN-U344586        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttgtccttgcagtggtgagatcgaaccacgtcgctagcaaggacatgggcatcgatcttgagtgttcatctttttccgattaagtccagatttttcaggaaaaggatcttatccagaagagggaagaatttttgaatggtgatggaaattctcagttctacccttttctcctcctttccaaaccctaatttccagctatttaagcggagatttctttcattgtgaaagagagaaggagaggggaagaaaaaagggtggggtttcttaaagattttcagggaaaacagagaaaattacataaaaaaaaaagaaatttctgaaaggaattataactagatatatagcgaaaagaaatcgaaagatcttagagaaattagtggggagtcgaagctttggttcagagccttcacttagtccctctgcttgcgaaaatcttttggagttgtcggaagtcgtctcaagcttgctactgtcccatttcgctgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="+" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="1387" stop="2478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1687" g_stop="2178" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="+" ref_id="SGN-U344586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1687" e_stop="2178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCCTTGCAGTGGTGAGATCGAACCACGTCGCTAGCAAGGACATGGGCATCGATCTTGAGTGTTCATCTTTTTCCGATTAAGTCCAGATTTTTCAGGAAAAGGATCTTATCCAGAAGAGGGAAGAATTTTTGAATGGTGATGGAAATTCTCAGTTCTACCCTTTTCTCCTCCTTTCCAAACCCTAATTTCCAGCTATTTAAGCGGAGATTTCTTTCATTGTGAAAGAGAGAAGGAGAGGGGAAGAAAAAAGGGTGGGGTTTCTTAAAGATTTTCAGGGAAAACAGAGAAAATTACATAAAAAAAAAAGAAATTTCTGAAAGGAATTATAACTAGATATATAGCGAAAAGAAATCGAAAGATCTTAGAGAAATTAGTGGGGAGTCGAAGCTTTGGTTCAGAGCCTTCACTTAGTCCCTCTGCTTGCGAAAATCTTTTGGAGTTGTCGGAAGTCGTCTCAAGCTTGCTACTGTCCCATTTCGCTGCACTC</genome_strand>
        <mrna_strand>TTTTGTCCTTGCAGTGGTGAGATCGAACCACGTCGCTAGCAAGGACATGGGCATCGATCTTGAGTGTTCATCTTTTTCCGATTAAGTCCAGATTTTTCAGGAAAAGGATCTTATCCAGAAGAGGGAAGAATTTTTGAATGGTGATGGAAATTCTCAGTTCTACCCTTTTCTCCTCCTTTCCAAACCCTAATTTCCAGCTATTTAAGCGGAGATTTCTTTCATTGTGAAAGAGAGAAGGAGAGGGGAAGAAAAAAGGGTGGGGTTTCTTAAAGATTTTCAGGGAAAACAGAGAAAATTACATAAAAAAAAAAGAAATTTCTGAAAGGAATTATAACTAGATATATAGCGAAAAGAAATCGAAAGATCTTAGAGAAATTAGTGGGGAGTCGAAGCTTTGGTTCAGAGCCTTCACTTAGTCCCTCTGCTTGCGAAAATCTTTTGGAGTTGTCGGAAGTCGTCTCAAGCTTGCTACTGTCCCATTTCGCTGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336626" ref_strand="+" ref_description="SGN-U336626        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gagtttataccttaaagtttctctactttattttgaatccagctcagcataaactggtttcaaccatctgactcttctataaagcgaagtgccattcaaagactgataagttatctcctcaagaatctctcttgaaaactctccctcgtgtgagtaatagttgctatcctgaaggtggtctcaagacaagcaatgatgatgaaaatgctttggaattagtgtctgatctacttggttcatcaaagagttcggagaatttaccgcgttctcaagcgattgagataaacccatttcctacttcctctctgaggggtgtttgtgctaatcattcaggctttggtttaaatgatccttttagtctgaatctgatgaagaacctttgcttgacatgggttttggtcacacagcatcttttaacgaattcaggagttcattaccgccaatacaggtatgtcgttatttattctcaataaataaaggtatgttgtatatatcgccaactaggttcaatagttcgcaaattggtagagacacaaacatgaagataagataaatttcaacaaactaatttcactgtcttctagcagcagtatattgaaaattaatgtaataacataaagtttgctggacactccatttagacttaatttccttttggccaattgggaagatttgacacttattatgtactaatattttgaaaaaatgctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="+" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="3243" stop="4556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3543" g_stop="4256" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="+" ref_id="SGN-U336626" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3543" e_stop="4256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTATACCTTAAAGTTTCTCTACTTTATTTTGAATCCAGCTCAGCATAAACTGGTTTCAACCATCTGACTCTTCTATAAAGCGAAGTGCCATTCAAAGACTGATAAGTTATCTCCTCAAGAATCTCTCTTGAAAACTCTCCCTCGTGTGAGTAATAGTTGCTATCCTGAAGGTGGTCTCAAGACAAGCAATGATGATGAAAATGCTTTGGAATTAGTGTCTGATCTACTTGGTTCATCAAAGAGTTCGGAGAATTTACCGCGTTCTCAAGCGATTGAGATAAACCCATTTCCTACTTCCTCTCTGAGGGGTGTTTGTGCTAATCATTCAGGCTTTGGTTTAAATGATCCTTTTAGTCTGAATCTGATGAAGAACCTTTGCTTGACATGGGTTTTGGTCACACAGCATCTTTTAACGAATTCAGGAGTTCATTACCGCCAATACAGGTATGTCGTTATTTATTCTCAATAAATAAAGGTATGTTGTATATATCGCCAACTAGGTTCAATAGTTCGCAAATTGGTAGAGACACAAACATGAAGATAAGATAAATTTCAACAAACTAATTTCACTGTCTTCTAGCAGCAGTATATTGAAAATTAATGTAATAACATAAAGTTTGCTGGACACTCCATTTAGACTTAATTTCCTTTTGGCCAATTGGGAAGATTTGACACTTATTATGTACTAATATTTTGTAAAAATGCTTTCT</genome_strand>
        <mrna_strand>GAGTTTATACCTTAAAGTTTCTCTACTTTATTTTGAATCCAGCTCAGCATAAACTGGTTTCAACCATCTGACTCTTCTATAAAGCGAAGTGCCATTCAAAGACTGATAAGTTATCTCCTCAAGAATCTCTCTTGAAAACTCTCCCTCGTGTGAGTAATAGTTGCTATCCTGAAGGTGGTCTCAAGACAAGCAATGATGATGAAAATGCTTTGGAATTAGTGTCTGATCTACTTGGTTCATCAAAGAGTTCGGAGAATTTACCGCGTTCTCAAGCGATTGAGATAAACCCATTTCCTACTTCCTCTCTGAGGGGTGTTTGTGCTAATCATTCAGGCTTTGGTTTAAATGATCCTTTTAGTCTGAATCTGATGAAGAACCTTTGCTTGACATGGGTTTTGGTCACACAGCATCTTTTAACGAATTCAGGAGTTCATTACCGCCAATACAGGTATGTCGTTATTTATTCTCAATAAATAAAGGTATGTTGTATATATCGCCAACTAGGTTCAATAGTTCGCAAATTGGTAGAGACACAAACATGAAGATAAGATAAATTTCAACAAACTAATTTCACTGTCTTCTAGCAGCAGTATATTGAAAATTAATGTAATAACATAAAGTTTGCTGGACACTCCATTTAGACTTAATTTCCTTTTGGCCAATTGGGAAGATTTGACACTTATTATGTACTAATATTTTGAAAAAATGCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318178" ref_strand="+" ref_description="SGN-U318178        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic translation initiation factor 3 subunit 2 / TGF-beta receptor interacting protein 1 / eIF-3 beta / eIF3i / TRIP-1 (TIF3I1), identical to eukaryotic translation initiation factor 3 subunit 2 (SP:Q38884) {Arabidopsis thaliana}; contains Pfam PF00400: WD domain, G-beta repeat (5 copies) | chr2:19010517-19012608 REVERSE | Aliases: None(evalue: 6e-161, score=563) genbank/nr: gi|13936812|gb|AAK49947.1| TGF-beta receptor-interacting protein 1 [Phaseolus vulgaris](evalue: 4e-169, score=597)">
      <seq>ccgccttcgtctctctccatctttcctcagcggcgaacttactccggcgacgaacaacaatctcactgagagaatcactccggcgaccgactacaaacaacgatgaggccaatattgatgaagggccatgaaaggccgttaacttttctaaagtacaacagagatggagatctgctcttctcttgcgctaaggaccatacccctaccgtttggtttgccgataacggcgagcgcctcggcacttaccgtggccataacggtgccgtttggtgctgtgacgtttctcgggattcgtccaggctaataactggaagtgcggatcagactgcaatgttgtgggatgtccaaactggtgcccagctgcacacgttcacctttgactcccctgctaggtctgttgatttttcagttggcgataaactcgcagtgatcaccactgatccttttatgggactgacatctgctatccatatcaaaaatatcagcaaagatcccagtgaacaaatgagtgagtcggtgctcgtcttaaagggtccccagggaagaatcaacagagctgtgtggggacccctgaataaaacaattataagtgctggtgaagatgctgtaatacgtatctgggatgctgagactggaaaggtactgaaggagtctgacaaagaaatcggtcataaaaagggtattacatcgctacaaaaatcagtggatggttcgcacttcattactggttctcttgataaatctgcaaagctctgggacatcagaagtttgacacttatcaagaactatacgaccgaacgacccgtgaatgctgtcacaatgtcgccgcttcttaatcatgtggttctgggaggtggtcaagacgcttcagctgtcaccactactgaccatcgtgctggaaagtttgaggccaagttctatgacaagattcttactgaagaaataggaggtgtcaaagggcattttggaccaataaatgctttggctttcaatcctgatgggaaaagttttgcaagtggtggtgaagatggatatgtgagattgcatcattttgaccaggattacttcaacatcaggatttagattttgataggatcaggttttgcaagttttgttacttttcggtgttcagtagaaaaggaggataattatgtctttcctgttatctccattgaattttttgtatgcttttattgttgcaacctatgttcatcgcacgagaggaactaacattttatttctggacaagttgagcaaaacatatttactggatatttttagggcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="13045" stop="26"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12745" g_stop="12460" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11368" g_stop="11153" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="502" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9438" g_stop="9311" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="630" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9040" g_stop="8921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="750" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8753" g_stop="8664" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="840" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8663" i_stop="8055" i_length="609">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8054" g_stop="7968" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="841" r_stop="927" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7967" i_stop="7847" i_length="121">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7846" g_stop="7767" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="928" r_stop="1007" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="7766" i_stop="6918" i_length="849">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="6917" g_stop="6644" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1008" r_stop="1281" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="6643" i_stop="6436" i_length="208">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.104" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="6435" g_stop="6417" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1282" r_stop="1300" r_length="19" r_score="0.579"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-U318178" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12745" e_stop="12460"/>
