<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:42:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402530" ref_strand="+" ref_description="SGN-E402530 [PPC-8-A15]">
      <seq>atttgaggaaaaaaaatggtgatgtgggtatttggatatggatctctaatttggaagcctggctttaactacgatgatcatcttttcggttttatcaaaggctatcgtcgtgtcttttatcaaggcagtactgatcacagagggacaccagaattcccaggtagaacagtgacactggagcctgctgaaggagaaatttgttggggtatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="3358" stop="2364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3070" g_stop="2943" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2942" i_stop="2750" i_length="193">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2749" g_stop="2673" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="201" r_length="77" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E402530" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3070" e_stop="2943"/>
          <exon e_start="2749" e_stop="2673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAGGAATAAAAAAAAATGGTGATGTGGGTATTTGGATATGGATCTCTAATTTGGAAGCCTGGGTTTAACTACGATGATCGTCTTTTCGGTTTTATCAAAGGCTATCGTCGTGTCTTTTATCAAGGTATGGCTTCTAATTTTTGTTTTGTATGTTTATTGAATTGCTTGTGAATGTTACAATGTCATATGAATAGTCAAAGTGAAAAGAATTAATTTTTAAGAACTATATGGAAATGTTTTGGATTTTAAGTATGATATATAGTTGGTCAAGTTAGTGGAGAGTTAATAGAAGTTTATATATATGTGTTGTTGTGTAGGCAGTACTGATCATAGAGGGACACCAGAATTCCCAGGTAGAACAGTAACACTGGAGCCTGCTGAAGGAGAAATTTGT</genome_strand>
        <mrna_strand>ATTTGAGG-A-AAAA-AAA-TGGTGATGTGGGTATTTGGATATGGATCTCTAATTTGGAAGCCTGGCTTTAACTACGATGATCATCTTTTCGGTTTTATCAAAGGCTATCGTCGTGTCTTTTATCAAG.................................................................................................................................................................................................GCAGTACTGATCACAGAGGGACACCAGAATTCCCAGGTAGAACAGTGACACTGGAGCCTGCTGAAGGAGAAATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338856" ref_strand="+" ref_description="SGN-E338856 [cTOE-21-K7]">
      <seq>tttgtatagaaaggtattagggcaatccacaacattctttggctctgctcaaatttcatttgaggaataaaaaaaaatggtgatgtgggtatttggatatggatctctaatttggaagcctgggtttaactacgatgatcgtcttttcggttttatcaaaggctatcgtcgtgtcttttatcaaggcagtactgatcatagagggacaccagaattcccaggtagaacagtaacactggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="3405" stop="2392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3126" g_stop="2943" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2942" i_stop="2750" i_length="193">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2749" g_stop="2692" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="243" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E338856" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3126" e_stop="2943"/>
          <exon e_start="2749" e_stop="2692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTATAGAAAGGTATTA-ACCAATCCACAACATTCTTTGGCTCTGCTCAAATTTCATTTGAGGAATAAAAAAAAATGGTGATGTGGGTATTTGGATATGGATCTCTAATTTGGAAGCCTGGGTTTAACTACGATGATCGTCTTTTCGGTTTTATCAAAGGCTATCGTCGTGTCTTTTATCAAGGTATGGCTTCTAATTTTTGTTTTGTATGTTTATTGAATTGCTTGTGAATGTTACAATGTCATATGAATAGTCAAAGTGAAAAGAATTAATTTTTAAGAACTATATGGAAATGTTTTGGATTTTAAGTATGATATATAGTTGGTCAAGTTAGTGGAGAGTTAATAGAAGTTTATATATATGTGTTGTTGTGTAGGCAGTACTGATCATAGAGGGACACCAGAATTCCCAGGTAGAACAGTAACACTGGAGCC</genome_strand>
        <mrna_strand>TTTGTATAGAAAGGTATTAGGGCAATCCACAACATTCTTTGGCTCTGCTCAAATTTCATTTGAGGAATAAAAAAAAATGGTGATGTGGGTATTTGGATATGGATCTCTAATTTGGAAGCCTGGGTTTAACTACGATGATCGTCTTTTCGGTTTTATCAAAGGCTATCGTCGTGTCTTTTATCAAG.................................................................................................................................................................................................GCAGTACTGATCATAGAGGGACACCAGAATTCCCAGGTAGAACAGTAACACTGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475420" ref_strand="+" ref_description="SGN-E475420 [cSTB-38-P24]">
      <seq>ttcataaaaagccacgcggtggtcacctccgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgctttcttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagattcattagtggacatattcagttcaggggaagcagttgaccaaagccaaataaatgtagatcttatgcatgatgcatcttcgtcaaatgctccttgtacatctgcagggcagaaggttgtagatgctatagatgcagatggatcacatttgctggccgaagataggacaaaagaagctcacacttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaaactcactatttcagaagcttgccagatggaaatgacgatcaggctcagttggataaagcatcgaggatattccatactgctttggaggagatgcaaaaatctggatgtgcaatgttcaaccgaaacaaccttgctgagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5103" stop="14925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5403" g_stop="5509" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8577" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="364" r_length="257" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8578" i_stop="9572" i_length="995">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="398" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="535" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14625" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="590" r_length="55" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E475420" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5403" e_stop="5509"/>
          <exon e_start="8321" e_stop="8577"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAAAAAGCCACGCGGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCT</genome_strand>
        <mrna_strand>TTCATAAAAAGCCACGCGGTGGTCACCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTTCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAATAAATGTAGATCTTATGCATGATGCATCTTCGTCAAATGCTCCTTGTACATCTGCAGGGCAGAAGGTTGTAGATGCTATAGATGCAGATGGATCACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCCAGATGGAAATGACGATCAGGCTCAGTTGGATAAAGCATCGAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399802" ref_strand="+" ref_description="SGN-E399802 [cSTC-2-D23]">
      <seq>tcataaaaagccacgcggtggtctcctccgtcaatggcgattctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcgtctcatgcctcaagttcagattcattagtggacatattcagttcatgggaagcagttgaccgaagccaaataaatgtagatcttaggcatgatgtatcttcgtcaaatgctccttgtacatcttcagggcagaaggttgtagatgctattagatgcatatggatcacatttgctggccgaagataggacaaaagaagctcacacttttggtatatccaaagatgagctctttgggcagctttttgatgctcttgaaaaaactcactatttcagaagcttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5104" stop="12136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5404" g_stop="5509" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8577" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="364" r_length="258" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8578" i_stop="9572" i_length="995">
            <donor d_prob="0.990" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="398" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11836" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="471" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E399802" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5404" e_stop="5509"/>
          <exon e_start="8321" e_stop="8577"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAAAAAGCCACGCGGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTA-AAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCC</genome_strand>
        <mrna_strand>TCATAAAAAGCCACGCGGTGGTCTCCTCCGTCAATGGCGATTCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCGTCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCATGGGAAGCAGTTGACCGAAGCCAAATAAATGTAGATCTTAGGCATGATGTATCTTCGTCAAATGCTCCTTGTACATCTTCAGGGCAGAAGGTTGTAGATGCTATTAGATGCATATGGATCACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGCTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689366" ref_strand="+" ref_description="SGN-E689366 [t3_tus_84_F23]">
      <seq>tttcggtggtctcctccgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgattatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagactcattagtggacatattcagttcaggggaagcagttgaccaaagccaaagaagtgtagatcttaggcatgatgtatcttcatcagatgctccttgtacatcttcaaggcagaaggttgtacatgctaaagatgcagatcgatcacatttgctggccgaagataggacaaaagaagctcacagttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaatctcactatttcagaagcttgcccgatggaaatgacgatcaggctcagttggataaggcatcaaggatattccatactgctttggaggagatgcaaaaatctggatgtactattttcaaccgaaacaacctcgctgagatcttaaaatcacaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaattgcactttgtgaagataatgcagtttactattgcaacagggcagctgctttaacccagatccaacaatatgaagcagcagttcaagactgccaaaaatctattgcaatcaaccccaattatagcagggcttatagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5119" stop="17343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5416" g_stop="5509" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8577" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="351" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8578" i_stop="9572" i_length="995">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="385" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="522" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="589" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16299" g_stop="16398" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="689" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16946" g_stop="17043" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="787" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E689366" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5416" e_stop="5509"/>
          <exon e_start="8321" e_stop="8577"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16398"/>
          <exon e_start="16946" e_stop="17043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCGGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAGGTGCGTCATTATCACATTGATGGAAGAAAGTTACTATCGCTTTTCGCATGCAAAAATATTACTTCATCCATCCCAATTTATGTGATATCCTTCCTTTTTAGTCAGTTAAAAAAATGACACCTTTCTGTATTTAAAACATATCTGGTGGTTTTTGTTTGGGCCAGTGTTTTAGTTCTGCATCTTTGCATTGCCTGTTGGGCCTTCTTTGTTTATTTATTTTAAAGAAAGACATTGTTTGGTTGCTTATTGATATATAAAATCAGCCTCCTGGTCTTCTTTTTTTTTTTTTTTTTGAAAAAGTAACAGTTTAACTTTAAACTTTTCATTTTACCCTCAAGAGATGTTCTATAGTCACATAAATATCTATGAATTATTTTAGACCACAAGTATTATCGTTCTTTCTTTCTTGAACTCTGTTGCCTGTCAAAAACCATGGGATGAAGGAGTATTTGTTATGTCTATTTTTTTGAAAATTCTAACACCAATGAGATGAATCTTTCTAATTGTGAGTATCTCTAATTAAGATGAAGTTTTTGTGATGTATCAGGGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTA</genome_strand>
        <mrna_strand>TTTCGGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAGGGCTTATAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555006" ref_strand="+" ref_description="SGN-E555006 [cTSC-6-B9]">
      <seq>cggtggtctcctccgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgattatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagactcattagtggacatattcagttcaggggaagcagttgaccaaagccaaagaagtgtagatcttaggcatgatgtatcttcatcagatgctccttgtacatcttcaaggcagaaggccgaagataggacaaaagaagctcacagttttgtgtcattaaatgctcgcttgaagcacacttaaactctgaagttttgtgaggcgcaatttagacgttccaccttgctgagatggcggttttgtgcaagcaccaagccacttagacctacacctcatcaccacgggtctgtctttaagagggcaaatcttggcaattaatatagttggcaaagcaatatagtttttgttaacaaaacgttattaatgaacttgttagtgatcgggatcaagaaactagagaactaataaagcactgctaactaactttttttttttaaaaaaatgtacatgtttgcatccaattcttaagtttaatttggttcatgtactttttgcatctatattttgcctagttccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5119" stop="10539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5419" g_stop="5509" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8538" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="309" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="343" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="9872" i_length="266">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9873" g_stop="10242" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="713" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E555006" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5419" e_stop="5509"/>
          <exon e_start="8321" e_stop="8538"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="9873" e_stop="10242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTT</genome_strand>
        <mrna_strand>CGGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG..........................................................................................................................................................................................................................................................................TGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333161" ref_strand="+" ref_description="SGN-E333161 [cTOD-19-J20]">
      <seq>ggtggtctcctccgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgattatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagactcattagtggacatattcagttcaggggaagcagttgaccaaagccaaagaagtgtagatcttaggcatgatgtatcttcatcagatgctccttgtacatcttcaaggcagaaggttgtacatgctaaagatgcagatcgatcacatttgctggccgaagataggacaaaagaagctcacagttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaatctcactatttcagaagcttgcccgatggaaatgacgatcaggctcagttggataaggcatcaaggatattccatactgctttggaggagatgcaaaaatctggatgtactattttcaaccgaaacaacctcgctgagatcttaaaatcacaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgncattgcactttgtgaagataatgcagtttactattggcacagggcagctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5120" stop="16708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5420" g_stop="5509" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8577" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="347" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8578" i_stop="9572" i_length="995">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="381" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="518" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="585" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16299" g_stop="16398" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="685" r_length="100" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E333161" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5420" e_stop="5509"/>
          <exon e_start="8321" e_stop="8577"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG</genome_strand>
        <mrna_strand>GGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGNCATTGCACTTTGTGAAGATAATGCAGTTTACTATTGGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442141" ref_strand="+" ref_description="SGN-E442141 [cSTA-32-G19]">
      <seq>gtggtctcctccgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcgtctcatgcctcaagttcagattcattagtggacatattcagttcaggggaagcagttgaccgaagccaaataaatgtagatcttaggcatgatgtatcttcgtcaaatgctccttgtacatcttcagggcagaaggccgaagataggacaaaagaagctcacacttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaaactcactatttcagaagcttgccagatggaaacgacgatcaggctcagttggataaagcatcgaggatattccatactgctttggaggagatgcaaaaatctggatgtgcaatgttcaaccgaaacaaccttgctgagatcttaaaatcgcaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5121" stop="16646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5421" g_stop="5509" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8538" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="307" r_length="218" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="341" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="478" r_length="137" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="545" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16299" g_stop="16344" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="591" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E442141" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5421" e_stop="5509"/>