          <exon e_start="11368" e_stop="11153"/>
          <exon e_start="9438" e_stop="9311"/>
          <exon e_start="9040" e_stop="8921"/>
          <exon e_start="8753" e_stop="8664"/>
          <exon e_start="8054" e_stop="7968"/>
          <exon e_start="7846" e_stop="7767"/>
          <exon e_start="6917" e_stop="6644"/>
          <exon e_start="6435" e_stop="6417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCTTCGTCTCTCTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTCGTAACTACTTCTTCTTCTCTCATACTATTGATATACTGAACTGAGCTGATATTTGTTATTAACACGATGAATGCTTGCCGTTTTTGTTTGTTTATTAGCCTACAGTGAAGCTTTGCTTACTTAAATAAGCTAATTTTCGGATAATTAATCTTCGTCTCTAGGGCTTTTGGTGTAGTAATAGTAATAAGAGTAATGGTGCGGATTTGGTGCACTTTCCGAACGAAATTCGAAGAATTTGAATCGATTAATTGCCTAGTCTATGGCTAAAGTTTGAGGCTACAAGTAACATCTCAAGATTCTATTTCAGTTACTGCTGTTTGCACCTGGATAAAAGTATCTAATCAAATTTGTAGACAATTGTTGATTAAAATCCCCAACACAACATACCTATTATAGTCCAACAAGTTGATTATCTAGTTATTTAACCATGATTTTGTTCATGATCAGTAAGTTCTTTTTAAATCAGGTGAAATAAACGAAGAGCATTAACGGCTATTCTGGTTTGATGGTTGACCTGCTTGTAAAAGAAACTGATATGGTTGCAGTTTTGCTATCACATGTTTAATTTACCTCTAGCTAATATTGTTTGTCATACTGATTTGCTATAAAACAAATCACTGATTTTTCAGATGAACTTGGTTGTTTTGATGGGTTAAATTTGTGAAGGATGATTTTTCATCCTCTATCTTGTACTTATTTCGTTACCCAAATAGTCTTTTGCTTAAAAATTGTAGAACTTTCATTCACAATCTTCTTACTACTCCCCTTTCTTTCTCTTCATATTTCATCAATCTATGTTATTGGAATTTCTGTTGTTCTCTTTATGTATTATGTCCACTTTGGCTAGTGAAAATTGGATGTAGTAAAGTAGTTATATCTCATTGGTCTTGTTTTTACCTTACAAGGGCTTTGAGGTCCAATACTTGCTGGCATGTTTCTTTTTTCTAAATAAAAGTTTAATGAAAACTGGTAGTCACAGTACGAGAGACCAAGTGCTTTTTTTTTTTGTTCGTATCATGTATGGTAAAGTGTATAATACTATTGAGAAATGGACTGTCTGTGGTTGTTGACTTGTTGATTGTTTGTTAAAGGGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAACGTAAGTTTCTGGAACTCTAAGGTTGATCTTCTGTTGTGTTGTCTTGTTTAATTGTTGTTTTTTAACAATTAATTGTTGGGTTGTATTTCTGTTTGTGAAGTAAATATTGCCTTTGTGTACTCTTTCCTTTTAAATTGCGAACAATGAATTGGATTATTGTGAAAGCATCAAATAAGTTCCTTTTATGAGCTTTCAAGTATCTTGTGACAAGCTTCATGTCTCCAGTGTAGCTATTCTTAAGCCCACTGTGTTTCCTTTTCAGAGATGTGAATATTGGACTCTTTATGACCTCAAGTCAGAGCTATACAGATGCATTTTATTTGATTATGATCATATTAGCACATAGTTGGTTTTTAAATGACTTGGATATATCGTGAATTAATTTCTCAAGCTACCAATAAAGTAGCTATGATGGTTTTGCTGTATTCTTAATTAGTTATATTATGATTTGCTATGATTGACAATTTGACATCATTTATCAGATGTTTGTCTGTTCTGTCTTTGTGCTGATATTTTAGTTGTTGAGGCCGTTCCTGGTATGTCTGTGGTGGTTAGTATCATTGAAGAAACCTGTCATTTAAATATCAGCATATGAATAATTGTCTAAATATGTGGAGTGAAGGGACTGTTTCTTTGCATTCCGACTTACCAACTCAGGCCACCCAATTGTATATATGTCTGCACTGGCCCATGTTTTCAAACTGATCAGAATGGATCCCTCCTGGTACTGATCCTCCATCGGTAATAACAATACCCAACTTCCATGCTGGCACCTATGCTATCCACCAACACTTGCCAAAACCAACATTCATGCAGAAACCCAACATATAATTTACTCTCTATGATAAGTACTACAACCAGAATAGTGGAGCAAAACCATGTCCTGTCACTAGGAGTGTTCATGTTTATCAAGTTCGGAACTCCTCTATCACCGGCCACTTAGCATGATGCACTTGGGTATGTAAAGTGAATTTGTTTATGCATGTTGTAAGTTAACAGGCGACAGCTTACTCCCTAACTTCACCACAAAGGAGCTTAAAGGAACCAGTCCTGTTACAATCACATGTCCTTTAACTATAGAGTTACTAGTGCTACTTCTGAGTTAATTGATAATTCACTTTGATATGGAGCTTGGTTATGGGGTCTGGCGGCGAAGCAGATGATTTCTATCCCCCCCCCCCCCCCACTCTTTTTAAGTTCAGTTACCAAAGAAAAAATTGTTGTAGTCATATTATACTTCCCCTTTTGTTTCCTTTAAAGTCACATATCGTTAATAATTATCTTATTACTTTATCCATTATCCTTAATTCTATGTAAACCAGAACTTGAGTATTGGAAAAAAATGTACTGTAGACTATATCAAAAAGCAAAGATGACCACCATTAAAAACATGTAGGATTTATGTGCAGAAAATGGAAGGGTCTTGCTTTCTGTTCAATTATACAAGATTGGTAAAGGTATATAGCTTTAGGGAATATTTGTTGTCAAGAGTTAAGCCTAATATGTTTCCAGAGTTGTCACATCTAACACATTGAATATGCTTTGGAATTTGAGACGAAGGTATATGCCTTGTATAGTTTGTTATTGCTTCTCTGGTGGTTGCTGTCTTATACTAATTTCAAACGAGCCTATCTTCCATTATTTTGGGCACTTTCTGACTCTCATCTCATGATCTTGACATTCACTGTATCTAATAATAATCTTCTTATTTTAGAAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAGGTACGTTAGTGTGTTTCAGCTTCATGGAAAATGTGCTGTCAATATGTCAAAGTTCGATAATATTTTGGGTTATTACTCTAGATACTTTATTTTATTATTATGAACAGTTTGGTGATTTATCAGGTCGCTTAGTTTTTGCATTATTTCACATCGCAGTATCTGCTTTGTTGTTTGCTTTGTCTTCCTTTCTTAAATATTAATTAGTTTTAAGATAGTTTTCCCTGTTCTTCGAAGCTAGTGTAATGTATTGACGGTCTTCCGAATTTGTAGACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAGGTAGCTCCTCATAGCCCTTGGAAATATGGCCATTGTTTCTTTATAAGTTCTTGCAACTACCTAGCAATATTTCATTTTGGATTTTCAGCTGCATATGTCCATATCCACTTTGTTTTTTTTTTCTTTTTAGAGTTCCTCTTTATTTCTAATCTCTGTCGATTTTCCAGCTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCATGTATGTATTGACACTCATTAACTGATACATTGAATGGTTCTGATAGATAGCTTTTTAATCTGTTATCTTCTCCTATGTATTTTTCTTTTTTATTTTTGGTGGGGGTGGGGGGTGGTTGAAACAAGTTAAAATTTTTGAAATGTTCACGAAGTTACCTCCTTGAAGATAATAATGTCTTCGACTTGCAGCTCTTTTATGTTAATTATCAGTGTCCTGAATAAGATCTTTTAATCTCAAAAAGATATTTTAATGGGGAGTTACAAGTCCACTGTTACAAGAAATTGATTAAACCGTTGTACTGTGGTAGATCTTTAATCATTCGCAAGATAAGGGAACTTAATGCTCACTGTAACCAACATTGCTCATTACTGTTCAACATTTGATAAGGACACTTGAACTTAAATATCTTATGAAACAAAAGAGATGTTCTTCAAGAGTGTCTCATTACTGATTAAGAAAATAACTAAAAAGGACCGGATATGTGTTACTTTGAATCGGTTTGATGTTGCTAGTCTAAAGATTTGTTCTTCTGCAAGCAAAGTTTCTCCGAAGGATTCTGTAATGTTTCTTGATGTATCTCTCTAATCTAATGCTGCTCTTGGTCAATAGGTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAGGTAAGTGGATATATTTTGGTGTTAGGAATAATCTTCCCCCATCCTGAAAAAGAGAAAAAATGGATCTGATTTGGTTTCATTACATTTCGGAGTGTGTAATTTGTATCTGGATATGCATCAGATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAGGTAATCATTCCACATTCCTGCCATCTCATATGCGGATGTCATGTACTTGTGCCATTATTGAAACTTGACTTTGTTTTCGTGTGGGCTCACGAGTTTTAGATTTTAATCCAATAATTTATTCTAAAAATTGTGTTCCTTTTCTTTATAGGTTCTAAGAAAACTCAACTTTTCTTGTTTTCTCATCTCGTTTTTGTAGTAGTACTACTTCCTCCGTGTGACAAAGATGAAGACACTCTTTATTAACAATTACATTTTATAAGAATGATAGTGAATCCTAATCCGTTTTTAGTCACACAAGTATAGTACTACTACTACTACCTCCATATGACAAAGATGAAGCTGTTCTTTATGAACAATTAAGTTTATAAGAATCATAGTGGTTCCTAATCAGTTTTTTTAGTCACATTGTTATTAACAATCGATGATAAAAGGTTCCTGCTTAAGAAAATGGTGGACTTATTTTAGGACAACTCAGATAGAAAATTAAGGCAACTGTTTTTGGATGGGTAGAGTGAAATTAGTTTGTTGGAATTTTTTGAACATGCAATTTTGTGCTAGTGTTGTATGCCCTTGATGGTTCTCTTTACTTCCTCTCCAAGTTTGTAGTAAGTTTTGGATCCTTCCAACTTAAAGGTGAAAACAGGAAAAGAAACATCATCTTTGAGTTATTTGAAGTTTTACATATTTAGTGTGTACTTGAGCAAAGGGAGAGTTTTTCGATCACAATGAATAACAAATTTCAGTAATGCTGATCATTTTCCAATTTGGACATGTTTAAAAAGCTGATTTGTTGGCGAAGTTAATTGGTTATTCCATCTCGAGTGTTGTGTGAATGTTTGATTTTTGCAGTTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACTGGATATTTTTAGGTGCAATTTTTTTCAAGCGTTTACTCTAGCATGATCAATTTATTCAAAAAGCAAAGTATATATCTTACCTTTTGATTGATCCTCTGCTCCTTGAAGCTTGACCATTGTTTCATAGCGCATTAAGTAAATGGTTTATCGGCAAATTTATTAGTAACTAAAACTCTTTTCTTTATATTATCACAATGGGGAAAACAAAATTAAATATTAGGTAACATATAAAGTAGAAA</genome_strand>
        <mrna_strand>CCGCCTTCGTCTCTCTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG..............................................................................................................................................................................................................................................................................ACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG.......................................................................................................................................................................CTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAG.........................................................................................................................ATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACTGGATATTTTTAG................................................................................................................................................................................................................GGCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340649" ref_strand="+" ref_description="SGN-U340649        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | forkhead-associated domain-containing protein / FHA domain-containing protein | chr1:12536475-12541869 FORWARD | Aliases: None(evalue: 2e-46, score=142) genbank/nr: hypothetical(evalue: 1e-44, score=142)">
      <seq>tccttgttgacagtcataagagaattggattgcatgaagaggcgtgctagtctatttagaaggacaactgaggtatctgcagcattagaatggatagaagactgcatgataaatgcaaaggcatggattcatgtacagagttgtgcagaggaaacaagaagcagtggcaccaacccctcctgctacagctccattgtctttgttcagtgaggagaatggcatgtttcctgttggctcacatcaattttctccacatagtggtctaatggattttgcctcacccacagcagaagatcatatccttgaatatgccctcttcttcaaaagaaccaacagaaacggacaactcgtccttcttagcaacgatcttaccatgaaaatcaaagccatggcagaaggtttgaactgtgagacagcagaagagttccgcgagagcttagtgaatccattctctgagagatttctttggaaggacagctctcccaggggaaggacttggtcatgtgaggatgactttgttcttagggaaacatattaccacggccctccaaagaagccatcaatgtcaggagaagctgcaaaagggttgaagctcatattgctccataattctcattntaggtgccacatcagtacagccagttgaatcagttaggtattataggctgtgtacaaccttttcttttcaattgcaacaatcatgttcaatttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="+" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="73613" stop="75001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73913" g_stop="74308" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74309" i_stop="74382" i_length="74">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74383" g_stop="74701" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="717" r_length="320" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="+" ref_id="SGN-U340649" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73913" e_stop="74308"/>
          <exon e_start="74383" e_stop="74701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGTTGACAGTCATAAGAGAATTGGATTGCATGAAGAGGCGTGCTAGTCTATTTAGAAGGACAACTGAGGTATCTGCAGCATTAGAATGGATAGAAGACTGCATGATAAATGCAAAGGCATGGATTCATGTACAGAGTTGTGCAGAGGAAACAAG-AGCAGTGGCACCAACCCCTCCTGCTACAGCTCCATTGTCTTTGTTCAGTGAGGAGAATGGCATGTTTCCTGTTGGCTCACATCAATTTTCTCCACATAGTGGTCTAATGGATTTTGCCTCACCCACAGCAGAAGATCATATCCTTGAATATGCCCTCTTCTTCAAAAGAACCAACAGAAACGGACAACTCGTCCTTCTTAGCAACGATCTTACCATGAAAATCAAAGCCATGGCAGAAGTAAGACCATAAAAAAACCACCATCCAAGCTGTACATGGTGAATTTTCATTCTAACATTTATTTACACTTGCAGGGTTTGAACTGTGAGACAGCAGAAGAGTTCCGCGAGAGCTTAGTGAATCCATTCTCTGAGAGATTTCTTTGGAAGGACAGCTCTCCCAGGGGAAGGACTTGGTCATGTGAGGATGACTTTGTTCTTAGGGAAACATATTACCACGGCCCTCCAAAGAAGCCATCAATGTCAGGAGAAGCTGCAAAAGGGTTGAAGCTCATATTGCTCCATAATTCTCATTTTAGGTGCCACATCAGTACAGCCAGTTGAATCAGTTAGGTATTATA-GCTGTGTACAACCTTTTCTTTTCAATTGCAACAATCATGTTCAATTTCTTTTG</genome_strand>
        <mrna_strand>TCCTTGTTGACAGTCATAAGAGAATTGGATTGCATGAAGAGGCGTGCTAGTCTATTTAGAAGGACAACTGAGGTATCTGCAGCATTAGAATGGATAGAAGACTGCATGATAAATGCAAAGGCATGGATTCATGTACAGAGTTGTGCAGAGGAAACAAGAAGCAGTGGCACCAACCCCTCCTGCTACAGCTCCATTGTCTTTGTTCAGTGAGGAGAATGGCATGTTTCCTGTTGGCTCACATCAATTTTCTCCACATAGTGGTCTAATGGATTTTGCCTCACCCACAGCAGAAGATCATATCCTTGAATATGCCCTCTTCTTCAAAAGAACCAACAGAAACGGACAACTCGTCCTTCTTAGCAACGATCTTACCATGAAAATCAAAGCCATGGCAGAA..........................................................................GGTTTGAACTGTGAGACAGCAGAAGAGTTCCGCGAGAGCTTAGTGAATCCATTCTCTGAGAGATTTCTTTGGAAGGACAGCTCTCCCAGGGGAAGGACTTGGTCATGTGAGGATGACTTTGTTCTTAGGGAAACATATTACCACGGCCCTCCAAAGAAGCCATCAATGTCAGGAGAAGCTGCAAAAGGGTTGAAGCTCATATTGCTCCATAATTCTCATTNTAGGTGCCACATCAGTACAGCCAGTTGAATCAGTTAGGTATTATAGGCTGTGTACAACCTTTTCTTTTCAATTGCAACAATCATGTTCAATTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333234" ref_strand="+" ref_description="SGN-U333234        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr1:12550465-12552607 FORWARD | Aliases: F7P12.7, F7P12_7(evalue: 1e-103, score=373) genbank/nr: nucleic(evalue: 7e-102, score=373)">
      <seq>agagaaccttcctcccggttcctatgagattctacagttggaaaaagaggaaatccttgcaccacacactcacttttgcacaatttgtggcaagggatttaagagggatgcgaatttgcgaatgcacatgagaggtcatggagatgagtacaagactccagcagctcttgcaaagcctcataaagaacccagttctgagccaacactcatcaaaaggtattcctgtccgtatgttggatgcaagcgcaataaggagcataaaaagtttcaacctctcaaaaccatcttatgtgtgaaaaaccattacaagagaacccactgtgagaaagcctatacttgtagtagatgtaacattaagaaattttcagtaattgctgatcttaaaacacatgaaaagcattgtggaaaggataagtggctttgttcctgtggaacaacattttcgaggaaagacaagctttttggacacatttccctttttcaaggtcatactcctgcagtttctccggatgaaactaaaggatctgctgggacatctgaccggggccaaaccggtgaagtcaccatgaaagctcgacaagaaaactataaggtaaatgcttcacatggcaatgagtttcaaaatcccggggttgtaaaagagtgtccatacaatccaagcagttatttctcacctttgaacttcgatactagcaatcttaatggatttcaagagttccctcgaccaccatttgacgagtcagatagctcattctcatttctgctgtctggatcatgtgaataccctcctcacaaggctgcaaaatttatgagttctagtgaaatggaataacatcaaccagtattcaatttgtctttggttcattgtagctatttattctattatgtcattattatattttcagagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="76276" stop="74767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75976" g_stop="75059" g_length="918"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="918" r_length="918" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-U333234" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>918</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75976" e_stop="75059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAACCTTCCTCCCGGTTCCTATGAGATTCTACAGTTGGAAAAAGAGGAAATCCTTGCACCACACACTCACTTTTGCACAATTTGTGGCAAGGGATTTAAGAGGGATGCGAATTTGCGAATGCACATGAGAGGTCATGGAGATGAGTACAAGACTCCAGCAGCTCTTGCAAAGCCTCATAAAGAACCCAGTTCTGAGCCAACACTCATCAAAAGGTATTCCTGTCCGTATGTTGGATGCAAGCGCAATAAGGAGCATAAAAAGTTTCAACCTCTCAAAACCATCTTATGTGTGAAAAACCATTACAAGAGAACCCACTGTGAGAAAGCCTATACTTGCAGTAGATGTAACATTAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGGGGCCAAACCGGTGAAGTCACCATGAAAGCTCGACAAGAAAACTATAAGGTAAATGCTTCACTTGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTCGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCATTTCTGCTGTCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATTTATGAGTTCTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATTTATTCTATTATGTCATTATTATATTTTCAGAGTAACTGTGTTT</genome_strand>
        <mrna_strand>AGAGAACCTTCCTCCCGGTTCCTATGAGATTCTACAGTTGGAAAAAGAGGAAATCCTTGCACCACACACTCACTTTTGCACAATTTGTGGCAAGGGATTTAAGAGGGATGCGAATTTGCGAATGCACATGAGAGGTCATGGAGATGAGTACAAGACTCCAGCAGCTCTTGCAAAGCCTCATAAAGAACCCAGTTCTGAGCCAACACTCATCAAAAGGTATTCCTGTCCGTATGTTGGATGCAAGCGCAATAAGGAGCATAAAAAGTTTCAACCTCTCAAAACCATCTTATGTGTGAAAAACCATTACAAGAGAACCCACTGTGAGAAAGCCTATACTTGTAGTAGATGTAACATTAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGGGGCCAAACCGGTGAAGTCACCATGAAAGCTCGACAAGAAAACTATAAGGTAAATGCTTCACATGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTCGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCATTTCTGCTGTCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATTTATGAGTTCTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATTTATTCTATTATGTCATTATTATATTTTCAGAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327983" ref_strand="+" ref_description="SGN-U327983        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr1:12550465-12552607 FORWARD | Aliases: F7P12.7, F7P12_7(evalue: 2e-23, score=105) genbank/nr: gi|21593564|gb|AAM65531.1| zinc finger protein, putative [Arabidopsis thaliana](evalue: 1e-21, score=105)">
      <seq>ttcccaatagtaagaaagaagaaccattggctgaccttcaatctggaagcatattcagatatggatcctgacgacagtctaagtgaagatccttggataaagtcttcttcgtctggcaacgaattgctgaaaattatgccctcagataaccattcatttaccaatttaaatctgcatgagcagaagtgggaaggttcctcttatttggatcaagaaatcaggattgagcaacagtttactggatttgctaaaccaaaacacacatctgagatggatcaacaggggaatcaaaatcatgatacgaccagaatacatgactgggatccaagagctttgctaaacaacctttcgtttctcgaacaaaagattcatcagctccaggagctggtgcatttgattgttgggcggagaggtcaagatgaggttcaaggaaatgaccttatagttcagcaacaacagctaatcacagctgatcttacttgtattatagtccaattgatatcacactgcaggaagtcttcttgcaactatgaagtacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="78029" stop="75897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77729" g_stop="77685" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77684" i_stop="76693" i_length="992">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76692" g_stop="76197" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="542" r_length="497" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-U327983" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77729" e_stop="77685"/>
          <exon e_start="76692" e_stop="76197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCAATAGTAAGAAAGAAGAACCATTGGCTGACCTTCAATCTGGTGAGTTTTCATTATTTCTATCCTAACACTTTGTCTCTATATGGTGTGTGTATCTCTGATGACTTCTTGCTGAAAAGTTTACAACTTTTAAACTGTTTTTTCCTTTTTGTCTTTGATGAGTTGACAATAGGATGTTTTATAGAAAAAGATTGAATCTTTGATGTGCAACCTGTATTGGGGTTTTCTCAGATTTTGATGAGATTGAGATCTCCAAATTTTTAAAGAAAATTATTTTGTGGTTGAGTTTCTTTTGGGGTTGTTGGTGAAGGTGTGGATGGTCAAAAAAGACTCCCAAAATGAAATTTGGGTTTCTTTTCTTGATTTTTCTTCTGGGGATGGATTGACCTGCATAAAGGGAAAGGAAGATGAGGGGGTGGGGGCGTTGACCTAGAATTGAACCAAAGTTCCTACCAATCTTTAAACCTGAAAATCACTGGAATTTAGGTTTTTCTAAGTAAAATTTATGTGGTGTGGCCTTTTGTGTTGCATATGTATCTCAAAAGCTATGTCTTCTTACTAAATAGTCTGATGCTTGTGTTTGTGGAAGTTTACTGTGGAGGCTCAGTAGCTGGATTACATGACAACTGAATTAGAAACTAAGATAATAAAGGAATAGCTTTGAGTAGAAATATGTAATTATAGTGTGAACAATTTCTTGTTTGAAAGAATGATTTTGGTCGAACTGTACCATCCATTCTATCGCGCAGACTGTTTGTTTGCCTTGATGTAGTTATGCCGAACAGGTATGATATCATATCATATCATAAAAGCTCATCTGTTGATGTTTGTTTCTTTTTTGATTCTTTGTAAAGGTGTTGTCGAAGTACAGTACTGATAAATTTTTTTGTATAAGTATGATCAATTAATTCACATGTTAACTGAATGAATATTGTTTTCATGCTTGTTTCGTATGGACTCAATTGATTTTGGTTGAAGTGCTCTTATTTTTTCTTTGTTTTACATCTTTTCTTTGTGTACTCTTGTTACCTCAGGAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAACGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCAGGATTGAGCAACAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACAGGGGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGAGGTTCAGGGAAATGACCTTATAGTTCAGCAACAACAGTTAATCACAGCTGATCTTACTTCTATTATAGTCCAATTGATATCA-ACTGCAGGAAGTCTTCTTCCAACTATGAAGTACACTC</genome_strand>