          <exon e_start="8321" e_stop="8538"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCT</genome_strand>
        <mrna_strand>GTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCGTCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCGAAGCCAAATAAATGTAGATCTTAGGCATGATGTATCTTCGTCAAATGCTCCTTGTACATCTTCAGGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCCAGATGGAAACGACGATCAGGCTCAGTTGGATAAAGCATCGAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCTTAAAATCGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418507" ref_strand="+" ref_description="SGN-E418507 [STM-27-P9]">
      <seq>gtggtctcctccgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcgtctcatgcctcaagttcagattcattagtggacatattcagttcaggggaagcagttgaccgaagccaaataaatgtagatcttaggcatgatgtatcttcgtcaaatgctccttgtacatcttcagggcagaaggccgaagataggacaaaagaagctcacacttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaaactcactatttcagaagcttgccagatggaaacgacgatcaggctcagttggataaagcatcgaggatattccatactgctttggaagagatgcaaaaatctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5121" stop="14889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5421" g_stop="5509" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8538" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="307" r_length="218" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="341" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="478" r_length="137" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14589" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="497" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E418507" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5421" e_stop="5509"/>
          <exon e_start="8321" e_stop="8538"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGAT</genome_strand>
        <mrna_strand>GTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCGTCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCGAAGCCAAATAAATGTAGATCTTAGGCATGATGTATCTTCGTCAAATGCTCCTTGTACATCTTCAGGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCCAGATGGAAACGACGATCAGGCTCAGTTGGATAAAGCATCGAGGATATTCCATACTGCTTTGGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453483" ref_strand="+" ref_description="SGN-E453483 [cSTS-20-M3]">
      <seq>cacctccgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgctttcttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagattcattagtggacatattcagttcaggggaagcagttgaccaaagccaaataaatgtagatcttaggcatgatgcatcttcgtcaaatgctccttgtacatctgcagggcagaaggttgtagatgctatagatgcagatggatcacatttgctggccgaagataggacaaaagaagctcacacttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaaactcactatttcagaagcttgccagatggaaatgacgatcaggctcagttggataaagcatcgaggatattccatactgctttggaggagatgcaaaaatctggatgtgcaatgttcaaccgaaacaaccttgctgagatcttaaaatcgcaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaattgcactttgtgaagatatgcagtttactattgcaacagggcagctgctttaccccagatccaccaatatgaagcagcagttcaagactgccaaaaatctattgcaatcaatcccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5126" stop="17325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5426" g_stop="5509" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8577" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="341" r_length="257" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8578" i_stop="9572" i_length="995">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="375" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="512" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="579" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16299" g_stop="16398" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="678" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547">
            <donor d_prob="0.743" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16946" g_stop="17025" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="758" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E453483" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5426" e_stop="5509"/>
          <exon e_start="8321" e_stop="8577"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16398"/>
          <exon e_start="16946" e_stop="17025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAGGTGCGTCATTATCACATTGATGGAAGAAAGTTACTATCGCTTTTCGCATGCAAAAATATTACTTCATCCATCCCAATTTATGTGATATCCTTCCTTTTTAGTCAGTTAAAAAAATGACACCTTTCTGTATTTAAAACATATCTGGTGGTTTTTGTTTGGGCCAGTGTTTTAGTTCTGCATCTTTGCATTGCCTGTTGGGCCTTCTTTGTTTATTTATTTTAAAGAAAGACATTGTTTGGTTGCTTATTGATATATAAAATCAGCCTCCTGGTCTTCTTTTTTTTTTTTTTTTTGAAAAAGTAACAGTTTAACTTTAAACTTTTCATTTTACCCTCAAGAGATGTTCTATAGTCACATAAATATCTATGAATTATTTTAGACCACAAGTATTATCGTTCTTTCTTTCTTGAACTCTGTTGCCTGTCAAAAACCATGGGATGAAGGAGTATTTGTTATGTCTATTTTTTTGAAAATTCTAACACCAATGAGATGAATCTTTCTAATTGTGAGTATCTCTAATTAAGATGAAGTTTTTGTGATGTATCAGGGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATT</genome_strand>
        <mrna_strand>CACCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTTCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAATAAATGTAGATCTTAGGCATGATGCATCTTCGTCAAATGCTCCTTGTACATCTGCAGGGCAGAAGGTTGTAGATGCTATAGATGCAGATGGATCACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCCAGATGGAAATGACGATCAGGCTCAGTTGGATAAAGCATCGAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCTTAAAATCGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGAT-ATGCAGTTTACTATTGCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCTGCTTTACCCCAGATCCACCAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAATCCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450436" ref_strand="+" ref_description="SGN-E450436 [cSTS-9-I4]">
      <seq>cacctccgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgctttcttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagattcattagtggacatattcagttcaggggaagcagttgaccaaagccaaataaatgtagatcttaggcatgatgcatcttcgtcaaatgctccttgtacatctgcagggcagaaggttgtagatgctatagatgcagatggatcacatttgctggccgaagataggacaaaagaagctcacacttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaaactcactatttcagaagcttgccagatggaaatgacgatcaggctcagttggataaagcatcgaggatattccatactgctttggaggagatgcaaaaatctggatgtgcaatgttcaaccgaaacaaccttgctgagatcntaaaatcgcaaggtaaataagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5126" stop="16660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5426" g_stop="5509" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8577" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="341" r_length="257" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8578" i_stop="9572" i_length="995">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="375" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="512" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="579" r_length="67" r_score="0.910"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16299" g_stop="16360" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="641" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E450436" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5426" e_stop="5509"/>
          <exon e_start="8321" e_stop="8577"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATT</genome_strand>
        <mrna_strand>CACCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTTCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAATAAATGTAGATCTTAGGCATGATGCATCTTCGTCAAATGCTCCTTGTACATCTGCAGGGCAGAAGGTTGTAGATGCTATAGATGCAGATGGATCACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCCAGATGGAAATGACGATCAGGCTCAGTTGGATAAAGCATCGAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCNTAAAATCGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358915" ref_strand="+" ref_description="SGN-E358915 [cLHT-24-I22]">
      <seq>tcctccgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagactcattagtggacatattcagttcaggggaagcagttgaccaaagccaaagaagtgtagatcttaggcatgatgtatcttcatcagatgctccttgtacatcttcaaggcagaaggccgaagataggacaaaagaagctcacagttttggtatatccaaagatgagctctttgggcagttttttgatgctctagaaaaatctcactatttcagaagcttgcccgatggaaacgacgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5127" stop="12154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5427" g_stop="5509" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8538" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="301" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="335" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11854" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="426" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E358915" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5427" e_stop="5509"/>
          <exon e_start="8321" e_stop="8538"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCA</genome_strand>
        <mrna_strand>TCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTAGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAACGACGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570800" ref_strand="+" ref_description="SGN-E570800 [15442]">
      <seq>ccgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcgtctcatgcctcaagttcagattcattagtggacatattcagttcaggggaagcagttgaccgaagccaaataaatgtagatcttaggcatgatgtatcttcgtcaaatgctccttgtacatcttcangggcagaaggccgaagataggacaaaagaagctcacacttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaaactcactatttcagaagcttgccagatggaaacgacgatcaggctcagttggataaagcatcgaggatattccatactgctttggaggagatgcaaaaatctggatgtgcaatgttcaaccgaaacaaccttgctgagatcttaaaatcgcaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaattgcactttgtgaagataatgcagtttactattgcaacagggcagctgctttaacccagattcaccaatatgaagcagcagtcaagactggcaaaaatctattgcaatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5131" stop="17318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5431" g_stop="5509" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8538" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="298" r_length="219" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="332" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="469" r_length="137" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="536" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16299" g_stop="16398" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="636" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16946" g_stop="17018" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="708" r_length="72" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E570800" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5431" e_stop="5509"/>
          <exon e_start="8321" e_stop="8538"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16398"/>
          <exon e_start="16946" e_stop="17018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAA-GGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAGGTGCGTCATTATCACATTGATGGAAGAAAGTTACTATCGCTTTTCGCATGCAAAAATATTACTTCATCCATCCCAATTTATGTGATATCCTTCCTTTTTAGTCAGTTAAAAAAATGACACCTTTCTGTATTTAAAACATATCTGGTGGTTTTTGTTTGGGCCAGTGTTTTAGTTCTGCATCTTTGCATTGCCTGTTGGGCCTTCTTTGTTTATTTATTTTAAAGAAAGACATTGTTTGGTTGCTTATTGATATATAAAATCAGCCTCCTGGTCTTCTTTTTTTTTTTTTTTTTGAAAAAGTAACAGTTTAACTTTAAACTTTTCATTTTACCCTCAAGAGATGTTCTATAGTCACATAAATATCTATGAATTATTTTAGACCACAAGTATTATCGTTCTTTCTTTCTTGAACTCTGTTGCCTGTCAAAAACCATGGGATGAAGGAGTATTTGTTATGTCTATTTTTTTGAAAATTCTAACACCAATGAGATGAATCTTTCTAATTGTGAGTATCTCTAATTAAGATGAAGTTTTTGTGATGTATCAGGGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAAC</genome_strand>
        <mrna_strand>CCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCGTCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCGAAGCCAAATAAATGTAGATCTTAGGCATGATGTATCTTCGTCAAATGCTCCTTGTACATCTTCANGGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCCAGATGGAAACGACGATCAGGCTCAGTTGGATAAAGCATCGAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCTTAAAATCGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCTGCTTTAACCCAGATTCACCAATATGAAGCAGCAG-TCAAGACTGGCAAAAATCTATTGCAATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448294" ref_strand="+" ref_description="SGN-E448294 [cSTS-2-F11]">
      <seq>cgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcgtctcatgcctcaagttcagattcattagtggacatattcagttcaggggaagcagttgaccgaagccaaataaatgtagatcttaggcatgatgtatcttcgtcaaatgctccttgtacatcttcagggcagaaggccgaagataggacaaaagaagctcacacttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaaactcactatttcagaagcttgccagatggaaacgacgatcaggctcagttggataaagcatcgaggatattccatactgctttggaggagatgcaaaaatctggatgtgcaatgttcaaccgaaacaaccttgctgagatcttaaaatcgcaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5132" stop="16662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5432" g_stop="5509" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8538" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="296" r_length="218" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="330" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="467" r_length="137" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="534" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16299" g_stop="16362" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="598" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E448294" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5432" e_stop="5509"/>
          <exon e_start="8321" e_stop="8538"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGC</genome_strand>
        <mrna_strand>CGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCGTCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCGAAGCCAAATAAATGTAGATCTTAGGCATGATGTATCTTCGTCAAATGCTCCTTGTACATCTTCAGGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCCAGATGGAAACGACGATCAGGCTCAGTTGGATAAAGCATCGAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCTTAAAATCGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411096" ref_strand="+" ref_description="SGN-E411096 [STM-14-I13]">
      <seq>cgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgctttcttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagattcattagtggacatattcagttcaggggaagcagttgaccaaagccaaataaatgtagatcttaggcatgatgcatcttcgtcaaatgctccttgtacatctgcagggcagaaggttgtagatgctatagatgcagatggatcacatttgctggccgaagataggacaaaagaagctcacacttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaaactcactatttcagaagcttgccagatggaaatgacgatcaggctcagttggataaagcatcgaggatattccatactgctttggaggagatgcaaaaatctggatgtgcaatgttcaaccgaaacaaccttgctgagatcttaaaatcgcaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5132" stop="16652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5432" g_stop="5509" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8577" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="335" r_length="257" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8578" i_stop="9572" i_length="995">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="369" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="506" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="573" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16299" g_stop="16352" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="627" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E411096" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5432" e_stop="5509"/>
          <exon e_start="8321" e_stop="8577"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTT</genome_strand>
        <mrna_strand>CGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTTCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAATAAATGTAGATCTTAGGCATGATGCATCTTCGTCAAATGCTCCTTGTACATCTGCAGGGCAGAAGGTTGTAGATGCTATAGATGCAGATGGATCACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCCAGATGGAAATGACGATCAGGCTCAGTTGGATAAAGCATCGAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCTTAAAATCGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467756" ref_strand="+" ref_description="SGN-E467756 [cSTB-1-L5]">
      <seq>aattcggcacgaggcgtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgctttcttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagattcattagtggacatattcagttcaggggaagcagttgaccaaagccaaataaatgtagatcttaggcatgatgcatcttcgtcaaatgctccttgtacatctgcagggcagaaggttgtagatgctatagatgcagatggatcacatttgctggccgaagataggacaaaagaagctcacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5132" stop="9904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5432" g_stop="5509" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="92" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8577" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="349" r_length="257" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8578" i_stop="9572" i_length="995">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9604" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="381" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E467756" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5432" e_stop="5509"/>
          <exon e_start="8321" e_stop="8577"/>
          <exon e_start="9573" e_stop="9604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTT</genome_strand>
        <mrna_strand>CGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTTCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAATAAATGTAGATCTTAGGCATGATGCATCTTCGTCAAATGCTCCTTGTACATCTGCAGGGCAGAAGGTTGTAGATGCTATAGATGCAGATGGATCACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374597" ref_strand="+" ref_description="SGN-E374597 [TUS-15-N7]">
      <seq>gtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgattatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagactcattagtggacatattcagttcaggggaagcagttgaccaaagccaaagaagtgtagatcttaggcatgatgtatcttcatcagatgctccttgtacatcttcaaggcagaaggccgaagataggacaaaagaagctcacagttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaatctcactatttcagaagcttgcccgatggaaatgacgatcaggctcagttggataaggcatcaaggatattccatactgctttggaggagatgcaaaaatctggatgtactattttcaaccgaaacaacctcgctgagatcttaaaatcacaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaattgcactttgtgaagataatgcagtttactattgcaacagggcagctgcttttaccccagatccaacaatatgaagcagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5133" stop="16714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5433" g_stop="5509" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8538" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="295" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="329" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="466" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="533" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16299" g_stop="16398" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="633" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E374597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5433" e_stop="5509"/>
          <exon e_start="8321" e_stop="8538"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG</genome_strand>
        <mrna_strand>GTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204857" ref_strand="+" ref_description="SGN-E204857 [cLEC-14-L11]">
      <seq>gtcaatggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgattatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagactcattagtggacatattcagttcaggggaagcagttgaccaaagccaaagaagtgtagatcttaggcatgatgtatcttcatcagatgctccttgtacatcttcaaggcagaaggccgaagataggacaaaagaagctcacagttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaatctcactatttcagaagcttgcccgatggaaatgacgatcaggctcagttggataaggcatcaaggatattccatactgctttggaggagatgcaaaaatctggatgtactattttcaaccgaaacaacctcgctgagatcttaaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5133" stop="14933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5433" g_stop="5509" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8538" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="295" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="329" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="466" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14633" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="529" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E204857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5433" e_stop="5509"/>
          <exon e_start="8321" e_stop="8538"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCA</genome_strand>
        <mrna_strand>GTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251795" ref_strand="+" ref_description="SGN-E251795 [cLEG-15-P6]">
      <seq>tggcgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgctcccttgattctgtggaacctgctgcaggagttgattatgaaggacttgaggttgctaagcaatgtctatcataggcttttaagattgatccttcatctcatgcctcaagttcagactcattagtggacatattcagttcaggggaagcagctgaccaaagccaaagaagtgtcgatcttaggcatgatgtatcttcatcagatgctccttgtacatcttcaaggcagaacgccgaagataggacaaaagaagctcacagttttggtatatccaaagatgagctctctgggcagatttttgatgctcttgaaaaatctcactatttcagaagcttgcccgatggaaatgacgatcaggctcagttggataaggcatcaaggatattccatactgctttggaggagatgcaaaaatctggatgtactattttcaaccgaaacaacctcgctgagatcttaaaatcacaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5138" stop="16656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5438" g_stop="5509" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8538" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="290" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="324" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="461" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="528" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16299" g_stop="16356" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="586" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E251795" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5438" e_stop="5509"/>
          <exon e_start="8321" e_stop="8538"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGC</genome_strand>
        <mrna_strand>TGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTCCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCATAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGCTGACCAAAGCCAAAGAAGTGTCGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTCTGGGCAGATTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409343" ref_strand="+" ref_description="SGN-E409343 [PPI-13-H2]">
      <seq>cgaagctgaagacggattctcctctctcgcgtcgcatagttctctccttcttgcgcttccttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcgtctcatgcctcaagttcagattcattagtggacatattcagttcaggggaagcagttgaccgaagccaaataaatgtagatcttaggcatgatgtatcttcgtcaaatgctccttgtacatcttcagggcagaaggccgaagataggacaaaagaagctcacacttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaaactcactatttcagaagcttgccagatggaaacgacgatcaggctcagttggataaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5141" stop="12174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5441" g_stop="5509" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8538" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="287" r_length="218" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="321" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11874" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="432" r_length="111" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E409343" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5441" e_stop="5509"/>
          <exon e_start="8321" e_stop="8538"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCAT</genome_strand>
        <mrna_strand>CGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCGTCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCGAAGCCAAATAAATGTAGATCTTAGGCATGATGTATCTTCGTCAAATGCTCCTTGTACATCTTCAGGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCCAGATGGAAACGACGATCAGGCTCAGTTGGATAAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476270" ref_strand="+" ref_description="SGN-E476270 [cSTB-43-L8]">
      <seq>gacggattctcctctctcgcgtcgcatagttctctccttcttgcgctttcttgattctgtggaacctgctgcaggagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagattcattagtggacatattcagttcaggggaagcagttgaccaaagccaaataaatgtagatcttaggcatgatgcatcttcgtcaaatgctccttgtacatctgcagggcagaaggccgaagataggacaaaagaagctcacacttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaaactcactatttcagaagcttgccagatggaaatgacgatcaggctcagttggataaagcatcgaggatattccatactgctttggaggagatgcaaaaatctggatgtgcaatgttcaaccgaaacaaccttgctgagatcttaaaatcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5151" stop="14935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5451" g_stop="5509" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8538" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="277" r_length="218" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="311" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11900" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="448" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14571" g_stop="14635" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="513" r_length="65" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E476270" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5451" e_stop="5509"/>
          <exon e_start="8321" e_stop="8538"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11900"/>
          <exon e_start="14571" e_stop="14635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACA</genome_strand>
        <mrna_strand>GACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTTCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCAGGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAATAAATGTAGATCTTAGGCATGATGCATCTTCGTCAAATGCTCCTTGTACATCTGCAGGGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCCAGATGGAAATGACGATCAGGCTCAGTTGGATAAAGCATCGAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCTTAAAATCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443135" ref_strand="+" ref_description="SGN-E443135 [cSTA-36-K18]">
      <seq>tctcgcgtcgcatagttctctccttctggcgcttccttgattctgtggaacctgctgcatgagttgatgatgaaggacttgaggttgctaagcaatgtctatcagaggcttttaagattgatccttcatctcatgcctcaagttcagattcattagtggacatattcagttcaggggaagcagttgaccaaagccaaataaatgtagatcttaggcatgatgtatcttcatcaaatgctccttgtacaacttcagggcagaaggttgtagatgctatatatgcagatggatcacatttgctggccgaagataggacaaaagaagctcacacttttggtatatccaaagatgagctctttgggcagttttttgatgctcttgaaaaaactcactatttcagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="5165" stop="12130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5465" g_stop="5509" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8321" g_stop="8577" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="302" r_length="257" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8578" i_stop="9572" i_length="995">
            <donor d_prob="0.990" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9573" g_stop="9606" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="336" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11764" g_stop="11830" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="403" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E443135" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5465" e_stop="5509"/>
          <exon e_start="8321" e_stop="8577"/>
          <exon e_start="9573" e_stop="9606"/>
          <exon e_start="11764" e_stop="11830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTGGTAAATTCTTCCTATTCTCTTCTCTCTGATGGATCCATACACATTTTTCGCAGTTTATAAATTACACTTCTGTATTGATTAAACAGAAATGAGCGTTACAGACCCTGCTATTCAGAATTCCGACGCATGGTGCTAAGCTAAATAAGTGATGAACAGTTTATTTTGATAAAACGAAATCAATTTATCGGCTTACTACACTAAAATCAGAGATGATTAATTCTGCTAGTGCACTGCATAAATGTATCCAACGTGCTGATTAGAACGGGAAACTAAAACTTCATAGGGTAAGAGTTACTTTAGGGTGGGGGGAGGGGGTTTAGGATCAGGATTTTGTATTAATTGGTACAAGTTGATCTTCTCAGCATATTCAGTTTAGATCTGAAACTCATCAGTGAAGTATTAGTTTCTTGTATATGGTAATTGGTGGGTTTTGGGCCTGTTTACCATCTCTTATGCTTAGTAGGTTTAAAGGGAGTTGAGCATAAGAATTTGAAGTGACAGAAGGGAAGCTATTCTTCGAAAAGTATGTTGGGAGTAGGAGTATTTACTATGGACAGCATGGGTGCAACATTAGGGTCTTGCATATGGCAGTTGATGTGGTTCTAGAACCAGTGGTTAGAAGGCATTGTTTTCTTTTGAGAATGAGTAACGTACGAAGGATTGAACAGAACTGCAAATGGGAACTTTCGGCTGCCTATCTTTAGCATTTAAAATGTTGTATGGAGAGTTGTTAGGCGTTAATTCTCAGTTTATGAGCTAAATTACAATTTTGATTATATCCTATGGCGTGTAGTTGGTGTTGTAGGTGATTCCCTTTTTTTTTCTTCTTCTGATGATAATCATGGTGTCCAGGGTAGCTTGTGCGCACGTTGACTCATTCCATGGGATACCTGGTACCTCACACCAGCAACAAGTACTTGACCACCAATGTTAGAACAAATAGGAAAAAATCATCTAGTGTTTGGTCTTTGTTGGGATATGAACCAAGACCTCATGATGTTCAACCCACTTCATTGACCACTACGCCACACCCTTGAATGATTCTTACAAACAACAGGAACTGAATCCGGCTGTCTGGTTGAATCTGAGCATCGAGGATTAAAAAGTGGGGAAAAACAAGATGGTAGGCTAAAAGGATAAGCCAAAAATGACACATGCTACTTACTAAGTGATTTGTAAGAACAAACCAAACTTAGAGGGAATCATAAAAAGCGAGGATAAGGAGAAACTTAAAGTGAAAAAAAACTAGTCATGTTTCACAACCATCAGGCTGCCGCTTCTCATCCCACAGACAAAATCTGATCAGCCATACCACCATGTTTCCTCATCTAGCCTTTGTTCAGGGCACCCACTTCCTCCAACCTTTATCTTTTAGCATTTATAACCAACATACCTATCTCCAACCCTACCACTACTTCCTCTGCATTTCCCTGCCTTGTTAATAATATGTTCAATTCCAAGTTTGAAACCCTATCATTAAGCCTCCTTTTACTAATTACTTTGATCCATCATCCAAGTTTGACACTTAAGCTAAATGAATAAACGTTAAATATTGTAAATTTGGAATCCAATCCTAAAAGAAAATGTCCATCAGTACAATTATTCAACCTGCCCTCTTTTGCACTAGTTCACATCATCGTATTCTATCCTTCTATATAATCCCTTCACAAATTAACAAACCATCTCCCCACTTCCCAATGACGTCTCAAAAATCCCACAACATGCTTTAAAATAGTTGTCGTTTTGGGTTGGAAAGAATAGACGGTGGAGGTCAAAGGAAAGAATTCTTGGAAATGTGGAGTAGTGGGGGAAAGCAATAGGTCTTCTTCCAAAAAAATGGCCCCAACACAATCACTGGAGGCTTGAGTGATGGCCGTAATTTGGTTGCTAATCACCATTCCAATCTTATGATATACGGTGGAGTTAAGAAAATTGGAATATTTAGAACAAAGTAACAAGTAACAACTTAGCTCAAACATCTGGGACCATTTATGTGATTTAAAAGATACTACTGTTAGTCCAGCTTGTGTAACGTAAAGTTGGACATTTTATTTTCTTCTTTTTGATGTTGTAGTATCTGTTGCTAATTCTTCTTTTCAAATGAAATCCTCGTGATTTCACAAGTATTTTTATTGTAAAGAGATTAATGAAAAGGGACAAGAGGTAGCTCAAGTGGAAAGCACCTTGTGCCTCCAAGTTTGAGGTTGGGAGTTCGAGTCACCAAGCTGCTCTGTTTGACTTGTATGTGTCCCTGTTTTGAACATTCAGATTCTGCCAGATCAAGTTCTCTTACTTTCATGAAAGATAACCAGATTACTCTATACATAAAATAATGTTTTAGAAAGAATAAATGAAGTCTGGATGTAAGAGAGAGAGATCGTACAACTCAGTTTTAGGAACAAGAGACCAGTTTTGGCTTTCAACTTTTATGCCAGACCAAGTTATTTGCTCTAATAGGCGAGGGATCCAAACTAAAGTACTAGATGAGCACTAGTGTCCCCTTAGGGATTCCAAATACATTTATTGAAGCCAGTTGGCAGGTTAGACTGGAAATAATTATATCCCTAAGAAGTTTCAAGACTGCTTGACTGGGTAGCAGAACTGGGAAATACCAAATTATTTGGGATTTTGGAACCTCAATGCCTTAATAAAGCATTTTCATGTTACATTATTTGGTGCATGTTGTTTACGCTTTCTTGTTTCTCTTAATAATGTTTGATGTCCTGGTGTTTGTTCTGTCAGTTAGGAAGTTTTTTCAGTTCTTAGTATATCAATTTCGCGTTTACTGACAATGTCTCTCTTGTTTCACAGTGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTGGTTTCCCCATTCCTACCCCATTCTTCTTGATGTTTTTTTTCTCTTTATTTCATCTGTCAGTCTTCTCAGCTTGATTCTTTTGGATAGTTTCCCCTTATTTCATGTATTTCAGGTCCAGTTTCTATTCCTTATATCAGCATGTTTGCTTTCTCTTTTCTATATGGTGGCCTATCAGCTATAGACCTGTGAGGTTTAAATCCGCTGTGTTGTCTACATCTACATTTTCTCTTATTTTTATAACTGTTCACACAACAACAGTTTTCCTTCATGGTTGGGCAAAATTGAGATATTTGGGGCATGACCATGATCATTAAGTCACATTCCAGGGCATCTAGTAAGTAGTTAAGTTTGCTATGCACCTTACGTCTAATAATAGTCGTATCAGTAAATTACTCTGTTGAGATAAAGTGGTCCACACGATTGTCCTCTGTGGATGTCATATTCAGGTGTCTCAACTCTTATACTTGTGCTTGACCATGGTACTTAAGCATCAAAATGCAGCATAAAAAATAGGCACTTCATAAATTTATCATTACATTGCTGTCATATGCTCGCAAATTACGATGTAAAGAAGTTCTATTGGTTAGAAACTGTGTGCTTGATGCCACAGGGTTTTATGCATAAATTCAAATTGGATGTAAATTCATTGGGTATGTTGTTGTTGATGATGAAAGTTCACGCGAAATTTTGTCACTAGATTATCTTAGCTCAAAAATAGTTTTCTTTTCAAGGATGGGATGGTACAATCTAGCATGGAAATGATTGTCCAATGCTTACATCTGGAGTACTGTGTGCTTTACAGTACAGCCACGACAGAGGACTTACTGTGACAATATCTGTTGCCAGAGTCATTTTTTGTAATTTATTTAGGCCATACATTAGCTACCGTTAATCTCCTTTTTTTTTCTACCAATCTTTAATTGAATTATCGGTATGTGTTTCAACATTTTTGTGCAGCATTTAACTTTTTAACACATTGTATTTTTTTTTATCAGGCCGAAGATAGGACAAAAGAAGCTCACAGTTTTGGTAAGGCTAAACTCCAAATCTATGTTGCTCGAACTCTTCAAAAATGTCAATGTGCGAGTGTCGGGTTCTCTAGAAGTAGTGGATTTTTGGAGAATCCGACATGGGTACAGCATCAAGTGAAGAGTCAGCGCAACTTAGCTTCAAATTATAGGTTCCATTGAAGGGCTCTGTATAATGTCCTCAGATTCTTACTTTGACTAGTATACCACATTTAACCATCTTACTTTTAGTATTTCTTGTCCATATGTTTGTGCTGTCATCGTCAGTGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTTTACACTTTGTTAATGTCAAATGATTATTTGTTGTGTTTATAGTAACAAACTTTTCTACACTTTTTGCAATAAAAAGTGTAGTCATTTCTATTGGCAGTGAGTTTATTTCTCTTCCGGTCTCAATTTATGTGACGATGTTTGCCTGAATTCTTTTTAAGGAAAGAAAGATATTTGAAACTTGTGGCCTCTATACGTCATAAACATTTGTGTTGCTATATATTATCTCACCTCATTAAGAGTAAAATGGAAAGTTTAACAATTATTTCGAAATATTATATTTTCTTTGGGACAAACTAATAAGACGAGTGTGCCATATAAAATGGGACAGAGGGAGTAATACCTTAAATCTAGTTGCCTCTTTTTTATTTATTTTTTACATAGTTTCATAGTAATTTATTATATTATTGAAAACCATGAAAATAAGGTCAAGGACAATTTTTCCAATATACTTAAAATGTACAAAAATAAACTACTCAAAAAAAGCTAACCCAAATACCCCCTGAAGTGTTCTTGTCCCCATGTTGTAGCCAGGTTGCCCTGTATCTTTGTCTCCTGGCAATCTCTTCTAGCTATATCTTCGAACTCCATAGTAAGAGCCATTCTAGAAGCTATCTCTTATTCCTTTATCAAAAAAGAAGCTATCTCTTATTCCTGTAGAGCTCTATGTTCCTGCATCTCCTTCAGTTCAGCAAACTGGGAAAGAACCATTTGTTACTGAACATGTACATTGGTGTGACTTGTCTTACTCCACTCCTTCAATTCAGCTTTCAGAGCTTTCAGTTTAGCCACCAAAATATACTCAGGGCTACCACTGAAATTGAAAGAGCCCAACCCTCTCATTAAACCCTTCCGTATGCAGCCACCTGTTTTGATGCCGCATCCGTGTCGGATTCACCAAAAATACACTACTTCTGGCGGATCCAAAATGCACCCGTTGACATTTTTGAAGAGTCCGAGCAACATAGCATTAAAATCAGAGAAGTTGGTTCAGATGTATGTCTGGTTAGCTATAATTTGGAGAATTCTTAATTTTCCGTATCGACAATTTTTTTTGAATTGAAATGAAATAGGTAGAGTAAAGCGGAATATCTGTAGTAGATTCATATAAAGTATTCTCTACTTGTTGGGATTGAGGTTTAGTTTATTGATTATTAGATGTAACAAAATCATTCTTCTGGGCTACACATGTCTCGCTATTTTCCAGCCTTTCTTTAGAATGTGGAAGTGGGGTCTTTTAGTTCAAATGGCATACATGTAGGTTGCTGACATGGTTGCAAAGAACAAGTACAAGTCACTTGCTTTTCCTGTAGTCTTTTGTTCTGTTCCTGTTACTTTTTAGATGCATTTTCTTGTTCTTTGTTGAACCAAGTACGTTATCCGTATCTTTTAAACCTTGTTTTGCCTTCTATATATTTTCCTTTCACAACATATGTTTGCGGCAGTGGCTGGTAGAACTGCCTCTTTCCTGTTTGCCCTAGTCTCTTGCTTTATTCTAATCAACTCTTGTTGTTTATCATACAGGTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAG</genome_strand>
        <mrna_strand>TCTCGCGTCGCATAGTTCTCTCCTTCTGGCGCTTCCTTGATTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTGCTGCATGAGTTGATGATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGATTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAATAAATGTAGATCTTAGGCATGATGTATCTTCATCAAATGCTCCTTGTACAACTTCAGGGCAGAAGGTTGTAGATGCTATATATGCAGATGGATCACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGATAGGACAAAAGAAGCTCACACTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602250" ref_strand="+" ref_description="SGN-E602250 [55389]">
      <seq>caaagatgagctctttgggcagttttttgatgctcttgaaaaaactcactatttcagaagcttgccagatggaaacgacgatcaggctcagttggataaagcatcgaggatattccatactgctttggaggagatgcaaaaatctggatgtgcaatgttcaaccgaaacaaccttgctgagatcttaaaatcgcaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaattgcactttgtgaagataatgcagtttactattgcaacaggccagctgctttaacccagattcaccaatatgaagcagcagttcaagactgccaaaaatctattgcaatcaaccccaattatagcaaggcttatagtagattgggttttgtctattatgctcaagggaagtaccgtgatgccatagataagggattcacaaaaagcattgcagttggatcctaataatgattccgtcgaggaaaatatacgggtagcagaacaaaagttgaaagaaagagcaacagaggcagggggaatgaccagagctcagcctcttcaagccaatggacaagactcaaatcaccaggcctgctggggcaacctagaagtcatgcccatgccttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="11471" stop="19305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11771" g_stop="11900" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="197" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16299" g_stop="16398" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="297" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16946" g_stop="17109" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="461" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17110" i_stop="18337" i_length="1228">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18338" g_stop="18385" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="509" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99">
            <donor d_prob="0.959" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18485" g_stop="18535" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="562" r_length="53" r_score="0.863"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18536" i_stop="18926" i_length="391">
            <donor d_prob="0.898" d_score="0.85"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18927" g_stop="19005" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="645" r_length="83" r_score="0.861"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E602250" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11771" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16398"/>
          <exon e_start="16946" e_stop="17109"/>
          <exon e_start="18338" e_stop="18385"/>
          <exon e_start="18485" e_stop="18535"/>
          <exon e_start="18927" e_stop="19005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAGGTGCGTCATTATCACATTGATGGAAGAAAGTTACTATCGCTTTTCGCATGCAAAAATATTACTTCATCCATCCCAATTTATGTGATATCCTTCCTTTTTAGTCAGTTAAAAAAATGACACCTTTCTGTATTTAAAACATATCTGGTGGTTTTTGTTTGGGCCAGTGTTTTAGTTCTGCATCTTTGCATTGCCTGTTGGGCCTTCTTTGTTTATTTATTTTAAAGAAAGACATTGTTTGGTTGCTTATTGATATATAAAATCAGCCTCCTGGTCTTCTTTTTTTTTTTTTTTTTGAAAAAGTAACAGTTTAACTTTAAACTTTTCATTTTACCCTCAAGAGATGTTCTATAGTCACATAAATATCTATGAATTATTTTAGACCACAAGTATTATCGTTCTTTCTTTCTTGAACTCTGTTGCCTGTCAAAAACCATGGGATGAAGGAGTATTTGTTATGTCTATTTTTTTGAAAATTCTAACACCAATGAGATGAATCTTTCTAATTGTGAGTATCTCTAATTAAGATGAAGTTTTTGTGATGTATCAGGGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAGGTTGGATTAAGAATCTTTTCGCTTTATTAGTTGTTTAGTTGGTTTGGTTTTAGAATTTTTGAAATCTTGGTAGTTTGGAGTACATTATATTTTTGAATTTATTGAGAATGGTCATCTTTATGCTCCAACATCTTTGGCATGCGGCTACTGGTGTGGTTTCTAGTTCTGTATTTTAACTGATGAATGAAATTAACTGCTTTCTCATTTTCTATATTTTGTTTCAGTTAGTTTCATCAGTTCACCATGTCATTTTATTTGAAGTTCTTCCCATGATATGCTGACATAATATATAAGATGAAGCGTAGATTTGAAGGATGATTTCACAAACCTCAGCTAACGCTTAACATTACTGCAAATGTCTTAAATCGTGCTTCTTAGGTATTTGAACTGTCTGCCAGATTCACTTTGTATTAGGTTATATATAAGTCCTGTACTAGAAAAGGCAAAGGGAACGTTGGCTAGAAAAGACAGTTGGATCCTCCTACTTCATTAGTGAAAAGTTTACGATCATTTTACAGTCATGATTATGTTTGTGGGTACCCACTAAACCATAACGACAAAATTAAATAGAAGCAATTTTAAGAATTGGAAGGAAAAGATGAGTGGGAGAAACCACTATCTACATTTAATGCTTTTCAACCTCCCTTCATTCTTCGTCCTTGCCTTTTCCCTCATCAAGAGATGGTGAGTGAAGTCTTCCATCCCCAACCAATAAATGGATTAAAGTAGAATTTCAGTCAGAATCTGCGCTGGAAGTGATGGAACCCGCCTTGCACATGTTAACTGTGGGCATCGGCTGATATCTATGTCTACGAGGGATTAGGACAGCCGGGTACACTAAGCTCCTGCTATGTGCAGGTCTGGGGAATGGCCGGACCCCAAGGGTCTTTTGTAAGCAACCTTACCCTGCATTTCTACAAGAGGTTGTTTCCACAGCTTGAACCTGTGACCTCTTGGTCGCATGACAATAACTTTACCAGTAACGCCAAGGCTCCCTTCAACTTTCAACACCAACTGTGAATTATTATATGTTATATTATGGTGCTTAGTAATGCATCTGTCTATACATCGGTCTTGGTGAATTTTAAAAAGGTGTGCACTTTATCTCTGTAGAGTAAACTATGTTAGGAATTTAGATAATCTGTGCCAGTATACAAATATTTGGATTTTCTTCTCTAGTTAATCCGCAAAAAGAAATCTATATCTGACATAAAGCTTTGTTTATGAAGCATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGGGTTAGTTCCTATTATTAATTGGGGTTTTTAAGGTTATTAGCTGGAAAATGGTGTTTGCGGTATTATCTGAAGTATGACTCTCATATTTCAAATTTGTAGGTAGCAGAACAAAAGTTGAAAG-AAGAGCAACAGAGG-AGATGGAATGATCAGGTAACTGACAATTGTGGCATTACAGAAGAGCTTTACTTGATTTATTAAGTTGATAATTACAAGGTATGTAATTAACAACCAAATCATGTGCTGAGCTCAATACTCTGTAATAATCTGTCTGTCTGTGGTAGCACCATCTAATGCTGCATTTTCGTGTGAGGAACGACAACAAACATGTATATTCTCACTTGTAATCTTTCTGTTTAAAAGAAAGAATAGATTTCAATATTTTTTTCTTTTTGATAAGTAAAAAAATGGGAACATGTATCTGCAGTTCAGTGAGCTGACAAAGTGGTAATAAATTCAGCTCCACATATCTGAAAATTCAATCCTCAATTGTAGCAAGCATTAACCAAAAAACCCTATATTTCTTTCCTTGTCTATTTTGCAGAGCTCAACCTCTTCAAGCC-ATGGACAAGACTCAAATCACCA-GCCTGCTGGTGC-ACCTAGAAGTCATG-CCATGCCTCCAC</genome_strand>
        <mrna_strand>CAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAAACTCACTATTTCAGAAGCTTGCCAGATGGAAACGACGATCAGGCTCAGTTGGATAAAGCATCGAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCTTAAAATCGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGCTTTAACCCAGATTCACCAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGCAGTTGGATCCTAATAATGATTCCGTCGAGGAAAATATACGG...................................................................................................GTAGCAGAACAAAAGTTGAAAGAAAGAGCAACAGAGGCAGGGGGAATGACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAGCCTCTTCAAGCCAATGGACAAGACTCAAATCACCAGGCCTGCTGGGGCAACCTAGAAGTCATGCCCATGCCTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573113" ref_strand="+" ref_description="SGN-E573113 [32372]">
      <seq>tcggcacgaggcgacgatcaggctcagttggataagcatcgaggatattccatactgctttggaggagatgcaaaaatctggatgtgcaatgttcaaccgaaacaaccttgctgagatcttaaaatcgcaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaattgcactttgtgaagataatgcagtttactattgcaacagggcatctgctttaacccagattcaccaatatgaagcagcagttcaagactgccaaaaatctattgcaatcaaccccaattatagcaaggcttatagtagattgggttttgtctattatgctcaagggaagtaccgtgatgccatagataagggattcacaaaagcattgcagttggatcctaataatgattccgtcaaggaaaatatacgggtagcagaacaaaagttgaaagaagagcaacagaggagggggaatgaccaggtaactgacaattgtggcattacagaagaactttactagattattaagttgacaattacaaggtatgcaattaacaaccaaatcatgtgctgagctcaatagcctgtacctgtaataatctgtctgcagtagcaccatctaatgctgcatttttcgtgtgaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="11547" stop="18998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11835" g_stop="11900" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="132" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16299" g_stop="16398" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="232" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16946" g_stop="17109" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="396" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17110" i_stop="18338" i_length="1229">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18339" g_stop="18385" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="443" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18485" g_stop="18698" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="659" r_length="216" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E573113" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11835" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16398"/>
          <exon e_start="16946" e_stop="17109"/>
          <exon e_start="18339" e_stop="18385"/>
          <exon e_start="18485" e_stop="18698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAGGTGCGTCATTATCACATTGATGGAAGAAAGTTACTATCGCTTTTCGCATGCAAAAATATTACTTCATCCATCCCAATTTATGTGATATCCTTCCTTTTTAGTCAGTTAAAAAAATGACACCTTTCTGTATTTAAAACATATCTGGTGGTTTTTGTTTGGGCCAGTGTTTTAGTTCTGCATCTTTGCATTGCCTGTTGGGCCTTCTTTGTTTATTTATTTTAAAGAAAGACATTGTTTGGTTGCTTATTGATATATAAAATCAGCCTCCTGGTCTTCTTTTTTTTTTTTTTTTTGAAAAAGTAACAGTTTAACTTTAAACTTTTCATTTTACCCTCAAGAGATGTTCTATAGTCACATAAATATCTATGAATTATTTTAGACCACAAGTATTATCGTTCTTTCTTTCTTGAACTCTGTTGCCTGTCAAAAACCATGGGATGAAGGAGTATTTGTTATGTCTATTTTTTTGAAAATTCTAACACCAATGAGATGAATCTTTCTAATTGTGAGTATCTCTAATTAAGATGAAGTTTTTGTGATGTATCAGGGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAGGTTGGATTAAGAATCTTTTCGCTTTATTAGTTGTTTAGTTGGTTTGGTTTTAGAATTTTTGAAATCTTGGTAGTTTGGAGTACATTATATTTTTGAATTTATTGAGAATGGTCATCTTTATGCTCCAACATCTTTGGCATGCGGCTACTGGTGTGGTTTCTAGTTCTGTATTTTAACTGATGAATGAAATTAACTGCTTTCTCATTTTCTATATTTTGTTTCAGTTAGTTTCATCAGTTCACCATGTCATTTTATTTGAAGTTCTTCCCATGATATGCTGACATAATATATAAGATGAAGCGTAGATTTGAAGGATGATTTCACAAACCTCAGCTAACGCTTAACATTACTGCAAATGTCTTAAATCGTGCTTCTTAGGTATTTGAACTGTCTGCCAGATTCACTTTGTATTAGGTTATATATAAGTCCTGTACTAGAAAAGGCAAAGGGAACGTTGGCTAGAAAAGACAGTTGGATCCTCCTACTTCATTAGTGAAAAGTTTACGATCATTTTACAGTCATGATTATGTTTGTGGGTACCCACTAAACCATAACGACAAAATTAAATAGAAGCAATTTTAAGAATTGGAAGGAAAAGATGAGTGGGAGAAACCACTATCTACATTTAATGCTTTTCAACCTCCCTTCATTCTTCGTCCTTGCCTTTTCCCTCATCAAGAGATGGTGAGTGAAGTCTTCCATCCCCAACCAATAAATGGATTAAAGTAGAATTTCAGTCAGAATCTGCGCTGGAAGTGATGGAACCCGCCTTGCACATGTTAACTGTGGGCATCGGCTGATATCTATGTCTACGAGGGATTAGGACAGCCGGGTACACTAAGCTCCTGCTATGTGCAGGTCTGGGGAATGGCCGGACCCCAAGGGTCTTTTGTAAGCAACCTTACCCTGCATTTCTACAAGAGGTTGTTTCCACAGCTTGAACCTGTGACCTCTTGGTCGCATGACAATAACTTTACCAGTAACGCCAAGGCTCCCTTCAACTTTCAACACCAACTGTGAATTATTATATGTTATATTATGGTGCTTAGTAATGCATCTGTCTATACATCGGTCTTGGTGAATTTTAAAAAGGTGTGCACTTTATCTCTGTAGAGTAAACTATGTTAGGAATTTAGATAATCTGTGCCAGTATACAAATATTTGGATTTTCTTCTCTAGTTAATCCGCAAAAAGAAATCTATATCTGACATAAAGCTTTGTTTATGAAGCATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGGGTTAGTTCCTATTATTAATTGGGGTTTTTAAGGTTATTAGCTGGAAAATGGTGTTTGCGGTATTATCTGAAGTATGACTCTCATATTTCAAATTTGTAGGTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAGGTAACTGACAATTGTGGCATTACAGAAGAGCTTTACTTGATTTATTAAGTTGATAATTACAAGGTATGTAATTAACAACCAAATCATGTGCTGAGCTCAATACTCTGTA-AT-AATCTGTCTGTCTGTGGTAGCACCATCTAATGCTGCA-TTTTCGTGTGAGGAA</genome_strand>
        <mrna_strand>TCGGCACGAGGCGACGATCAGGCTCAGTTGGATAA-GCATCGAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCTTAAAATCGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGCTTTAACCCAGATTCACCAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGTTGGATCCTAATAATGATTCCGTCAAGGAAAATATACGG...................................................................................................GTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGGGGGAATGACCAGGTAACTGACAATTGTGGCATTACAGAAGAACTTTACTAGA-TTATTAAGTTGACAATTACAAGGTATGCAATTAACAACCAAATCATGTGCTGAGCTCAATAGCCTGTACCTGTAATAATCTGTCTGCAGTAGCACCATCTAATGCTGCATTTTTCGTGTGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735880" ref_strand="+" ref_description="SGN-E735880 [LC03CA10]">
      <seq>cgatcaaggatattccatactgctttggaggagatgcaaaaatctggatgtactattttcaaccgaaacaacctcgctgagatcttaaaatcacaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaattgcactttgtgaagataatgcagtttactattgcaacagggcagctgctttaacccagatccaacaatatgaagcagcagttcaagactgccaaaaatctattgcaatcaaccccaattatagcaaggcttatagtagattgggttttgtctattatgctcaagggaagtaccgtgatgccatagataagggattcacaaaagcattgcagttggatcctaataatgattccatcaaggaaaatatacgggtagcagaacaaaagttgaaagaagagcaacagaggagatggaatgatcagagctcaacctcttcaagccatggacaagactcaaatcaccagcctgctggtgcacctagaagtcatgccatgcctccaccatttggatcagtgtcatttgatgggaatagcattcctgatttgacgaacgtgtttatgaacatgacaagagatgcattccaagggcagcatggtccagaccggccagaaggaagcaacaacactgattcaaccaatgatcctgttataagaataagcaggagcgtcaatcttggttttggtgaacagatgcctgaggaattgacaggaaccttaaggtctgttatggagatgttttcaagagctcaacctcctgagaatcctcggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="11571" stop="19573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11871" g_stop="11900" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="97" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16299" g_stop="16398" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="197" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16946" g_stop="17109" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="361" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17110" i_stop="18338" i_length="1229">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18339" g_stop="18385" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="408" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18485" g_stop="18535" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="459" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18536" i_stop="18926" i_length="391">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18927" g_stop="19273" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="806" r_length="347" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E735880" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11871" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16398"/>