        <mrna_strand>TTCCCAATAGTAAGAAAGAAGAACCATTGGCTGACCTTCAATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAACGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCAGGATTGAGCAACAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACAGGGGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGAGGTTCAAGGAAATGACCTTATAGTTCAGCAACAACAGCTAATCACAGCTGATCTTACTTGTATTATAGTCCAATTGATATCACACTGCAGGAAGTCTTCTTGCAACTATGAAGTACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="+" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="84809" stop="85967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85109" g_stop="85667" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85109" e_stop="85667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTATGATGATAGTATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAACGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGTTCCAGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCCCTACCATGACCACCTCTACCTCTAACATTTGGAGGTTTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCATATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGCGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCGCC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="+" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="84813" stop="86862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85113" g_stop="86562" g_length="1450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="+" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>1450</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85113" e_stop="86562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTATGATGATAGTATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAACGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGTTCCAGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCCCTACCATGACCACCTCTACCTCTAACATTTGGAGGTTTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCATATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGCGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCGCCTCCCTTTTGAAACCTCTTTGATGTCGGTGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTTTACCATGAAATCTACCACCTCTTGGAAGGATTTTGCAGTAGCCGCTATCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGGCGAATCCACTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAAAGCACAAAACTTAGCCTCATATGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAATCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACTAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGATAGTCAACCAGAAAATCATAAGCATCTTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGAATCCATACGAGGAGCCATAGTGGCTGCATGTTGCACTTCTGAAATCGGAGGTGTTGGCGCAGAAAACACTGGAGGAAAACACTAGAGGTGCCAGACCTTGATCAGAAAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGCTGGGGTGGAAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTAACCCTCTCT-TATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACT----G---------GAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCC-CTCCCTTTCTCTATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335074" ref_strand="-" ref_description="SGN-U335074        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>agtaactcaagccagtcctactacatcggaaattcagggtgagctaatgcttctaggtttgactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcgtatgtatttttagcttcttagaatactcttagtttagtaattttatgatagaggctctggtgatgatgacttccagattttggggaatgataagttttgagttatacaagttgattattgatttttattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="87623" stop="86776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87323" g_stop="87077" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="265"/>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-U335074" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335074" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87323" e_stop="87077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTA-TTTTAGCTTCTTAGAATACTCTTAGTTTAGTGATTTGATTATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGACTATTGATTTTTATTA</genome_strand>
        <mrna_strand>AGTAACTCAAGCCAGTCCTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGGTTTGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCGTATGTATTTTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTTATGATAGAGGCTCTGGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATACAAGTTGATTATTGATTTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0064J13-MXKeo/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0064J13.2" temp_strand="-" temp_description="C11HBa0064J13.2  AC171734.2 htgs_phase:3 submitted_to_sgn_as:082905.asm.C18 sequenced_by:ivf-caas upload_account_name:china11 082905.asm.assem.ace.1 from 3 to 118523">
        <position start="88306" stop="87151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88006" g_stop="87733" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87732" i_stop="87695" i_length="38">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87694" g_stop="87451" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="515" r_length="244" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0064J13.2" gen_strand="-" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0064J13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88006" e_stop="87733"/>
          <exon e_start="87694" e_stop="87451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTGCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTTCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAAGGAATCTTGAAAGATGTTAATATATTCAATTTAATGAACCGAATCCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTAATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCAC......................................GTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1687" PGL_stop="2178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1687" e_stop="2178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1687" e_stop="2178" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1687" stop="2178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGTCCTTGCAGTGGTGAGATCGAACCACGTCGCTAGCAAGGACATGGGCATCGATCTTGAGTGTTCATCTTTTTCCGATTAAGTCCAGATTTTTCAGGAAAAGGATCTTATCCAGAAGAGGGAAGAATTTTTGAATGGTGATGGAAATTCTCAGTTCTACCCTTTTCTCCTCCTTTCCAAACCCTAATTTCCAGCTATTTAAGCGGAGATTTCTTTCATTGTGAAAGAGAGAAGGAGAGGGGAAGAAAAAAGGGTGGGGTTTCTTAAAGATTTTCAGGGAAAACAGAGAAAATTACATAAAAAAAAAAGAAATTTCTGAAAGGAATTATAACTAGATATATAGCGAAAAGAAATCGAAAGATCTTAGAGAAATTAGTGGGGAGTCGAAGCTTTGGTTCAGAGCCTTCACTTAGTCCCTCTGCTTGCGAAAATCTTTTGGAGTTGTCGGAAGTCGTCTCAAGCTTGCTACTGTCCCATTTCGCTGCACTC</gDNA_template>
            <first_frame> F  C  P  C  S  G  E  I  E  P  R  R  *  Q  G  H  G  H  R  S  *  V  F  I  F  F  R  L  S  P  D  F  S  G  K  G  S  Y  P  E  E  G  R  I  F  E  W  *  W  K  F  S  V  L  P  F  S  P  P  F  Q  T  L  I  S  S  Y  L  S  G  D  F  F  H  C  E  R  E  K  E  R  G  R  K  K  G  G  V  S  *  R  F  S  G  K  T  E  K  I  T  *  K  K  K  K  F  L  K  G  I  I  T  R  Y  I  A  K  R  N  R  K  I  L  E  K  L  V  G  S  R  S  F  G  S  E  P  S  L  S  P  S  A  C  E  N  L  L  E  L  S  E  V  V  S  S  L  L  L  S  H  F  A  A  L </first_frame>
            <second_frame>  F  V  L  A  V  V  R  S  N  H  V  A  S  K  D  M  G  I  D  L  E  C  S  S  F  S  D  *  V  Q  I  F  Q  E  K  D  L  I  Q  K  R  E  E  F  L  N  G  D  G  N  S  Q  F  Y  P  F  L  L  L  S  K  P  *  F  P  A  I  *  A  E  I  S  F  I  V  K  E  R  R  R  G  E  E  K  R  V  G  F  L  K  D  F  Q  G  K  Q  R  K  L  H  K  K  K  R  N  F  *  K  E  L  *  L  D  I  *  R  K  E  I  E  R  S  *  R  N  *  W  G  V  E  A  L  V  Q  S  L  H  L  V  P  L  L  A  K  I  F  W  S  C  R  K  S  S  Q  A  C  Y  C  P  I  S  L  H   </second_frame>
            <third_frame>   L  S  L  Q  W  *  D  R  T  T  S  L  A  R  T  W  A  S  I  L  S  V  H  L  F  P  I  K  S  R  F  F  R  K  R  I  L  S  R  R  G  K  N  F  *  M  V  M  E  I  L  S  S  T  L  F  S  S  F  P  N  P  N  F  Q  L  F  K  R  R  F  L  S  L  *  K  R  E  G  E  G  K  K  K  G  W  G  F  L  K  I  F  R  E  N  R  E  N  Y  I  K  K  K  E  I  S  E  R  N  Y  N  *  I  Y  S  E  K  K  S  K  D  L  R  E  I  S  G  E  S  K  L  W  F  R  A  F  T  *  S  L  C  L  R  K  S  F  G  V  V  G  S  R  L  K  L  A  T  V  P  F  R  C  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0064J13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3543" PGL_stop="4256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3543" e_stop="4256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="3543" e_stop="4256" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3543" stop="4256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336626" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTTTATACCTTAAAGTTTCTCTACTTTATTTTGAATCCAGCTCAGCATAAACTGGTTTCAACCATCTGACTCTTCTATAAAGCGAAGTGCCATTCAAAGACTGATAAGTTATCTCCTCAAGAATCTCTCTTGAAAACTCTCCCTCGTGTGAGTAATAGTTGCTATCCTGAAGGTGGTCTCAAGACAAGCAATGATGATGAAAATGCTTTGGAATTAGTGTCTGATCTACTTGGTTCATCAAAGAGTTCGGAGAATTTACCGCGTTCTCAAGCGATTGAGATAAACCCATTTCCTACTTCCTCTCTGAGGGGTGTTTGTGCTAATCATTCAGGCTTTGGTTTAAATGATCCTTTTAGTCTGAATCTGATGAAGAACCTTTGCTTGACATGGGTTTTGGTCACACAGCATCTTTTAACGAATTCAGGAGTTCATTACCGCCAATACAGGTATGTCGTTATTTATTCTCAATAAATAAAGGTATGTTGTATATATCGCCAACTAGGTTCAATAGTTCGCAAATTGGTAGAGACACAAACATGAAGATAAGATAAATTTCAACAAACTAATTTCACTGTCTTCTAGCAGCAGTATATTGAAAATTAATGTAATAACATAAAGTTTGCTGGACACTCCATTTAGACTTAATTTCCTTTTGGCCAATTGGGAAGATTTGACACTTATTATGTACTAATATTTTGTAAAAATGCTTTCT</gDNA_template>