          <exon e_start="16946" e_stop="17109"/>
          <exon e_start="18339" e_stop="18385"/>
          <exon e_start="18485" e_stop="18535"/>
          <exon e_start="18927" e_stop="19273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAGGTGCGTCATTATCACATTGATGGAAGAAAGTTACTATCGCTTTTCGCATGCAAAAATATTACTTCATCCATCCCAATTTATGTGATATCCTTCCTTTTTAGTCAGTTAAAAAAATGACACCTTTCTGTATTTAAAACATATCTGGTGGTTTTTGTTTGGGCCAGTGTTTTAGTTCTGCATCTTTGCATTGCCTGTTGGGCCTTCTTTGTTTATTTATTTTAAAGAAAGACATTGTTTGGTTGCTTATTGATATATAAAATCAGCCTCCTGGTCTTCTTTTTTTTTTTTTTTTTGAAAAAGTAACAGTTTAACTTTAAACTTTTCATTTTACCCTCAAGAGATGTTCTATAGTCACATAAATATCTATGAATTATTTTAGACCACAAGTATTATCGTTCTTTCTTTCTTGAACTCTGTTGCCTGTCAAAAACCATGGGATGAAGGAGTATTTGTTATGTCTATTTTTTTGAAAATTCTAACACCAATGAGATGAATCTTTCTAATTGTGAGTATCTCTAATTAAGATGAAGTTTTTGTGATGTATCAGGGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAGGTTGGATTAAGAATCTTTTCGCTTTATTAGTTGTTTAGTTGGTTTGGTTTTAGAATTTTTGAAATCTTGGTAGTTTGGAGTACATTATATTTTTGAATTTATTGAGAATGGTCATCTTTATGCTCCAACATCTTTGGCATGCGGCTACTGGTGTGGTTTCTAGTTCTGTATTTTAACTGATGAATGAAATTAACTGCTTTCTCATTTTCTATATTTTGTTTCAGTTAGTTTCATCAGTTCACCATGTCATTTTATTTGAAGTTCTTCCCATGATATGCTGACATAATATATAAGATGAAGCGTAGATTTGAAGGATGATTTCACAAACCTCAGCTAACGCTTAACATTACTGCAAATGTCTTAAATCGTGCTTCTTAGGTATTTGAACTGTCTGCCAGATTCACTTTGTATTAGGTTATATATAAGTCCTGTACTAGAAAAGGCAAAGGGAACGTTGGCTAGAAAAGACAGTTGGATCCTCCTACTTCATTAGTGAAAAGTTTACGATCATTTTACAGTCATGATTATGTTTGTGGGTACCCACTAAACCATAACGACAAAATTAAATAGAAGCAATTTTAAGAATTGGAAGGAAAAGATGAGTGGGAGAAACCACTATCTACATTTAATGCTTTTCAACCTCCCTTCATTCTTCGTCCTTGCCTTTTCCCTCATCAAGAGATGGTGAGTGAAGTCTTCCATCCCCAACCAATAAATGGATTAAAGTAGAATTTCAGTCAGAATCTGCGCTGGAAGTGATGGAACCCGCCTTGCACATGTTAACTGTGGGCATCGGCTGATATCTATGTCTACGAGGGATTAGGACAGCCGGGTACACTAAGCTCCTGCTATGTGCAGGTCTGGGGAATGGCCGGACCCCAAGGGTCTTTTGTAAGCAACCTTACCCTGCATTTCTACAAGAGGTTGTTTCCACAGCTTGAACCTGTGACCTCTTGGTCGCATGACAATAACTTTACCAGTAACGCCAAGGCTCCCTTCAACTTTCAACACCAACTGTGAATTATTATATGTTATATTATGGTGCTTAGTAATGCATCTGTCTATACATCGGTCTTGGTGAATTTTAAAAAGGTGTGCACTTTATCTCTGTAGAGTAAACTATGTTAGGAATTTAGATAATCTGTGCCAGTATACAAATATTTGGATTTTCTTCTCTAGTTAATCCGCAAAAAGAAATCTATATCTGACATAAAGCTTTGTTTATGAAGCATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGGGTTAGTTCCTATTATTAATTGGGGTTTTTAAGGTTATTAGCTGGAAAATGGTGTTTGCGGTATTATCTGAAGTATGACTCTCATATTTCAAATTTGTAGGTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAGGTAACTGACAATTGTGGCATTACAGAAGAGCTTTACTTGATTTATTAAGTTGATAATTACAAGGTATGTAATTAACAACCAAATCATGTGCTGAGCTCAATACTCTGTAATAATCTGTCTGTCTGTGGTAGCACCATCTAATGCTGCATTTTCGTGTGAGGAACGACAACAAACATGTATATTCTCACTTGTAATCTTTCTGTTTAAAAGAAAGAATAGATTTCAATATTTTTTTCTTTTTGATAAGTAAAAAAATGGGAACATGTATCTGCAGTTCAGTGAGCTGACAAAGTGGTAATAAATTCAGCTCCACATATCTGAAAATTCAATCCTCAATTGTAGCAAGCATTAACCAAAAAACCCTATATTTCTTTCCTTGTCTATTTTGCAGAGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTATAAGAATAAGCAGGAGCGTCAATCTTGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCGGGA</genome_strand>
        <mrna_strand>CGATCAAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGG...................................................................................................GTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTATAAGAATAAGCAGGAGCGTCAATCTTGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAAGAGCTCAACCTCCTGAGAATCCTCGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736588" ref_strand="+" ref_description="SGN-E736588 [LC06BD11]">
      <seq>catctaggatattccatactgctttggaggagatgcaaaaatctggatgtactattttcaaccgaaacaacctcgctgagatcttaaaatcacaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaattgcactttgtgaagataatgcagtttactattgcaacagggcagctgctttaacccagatccaacaatatgaagcagcagttcaagactgccaaaaatctattgcaatcaaccccaattatagcaaggcttatagtagattgggttttgtctattatgctcaagggaagtaccgtgatgccatagataagggattcacaaaagcattgcagttggatcctaataatgattccatcaaggaaaatatacgggtagcagaacaaaagttgaaagaagagcaacagaggagatggaatgatcagagctcaacctcttcaagccatggacaagactcaaatcaccagcctgctggtgcacctagaagtcatgccatgcctccaccatttggatcagtgtcatttgatgggaatagcattcctgatttgacgaacgtgtttatgaacatgacaagagatgcattccaagggcagcatggtccagaccggccagaaggaagcaacaacactgattcaaccaatgatcctgttataagaataagcaggagcgtcaatcttggttttggtgaacagatgcctgaggaattgacaggaaccttaaggtctgttatggagatgttttcaggagctcaacctcctgagaatcctcgggataacatgaatggaagatcaacacccaattgagggcatttatgttagtgaaactcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="11572" stop="19627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11872" g_stop="11900" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="96" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16299" g_stop="16398" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="196" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16946" g_stop="17109" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="360" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17110" i_stop="18338" i_length="1229">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18339" g_stop="18385" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="407" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18485" g_stop="18535" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="458" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18536" i_stop="18926" i_length="391">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18927" g_stop="19328" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="861" r_length="403" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E736588" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11872" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16398"/>
          <exon e_start="16946" e_stop="17109"/>
          <exon e_start="18339" e_stop="18385"/>
          <exon e_start="18485" e_stop="18535"/>
          <exon e_start="18927" e_stop="19328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAGGTGCGTCATTATCACATTGATGGAAGAAAGTTACTATCGCTTTTCGCATGCAAAAATATTACTTCATCCATCCCAATTTATGTGATATCCTTCCTTTTTAGTCAGTTAAAAAAATGACACCTTTCTGTATTTAAAACATATCTGGTGGTTTTTGTTTGGGCCAGTGTTTTAGTTCTGCATCTTTGCATTGCCTGTTGGGCCTTCTTTGTTTATTTATTTTAAAGAAAGACATTGTTTGGTTGCTTATTGATATATAAAATCAGCCTCCTGGTCTTCTTTTTTTTTTTTTTTTTGAAAAAGTAACAGTTTAACTTTAAACTTTTCATTTTACCCTCAAGAGATGTTCTATAGTCACATAAATATCTATGAATTATTTTAGACCACAAGTATTATCGTTCTTTCTTTCTTGAACTCTGTTGCCTGTCAAAAACCATGGGATGAAGGAGTATTTGTTATGTCTATTTTTTTGAAAATTCTAACACCAATGAGATGAATCTTTCTAATTGTGAGTATCTCTAATTAAGATGAAGTTTTTGTGATGTATCAGGGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAGGTTGGATTAAGAATCTTTTCGCTTTATTAGTTGTTTAGTTGGTTTGGTTTTAGAATTTTTGAAATCTTGGTAGTTTGGAGTACATTATATTTTTGAATTTATTGAGAATGGTCATCTTTATGCTCCAACATCTTTGGCATGCGGCTACTGGTGTGGTTTCTAGTTCTGTATTTTAACTGATGAATGAAATTAACTGCTTTCTCATTTTCTATATTTTGTTTCAGTTAGTTTCATCAGTTCACCATGTCATTTTATTTGAAGTTCTTCCCATGATATGCTGACATAATATATAAGATGAAGCGTAGATTTGAAGGATGATTTCACAAACCTCAGCTAACGCTTAACATTACTGCAAATGTCTTAAATCGTGCTTCTTAGGTATTTGAACTGTCTGCCAGATTCACTTTGTATTAGGTTATATATAAGTCCTGTACTAGAAAAGGCAAAGGGAACGTTGGCTAGAAAAGACAGTTGGATCCTCCTACTTCATTAGTGAAAAGTTTACGATCATTTTACAGTCATGATTATGTTTGTGGGTACCCACTAAACCATAACGACAAAATTAAATAGAAGCAATTTTAAGAATTGGAAGGAAAAGATGAGTGGGAGAAACCACTATCTACATTTAATGCTTTTCAACCTCCCTTCATTCTTCGTCCTTGCCTTTTCCCTCATCAAGAGATGGTGAGTGAAGTCTTCCATCCCCAACCAATAAATGGATTAAAGTAGAATTTCAGTCAGAATCTGCGCTGGAAGTGATGGAACCCGCCTTGCACATGTTAACTGTGGGCATCGGCTGATATCTATGTCTACGAGGGATTAGGACAGCCGGGTACACTAAGCTCCTGCTATGTGCAGGTCTGGGGAATGGCCGGACCCCAAGGGTCTTTTGTAAGCAACCTTACCCTGCATTTCTACAAGAGGTTGTTTCCACAGCTTGAACCTGTGACCTCTTGGTCGCATGACAATAACTTTACCAGTAACGCCAAGGCTCCCTTCAACTTTCAACACCAACTGTGAATTATTATATGTTATATTATGGTGCTTAGTAATGCATCTGTCTATACATCGGTCTTGGTGAATTTTAAAAAGGTGTGCACTTTATCTCTGTAGAGTAAACTATGTTAGGAATTTAGATAATCTGTGCCAGTATACAAATATTTGGATTTTCTTCTCTAGTTAATCCGCAAAAAGAAATCTATATCTGACATAAAGCTTTGTTTATGAAGCATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGGGTTAGTTCCTATTATTAATTGGGGTTTTTAAGGTTATTAGCTGGAAAATGGTGTTTGCGGTATTATCTGAAGTATGACTCTCATATTTCAAATTTGTAGGTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAGGTAACTGACAATTGTGGCATTACAGAAGAGCTTTACTTGATTTATTAAGTTGATAATTACAAGGTATGTAATTAACAACCAAATCATGTGCTGAGCTCAATACTCTGTAATAATCTGTCTGTCTGTGGTAGCACCATCTAATGCTGCATTTTCGTGTGAGGAACGACAACAAACATGTATATTCTCACTTGTAATCTTTCTGTTTAAAAGAAAGAATAGATTTCAATATTTTTTTCTTTTTGATAAGTAAAAAAATGGGAACATGTATCTGCAGTTCAGTGAGCTGACAAAGTGGTAATAAATTCAGCTCCACATATCTGAAAATTCAATCCTCAATTGTAGCAAGCATTAACCAAAAAACCCTATATTTCTTTCCTTGTCTATTTTGCAGAGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTATAAGAATAAGCAGGAGCGTCAATCTTGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCGGGATAACATGAATGGAAGATCAACACCAAATTGAGGCCATTTATGTTAGTG-AACTCAA</genome_strand>
        <mrna_strand>CATCTAGGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGG...................................................................................................GTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTATAAGAATAAGCAGGAGCGTCAATCTTGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCGGGATAACATGAATGGAAGATCAACACCCAATTGAGGGCATTTATGTTAGTGAAACTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599547" ref_strand="+" ref_description="SGN-E599547 [52537]">
      <seq>ggatattccatactgctttggaggagatgcaaaaatctggatgtgcaatgttcaaccgaaacaaccttgctgagatcttaaaatcgcaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaattgcactttgtgaagataatgcagtttactattgcaacagggcagctgctttaacccagattcaccaatatgaagcagcagttcaagactgccaaaaatctattgcaatcaaccccaattatagcaaggcttatagtagattgggttttgtctattatgctcaagggaagtaccgtgatgccatagataagggattcacaaaagcattgcagttggatcctaataatgattccgtcaaggaaaatatacgggtagcagaacaaaagttgaaagaagagcaacagaggagggggaatgaccagagctcaacctcttcaagccatggacaagactcaaatcaccagcctgctgaggcacctagaagtcatgccatgccttcaccatttggatcaatgtcatttgatggaaatggcattcctgatttgacgaacatgtttatgaacatgccaagagatgcattccaagggcagcatggtccaaacgggccagaaagaagcaacaacgctgattcaaccaatgagcccattataagaataaccaggagtgtcaatctcggtttggtgaacagatgcctgaggaattgacaggaaccttaaggtctgttatggaggatgttttcaggagctcaaacttcctgagaatcctcgggataaacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="11578" stop="19581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11878" g_stop="11900" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="90" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16299" g_stop="16398" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="190" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16946" g_stop="17109" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="354" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17110" i_stop="18338" i_length="1229">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18339" g_stop="18385" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="401" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18485" g_stop="18535" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="452" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18536" i_stop="18926" i_length="391">
            <donor d_prob="0.898" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18927" g_stop="19281" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="809" r_length="357" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E599547" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11878" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16398"/>
          <exon e_start="16946" e_stop="17109"/>
          <exon e_start="18339" e_stop="18385"/>
          <exon e_start="18485" e_stop="18535"/>
          <exon e_start="18927" e_stop="19281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATTCCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAGGTGCGTCATTATCACATTGATGGAAGAAAGTTACTATCGCTTTTCGCATGCAAAAATATTACTTCATCCATCCCAATTTATGTGATATCCTTCCTTTTTAGTCAGTTAAAAAAATGACACCTTTCTGTATTTAAAACATATCTGGTGGTTTTTGTTTGGGCCAGTGTTTTAGTTCTGCATCTTTGCATTGCCTGTTGGGCCTTCTTTGTTTATTTATTTTAAAGAAAGACATTGTTTGGTTGCTTATTGATATATAAAATCAGCCTCCTGGTCTTCTTTTTTTTTTTTTTTTTGAAAAAGTAACAGTTTAACTTTAAACTTTTCATTTTACCCTCAAGAGATGTTCTATAGTCACATAAATATCTATGAATTATTTTAGACCACAAGTATTATCGTTCTTTCTTTCTTGAACTCTGTTGCCTGTCAAAAACCATGGGATGAAGGAGTATTTGTTATGTCTATTTTTTTGAAAATTCTAACACCAATGAGATGAATCTTTCTAATTGTGAGTATCTCTAATTAAGATGAAGTTTTTGTGATGTATCAGGGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAGGTTGGATTAAGAATCTTTTCGCTTTATTAGTTGTTTAGTTGGTTTGGTTTTAGAATTTTTGAAATCTTGGTAGTTTGGAGTACATTATATTTTTGAATTTATTGAGAATGGTCATCTTTATGCTCCAACATCTTTGGCATGCGGCTACTGGTGTGGTTTCTAGTTCTGTATTTTAACTGATGAATGAAATTAACTGCTTTCTCATTTTCTATATTTTGTTTCAGTTAGTTTCATCAGTTCACCATGTCATTTTATTTGAAGTTCTTCCCATGATATGCTGACATAATATATAAGATGAAGCGTAGATTTGAAGGATGATTTCACAAACCTCAGCTAACGCTTAACATTACTGCAAATGTCTTAAATCGTGCTTCTTAGGTATTTGAACTGTCTGCCAGATTCACTTTGTATTAGGTTATATATAAGTCCTGTACTAGAAAAGGCAAAGGGAACGTTGGCTAGAAAAGACAGTTGGATCCTCCTACTTCATTAGTGAAAAGTTTACGATCATTTTACAGTCATGATTATGTTTGTGGGTACCCACTAAACCATAACGACAAAATTAAATAGAAGCAATTTTAAGAATTGGAAGGAAAAGATGAGTGGGAGAAACCACTATCTACATTTAATGCTTTTCAACCTCCCTTCATTCTTCGTCCTTGCCTTTTCCCTCATCAAGAGATGGTGAGTGAAGTCTTCCATCCCCAACCAATAAATGGATTAAAGTAGAATTTCAGTCAGAATCTGCGCTGGAAGTGATGGAACCCGCCTTGCACATGTTAACTGTGGGCATCGGCTGATATCTATGTCTACGAGGGATTAGGACAGCCGGGTACACTAAGCTCCTGCTATGTGCAGGTCTGGGGAATGGCCGGACCCCAAGGGTCTTTTGTAAGCAACCTTACCCTGCATTTCTACAAGAGGTTGTTTCCACAGCTTGAACCTGTGACCTCTTGGTCGCATGACAATAACTTTACCAGTAACGCCAAGGCTCCCTTCAACTTTCAACACCAACTGTGAATTATTATATGTTATATTATGGTGCTTAGTAATGCATCTGTCTATACATCGGTCTTGGTGAATTTTAAAAAGGTGTGCACTTTATCTCTGTAGAGTAAACTATGTTAGGAATTTAGATAATCTGTGCCAGTATACAAATATTTGGATTTTCTTCTCTAGTTAATCCGCAAAAAGAAATCTATATCTGACATAAAGCTTTGTTTATGAAGCATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGGGTTAGTTCCTATTATTAATTGGGGTTTTTAAGGTTATTAGCTGGAAAATGGTGTTTGCGGTATTATCTGAAGTATGACTCTCATATTTCAAATTTGTAGGTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAGGTAACTGACAATTGTGGCATTACAGAAGAGCTTTACTTGATTTATTAAGTTGATAATTACAAGGTATGTAATTAACAACCAAATCATGTGCTGAGCTCAATACTCTGTAATAATCTGTCTGTCTGTGGTAGCACCATCTAATGCTGCATTTTCGTGTGAGGAACGACAACAAACATGTATATTCTCACTTGTAATCTTTCTGTTTAAAAGAAAGAATAGATTTCAATATTTTTTTCTTTTTGATAAGTAAAAAAATGGGAACATGTATCTGCAGTTCAGTGAGCTGACAAAGTGGTAATAAATTCAGCTCCACATATCTGAAAATTCAATCCTCAATTGTAGCAAGCATTAACCAAAAAACCCTATATTTCTTTCCTTGTCTATTTTGCAGAGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTATAAGAATAAGCAGGAGCGTCAATCTTGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGA-GATGTTTTCAGGAGCTC-AACCTCCTGAGAATCCTCGGGAT-AACATGA</genome_strand>
        <mrna_strand>GGATATTCCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCTTAAAATCGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCTGCTTTAACCCAGATTCACCAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGTTGGATCCTAATAATGATTCCGTCAAGGAAAATATACGG...................................................................................................GTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGGGGGAATGACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGAGGCACCTAGAAGTCATGCCATGCCTTCACCATTTGGATCAATGTCATTTGATGGAAATGGCATTCCTGATTTGACGAACATGTTTATGAACATGCCAAGAGATGCATTCCAAGGGCAGCATGGTCCAAACGGGCCAGAAAGAAGCAACAACGCTGATTCAACCAATGAGCCCATTATAAGAATAACCAGGAGTGTCAATCTCGG-TTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGGATGTTTTCAGGAGCTCAAACTTCCTGAGAATCCTCGGGATAAACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574528" ref_strand="+" ref_description="SGN-E574528 [34010]">