            <first_frame> E  F  I  P  *  S  F  S  T  L  F  *  I  Q  L  S  I  N  W  F  Q  P  S  D  S  S  I  K  R  S  A  I  Q  R  L  I  S  Y  L  L  K  N  L  S  *  K  L  S  L  V  *  V  I  V  A  I  L  K  V  V  S  R  Q  A  M  M  M  K  M  L  W  N  *  C  L  I  Y  L  V  H  Q  R  V  R  R  I  Y  R  V  L  K  R  L  R  *  T  H  F  L  L  P  L  *  G  V  F  V  L  I  I  Q  A  L  V  *  M  I  L  L  V  *  I  *  *  R  T  F  A  *  H  G  F  W  S  H  S  I  F  *  R  I  Q  E  F  I  T  A  N  T  G  M  S  L  F  I  L  N  K  *  R  Y  V  V  Y  I  A  N  *  V  Q  *  F  A  N  W  *  R  H  K  H  E  D  K  I  N  F  N  K  L  I  S  L  S  S  S  S  S  I  L  K  I  N  V  I  T  *  S  L  L  D  T  P  F  R  L  N  F  L  L  A  N  W  E  D  L  T  L  I  M  Y  *  Y  F  V  K  M  L  S </first_frame>
            <second_frame>  S  L  Y  L  K  V  S  L  L  Y  F  E  S  S  S  A  *  T  G  F  N  H  L  T  L  L  *  S  E  V  P  F  K  D  *  *  V  I  S  S  R  I  S  L  E  N  S  P  S  C  E  *  *  L  L  S  *  R  W  S  Q  D  K  Q  *  *  *  K  C  F  G  I  S  V  *  S  T  W  F  I  K  E  F  G  E  F  T  A  F  S  S  D  *  D  K  P  I  S  Y  F  L  S  E  G  C  L  C  *  S  F  R  L  W  F  K  *  S  F  *  S  E  S  D  E  E  P  L  L  D  M  G  F  G  H  T  A  S  F  N  E  F  R  S  S  L  P  P  I  Q  V  C  R  Y  L  F  S  I  N  K  G  M  L  Y  I  S  P  T  R  F  N  S  S  Q  I  G  R  D  T  N  M  K  I  R  *  I  S  T  N  *  F  H  C  L  L  A  A  V  Y  *  K  L  M  *  *  H  K  V  C  W  T  L  H  L  D  L  I  S  F  W  P  I  G  K  I  *  H  L  L  C  T  N  I  L  *  K  C  F   </second_frame>
            <third_frame>   V  Y  T  L  K  F  L  Y  F  I  L  N  P  A  Q  H  K  L  V  S  T  I  *  L  F  Y  K  A  K  C  H  S  K  T  D  K  L  S  P  Q  E  S  L  L  K  T  L  P  R  V  S  N  S  C  Y  P  E  G  G  L  K  T  S  N  D  D  E  N  A  L  E  L  V  S  D  L  L  G  S  S  K  S  S  E  N  L  P  R  S  Q  A  I  E  I  N  P  F  P  T  S  S  L  R  G  V  C  A  N  H  S  G  F  G  L  N  D  P  F  S  L  N  L  M  K  N  L  C  L  T  W  V  L  V  T  Q  H  L  L  T  N  S  G  V  H  Y  R  Q  Y  R  Y  V  V  I  Y  S  Q  *  I  K  V  C  C  I  Y  R  Q  L  G  S  I  V  R  K  L  V  E  T  Q  T  *  R  *  D  K  F  Q  Q  T  N  F  T  V  F  *  Q  Q  Y  I  E  N  *  C  N  N  I  K  F  A  G  H  S  I  *  T  *  F  P  F  G  Q  L  G  R  F  D  T  Y  Y  V  L  I  F  C  K  N  A  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3614" stop="4015"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFYKAKCHSKTDKLSPQESLLKTLPRVSNSCYPEGGLKTSNDDENALELVSDLLGSSKSSENLPRSQAIEINPFPTSSLRGVCANHSGFGLNDPFSLNLMKNLCLTWVLVTQHLLTNSGVHYRQYRYVVIYSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12745" PGL_stop="6417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12745" e_stop="12460"/>
            <exon e_start="11368" e_stop="11153"/>
            <exon e_start="9438" e_stop="9311"/>
            <exon e_start="9040" e_stop="8921"/>
            <exon e_start="8753" e_stop="8664"/>
            <exon e_start="8054" e_stop="7968"/>
            <exon e_start="7846" e_stop="7767"/>
            <exon e_start="6917" e_stop="6644"/>
            <exon e_start="6435" e_stop="6417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.104" e_score="1.000"/>
          <exon-only e_score="0.579"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="12745" e_stop="12460" e_length="286"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12459" i_stop="11369" i_length="1091"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11368" e_stop="11153" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.964">
            <gDNA_intron_boundary i_start="11152" i_stop="9439" i_length="1714"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9438" e_stop="9311" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="9310" i_stop="9041" i_length="270"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9040" e_stop="8921" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.986">
            <gDNA_intron_boundary i_start="8920" i_stop="8754" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8753" e_stop="8664" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8663" i_stop="8055" i_length="609"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8054" e_stop="7968" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="7967" i_stop="7847" i_length="121"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="7846" e_stop="7767" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7766" i_stop="6918" i_length="849"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="6917" e_stop="6644" e_length="274"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.104">
            <gDNA_intron_boundary i_start="6643" i_stop="6436" i_length="208"/>
          </intron>
          <exon e_serial="9" e_score="0.579">
            <gDNA_exon_boundary e_start="6435" e_stop="6417" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12745" stop="12460"/>
              <exon start="11368" stop="11153"/>
              <exon start="9438" stop="9311"/>
              <exon start="9040" stop="8921"/>
              <exon start="8753" stop="8664"/>
              <exon start="8054" stop="7968"/>
              <exon start="7846" stop="7767"/>
              <exon start="6917" stop="6644"/>
              <exon start="6435" stop="6417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTCTTCGTCTCTCTCCATCTTTCCTCAGCGGCGAACTTACTCCGGCGACGAACAACAATCTCACTGAGAGAATCACTCCGGCGACCGACTACAAACAACGATGAGGCCAATATTGATGAAGGGCCATGAAAGGCCGTTAACTTTTCTAAAGTACAACAGAGATGGAGATCTGCTCTTCTCTTGCGCTAAGGACCATACCCCTACCGTTTGGTTTGCCGATAACGGCGAGCGCCTCGGCACTTACCGTGGCCATAACGGTGCCGTTTGGTGCTGTGACGTTTCTC : GGGATTCGTCCAGGCTAATAACTGGAAGTGCGGATCAGACTGCAATGTTGTGGGATGTCCAAACTGGTGCCCAGCTGCACACGTTCACCTTTGACTCCCCTGCTAGGTCTGTTGATTTTTCAGTTGGCGATAAACTCGCAGTGATCACCACTGATCCTTTTATGGGACTGACATCTGCTATCCATATCAAAAATATCAGCAAAGATCCCAGTGAAC : AAATGAGTGAGTCGGTGCTCGTCTTAAAGGGTCCCCAGGGAAGAATCAACAGAGCTGTGTGGGGACCCCTGAATAAAACAATTATAAGTGCTGGTGAAGATGCTGTAATACGTATCTGGGATGCTGAG : ACTGGAAAGGTACTGAAGGAGTCTGACAAAGAAATCGGTCATAAAAAGGGTATTACATCGCTACAAAAATCAGTGGATGGTTCGCACTTCATTACTGGTTCTCTTGATAAATCTGCAAAG : CTCTGGGACATCAGAAGTTTGACACTTATCAAGAACTATACGACCGAACGACCCGTGAATGCTGTCACAATGTCGCCGCTTCTTAATCAT : GTGGTTCTGGGAGGTGGTCAAGACGCTTCAGCTGTCACCACTACTGACCATCGTGCTGGAAAGTTTGAGGCCAAGTTCTATGACAAG : ATTCTTACTGAAGAAATAGGAGGTGTCAAAGGGCATTTTGGACCAATAAATGCTTTGGCTTTCAATCCTGATGGGAAAAG : TTTTGCAAGTGGTGGTGAAGATGGATATGTGAGATTGCATCATTTTGACCAGGATTACTTCAACATCAGGATTTAGATTTTGATAGGATCAGGTTTTGCAAGTTTTGTTACTTTTCGGTGTTCAGTAGAAAAGGAGGATAATTATGTCTTTCCTGTTATCTCCATTGAATTTTTTGTATGCTTTTATTGTTGCAACCTATGTTCATCGCACGAGAGGAACTAACATTTTATTTCTGGACAAGTTGAGCAAAACATATTTACTGGATATTTTTAG : GTAACATATAAAGTAGAAA</gDNA_template>
            <first_frame> P  S  S  S  L  S  I  F  P  Q  R  R  T  Y  S  G  D  E  Q  Q  S  H  *  E  N  H  S  G  D  R  L  Q  T  T  M  R  P  I  L  M  K  G  H  E  R  P  L  T  F  L  K  Y  N  R  D  G  D  L  L  F  S  C  A  K  D  H  T  P  T  V  W  F  A  D  N  G  E  R  L  G  T  Y  R  G  H  N  G  A  V  W  C  C  D  V  S   : R  D  S  S  R  L  I  T  G  S  A  D  Q  T  A  M  L  W  D  V  Q  T  G  A  Q  L  H  T  F  T  F  D  S  P  A  R  S  V  D  F  S  V  G  D  K  L  A  V  I  T  T  D  P  F  M  G  L  T  S  A  I  H  I  K  N  I  S  K  D  P  S  E   : Q  M  S  E  S  V  L  V  L  K  G  P  Q  G  R  I  N  R  A  V  W  G  P  L  N  K  T  I  I  S  A  G  E  D  A  V  I  R  I  W  D  A  E  :  T  G  K  V  L  K  E  S  D  K  E  I  G  H  K  K  G  I  T  S  L  Q  K  S  V  D  G  S  H  F  I  T  G  S  L  D  K  S  A  K  :  L  W  D  I  R  S  L  T  L  I  K  N  Y  T  T  E  R  P  V  N  A  V  T  M  S  P  L  L  N  H  :  V  V  L  G  G  G  Q  D  A  S  A  V  T  T  T  D  H  R  A  G  K  F  E  A  K  F  Y  D  K  :  I  L  T  E  E  I  G  G  V  K  G  H  F  G  P  I  N  A  L  A  F  N  P  D  G  K  S :   F  A  S  G  G  E  D  G  Y  V  R  L  H  H  F  D  Q  D  Y  F  N  I  R  I  *  I  L  I  G  S  G  F  A  S  F  V  T  F  R  C  S  V  E  K  E  D  N  Y  V  F  P  V  I  S  I  E  F  F  V  C  F  Y  C  C  N  L  C  S  S  H  E  R  N  *  H  F  I  S  G  Q  V  E  Q  N  I  F  T  G  Y  F  *  :  V  T  Y  K  V  E  </first_frame>