      <seq>ccatactgctttggaggagatgcaaaaatctggatgtgcattgttcaaccgaaacaaccttgctgagatcttaaaatcgcaaggtaataaagcgatgcagtcaacaactttaccctgatgctattgagctgtattcttttgcaattgcactttgtgaagataatgcagtttactattgcaacaggccagctgctttaacccagattcaccaatatgaagcagcagttcaagactgcgcaaacaatctattgcaatcaagcccaattatagcaaggcttataagtagattgggttttgtctattatgctcaagggaagtaccgtgatgccatagataagggattcaccaaaagcattgcagttggatcctaatacatgattcgtcaggaaaatatacgggtagcagaacaaaagttggaaacgaagagcaacagacgagggggaatgaccagaagctcaagctcttcaagcccatgggaccagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="11585" stop="18835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11885" g_stop="11900" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14571" g_stop="14637" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="83" r_length="67" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16299" g_stop="16398" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="184" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16946" g_stop="17109" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="352" r_length="168" r_score="0.927"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17110" i_stop="18338" i_length="1229">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18339" g_stop="18385" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="398" r_length="46" r_score="0.894"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99">
            <donor d_prob="0.959" d_score="0.89"/>
            <acceptor a_prob="1.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18485" g_stop="18535" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="451" r_length="53" r_score="0.843"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E574528" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11885" e_stop="11900"/>
          <exon e_start="14571" e_stop="14637"/>
          <exon e_start="16299" e_stop="16398"/>
          <exon e_start="16946" e_stop="17109"/>
          <exon e_start="18339" e_stop="18385"/>
          <exon e_start="18485" e_stop="18535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATACTGCTTTGGAGGTATATACTGACACACAAGTTATTTTGTTCACGATTCGACAACTGCGATGCATGAGTATTCTGAACTCGATGGTATTGGTTAAGGAAGCACAGTATTTCATCTCACACCTTTTTTTACCCTTTTTCTGTTCAACCTTGCAGAGTAATCTGTGAACAATACTTCATAAATGGTATTTTTTATTCAAGAATTGACATCAAAGTATTTTCTTTCACCGTGTGATGCAAAATGCTTCCTAGATTTGGAAGGCTCATATTTCCTTTATTTGACATCATTATCACCGATGATAAAATTTCCCTGTGATGATGTAAGAAAGAACACAAAAAAGTTTGATTAGAAAAAAAGACCGATGTTAAGAAGGGGGAACTCATTGTTGTTAAAGACTCGCGTGAGAGTGCTGATGCCCTAGAGAATGCAGGTTGTGATTTGCTTCGCTTAGACAATGCATCAATTCAGGCACCAAGGGGCTAAGACCTGGGCCTCATCTCCACACCTATTTCACTTAAATACAACTTCTAATTCTTTGTCCAAAAATGTAAATTTTGTGAGGCAACTATACATAAATACCCTCAAAGTAGTCGTCTTTTTTCTGTTACAACCTTAAGCTATGCAGGGTACCCCTCTGAATCATATAAACTGGTACTAAGAGCCCCCTTTTACGCCTACATGCCATGGACATGGAGTGTTTTGCACTTTCCAGCAGCACATGGGAGGAGCATTTCAAGCGAACTATCATCTGGTTAGGGCGGAGGATAGTTTCCCTTTTGAATCGGTCTGGATACCTAAGGTACTGATGAAGGTGTGCTTCTTCACGTTGTTGGCGACTAGAGTGGTTACTGATGGCGGAGTTTCTTAGGAAGAGAAAGGTTGTTCATATAAGGTGGTGTTTCTTGTGTAAGGAGGCAAGTGAGGATGTGGATCATATTTTGTTACATTTGCAAAATTGTCACGATGTGATGGTGGGATATCTTTAGTTGGTTTTGGTGTTTCTTGGGTTATGCCGAAATCCGTGAAGGAGTTAATGTTCAGTTGAAGAGTGGGACTAAGAGAAGAAGGCACAAGACTTAGAATGTTGCTTCTCTTGGTCTTCTTTTTGATCATCTGGAAGGAGAGAAATAAGAGAGCTTTTGAGGGGGTGGCGATGAGCTTTGCCTAATTGAGGAGAGTTGCTGATCCCTTATATTCTTTTGGTGCACTCGTATAGTTCATGTTTATATAGAGGATTGGGTGTCTTTTGAAGAGGATCATATTTTTGTAGATCTCTCTCTTTTGGTATACCTCCTGTATACAGCCATGTGTCTTTGTTATTATCTTTACAAGGAGAAGAAGAAAACAAAGAAAAGGAGAAGACATTGAAAAAAATAATTAAATCTCTTTTTACGTGGTAAAACATGATTGTTGTGTGACAAGAGCTTTTTATAAAACATTCGTAATCTCCCGTAGGGTAATGCTCTGATGAGATTGTAAGTGACCTATGCTCATCATTTATTTGATGATGAGCCTTTTGTGAATACACAGTTACCTTTTTCTCAAATGAAATTCCCACACCAACCTCAGAGCATAGAGGTTATCTATTGGCATACATTGCTTATGAAGCAAGACTGGCTATCTTTGAAACTCGGTTACTTCCCAAACATGGAAATCCCTCCTGAATCACCTTATATCTCCTAAATTTGCCGAAATGTCATCTCCTTTTGACATGATACCCTATAAATGCTCAGGAATTCAGTTTTCAAGAAGTAATGCCCACACCAGTTGTGTCCCCAAAAGCTAACCCTTCTCCTATCTCCTATCTCCTATCCTAAATGATAGGAGAATATTGCCATAAATTCTACCCATCCTTTCATAATATTCCTCCACAATCCGCTACTACAAGGCATGTTGACGTCTTTAGTTCTCCACCCCCTTCCTATATGCACTGTTACACCCCTCTCCAAAATGTCTGTCCTAATTTATGGGGCACATATTGAATTTGGAGAGTTAAACTAAATTTTTAAATGCTTTTTTAAGTATTTAAGGTAAGTATTGGATTTATAATGCTTTTTATGTAATTTTCAAATAATATATTTTACTCTCTCTGTCCCAATATATGTGACACTGATAGAATTTCGAAAGTCGATCAAATTTTTATATGTTTCTTTTTACCTCTTTTAAGTTGTTAATTGTTGTAATTTATAGTACTTTTTATTTAATTTTCAAATATATAACAAACTAAAAGAAAAGCAAGACAAATGAATTGAATTAGAGAAAGTACATAATTTCCAAAAATACCGCCGGCTAGAAGCATGCATGTCGAAGAATAGTTGTCTGCTTCTAGACACTTTTATATAGTAGTAAATCTATTAGAATAGCGATAGCGACTTTTATATAGTAGTAAATCTAGTAGAATAGCGAAGAAAGAAGATATTCTAGTAACCACCTTGGTCTCTCCACAAACTTCTCCAACTTCGTATCTTATTTGCCCGATTGTTCTCTGTTCGAACAAACCATATTTCAGTTGATCAATTCAATTTTTTTTTTAATCTATTTCTTACAAATAGGCACAGGCTCTGAGCATGTCATAGCTGCTTGTGTACATTTACTGGCTAGTGTTGCTTTTCATGATTCGATATAATTGTTGCAGTTATTGTTCCTCTGATATTTTCCTACCGCCTTTATTTTTATGGTTTTAGGAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAA-AACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAGGTGCGTCATTATCACATTGATGGAAGAAAGTTACTATCGCTTTTCGCATGCAAAAATATTACTTCATCCATCCCAATTTATGTGATATCCTTCCTTTTTAGTCAGTTAAAAAAATGACACCTTTCTGTATTTAAAACATATCTGGTGGTTTTTGTTTGGGCCAGTGTTTTAGTTCTGCATCTTTGCATTGCCTGTTGGGCCTTCTTTGTTTATTTATTTTAAAGAAAGACATTGTTTGGTTGCTTATTGATATATAAAATCAGCCTCCTGGTCTTCTTTTTTTTTTTTTTTTTGAAAAAGTAACAGTTTAACTTTAAACTTTTCATTTTACCCTCAAGAGATGTTCTATAGTCACATAAATATCTATGAATTATTTTAGACCACAAGTATTATCGTTCTTTCTTTCTTGAACTCTGTTGCCTGTCAAAAACCATGGGATGAAGGAGTATTTGTTATGTCTATTTTTTTGAAAATTCTAACACCAATGAGATGAATCTTTCTAATTGTGAGTATCTCTAATTAAGATGAAGTTTTTGTGATGTATCAGGGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGC-CAAA-AATCTATTGCAATCAACCCCAATTATAGCAAGGCTTAT-AGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCA-CAAAAGGTTGGATTAAGAATCTTTTCGCTTTATTAGTTGTTTAGTTGGTTTGGTTTTAGAATTTTTGAAATCTTGGTAGTTTGGAGTACATTATATTTTTGAATTTATTGAGAATGGTCATCTTTATGCTCCAACATCTTTGGCATGCGGCTACTGGTGTGGTTTCTAGTTCTGTATTTTAACTGATGAATGAAATTAACTGCTTTCTCATTTTCTATATTTTGTTTCAGTTAGTTTCATCAGTTCACCATGTCATTTTATTTGAAGTTCTTCCCATGATATGCTGACATAATATATAAGATGAAGCGTAGATTTGAAGGATGATTTCACAAACCTCAGCTAACGCTTAACATTACTGCAAATGTCTTAAATCGTGCTTCTTAGGTATTTGAACTGTCTGCCAGATTCACTTTGTATTAGGTTATATATAAGTCCTGTACTAGAAAAGGCAAAGGGAACGTTGGCTAGAAAAGACAGTTGGATCCTCCTACTTCATTAGTGAAAAGTTTACGATCATTTTACAGTCATGATTATGTTTGTGGGTACCCACTAAACCATAACGACAAAATTAAATAGAAGCAATTTTAAGAATTGGAAGGAAAAGATGAGTGGGAGAAACCACTATCTACATTTAATGCTTTTCAACCTCCCTTCATTCTTCGTCCTTGCCTTTTCCCTCATCAAGAGATGGTGAGTGAAGTCTTCCATCCCCAACCAATAAATGGATTAAAGTAGAATTTCAGTCAGAATCTGCGCTGGAAGTGATGGAACCCGCCTTGCACATGTTAACTGTGGGCATCGGCTGATATCTATGTCTACGAGGGATTAGGACAGCCGGGTACACTAAGCTCCTGCTATGTGCAGGTCTGGGGAATGGCCGGACCCCAAGGGTCTTTTGTAAGCAACCTTACCCTGCATTTCTACAAGAGGTTGTTTCCACAGCTTGAACCTGTGACCTCTTGGTCGCATGACAATAACTTTACCAGTAACGCCAAGGCTCCCTTCAACTTTCAACACCAACTGTGAATTATTATATGTTATATTATGGTGCTTAGTAATGCATCTGTCTATACATCGGTCTTGGTGAATTTTAAAAAGGTGTGCACTTTATCTCTGTAGAGTAAACTATGTTAGGAATTTAGATAATCTGTGCCAGTATACAAATATTTGGATTTTCTTCTCTAGTTAATCCGCAAAAAGAAATCTATATCTGACATAAAGCTTTGTTTATGAAGCATTGCAGTTGGATCCTAATA-ATGATTCCATCAAGGAAAATATACGGGTTAGTTCCTATTATTAATTGGGGTTTTTAAGGTTATTAGCTGGAAAATGGTGTTTGCGGTATTATCTGAAGTATGACTCTCATATTTCAAATTTGTAGGTAGCAGAACAAAAGTT-GAAA-GAAGAGCAACAGAGGAGATGGAATGATCAG</genome_strand>
        <mrna_strand>CCATACTGCTTTGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCAAAAATCTGGATGTGCATTGTTCAACCGAAACAACCTTGCTGAGATCTTAAAATCGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAACAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGCTTTAACCCAGATTCACCAATATGAAGCAGCAGTTCAAGACTGCGCAAACAATCTATTGCAATCAAGCCCAATTATAGCAAGGCTTATAAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACCAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGTTGGATCCTAATACATGATT-CGTC-AGGAAAATATACGG...................................................................................................GTAGCAGAACAAAAGTTGGAAACGAAGAGCAACAGACGAGGGGGAATGACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573554" ref_strand="+" ref_description="SGN-E573554 [32882]">
      <seq>aaatctggatgtgcaatgttcaaccgaaacaaccttgctgagatcttaaaatcgcaaggtaataaagcgatgcagtcaaaactttaccctgatgctattgagctgtattcttttgcaattgcactttgtgaagataatgcagtttactattgcaacagggcagctgctttaacccagattcaccaatatgaagcagcagttcaagactgccaaaaatctattgcaatcaaccccaattatagcaaggcttatagtagattgggttttgtctattatgctcaagggaagtaccgtgatgccatagataagggattcacaaaagcattgcagttggatcctaataatgattccgtcaaggaaaatatacgggtagcagaacaaaagttgaaagaagagcaacagaggagggggaatgaccagagctcaacctcttcaagccatggacaagactcaaatcaccagcctgctgaggcacctagaagtcatgccatgccttcaccatttggatcaatgtcatttgatggaaatggcattcctgatttgacgaacatgtttatgaacatgccaagagatgcattccaagggcagcatggtccaaacgggccagaaagaagcaacaacgctgattcaaccaatgagcccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="14280" stop="19452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14580" g_stop="14637" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16299" g_stop="16398" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="158" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16946" g_stop="17109" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="322" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17110" i_stop="18338" i_length="1229">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18339" g_stop="18385" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="369" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18485" g_stop="18535" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="420" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18536" i_stop="18926" i_length="391">
            <donor d_prob="0.898" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18927" g_stop="19152" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="646" r_length="226" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E573554" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14580" e_stop="14637"/>
          <exon e_start="16299" e_stop="16398"/>
          <exon e_start="16946" e_stop="17109"/>
          <exon e_start="18339" e_stop="18385"/>
          <exon e_start="18485" e_stop="18535"/>
          <exon e_start="18927" e_stop="19152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAGGTATATTGTAACTACAACTTTTTTCCCTCCAAAGTAAAGTTGTTTTATTGATGAAACAGCAAAGTGGTGAGATTACCAGTATTATAAACTGTATCTCGATTAGCTATGTAATGAGTTAAGAAATGTAAGAGAGTATCAAATATTTTTTGCATTTTCCGCAAAATAGGTAAATATTATAAAGATGTATGACTTCTAGAATTGTAACCCATAGAAACATAGAATTACAGCCCCAATTCATTCTTCCCATCAGAACTTCGTCTGTTTCCTTCTCTTTGTACATGCAAGAAGGCACTGTATTCCAGATTGTTTGCATTGTCTTATTTTCTGCCCTTTGTAACATTCTATTGCTTTTTCACAATGTTTGGCATCATCCACGGTACACCAAATGGATTTAGAAATAAACTCTAGCTTTGCCAGCAAACAGGAATCCAACAGTAGTTTTTTACCGTTTCGGCTATTTCTTCACACTAGTAATAACTGCTGAGTTCTCATTGTTAAGCAGGTTTCTTTTGCTGCAATGTAGTAAGTGTTCAACAGGGTTTAAGATTGCATTCCAGGGCAATATTCTTCTTTCATTAGCAGAGCCATCAGTACCTCGTAGCAAGATTTCACCTAAAATGTACCGTCCTTCCTTGCTCGCCAAGTGGAAGAATCAGTTTCATTTGATAACTTGTTAGCTTCTGATAGCTAAAAAAGGAACTAGGATATGATTTCCATTTTCCAGTCTTGGAATGGCACCTGAACCTGATGTTCTTTTCATTTCCAATTATACAATCTTCAATTTAGGCCTCCTTGTCTAGTGCTTAACTGATACCTGGTTAAAGGTTTGTCTCAGTATATTCTGCTGCAGTGGGCAATCTTCCTAAATTTGATTTTCCCTCCATATTCAACTTTCAGCTTGACTAAATTGTTGAAATGTCCAGTTCCCTTGTGTTCAAACTTCAAAATGGAATTTGACTATATGAATCGTCGATATTTCACCCAAGATGATGTTCTTAGCAGTCTATGAAGTTGGAATTAAGACCCACAAGTGAGAGAAAAAGTAAGAGAAATTAGTTGATTTCTTCTTATCTGCTTAAGCTAGGGTGGATGGTGGCATGGTGCTACCCCGTATCTATACTGGCCGTGCAGGTAAAGAGTGGAATAGTTGATGTGCGTGCAAGTTGGTCAGAGTACCACTGTTATCAAAAGATGAATCTTCAATATTCATTTTGCCTATTTGGACCCATCTCATTCCAAGACGTGCCTAGTTTCCAGTATATTTAGGAGAAACAAACTAGTTAAATCACGAGTAGCACGTGGAACTATCAGTAGTTCATATTACTACAGGATGAAAAGCTCAAATCATGTTGAGTTGAATTCAGGGTAAGCTAATTTTGGTTCACACTTCACAGTAACTTGAACTTCCCTCGGGCCTCAGTTCAGCCATGCTCCATACACTCAGCTGAATCCTAATTTTATGGGACAGAGGATTGGGCTTTGAGTTACCTCAGTCATTGTGAAGATGTTTTCAACAGGGGCCTTACTTGAATATTCTCAAAAATGTGTGCTTGAGGTTGACACCTTCTCGCGGAGAGGTTTAGTTTCCTTTCAACGGTGTAGTTCATTTTCTTTCAAAAAATACTCAAAAGTTCTCTTTTCTTTTGGTGATTTTATAATAGGTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAGGTGCGTCATTATCACATTGATGGAAGAAAGTTACTATCGCTTTTCGCATGCAAAAATATTACTTCATCCATCCCAATTTATGTGATATCCTTCCTTTTTAGTCAGTTAAAAAAATGACACCTTTCTGTATTTAAAACATATCTGGTGGTTTTTGTTTGGGCCAGTGTTTTAGTTCTGCATCTTTGCATTGCCTGTTGGGCCTTCTTTGTTTATTTATTTTAAAGAAAGACATTGTTTGGTTGCTTATTGATATATAAAATCAGCCTCCTGGTCTTCTTTTTTTTTTTTTTTTTGAAAAAGTAACAGTTTAACTTTAAACTTTTCATTTTACCCTCAAGAGATGTTCTATAGTCACATAAATATCTATGAATTATTTTAGACCACAAGTATTATCGTTCTTTCTTTCTTGAACTCTGTTGCCTGTCAAAAACCATGGGATGAAGGAGTATTTGTTATGTCTATTTTTTTGAAAATTCTAACACCAATGAGATGAATCTTTCTAATTGTGAGTATCTCTAATTAAGATGAAGTTTTTGTGATGTATCAGGGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAGGTTGGATTAAGAATCTTTTCGCTTTATTAGTTGTTTAGTTGGTTTGGTTTTAGAATTTTTGAAATCTTGGTAGTTTGGAGTACATTATATTTTTGAATTTATTGAGAATGGTCATCTTTATGCTCCAACATCTTTGGCATGCGGCTACTGGTGTGGTTTCTAGTTCTGTATTTTAACTGATGAATGAAATTAACTGCTTTCTCATTTTCTATATTTTGTTTCAGTTAGTTTCATCAGTTCACCATGTCATTTTATTTGAAGTTCTTCCCATGATATGCTGACATAATATATAAGATGAAGCGTAGATTTGAAGGATGATTTCACAAACCTCAGCTAACGCTTAACATTACTGCAAATGTCTTAAATCGTGCTTCTTAGGTATTTGAACTGTCTGCCAGATTCACTTTGTATTAGGTTATATATAAGTCCTGTACTAGAAAAGGCAAAGGGAACGTTGGCTAGAAAAGACAGTTGGATCCTCCTACTTCATTAGTGAAAAGTTTACGATCATTTTACAGTCATGATTATGTTTGTGGGTACCCACTAAACCATAACGACAAAATTAAATAGAAGCAATTTTAAGAATTGGAAGGAAAAGATGAGTGGGAGAAACCACTATCTACATTTAATGCTTTTCAACCTCCCTTCATTCTTCGTCCTTGCCTTTTCCCTCATCAAGAGATGGTGAGTGAAGTCTTCCATCCCCAACCAATAAATGGATTAAAGTAGAATTTCAGTCAGAATCTGCGCTGGAAGTGATGGAACCCGCCTTGCACATGTTAACTGTGGGCATCGGCTGATATCTATGTCTACGAGGGATTAGGACAGCCGGGTACACTAAGCTCCTGCTATGTGCAGGTCTGGGGAATGGCCGGACCCCAAGGGTCTTTTGTAAGCAACCTTACCCTGCATTTCTACAAGAGGTTGTTTCCACAGCTTGAACCTGTGACCTCTTGGTCGCATGACAATAACTTTACCAGTAACGCCAAGGCTCCCTTCAACTTTCAACACCAACTGTGAATTATTATATGTTATATTATGGTGCTTAGTAATGCATCTGTCTATACATCGGTCTTGGTGAATTTTAAAAAGGTGTGCACTTTATCTCTGTAGAGTAAACTATGTTAGGAATTTAGATAATCTGTGCCAGTATACAAATATTTGGATTTTCTTCTCTAGTTAATCCGCAAAAAGAAATCTATATCTGACATAAAGCTTTGTTTATGAAGCATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGGGTTAGTTCCTATTATTAATTGGGGTTTTTAAGGTTATTAGCTGGAAAATGGTGTTTGCGGTATTATCTGAAGTATGACTCTCATATTTCAAATTTGTAGGTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAGGTAACTGACAATTGTGGCATTACAGAAGAGCTTTACTTGATTTATTAAGTTGATAATTACAAGGTATGTAATTAACAACCAAATCATGTGCTGAGCTCAATACTCTGTAATAATCTGTCTGTCTGTGGTAGCACCATCTAATGCTGCATTTTCGTGTGAGGAACGACAACAAACATGTATATTCTCACTTGTAATCTTTCTGTTTAAAAGAAAGAATAGATTTCAATATTTTTTTCTTTTTGATAAGTAAAAAAATGGGAACATGTATCTGCAGTTCAGTGAGCTGACAAAGTGGTAATAAATTCAGCTCCACATATCTGAAAATTCAATCCTCAATTGTAGCAAGCATTAACCAAAAAACCCTATATTTCTTTCCTTGTCTATTTTGCAGAGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTA</genome_strand>
        <mrna_strand>AAATCTGGATGTGCAATGTTCAACCGAAACAACCTTGCTGAGATCTTAAAATCGCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCTGCTTTAACCCAGATTCACCAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGTTGGATCCTAATAATGATTCCGTCAAGGAAAATATACGG...................................................................................................GTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGGGGGAATGACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGAGGCACCTAGAAGTCATGCCATGCCTTCACCATTTGGATCAATGTCATTTGATGGAAATGGCATTCCTGATTTGACGAACATGTTTATGAACATGCCAAGAGATGCATTCCAAGGGCAGCATGGTCCAAACGGGCCAGAAAGAAGCAACAACGCTGATTCAACCAATGAGCCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583287" ref_strand="+" ref_description="SGN-E583287 [9108]">