            <second_frame>  R  L  R  L  S  P  S  F  L  S  G  E  L  T  P  A  T  N  N  N  L  T  E  R  I  T  P  A  T  D  Y  K  Q  R  *  G  Q  Y  *  *  R  A  M  K  G  R  *  L  F  *  S  T  T  E  M  E  I  C  S  S  L  A  L  R  T  I  P  L  P  F  G  L  P  I  T  A  S  A  S  A  L  T  V  A  I  T  V  P  F  G  A  V  T  F  L  :  G  I  R  P  G  *  *  L  E  V  R  I  R  L  Q  C  C  G  M  S  K  L  V  P  S  C  T  R  S  P  L  T  P  L  L  G  L  L  I  F  Q  L  A  I  N  S  Q  *  S  P  L  I  L  L  W  D  *  H  L  L  S  I  S  K  I  S  A  K  I  P  V  N  :  K  *  V  S  R  C  S  S  *  R  V  P  R  E  E  S  T  E  L  C  G  D  P  *  I  K  Q  L  *  V  L  V  K  M  L  *  Y  V  S  G  M  L  R :   L  E  R  Y  *  R  S  L  T  K  K  S  V  I  K  R  V  L  H  R  Y  K  N  Q  W  M  V  R  T  S  L  L  V  L  L  I  N  L  Q  S :   S  G  T  S  E  V  *  H  L  S  R  T  I  R  P  N  D  P  *  M  L  S  Q  C  R  R  F  L  I  M :   W  F  W  E  V  V  K  T  L  Q  L  S  P  L  L  T  I  V  L  E  S  L  R  P  S  S  M  T  R :   F  L  L  K  K  *  E  V  S  K  G  I  L  D  Q  *  M  L  W  L  S  I  L  M  G  K   : V  L  Q  V  V  V  K  M  D  M  *  D  C  I  I  L  T  R  I  T  S  T  S  G  F  R  F  *  *  D  Q  V  L  Q  V  L  L  L  F  G  V  Q  *  K  R  R  I  I  M  S  F  L  L  S  P  L  N  F  L  Y  A  F  I  V  A  T  Y  V  H  R  T  R  G  T  N  I  L  F  L  D  K  L  S  K  T  Y  L  L  D  I  F  R :   *  H  I  K  *  K </second_frame>
            <third_frame>   V  F  V  S  L  H  L  S  S  A  A  N  L  L  R  R  R  T  T  I  S  L  R  E  S  L  R  R  P  T  T  N  N  D  E  A  N  I  D  E  G  P  *  K  A  V  N  F  S  K  V  Q  Q  R  W  R  S  A  L  L  L  R  *  G  P  Y  P  Y  R  L  V  C  R  *  R  R  A  P  R  H  L  P  W  P  *  R  C  R  L  V  L  *  R  F  S :   G  F  V  Q  A  N  N  W  K  C  G  S  D  C  N  V  V  G  C  P  N  W  C  P  A  A  H  V  H  L  *  L  P  C  *  V  C  *  F  F  S  W  R  *  T  R  S  D  H  H  *  S  F  Y  G  T  D  I  C  Y  P  Y  Q  K  Y  Q  Q  R  S  Q  *  T :   N  E  *  V  G  A  R  L  K  G  S  P  G  K  N  Q  Q  S  C  V  G  T  P  E  *  N  N  Y  K  C  W  *  R  C  C  N  T  Y  L  G  C  *   : D  W  K  G  T  E  G  V  *  Q  R  N  R  S  *  K  G  Y  Y  I  A  T  K  I  S  G  W  F  A  L  H  Y  W  F  S  *  *  I  C  K   : A  L  G  H  Q  K  F  D  T  Y  Q  E  L  Y  D  R  T  T  R  E  C  C  H  N  V  A  A  S  *  S   : C  G  S  G  R  W  S  R  R  F  S  C  H  H  Y  *  P  S  C  W  K  V  *  G  Q  V  L  *  Q   : D  S  Y  *  R  N  R  R  C  Q  R  A  F  W  T  N  K  C  F  G  F  Q  S  *  W  E  K  :  F  C  K  W  W  *  R  W  I  C  E  I  A  S  F  *  P  G  L  L  Q  H  Q  D  L  D  F  D  R  I  R  F  C  K  F  C  Y  F  S  V  F  S  R  K  G  G  *  L  C  L  S  C  Y  L  H  *  I  F  C  M  L  L  L  L  Q  P  M  F  I  A  R  E  E  L  T  F  Y  F  W  T  S  *  A  K  H  I  Y  W  I  F  L   : G  N  I  *  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12676" stop="12460"/>
                    <exon start="11368" stop="11153"/>
                    <exon start="9438" stop="9311"/>
                    <exon start="9040" stop="8921"/>
                    <exon start="8753" stop="8664"/>
                    <exon start="8054" stop="7968"/>
                    <exon start="7846" stop="7767"/>
                    <exon start="6917" stop="6842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENHSGDRLQTTMRPILMKGHERPLTFLKYNRDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAMLWDVQTGAQLHTFTFDSPARSVDFSVGDKLAVITTDPFMGLTSAIHIKNISKDPSEQMSESVLVLKGPQGRINRAVWGPLNKTIISAGEDAVIRIWDAETGKVLKESDKEIGHKKGITSLQKSVDGSHFITGSLDKSAKLWDIRSLTLIKNYTTERPVNAVTMSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILTEEIGGVKGHFGPINALAFNPDGKSFASGGEDGYVRLHHFDQDYFNIRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="73913" PGL_stop="74701"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73913" e_stop="74308"/>
            <exon e_start="74383" e_stop="74701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="73913" e_stop="74308" e_length="396"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74309" i_stop="74382" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="74383" e_stop="74701" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73913" stop="74308"/>
              <exon start="74383" stop="74701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTGTTGACAGTCATAAGAGAATTGGATTGCATGAAGAGGCGTGCTAGTCTATTTAGAAGGACAACTGAGGTATCTGCAGCATTAGAATGGATAGAAGACTGCATGATAAATGCAAAGGCATGGATTCATGTACAGAGTTGTGCAGAGGAAACAAGAGCAGTGGCACCAACCCCTCCTGCTACAGCTCCATTGTCTTTGTTCAGTGAGGAGAATGGCATGTTTCCTGTTGGCTCACATCAATTTTCTCCACATAGTGGTCTAATGGATTTTGCCTCACCCACAGCAGAAGATCATATCCTTGAATATGCCCTCTTCTTCAAAAGAACCAACAGAAACGGACAACTCGTCCTTCTTAGCAACGATCTTACCATGAAAATCAAAGCCATGGCAGAA : GGTTTGAACTGTGAGACAGCAGAAGAGTTCCGCGAGAGCTTAGTGAATCCATTCTCTGAGAGATTTCTTTGGAAGGACAGCTCTCCCAGGGGAAGGACTTGGTCATGTGAGGATGACTTTGTTCTTAGGGAAACATATTACCACGGCCCTCCAAAGAAGCCATCAATGTCAGGAGAAGCTGCAAAAGGGTTGAAGCTCATATTGCTCCATAATTCTCATTTTAGGTGCCACATCAGTACAGCCAGTTGAATCAGTTAGGTATTATAGCTGTGTACAACCTTTTCTTTTCAATTGCAACAATCATGTTCAATTTCTTTTG</gDNA_template>
            <first_frame> S  L  L  T  V  I  R  E  L  D  C  M  K  R  R  A  S  L  F  R  R  T  T  E  V  S  A  A  L  E  W  I  E  D  C  M  I  N  A  K  A  W  I  H  V  Q  S  C  A  E  E  T  R  A  V  A  P  T  P  P  A  T  A  P  L  S  L  F  S  E  E  N  G  M  F  P  V  G  S  H  Q  F  S  P  H  S  G  L  M  D  F  A  S  P  T  A  E  D  H  I  L  E  Y  A  L  F  F  K  R  T  N  R  N  G  Q  L  V  L  L  S  N  D  L  T  M  K  I  K  A  M  A  E  :  G  L  N  C  E  T  A  E  E  F  R  E  S  L  V  N  P  F  S  E  R  F  L  W  K  D  S  S  P  R  G  R  T  W  S  C  E  D  D  F  V  L  R  E  T  Y  Y  H  G  P  P  K  K  P  S  M  S  G  E  A  A  K  G  L  K  L  I  L  L  H  N  S  H  F  R  C  H  I  S  T  A  S  *  I  S  *  V  L  *  L  C  T  T  F  S  F  Q  L  Q  Q  S  C  S  I  S  F  </first_frame>
            <second_frame>  P  C  *  Q  S  *  E  N  W  I  A  *  R  G  V  L  V  Y  L  E  G  Q  L  R  Y  L  Q  H  *  N  G  *  K  T  A  *  *  M  Q  R  H  G  F  M  Y  R  V  V  Q  R  K  Q  E  Q  W  H  Q  P  L  L  L  Q  L  H  C  L  C  S  V  R  R  M  A  C  F  L  L  A  H  I  N  F  L  H  I  V  V  *  W  I  L  P  H  P  Q  Q  K  I  I  S  L  N  M  P  S  S  S  K  E  P  T  E  T  D  N  S  S  F  L  A  T  I  L  P  *  K  S  K  P  W  Q  K :   V  *  T  V  R  Q  Q  K  S  S  A  R  A  *  *  I  H  S  L  R  D  F  F  G  R  T  A  L  P  G  E  G  L  G  H  V  R  M  T  L  F  L  G  K  H  I  T  T  A  L  Q  R  S  H  Q  C  Q  E  K  L  Q  K  G  *  S  S  Y  C  S  I  I  L  I  L  G  A  T  S  V  Q  P  V  E  S  V  R  Y  Y  S  C  V  Q  P  F  L  F  N  C  N  N  H  V  Q  F  L  L </second_frame>
            <third_frame>   L  V  D  S  H  K  R  I  G  L  H  E  E  A  C  *  S  I  *  K  D  N  *  G  I  C  S  I  R  M  D  R  R  L  H  D  K  C  K  G  M  D  S  C  T  E  L  C  R  G  N  K  S  S  G  T  N  P  S  C  Y  S  S  I  V  F  V  Q  *  G  E  W  H  V  S  C  W  L  T  S  I  F  S  T  *  W  S  N  G  F  C  L  T  H  S  R  R  S  Y  P  *  I  C  P  L  L  Q  K  N  Q  Q  K  R  T  T  R  P  S  *  Q  R  S  Y  H  E  N  Q  S  H  G  R   : R  F  E  L  *  D  S  R  R  V  P  R  E  L  S  E  S  I  L  *  E  I  S  L  E  G  Q  L  S  Q  G  K  D  L  V  M  *  G  *  L  C  S  *  G  N  I  L  P  R  P  S  K  E  A  I  N  V  R  R  S  C  K  R  V  E  A  H  I  A  P  *  F  S  F  *  V  P  H  Q  Y  S  Q  L  N  Q  L  G  I  I  A  V  Y  N  L  F  F  S  I  A  T  I  M  F  N  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73913" stop="74308"/>
                    <exon start="74383" stop="74631"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLTVIRELDCMKRRASLFRRTTEVSAALEWIEDCMINAKAWIHVQSCAEETRAVAPTPPATAPLSLFSEENGMFPVGSHQFSPHSGLMDFASPTAEDHILEYALFFKRTNRNGQLVLLSNDLTMKIKAMAEGLNCETAEEFRESLVNPFSERFLWKDSSPRGRTWSCEDDFVLRETYYHGPPKKPSMSGEAAKGLKLILLHNSHFRCHISTAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="75976" PGL_stop="75059"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75976" e_stop="75059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="75976" e_stop="75059" e_length="918"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75976" stop="75059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333234" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAACCTTCCTCCCGGTTCCTATGAGATTCTACAGTTGGAAAAAGAGGAAATCCTTGCACCACACACTCACTTTTGCACAATTTGTGGCAAGGGATTTAAGAGGGATGCGAATTTGCGAATGCACATGAGAGGTCATGGAGATGAGTACAAGACTCCAGCAGCTCTTGCAAAGCCTCATAAAGAACCCAGTTCTGAGCCAACACTCATCAAAAGGTATTCCTGTCCGTATGTTGGATGCAAGCGCAATAAGGAGCATAAAAAGTTTCAACCTCTCAAAACCATCTTATGTGTGAAAAACCATTACAAGAGAACCCACTGTGAGAAAGCCTATACTTGCAGTAGATGTAACATTAAGAAATTTTCAGTAATTGCTGATCTTAAAACACATGAAAAGCATTGTGGAAAGGATAAGTGGCTTTGTTCCTGTGGAACAACATTTTCGAGGAAAGACAAGCTTTTTGGACACATTTCCCTTTTTCAAGGTCATACTCCTGCAGTTTCTCCGGATGAAACTAAAGGATCTGCTGGGACATCTGACCGGGGCCAAACCGGTGAAGTCACCATGAAAGCTCGACAAGAAAACTATAAGGTAAATGCTTCACTTGGCAATGAGTTTCAAAATCCCGGGGTTGTAAAAGAGTGTCCATACAATCCAAGCAGTTATTTCTCACCTTTGAACTTCGATACTAGCAATCTTAATGGATTTCAAGAGTTCCCTCGACCACCATTTGACGAGTCAGATAGCTCATTCTCATTTCTGCTGTCTGGATCATGTGAATACCCTCCTCACAAGGCTGCAAAATTTATGAGTTCTAGTGAAATGGAATAACATCAACCAGTATTCAATTTGTCTTTGGTTCATTGTAGCTATTTATTCTATTATGTCATTATTATATTTTCAGAGTAACTGTGTTT</gDNA_template>