      <seq>attgcaacagggcagctgctttaacccagattcaccaatatgaagcagcagttcaagactgccaaaaatctattgcaatcaaccccaattatcagcaaggcttatagtagattgggtttcgtctattatgctcaagggaagtaccgtgatgccatagataagggattcacaaaagcattgcagttggatcctaataatgattccgtcaaggaaaatatacgggtagcagaacaaaagttgaaagaagagcaacagaggagggggaatgaccagagctcaagctcttcaagccatggacaagactcaaatcaccagcctgctggggcacctagaagtcatgccatgccttcaccatttggatcagtgtcatatgatggaaatggcattcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="16636" stop="19344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16946" g_stop="17109" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="175" r_length="165" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17110" i_stop="18338" i_length="1229">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18339" g_stop="18385" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="222" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18485" g_stop="18535" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="273" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18536" i_stop="18926" i_length="391">
            <donor d_prob="0.898" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18927" g_stop="19044" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="391" r_length="118" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E583287" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16946" e_stop="17109"/>
          <exon e_start="18339" e_stop="18385"/>
          <exon e_start="18485" e_stop="18535"/>
          <exon e_start="18927" e_stop="19044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTAT-AGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAGGTTGGATTAAGAATCTTTTCGCTTTATTAGTTGTTTAGTTGGTTTGGTTTTAGAATTTTTGAAATCTTGGTAGTTTGGAGTACATTATATTTTTGAATTTATTGAGAATGGTCATCTTTATGCTCCAACATCTTTGGCATGCGGCTACTGGTGTGGTTTCTAGTTCTGTATTTTAACTGATGAATGAAATTAACTGCTTTCTCATTTTCTATATTTTGTTTCAGTTAGTTTCATCAGTTCACCATGTCATTTTATTTGAAGTTCTTCCCATGATATGCTGACATAATATATAAGATGAAGCGTAGATTTGAAGGATGATTTCACAAACCTCAGCTAACGCTTAACATTACTGCAAATGTCTTAAATCGTGCTTCTTAGGTATTTGAACTGTCTGCCAGATTCACTTTGTATTAGGTTATATATAAGTCCTGTACTAGAAAAGGCAAAGGGAACGTTGGCTAGAAAAGACAGTTGGATCCTCCTACTTCATTAGTGAAAAGTTTACGATCATTTTACAGTCATGATTATGTTTGTGGGTACCCACTAAACCATAACGACAAAATTAAATAGAAGCAATTTTAAGAATTGGAAGGAAAAGATGAGTGGGAGAAACCACTATCTACATTTAATGCTTTTCAACCTCCCTTCATTCTTCGTCCTTGCCTTTTCCCTCATCAAGAGATGGTGAGTGAAGTCTTCCATCCCCAACCAATAAATGGATTAAAGTAGAATTTCAGTCAGAATCTGCGCTGGAAGTGATGGAACCCGCCTTGCACATGTTAACTGTGGGCATCGGCTGATATCTATGTCTACGAGGGATTAGGACAGCCGGGTACACTAAGCTCCTGCTATGTGCAGGTCTGGGGAATGGCCGGACCCCAAGGGTCTTTTGTAAGCAACCTTACCCTGCATTTCTACAAGAGGTTGTTTCCACAGCTTGAACCTGTGACCTCTTGGTCGCATGACAATAACTTTACCAGTAACGCCAAGGCTCCCTTCAACTTTCAACACCAACTGTGAATTATTATATGTTATATTATGGTGCTTAGTAATGCATCTGTCTATACATCGGTCTTGGTGAATTTTAAAAAGGTGTGCACTTTATCTCTGTAGAGTAAACTATGTTAGGAATTTAGATAATCTGTGCCAGTATACAAATATTTGGATTTTCTTCTCTAGTTAATCCGCAAAAAGAAATCTATATCTGACATAAAGCTTTGTTTATGAAGCATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGGGTTAGTTCCTATTATTAATTGGGGTTTTTAAGGTTATTAGCTGGAAAATGGTGTTTGCGGTATTATCTGAAGTATGACTCTCATATTTCAAATTTGTAGGTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAGGTAACTGACAATTGTGGCATTACAGAAGAGCTTTACTTGATTTATTAAGTTGATAATTACAAGGTATGTAATTAACAACCAAATCATGTGCTGAGCTCAATACTCTGTAATAATCTGTCTGTCTGTGGTAGCACCATCTAATGCTGCATTTTCGTGTGAGGAACGACAACAAACATGTATATTCTCACTTGTAATCTTTCTGTTTAAAAGAAAGAATAGATTTCAATATTTTTTTCTTTTTGATAAGTAAAAAAATGGGAACATGTATCTGCAGTTCAGTGAGCTGACAAAGTGGTAATAAATTCAGCTCCACATATCTGAAAATTCAATCCTCAATTGTAGCAAGCATTAACCAAAAAACCCTATATTTCTTTCCTTGTCTATTTTGCAGAGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTG</genome_strand>
        <mrna_strand>GGCAGCTGCTTTAACCCAGATTCACCAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATCAGCAAGGCTTATAGTAGATTGGGTTTCGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGTTGGATCCTAATAATGATTCCGTCAAGGAAAATATACGG...................................................................................................GTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGGGGGAATGACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAAGCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGGGCACCTAGAAGTCATGCCATGCCTTCACCATTTGGATCAGTGTCATATGATGGAAATGGCATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463559" ref_strand="+" ref_description="SGN-E463559 [cPRO-15-E15]">
      <seq>atgaagcagcagttcaagactgccaaaaatctattgcaatcaaccccaattatagcaaggcttatagtagattgggttttgtctattatgctcaagggaagtaccgtgatgccatagataagggattcacaaaagcattgcagttggatcctaataatgattccgtcaaggaaaatatacgggtagcagaacaaaagttgaaagaagagcaacagaggagggggaatgaccagagctcaacctcttcaagccatggacaagactcaaatcaccagcctgctgaggcacctagaagtcatgccatgccttcaccatttggatcaatgtcatttgatggaaatggcattcctgatttgacgaacatgtttatgaacatgccaagagatgcattccaagggcagcatggtccaaacgggccagaaagaagcaacaacgctgattcaaccaatgagcccattataagaataaccaggagtgtcaatctcggttttggtgaacagatgcctgaggaattgacaggaaccttaaggtctgttatggagatgttttcaggagctcaacctcctgagaatcctcgggataacatgaatggaanggtcacaccaaattgaggcatttatgttagtgagcctcattctcgangtgattaacatctccgtcctttttacttgttgctttttttggtaactgcactcttgcatttgaattgatcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="16675" stop="19632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16975" g_stop="17109" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17110" i_stop="18338" i_length="1229">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18339" g_stop="18385" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="182" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18485" g_stop="18535" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="233" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18536" i_stop="18926" i_length="391">
            <donor d_prob="0.898" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18927" g_stop="19417" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="718" r_length="485" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E463559" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16975" e_stop="17109"/>
          <exon e_start="18339" e_stop="18385"/>
          <exon e_start="18485" e_stop="18535"/>
          <exon e_start="18927" e_stop="19417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAGGTTGGATTAAGAATCTTTTCGCTTTATTAGTTGTTTAGTTGGTTTGGTTTTAGAATTTTTGAAATCTTGGTAGTTTGGAGTACATTATATTTTTGAATTTATTGAGAATGGTCATCTTTATGCTCCAACATCTTTGGCATGCGGCTACTGGTGTGGTTTCTAGTTCTGTATTTTAACTGATGAATGAAATTAACTGCTTTCTCATTTTCTATATTTTGTTTCAGTTAGTTTCATCAGTTCACCATGTCATTTTATTTGAAGTTCTTCCCATGATATGCTGACATAATATATAAGATGAAGCGTAGATTTGAAGGATGATTTCACAAACCTCAGCTAACGCTTAACATTACTGCAAATGTCTTAAATCGTGCTTCTTAGGTATTTGAACTGTCTGCCAGATTCACTTTGTATTAGGTTATATATAAGTCCTGTACTAGAAAAGGCAAAGGGAACGTTGGCTAGAAAAGACAGTTGGATCCTCCTACTTCATTAGTGAAAAGTTTACGATCATTTTACAGTCATGATTATGTTTGTGGGTACCCACTAAACCATAACGACAAAATTAAATAGAAGCAATTTTAAGAATTGGAAGGAAAAGATGAGTGGGAGAAACCACTATCTACATTTAATGCTTTTCAACCTCCCTTCATTCTTCGTCCTTGCCTTTTCCCTCATCAAGAGATGGTGAGTGAAGTCTTCCATCCCCAACCAATAAATGGATTAAAGTAGAATTTCAGTCAGAATCTGCGCTGGAAGTGATGGAACCCGCCTTGCACATGTTAACTGTGGGCATCGGCTGATATCTATGTCTACGAGGGATTAGGACAGCCGGGTACACTAAGCTCCTGCTATGTGCAGGTCTGGGGAATGGCCGGACCCCAAGGGTCTTTTGTAAGCAACCTTACCCTGCATTTCTACAAGAGGTTGTTTCCACAGCTTGAACCTGTGACCTCTTGGTCGCATGACAATAACTTTACCAGTAACGCCAAGGCTCCCTTCAACTTTCAACACCAACTGTGAATTATTATATGTTATATTATGGTGCTTAGTAATGCATCTGTCTATACATCGGTCTTGGTGAATTTTAAAAAGGTGTGCACTTTATCTCTGTAGAGTAAACTATGTTAGGAATTTAGATAATCTGTGCCAGTATACAAATATTTGGATTTTCTTCTCTAGTTAATCCGCAAAAAGAAATCTATATCTGACATAAAGCTTTGTTTATGAAGCATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGGGTTAGTTCCTATTATTAATTGGGGTTTTTAAGGTTATTAGCTGGAAAATGGTGTTTGCGGTATTATCTGAAGTATGACTCTCATATTTCAAATTTGTAGGTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAGGTAACTGACAATTGTGGCATTACAGAAGAGCTTTACTTGATTTATTAAGTTGATAATTACAAGGTATGTAATTAACAACCAAATCATGTGCTGAGCTCAATACTCTGTAATAATCTGTCTGTCTGTGGTAGCACCATCTAATGCTGCATTTTCGTGTGAGGAACGACAACAAACATGTATATTCTCACTTGTAATCTTTCTGTTTAAAAGAAAGAATAGATTTCAATATTTTTTTCTTTTTGATAAGTAAAAAAATGGGAACATGTATCTGCAGTTCAGTGAGCTGACAAAGTGGTAATAAATTCAGCTCCACATATCTGAAAATTCAATCCTCAATTGTAGCAAGCATTAACCAAAAAACCCTATATTTCTTTCCTTGTCTATTTTGCAGAGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTATAAGAATAAGCAGGAGCGTCAATCTTGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCGGGATAACATGAATGGAA-GATCAACACCAAATTGAGGCCATTTATGTTAGTGAACTCAACCTCATTCTCGAGTTGATTAACATCTCCATCCTTTTTACCTGTTGCTTTTTTGGTGAAGTGCACTCTTGCATCTGAATTGATCATCTTC</genome_strand>
        <mrna_strand>ATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGTTGGATCCTAATAATGATTCCGTCAAGGAAAATATACGG...................................................................................................GTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGGGGGAATGACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGAGGCACCTAGAAGTCATGCCATGCCTTCACCATTTGGATCAATGTCATTTGATGGAAATGGCATTCCTGATTTGACGAACATGTTTATGAACATGCCAAGAGATGCATTCCAAGGGCAGCATGGTCCAAACGGGCCAGAAAGAAGCAACAACGCTGATTCAACCAATGAGCCCATTATAAGAATAACCAGGAGTGTCAATCTCGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCGGGATAACATGAATGGAANGGTC-ACACCAAATTGAGG-CATTTATGTTAGTG-----AGCCTCATTCTCGANGTGATTAACATCTCCGTCCTTTTTACTTGTTGCTTTTTTTGGTAACTGCACTCTTGCATTTGAATTGATCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613699" ref_strand="+" ref_description="SGN-E613699 [63477]">
      <seq>tcaaaaatctattgcaatcaaccccaattatagcaaggcttatagtagattgggttttgtctattatgctcaagggaagtaccgtgatgccatagataagggattcacaaaagcattgcagttggatcctaataatgattccgtcaaggaaaatatacgggtagcagaacaaaagttgaaagaagagcaacagaggagggggaatgaccagagctcaacctcttcaagccatggacaagactcaaatcaccagcctgctgaggcacctagaagtcatgccatgccttcaccatttggatcaatgtcatttgatggaaatggcattcctgatttgacgaacatgtttatgaacatgccaagagatgcattccaagggcagcatggtccaaacgggccagaaagaagcaacaacgctgattcaaccaatgagcccattataagaataaccaggagtgtcaatctcggttttggtgaacagatgcctgaggaattgacaggaaccttaaggtctgttatggagatgttttcaggagctcaactcctgagaatcctcgggataacatgaatggaaggtcaacaccaaattgaggcatttatgttagtgagcctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="16698" stop="19627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16997" g_stop="17109" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17110" i_stop="18338" i_length="1229">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18339" g_stop="18385" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="160" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18485" g_stop="18535" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="211" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18536" i_stop="18926" i_length="391">
            <donor d_prob="0.898" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18927" g_stop="19329" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="613" r_length="402" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E613699" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16997" e_stop="17109"/>
          <exon e_start="18339" e_stop="18385"/>
          <exon e_start="18485" e_stop="18535"/>
          <exon e_start="18927" e_stop="19329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAGGTTGGATTAAGAATCTTTTCGCTTTATTAGTTGTTTAGTTGGTTTGGTTTTAGAATTTTTGAAATCTTGGTAGTTTGGAGTACATTATATTTTTGAATTTATTGAGAATGGTCATCTTTATGCTCCAACATCTTTGGCATGCGGCTACTGGTGTGGTTTCTAGTTCTGTATTTTAACTGATGAATGAAATTAACTGCTTTCTCATTTTCTATATTTTGTTTCAGTTAGTTTCATCAGTTCACCATGTCATTTTATTTGAAGTTCTTCCCATGATATGCTGACATAATATATAAGATGAAGCGTAGATTTGAAGGATGATTTCACAAACCTCAGCTAACGCTTAACATTACTGCAAATGTCTTAAATCGTGCTTCTTAGGTATTTGAACTGTCTGCCAGATTCACTTTGTATTAGGTTATATATAAGTCCTGTACTAGAAAAGGCAAAGGGAACGTTGGCTAGAAAAGACAGTTGGATCCTCCTACTTCATTAGTGAAAAGTTTACGATCATTTTACAGTCATGATTATGTTTGTGGGTACCCACTAAACCATAACGACAAAATTAAATAGAAGCAATTTTAAGAATTGGAAGGAAAAGATGAGTGGGAGAAACCACTATCTACATTTAATGCTTTTCAACCTCCCTTCATTCTTCGTCCTTGCCTTTTCCCTCATCAAGAGATGGTGAGTGAAGTCTTCCATCCCCAACCAATAAATGGATTAAAGTAGAATTTCAGTCAGAATCTGCGCTGGAAGTGATGGAACCCGCCTTGCACATGTTAACTGTGGGCATCGGCTGATATCTATGTCTACGAGGGATTAGGACAGCCGGGTACACTAAGCTCCTGCTATGTGCAGGTCTGGGGAATGGCCGGACCCCAAGGGTCTTTTGTAAGCAACCTTACCCTGCATTTCTACAAGAGGTTGTTTCCACAGCTTGAACCTGTGACCTCTTGGTCGCATGACAATAACTTTACCAGTAACGCCAAGGCTCCCTTCAACTTTCAACACCAACTGTGAATTATTATATGTTATATTATGGTGCTTAGTAATGCATCTGTCTATACATCGGTCTTGGTGAATTTTAAAAAGGTGTGCACTTTATCTCTGTAGAGTAAACTATGTTAGGAATTTAGATAATCTGTGCCAGTATACAAATATTTGGATTTTCTTCTCTAGTTAATCCGCAAAAAGAAATCTATATCTGACATAAAGCTTTGTTTATGAAGCATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGGGTTAGTTCCTATTATTAATTGGGGTTTTTAAGGTTATTAGCTGGAAAATGGTGTTTGCGGTATTATCTGAAGTATGACTCTCATATTTCAAATTTGTAGGTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAGGTAACTGACAATTGTGGCATTACAGAAGAGCTTTACTTGATTTATTAAGTTGATAATTACAAGGTATGTAATTAACAACCAAATCATGTGCTGAGCTCAATACTCTGTAATAATCTGTCTGTCTGTGGTAGCACCATCTAATGCTGCATTTTCGTGTGAGGAACGACAACAAACATGTATATTCTCACTTGTAATCTTTCTGTTTAAAAGAAAGAATAGATTTCAATATTTTTTTCTTTTTGATAAGTAAAAAAATGGGAACATGTATCTGCAGTTCAGTGAGCTGACAAAGTGGTAATAAATTCAGCTCCACATATCTGAAAATTCAATCCTCAATTGTAGCAAGCATTAACCAAAAAACCCTATATTTCTTTCCTTGTCTATTTTGCAGAGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTATAAGAATAAGCAGGAGCGTCAATCTTGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCGGGATAACATGAATGGAAGATCAACACCAAATTGAGGCCATTTATGTTAGTGA-ACTCAAC</genome_strand>
        <mrna_strand>TCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCAGTTGGATCCTAATAATGATTCCGTCAAGGAAAATATACGG...................................................................................................GTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGGGGGAATGACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGAGGCACCTAGAAGTCATGCCATGCCTTCACCATTTGGATCAATGTCATTTGATGGAAATGGCATTCCTGATTTGACGAACATGTTTATGAACATGCCAAGAGATGCATTCCAAGGGCAGCATGGTCCAAACGGGCCAGAAAGAAGCAACAACGCTGATTCAACCAATGAGCCCATTATAAGAATAACCAGGAGTGTCAATCTCGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAA-CTCCTGAGAATCCTCGGGATAACATGAATGGAAGGTCAACACCAAATTGAGG-CATTTATGTTAGTGAGCCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466863" ref_strand="+" ref_description="SGN-E466863 [cPRO-26-G10]">
      <seq>gcagaacaaaagttgaaagaagagcaacagaggagggggaatgaccagagctcaacctcttcaagccatggacaagactcaaatcaccagcctgctgaggcacctagaagtcatgccatgccttcaccatttggatcaatgtcatttgatggaaatggcattcctgatttgacgaacatgtttatgaacatgccaagagatgcattccaagggcagcatggtccaaacgggccagaaagaagcaacaacgctgattcaaccaatgagcccattataagaataaccaggagtgtcaatctcggttttggtgaacagatgcctgaggaattgacaggaaccttaaggtctgttatggagatgttttcaggagctcaacctcctgagaatcctcgggataacatgaatggaaggtcaacaccaaattgaggcatttatgttagtgagcctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="18188" stop="19627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18488" g_stop="18535" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18536" i_stop="18926" i_length="391">
            <donor d_prob="0.898" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18927" g_stop="19329" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="451" r_length="403" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E466863" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18488" e_stop="18535"/>
          <exon e_start="18927" e_stop="19329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAGGTAACTGACAATTGTGGCATTACAGAAGAGCTTTACTTGATTTATTAAGTTGATAATTACAAGGTATGTAATTAACAACCAAATCATGTGCTGAGCTCAATACTCTGTAATAATCTGTCTGTCTGTGGTAGCACCATCTAATGCTGCATTTTCGTGTGAGGAACGACAACAAACATGTATATTCTCACTTGTAATCTTTCTGTTTAAAAGAAAGAATAGATTTCAATATTTTTTTCTTTTTGATAAGTAAAAAAATGGGAACATGTATCTGCAGTTCAGTGAGCTGACAAAGTGGTAATAAATTCAGCTCCACATATCTGAAAATTCAATCCTCAATTGTAGCAAGCATTAACCAAAAAACCCTATATTTCTTTCCTTGTCTATTTTGCAGAGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTATAAGAATAAGCAGGAGCGTCAATCTTGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCGGGATAACATGAATGGAAGATCAACACCAAATTGAGGCCATTTATGTTAGTGA-ACTCAAC</genome_strand>