            <first_frame> R  E  P  S  S  R  F  L  *  D  S  T  V  G  K  R  G  N  P  C  T  T  H  S  L  L  H  N  L  W  Q  G  I  *  E  G  C  E  F  A  N  A  H  E  R  S  W  R  *  V  Q  D  S  S  S  S  C  K  A  S  *  R  T  Q  F  *  A  N  T  H  Q  K  V  F  L  S  V  C  W  M  Q  A  Q  *  G  A  *  K  V  S  T  S  Q  N  H  L  M  C  E  K  P  L  Q  E  N  P  L  *  E  S  L  Y  L  Q  *  M  *  H  *  E  I  F  S  N  C  *  S  *  N  T  *  K  A  L  W  K  G  *  V  A  L  F  L  W  N  N  I  F  E  E  R  Q  A  F  W  T  H  F  P  F  S  R  S  Y  S  C  S  F  S  G  *  N  *  R  I  C  W  D  I  *  P  G  P  N  R  *  S  H  H  E  S  S  T  R  K  L  *  G  K  C  F  T  W  Q  *  V  S  K  S  R  G  C  K  R  V  S  I  Q  S  K  Q  L  F  L  T  F  E  L  R  Y  *  Q  S  *  W  I  S  R  V  P  S  T  T  I  *  R  V  R  *  L  I  L  I  S  A  V  W  I  M  *  I  P  S  S  Q  G  C  K  I  Y  E  F  *  *  N  G  I  T  S  T  S  I  Q  F  V  F  G  S  L  *  L  F  I  L  L  C  H  Y  Y  I  F  R  V  T  V  F </first_frame>
            <second_frame>  E  N  L  P  P  G  S  Y  E  I  L  Q  L  E  K  E  E  I  L  A  P  H  T  H  F  C  T  I  C  G  K  G  F  K  R  D  A  N  L  R  M  H  M  R  G  H  G  D  E  Y  K  T  P  A  A  L  A  K  P  H  K  E  P  S  S  E  P  T  L  I  K  R  Y  S  C  P  Y  V  G  C  K  R  N  K  E  H  K  K  F  Q  P  L  K  T  I  L  C  V  K  N  H  Y  K  R  T  H  C  E  K  A  Y  T  C  S  R  C  N  I  K  K  F  S  V  I  A  D  L  K  T  H  E  K  H  C  G  K  D  K  W  L  C  S  C  G  T  T  F  S  R  K  D  K  L  F  G  H  I  S  L  F  Q  G  H  T  P  A  V  S  P  D  E  T  K  G  S  A  G  T  S  D  R  G  Q  T  G  E  V  T  M  K  A  R  Q  E  N  Y  K  V  N  A  S  L  G  N  E  F  Q  N  P  G  V  V  K  E  C  P  Y  N  P  S  S  Y  F  S  P  L  N  F  D  T  S  N  L  N  G  F  Q  E  F  P  R  P  P  F  D  E  S  D  S  S  F  S  F  L  L  S  G  S  C  E  Y  P  P  H  K  A  A  K  F  M  S  S  S  E  M  E  *  H  Q  P  V  F  N  L  S  L  V  H  C  S  Y  L  F  Y  Y  V  I  I  I  F  S  E  *  L  C   </second_frame>
            <third_frame>   R  T  F  L  P  V  P  M  R  F  Y  S  W  K  K  R  K  S  L  H  H  T  L  T  F  A  Q  F  V  A  R  D  L  R  G  M  R  I  C  E  C  T  *  E  V  M  E  M  S  T  R  L  Q  Q  L  L  Q  S  L  I  K  N  P  V  L  S  Q  H  S  S  K  G  I  P  V  R  M  L  D  A  S  A  I  R  S  I  K  S  F  N  L  S  K  P  S  Y  V  *  K  T  I  T  R  E  P  T  V  R  K  P  I  L  A  V  D  V  T  L  R  N  F  Q  *  L  L  I  L  K  H  M  K  S  I  V  E  R  I  S  G  F  V  P  V  E  Q  H  F  R  G  K  T  S  F  L  D  T  F  P  F  F  K  V  I  L  L  Q  F  L  R  M  K  L  K  D  L  L  G  H  L  T  G  A  K  P  V  K  S  P  *  K  L  D  K  K  T  I  R  *  M  L  H  L  A  M  S  F  K  I  P  G  L  *  K  S  V  H  T  I  Q  A  V  I  S  H  L  *  T  S  I  L  A  I  L  M  D  F  K  S  S  L  D  H  H  L  T  S  Q  I  A  H  S  H  F  C  C  L  D  H  V  N  T  L  L  T  R  L  Q  N  L  *  V  L  V  K  W  N  N  I  N  Q  Y  S  I  C  L  W  F  I  V  A  I  Y  S  I  M  S  L  L  Y  F  Q  S  N  C  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75975" stop="75145"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKEPSSEPTLIKRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRTHCEKAYTCSRCNIKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHISLFQGHTPAVSPDETKGSAGTSDRGQTGEVTMKARQENYKVNASLGNEFQNPGVVKECPYNPSSYFSPLNFDTSNLNGFQEFPRPPFDESDSSFSFLLSGSCEYPPHKAAKFMSSSEME*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="77729" PGL_stop="76197"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77729" e_stop="77685"/>
            <exon e_start="76692" e_stop="76197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77729" e_stop="77685" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77684" i_stop="76693" i_length="992"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="76692" e_stop="76197" e_length="496"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77729" stop="77685"/>
              <exon start="76692" stop="76197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327983" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCCAATAGTAAGAAAGAAGAACCATTGGCTGACCTTCAATCTG : GAAGCATATTCAGATATGGATCCTGACGACAGTCTAAGTGAAGATCCTTGGATAAAGTCTTCTTCGTCTGGCAACGAATTGCTGAAAATTATGCCCTCAGATAACCATTCATTTACCAATTTAAATCTGCATGAGCAGAAGTGGGAAGGTTCCTCTTATTTGGATCAAGAAATCAGGATTGAGCAACAGTTTACTGGATTTGCTAAACCAAAACACACATCTGAGATGGATCAACAGGGGAATCAAAATCATGATACGACCAGAATACATGACTGGGATCCAAGAGCTTTGCTAAACAACCTTTCGTTTCTCGAACAAAAGATTCATCAGCTCCAGGAGCTGGTGCATTTGATTGTTGGGCGGAGAGGTCAAGATGAGGTTCAGGGAAATGACCTTATAGTTCAGCAACAACAGTTAATCACAGCTGATCTTACTTCTATTATAGTCCAATTGATATCAACTGCAGGAAGTCTTCTTCCAACTATGAAGTACACTC</gDNA_template>
            <first_frame> F  P  I  V  R  K  K  N  H  W  L  T  F  N  L  :  E  A  Y  S  D  M  D  P  D  D  S  L  S  E  D  P  W  I  K  S  S  S  S  G  N  E  L  L  K  I  M  P  S  D  N  H  S  F  T  N  L  N  L  H  E  Q  K  W  E  G  S  S  Y  L  D  Q  E  I  R  I  E  Q  Q  F  T  G  F  A  K  P  K  H  T  S  E  M  D  Q  Q  G  N  Q  N  H  D  T  T  R  I  H  D  W  D  P  R  A  L  L  N  N  L  S  F  L  E  Q  K  I  H  Q  L  Q  E  L  V  H  L  I  V  G  R  R  G  Q  D  E  V  Q  G  N  D  L  I  V  Q  Q  Q  Q  L  I  T  A  D  L  T  S  I  I  V  Q  L  I  S  T  A  G  S  L  L  P  T  M  K  Y  T  </first_frame>
            <second_frame>  S  Q  *  *  E  R  R  T  I  G  *  P  S  I  W :   K  H  I  Q  I  W  I  L  T  T  V  *  V  K  I  L  G  *  S  L  L  R  L  A  T  N  C  *  K  L  C  P  Q  I  T  I  H  L  P  I  *  I  C  M  S  R  S  G  K  V  P  L  I  W  I  K  K  S  G  L  S  N  S  L  L  D  L  L  N  Q  N  T  H  L  R  W  I  N  R  G  I  K  I  M  I  R  P  E  Y  M  T  G  I  Q  E  L  C  *  T  T  F  R  F  S  N  K  R  F  I  S  S  R  S  W  C  I  *  L  L  G  G  E  V  K  M  R  F  R  E  M  T  L  *  F  S  N  N  S  *  S  Q  L  I  L  L  L  L  *  S  N  *  Y  Q  L  Q  E  V  F  F  Q  L  *  S  T  L </second_frame>
            <third_frame>   P  N  S  K  K  E  E  P  L  A  D  L  Q  S   : G  S  I  F  R  Y  G  S  *  R  Q  S  K  *  R  S  L  D  K  V  F  F  V  W  Q  R  I  A  E  N  Y  A  L  R  *  P  F  I  Y  Q  F  K  S  A  *  A  E  V  G  R  F  L  L  F  G  S  R  N  Q  D  *  A  T  V  Y  W  I  C  *  T  K  T  H  I  *  D  G  S  T  G  E  S  K  S  *  Y  D  Q  N  T  *  L  G  S  K  S  F  A  K  Q  P  F  V  S  R  T  K  D  S  S  A  P  G  A  G  A  F  D  C  W  A  E  R  S  R  *  G  S  G  K  *  P  Y  S  S  A  T  T  V  N  H  S  *  S  Y  F  Y  Y  S  P  I  D  I  N  C  R  K  S  S  S  N  Y  E  V  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77729" stop="77685"/>
                    <exon start="76692" stop="76198"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPIVRKKNHWLTFNLEAYSDMDPDDSLSEDPWIKSSSSGNELLKIMPSDNHSFTNLNLHEQKWEGSSYLDQEIRIEQQFTGFAKPKHTSEMDQQGNQNHDTTRIHDWDPRALLNNLSFLEQKIHQLQELVHLIVGRRGQDEVQGNDLIVQQQQLITADLTSIIVQLISTAGSLLPTMKYT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="85109" PGL_stop="86562"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85109" e_stop="86562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="85109" e_stop="86562" e_length="1454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85109" stop="85667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85113" stop="86562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACATGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAAGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTATGATGATAGTATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAACGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGTTCCAGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCCCTACCATGACCACCTCTACCTCTAACATTTGGAGGTTTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCATATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGCGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCGCCTCCCTTTTGAAACCTCTTTGATGTCGGTGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTTTACCATGAAATCTACCACCTCTTGGAAGGATTTTGCAGTAGCCGCTATCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGGCGAATCCACTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAAAGCACAAAACTTAGCCTCATATGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAATCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACTAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGATAGTCAACCAGAAAATCATAAGCATCTTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGAATCCATACGAGGAGCCATAGTGGCTGCATGTTGCACTTCTGAAATCGGAGGTGTTGGCGCAGAAAACACTGGAGGAAAACACTAGAGGTGCCAGACCTTGATCAGAAAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGCTGGGGTGGAAATTCCTCATTTTGCACTTGTTCATTCTCCCCTTCCTAACCCTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGACT</gDNA_template>
            <first_frame> K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  *  Y  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  W  F  Q  F  S  H  H  L  G  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  P  Y  H  D  H  L  Y  L  *  H  L  E  V  C  N  S  V  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  R  N  L  R  N  P  V  L  *  S  K  N  H  *  T  R  L  P  F  E  T  S  L  M  S  V  P  W  *  I  H  L  A  S  L  L  P  P  L  P  *  N  L  P  P  L  G  R  I  L  Q  *  P  L  S  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  G  E  S  T  L  V  D  *  N  I  V  G  W  H  T  G  I  K  H  K  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  I  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  *  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  L  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  M  C  L  C  P  M  R  N  P  Y  E  E  P  *  W  L  H  V  A  L  L  K  S  E  V  L  A  Q  K  T  L  E  E  N  T  R  G  A  R  P  *  S  E  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  F  S  P  S  *  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </first_frame>
            <second_frame>  N  M  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  K  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  Y  D  D  S  I  R  C  L  R  F  R  P  P  R  E  N  V  T  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  F  P  I  T  S  A  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  P  T  M  T  T  S  T  S  N  I  W  R  F  V  T  L  F  W  T  I  S  L  N  M  S  N  L  P  I  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  N  C  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  A  S  L  L  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  E  I  Y  H  L  L  E  G  F  C  S  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  A  N  P  L  L  W  T  E  T  *  L  G  G  I  P  G  *  S  T  K  L  S  L  I  C  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  S  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  I  V  N  Q  K  I  I  S  I  F  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  C  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  H  F  *  N  R  R  C  W  R  R  K  H  W  R  K  T  L  E  V  P  D  L  D  Q  K  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  A  G  V  E  I  P  H  F  A  L  V  H  S  P  L  P  N  P  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  D  </second_frame>
            <third_frame>   T  *  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  R  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  M  M  I  V  S  D  A  S  A  S  D  R  P  G  K  T  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  V  P  V  F  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  L  *  L  C  F  G  Q  Y  L  L  I  C  P  I  S  P  Y  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  T  A  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  *  N  L  F  D  V  G  A  M  V  N  S  S  G  F  T  P  S  T  F  T  M  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  H  S  C  G  L  K  H  S  W  V  A  Y  R  D  K  A  Q  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  N  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  L  N  R  S  T  I  P  I  L  C  S  S  S  *  *  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  E  S  I  R  G  A  I  V  A  A  C  C  T  S  E  I  G  G  V  G  A  E  N  T  G  G  K  H  *  R  C  Q  T  L  I  R  K  P  T  E  I  G  E  N  L  I  D  H  L  W  G  R  L  G  W  K  F  L  I  L  H  L  F  I  L  P  F  L  T  L  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85678" stop="86040"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLFDVGAMVNSSGFTPSTFTMKSTTSWKDFAVAAICKAEIRNSDLNPFTKRRIHSCGLKHSWVAYRDKAQNLASYALTDILPCSRLKNSSLFLSLKVRGIYFSINNLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0064J13.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85341" stop="85595"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSFPITSAILVTTITSTTTSSRITAPTMTTSTSNIWRFVTLFWTISLNMSNLPISIALSGFMHRSLREVLTGRRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="87323" PGL_stop="87077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87323" e_stop="87077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="87323" e_stop="87077" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87323" stop="87077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335074" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTAGCTTCTTAGAATACTCTTAGTTTAGTGATTTGATTATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGACTATTGATTTTTATTA</gDNA_template>
            <first_frame> S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  R  C  L  E  L  P  A  W  T  S  F  L  C  I  L  A  S  *  N  T  L  S  L  V  I  *  L  *  M  F  L  *  *  *  L  P  D  F  G  E  *  *  V  L  S  Y  R  S  *  L  L  I  F  I  </first_frame>
            <second_frame>  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  *  L  L  R  I  L  L  V  *  *  F  D  Y  R  C  S  C  D  D  D  F  Q  I  L  G  N  D  K  F  *  V  I  E  V  D  Y  *  F  L  L </second_frame>
            <third_frame>   *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  S  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  S  F  L  E  Y  S  *  F  S  D  L  I  I  D  V  L  V  M  M  T  S  R  F  W  G  M  I  S  F  E  L  *  K  L  T  I  D  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0064J13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="88006" PGL_stop="87451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88006" e_stop="87733"/>
            <exon e_start="87694" e_stop="87451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.945"/>
          <exon-only e_score="0.898"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="88006" e_stop="87733" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87732" i_stop="87695" i_length="38"/>
          </intron>
          <exon e_serial="2" e_score="0.898">
            <gDNA_exon_boundary e_start="87694" e_stop="87451" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88006" stop="87733"/>
              <exon start="87694" stop="87451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTGCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGGATCGGGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCAC : GTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAAGGAATCTTGAAAGATGTTAATATATTCAATTTAATGAACCGAATCCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTAATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  L  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y  G  S  G  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S   : R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  G  I  L  K  D  V  N  I  F  N  L  M  N  R  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  M  K  V  V  R  L  G  D  R  V  P  R  C  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  D  R  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  :  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  K  E  S  *  K  M  L  I  Y  S  I  *  *  T  E  S  P  N  E  Y  D  E  E  A  *  V  L  I  N  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  *  K  *  *  D  *  G  I  G  C  H  V  A  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  W  I  G  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T :   F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  R  N  L  E  R  C  *  Y  I  Q  F  N  E  P  N  P  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0064J13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 58 chains have been computed
$ 
$ memory statistics:
$ 34160 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 3416 bytes was the average size of a spliced alignment
$ 15288 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1698 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 69 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:33:30
-->