        <mrna_strand>GCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGGGGGAATGACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................AGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGAGGCACCTAGAAGTCATGCCATGCCTTCACCATTTGGATCAATGTCATTTGATGGAAATGGCATTCCTGATTTGACGAACATGTTTATGAACATGCCAAGAGATGCATTCCAAGGGCAGCATGGTCCAAACGGGCCAGAAAGAAGCAACAACGCTGATTCAACCAATGAGCCCATTATAAGAATAACCAGGAGTGTCAATCTCGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCGGGATAACATGAATGGAAGGTCAACACCAAATTGAGG-CATTTATGTTAGTGAGCCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411097" ref_strand="-" ref_description="SGN-E411097 [STM-14-I13]">
      <seq>tagaagtcatgccatgcctccaccatttggatcaatgtcatttgatggaaatggctttcctgatttgacgaacatgtttatgaacatgccaagagatgcattccaagggcagcatggtccaaacgggccagaaagaagcaacaacgctgattcaaccaatgagcccattataagaataaccaggagtgtcaatctcggttttggtgaacagatgcctgaggaattgacaggaaccttaaggtctgttatggagatgttttcaggagctcaacctcctgagaatcctcaggataacatgaatggaaggtcaacaccaaattgaggcatttatgttagtgagcctcattctcgagttgattaacatctcagtcctttttacttgttgcttttttggttaactgcactcttgcatttgaattgatcatctttccctcaacttgatttgtacattaaagatttaaaactcaggtttgcagtgtaatcttaggtgctttgctgatgctaaaaaaaaaaaaaaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="18683" stop="19794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18983" g_stop="19476" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="527"/>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E411097" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411097" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18983" e_stop="19476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTATAAGAATAAGCAGGAGCGTCAATCTTGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCGGGATAACATGAATGGAAGATCAACACCAAATTGAGGCCATTTATGTTAGTGAACTCAACCTCATTCTCGAGTTGATTAACATCTCCATCCTTTTTACCTGTTGCTTTTTTGGTGAAGTGCACTCTTGCATCTGAATTGATCATCTTCCCCTCGACATGATTTGTACATTAAAGATCTAAAACTCAGGTTTGCAGTGTAATCTTAGG</genome_strand>
        <mrna_strand>TAGAAGTCATGCCATGCCTCCACCATTTGGATCAATGTCATTTGATGGAAATGGCTTTCCTGATTTGACGAACATGTTTATGAACATGCCAAGAGATGCATTCCAAGGGCAGCATGGTCCAAACGGGCCAGAAAGAAGCAACAACGCTGATTCAACCAATGAGCCCATTATAAGAATAACCAGGAGTGTCAATCTCGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCAGGATAACATGAATGGAAGGTCAACACCAAATTGAGG-CATTTATGTTAGTG-----AGCCTCATTCTCGAGTTGATTAACATCTCAGTCCTTTTTACTTGTTGCTTTTTTGGTTAACTGCACTCTTGCATTTGAATTGATCATCTTTCCCTCAACTTGATTTGTACATTAAAGATTTAAAACTCAGGTTTGCAGTGTAATCTTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="21699" stop="20863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21399" g_stop="21163" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21399" e_stop="21163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTC-TTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="22224" stop="20955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21924" g_stop="21633" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21632" i_stop="21482" i_length="151">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21481" g_stop="21255" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="515" r_length="226" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21924" e_stop="21633"/>
          <exon e_start="21481" e_stop="21255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTAC-TTGTTAATGATGATGCCTTGGTACAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCAACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATTGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGATGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTTCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACTGACACGAGGGGAATAAAGATAATGAATCTTGAAAGATGATAATATATTCAAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTC-ACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAG.......................................................................................................................................................TATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGC-AATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242274" ref_strand="+" ref_description="SGN-E242274 [cLEE-3-A13]">
      <seq>tgagtcgacggatcccacgacggaccgtcatgagcacgacggaccgtggagggtgtctcgttccaaaacacttagaattctgaaatttgggtactgagatcgactctctgaacttcgcgacgaaatggcacgacggaccgtcacaggcatgacgggctgtcacaaacccttagtgaaatttaatctctgaactttgtgacggaagcagcaggacggaccgtcgcaggcacgactggtcgtcacagactgcgtaaccctgactgggtcggatttttgttaaatgttttaaggggcgttttggactattcctgcttataattatgaaattagtggtttaatgttaataattcaattacttggggggttgaaggagataaccttgaattaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="24240" stop="25229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24540" g_stop="24929" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E242274" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24540" e_stop="24929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACGACGGATTCCACGACGGACCGTCATGGGCACGACGGACCGTCGAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGGCCGTCACAGACCCTTCAAAGAATTGAGTCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGACTGCGTAATCCCAGGCTGGGTCGGATTTCTGTTAAATGTTTTAAGGGGCGTTTTGGGCTATTCCTGCTTATAATTATAAAGTTAGTGGTTGAATATTAATAATTCAATTTCTT-GAGGGTTAAAAGAGATAACCTTGAATCAATT</genome_strand>
        <mrna_strand>TGAGTCGACGGATCCCACGACGGACCGTCATGAGCACGACGGACCGTGGAGGGTGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAGATCGACTCTCTGAACTTCGCGACGAAATGGCACGACGGACCGTCACAGGCATGACGGGCTGTCACAAACCCTTAGTGAAATTTAATCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACTGGTCGTCACAGACTGCGTAA-CCCTGACTGGGTCGGATTTTTGTTAAATGTTTTAAGGGGCGTTTTGGACTATTCCTGCTTATAATTATGAAATTAGTGGTTTAATGTTAATAATTCAATTACTTGGGGGGTTGAAGGAGATAACCTTGAATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345032" ref_strand="+" ref_description="SGN-E345032 [cTOF-22-B16]">
      <seq>ttggcaagcaaagtcggagacgcagtaagcaaagcgctgaacagcaacaaagtgttgaatgtagtgttaatgagtgcatttggattgctatgtatgagatcagtgcagcaacagaagaatatggaagttcttgaagcagaaaaggactctttgctcaaatctaataaagctatgaagaaggatatgtgggattggaagcagcagctttttgctgaagctgagttacccaatccacttattccactctctaagattaaagccatttatggagacgttcaaaccaccacatcgacttctggtggagatgctcataacggagatggaaaatcacctgcaggagtatttgttatctgaaagccattgttgtagcttgttcatgacgaagcaagttgttttctggcaaaataacaagcggccactcagatctgtgaaatatcatgcttcagttagtagaatgggaagcttgggaaagtggtgtaattctgagttttctcttggaacttagtgatttacagttgttttttcccttctcctctctcatgtagtccgttaggaggtcgagatccaagtttaatttgtggtgacactgcaccacttatctacttttgttgctgggactatgccatgagctgagtttcactatctatcaaccaaatatttatgagttcatgcatttggatgtttgattgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="28621" stop="35310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28921" g_stop="29218" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29219" i_stop="34615" i_length="5397">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34616" g_stop="35010" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="693" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E345032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28921" e_stop="29218"/>
          <exon e_start="34616" e_stop="35010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCAAGCAAAGTCGGAGACGCAGTAAGCAAAGCGCTGAACAGCAACAAAGTGTTGAATGTAGTGTTAATGAGTGCATTTGGATTGCTATGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTGGTATGACTTTTTTCCTGTTTCTTTCGGAATCATAGCATTTGGGTTCTCTGGGAATTGCAGAAATTAGCTTTACTGCAAATGATTTTGTGGGTTTGGCTTGTTTGGATTTGGGTATCAATGATTTAATCTGTACTTTGCTCTATCAAAAATGGTCACTAATTAGAGGAATAGGGCTGAAAGAAATTTAAGGCGGTTTGGGTTTAGTCTGATGTTAGGGTTTAGTTTAGTCTGATGTTAGGGTTTAGGGTTTTACTTCCCATAAGTTTGCTGGGTCAACTTGTTAGATAAATTATGATTACAAATTTGAGGGATTGAGATTTGGTTGGTTACTGGAAATAAGAACTTGATGGGGTTTCCATTGTAAGTGTCCCGGTTTTGCTGCTTCAAAGAGTTAAGATTTCTGTATTAGATCAGGTCTGATACAAGTATTCATTTGGTTTTGTGGCTGTTATTATATTCAACGAAATTTTACGTGGACAGGTGGAACTTAGAGGTTTATCCAAGATATAGCAAGGTCTAGACTTGAGCTAGTTACTAAAAGGATTATAAATATAGCAGCACTTACCAAGGATAAGTTCTTTTAGAAATCTCAGGTGGATGAACCCTAGTTTGCTTTATAGAAATGTGATTACTTGAAATTGTATGGGTGCAAGAGCTGATGAAGCAAGCGCTCACCTGGTGTCGTAGCCCCTATTGATATAGTCTTTTGCTACAAACAGTCAAAGCTGTATGATGGTGGAATGGAATTTCATAGAAGTAAAAACCAGATGCATTTATAAGTGTATCATTTCTACATGTATAGATGAGTGGGTGTTATTTGTAGAAAATCATTTCCTCTTGAAAGGTTTTCTACTTTTGGTATACTTGTCGTATATGGGCAAAGCTTTTACCCTTTTCTAATGAAATTGATTAGTTCAACAAAAAATTAAAATTTAGTGTATCATTTCTTTATAACTATATTAGACTGTTAGTGGGTGAATGTTGTTCATTCCATTAATTGGATCTTTCGCCTGCTCTTGCAGCATTATCCATGTCCTTCCTTATCATCGTTCATCATATGCCACTTTTGGTGTTCCTTTGCATTTATTGAAGTAAATCTCTCTGGACTATCATTTATTCAAGAATCAAGATGTTGGGAAGCAAAATTCTTCAAGCTTTATGATAAAATAGTAAACACACCATTCGTGTAACTAATGAAATGATAAATTCAAGTAATGTTTCTGCAAAAATTGGTTAAATTACCAAATAAAGGGATTCTGCTATTAGAAGTCGTATATATGACGTATTAGAAAAGATAATCAAAGTACGAAATTTTGTAGTATTACCTCTGCTTAATGTTACCATTTTTGAAATAATAAAAACCCACTTAACTTATAATGGTTATCTTTCTATTATTTTATACTGTTTAATTTTTGCTTCTCTAGAATCGGACCATTGAGAATCTTCCAAAATTGCAAAACCTTGATAATCTTTTCCTCTCCCTCCTTTCTATTCTCCTTCACATATTACAATTCTTTTAGACAGTTTTTGGTGATCATCCACTCCGCTGATTAAGCCTTTCTTCATCAATAGAGAAATCATGTCATTGTACACCAAATTATGTTTCTAGCTACGGACAATCATGGAGCATTAGCAATAGGTGGACGATAAGTCAAACAGGGAGTCTCTTGCCTTTTCGATATTTTAACAGACACAAGATATTTGAGAATTCTGACTCAACAAGAAAAAACAAGAAGAATTTTCAGAGCACACAAGATTATAGCCTAGTAGTATATGAAGTGGGTGGAAACCTTGGGAGCAGGGTTCAAGTTCCAGCAATGACAAAAATCAACTTGTTGGCAGATTTATTCTATACTTGTGCGCTGGTGGGAATCATGTACCCTGTGGTAGTAAAGCTGTAGAATAATTGGTCCAAACACCACCATTATAAAGAAAAAGAGAAAAACAAGATTCATGATGGGCCTAGATTCCTCATTTGACATTAACACCAGAAAGGTAGACATTGCCGATAAATATGGAGATTCATTGCGAAGAGTCCAAATGCCCTGCTAGAAAATGCTCAATAGTCTACAAAGCCAGTCTTTTAAAGAAACCTCTCCTAACAGAAAATGCAAGTGTCATTAATGAAAAATTGTGATAGATGAGAGTTGTACCATCCTTAGGATAAAGTTCCTCAAAAGATGTCTAGTAGGAACATCCTAACATGTTAACACATGCGCTTAATGGAGTGGTTGACTCCAGGAGGTAGGGGAAGTTGGAAATGTTGAGCATATTAGACTTCGACAGCTCATATGATCATGTGAATTGGGAGTTCTTGGATTTCATAACGCTGTAGACAGGATGTGGATTAAGTTCTCCCTTTCAAGGACCAGATTCTCAGTCCTAGTGAATGGTAGACTTTTGGGAAAAAAGAAAAAGTTGTGAAGATCTTCTCAATATTTTATTGCTGCAATGGTTTATAAATTCATAGCTTATTTGCAAAATGTAATAAAGTACCACATGAAATTTTTTGATGAAGTAATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACATACAGAAAACCTTTGTAGCTGCATTACATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACTTACAGAAAACCTTCGTAGCTGCATTATATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGGGTAATCTACCAGAGAAGTAGTTTTCCACATAAATAGAAACATCAGCCATTGGGCCTTGATGTAATAATTTGGAGTTGACGAACCATCAAAACATCTTTCTGTTCCTCTTTGTCCACATACTTGCAGGTATCATTTCCAGATTTCCTTGATGGCCTTATCAACTTTCCAACTACTCCAACCTTCATTGGACTCTTAACTGATCTGTGGGTTGCGCAGCTGAGACCAAAAATAGAGTAGAACAAGCACCATATGTGACTAGCAATTTTGCAGTGGAGGAATAAGTGACTGTTGGTTTCTATCTCCTGTTGACACATGTAGCATCCGTTGACTATTTGGTCGCTCCTTTTCTCGAGATTGTCTTGGGTGAGGCATGCTTTATAGTGTCCAGCAGAAACATTTAATTTTTTTGGGCAGCTTAGACTTCCACGGCCAGTAGTTAATCAAATTATTTGTAGCATGAGTTTGCATAACCCGCTTTACCTGAGTACCTGCCATCATTTGCACTGCCCCATCATAACTTATTTGCTGCCTGCAAATTCAATCTGTATCCTTCCAGCCTGGAGATTCCTTTTGGAAAGAAGTTGCTGGTTTTGCCTTCTTTATTCTGAGAGATATGGAGTTTGGCTCACTAGAATTTGAAAAATGTTGTGGAATTCATCCTTGAGGATTGTGTTGTTTAACCAATATCTTTCCTGAATGTGGTGTGTAGACCATTGCCTGGTATTAATTGTGTTCTCTGGAAAGAGTTCCTCCTTAAGCTTGCTATACTCAAATATTTTGTACATAAATTCTTAGCTGAAGGTGTAACATTTATCAATGTAAAACCAGCCTATCACTTTATGAGATCCCGATCCTGCGAGTTTCAAACTGTGGGGAAGGGTAGAGGGACAAGCACATTGTCCACCTAGTTCCATACCATGCATCGTTGACCCTTGGGATTTCTTGGTTATAAGAAAAGAACCTTCTGTTCTTTTTGTTTTCTCGAACTCGGTTTAGTTCTTTTTAGATTTAAATCTTGTGAGTCTGGTGATAGCAAAATTCTTGTAGGCTGTAGCCACTTCTAAATATCTCCTCTTTAAGAGTTTGAGATTTCAAAACTATATTTAGTTCTATCTCTCTTTTATGTATTTTAGGAGATCATGTGCTAACATTTCTATATGATAAATGAAGGACTATGCATTGTACGTTGAATTTTGCAGTAAAAGAATAGTTGGATTTGTGCCACAAATTTGAGCAAGCCAAGATAATCTATGAGTAAATATTTGATTGATGCAAGTTTCTCTTACAAGGCAATCTTAGCAGAAAGACCCCCATTAGTGGCCTCAGTCGAAATGATTAAGAGGATGTGGAAGTTCTCTTTTTCTCTTTGTCTAACAATGACTGGTTGATTGAGAAATCCTGTATAGTGTGTTTTTCTTGGGGTATACCTTCCCTGGGTAAGAAGAGCTAATGATCTCGCTAATACAACAGAGGCAAAAGTTAGATAGAATTTGCATAGAACTTCTCTGAGAGAGAAGAAAAAGTTGTGAACATCTCCCCGATATTGATTCCTGGAGGGTTTTAGCTTCTGACCATCACAATTATTATGTTAGAGACCAAGTATAAACTTGGGCTGAATTGCTTAACTTGTATTTACAGGAAGTAATACATAAAGTTTTCTGTCAATAGCAAAGTTATTCTTCACATAGGATATTTTGGGTAGGAAAAAAAGGGAAAATGGGAGAATAACACACCAGAAAAGTCAACTCAAAGATGGCTTCTGCCTTCTGAGGTAGAATTGGTGGACTGAGACGTCGATGCTAGTGATGGCACTTGAAAGGCTTTTAACGCTGTTTTTTTAAGAAGCAGAATAAAAGTTTGACCTTAAGGGCATCAGATGCTAGTGGCCCTTTCAGGAAGGTGGTGAACACTGAACAAACCCTTAACCTTGTTTTTGCCACAGATCTACCTCAAGTCATTTCTTTTTCTTCTTGAGCTCCTTTTCCTCTGGTGGATGTCAAATAACAACAACTGGCATATTGTGATTGAGTATTGACAATAAAAACCATACAACTTTGAACAGGACTTCATCTGACACAATCTTTTGTAACTGCCCGGAATTAACTTCATATTGTTGCTAATTGTTAAAAGCCTTTTGTTGCTGATATATATATAGACGAGTTCTTAATATGAACTTGGTAATGAACCAAAATCGAGTTCTCATTTGCGGTCTTTGTTATTTTCAGACCAAGAATAGGGAAGAGAAAATTCAGTGTCATCCCGTGAATTAGTGAATTAGGCAGGATCTTTTTTTATTTAGAATAAGAAGCAGTGGATCAATTGCCCCTTGTGCTTTGGTCTAGTGGTAAGATTGCAGCTTGTCATGTGTTATTGGCCCTCGGATTTCTCGGTTATGGAAAAAAAGTGGTGTGTCAATTTTCGAAAATCTTATTGTAAATGTGAAATACTTATAGGATCCTTGAATAACTGAATTTTTCATTGTGGAAATGACTTAATTATTCAATATCTTGTGTTTCATAATCACTGAAGGCAATATAATCCACAAACACTCATCTGCATGCGCGCGCGCACACACTTTGTATAAGTATTATGGAGGGAAGTTGCTACTTACATTGCTTATCATCAAAAACATACAGGTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTC</genome_strand>
        <mrna_strand>TTGGCAAGCAAAGTCGGAGACGCAGTAAGCAAAGCGCTGAACAGCAACAAAGTGTTGAATGTAGTGTTAATGAGTGCATTTGGATTGCTATGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342384" ref_strand="+" ref_description="SGN-E342384 [cTOF-8-N8]">
      <seq>tgtatgagatcagtgcagcaacagaagaatatggaagttcttgaagcagaaaaggactctttgctcaaatctaataaagctatgaagaaggatatgtgggattggaagcagcagctttttgctgaagctgagttacccaatccacttattccactctctaagattaaagccatttatggagacgttcaaaccaccacatcgacttctggtggagatgctcataacggagatggaaaatcacctgcaggagtatttgttatctgaaagccattgttgtagcttgttcatgacgaagcaagttgttttctggcaaaataacaagcggccactcagatctgtgaaatatcatgcttcagttagtagaatgggaagcttgggaaagtggtgtaattctgagttttctcttggaacttagtgatttaccagttgttttttcccttctcctctctcatgtagtccgttaggaggtcgagatccaagtttaattttgtggtgacactgcaccacttatctacttttgttgctgggactatgccatgaggctgagtttcactatctatcaaccaaatatttatgagttcatgcatttgggatgtttgattgattcaccttcagtttaggcatggggtgttctcagcaagataacaatgtaaccagcttttcttagtcactgtgaagatatgatattttttataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="28711" stop="35398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29011" g_stop="29218" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29219" i_stop="34615" i_length="5397">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34616" g_stop="35100" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="698" r_length="490" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E342384" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29011" e_stop="29218"/>
          <exon e_start="34616" e_stop="35100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTGGTATGACTTTTTTCCTGTTTCTTTCGGAATCATAGCATTTGGGTTCTCTGGGAATTGCAGAAATTAGCTTTACTGCAAATGATTTTGTGGGTTTGGCTTGTTTGGATTTGGGTATCAATGATTTAATCTGTACTTTGCTCTATCAAAAATGGTCACTAATTAGAGGAATAGGGCTGAAAGAAATTTAAGGCGGTTTGGGTTTAGTCTGATGTTAGGGTTTAGTTTAGTCTGATGTTAGGGTTTAGGGTTTTACTTCCCATAAGTTTGCTGGGTCAACTTGTTAGATAAATTATGATTACAAATTTGAGGGATTGAGATTTGGTTGGTTACTGGAAATAAGAACTTGATGGGGTTTCCATTGTAAGTGTCCCGGTTTTGCTGCTTCAAAGAGTTAAGATTTCTGTATTAGATCAGGTCTGATACAAGTATTCATTTGGTTTTGTGGCTGTTATTATATTCAACGAAATTTTACGTGGACAGGTGGAACTTAGAGGTTTATCCAAGATATAGCAAGGTCTAGACTTGAGCTAGTTACTAAAAGGATTATAAATATAGCAGCACTTACCAAGGATAAGTTCTTTTAGAAATCTCAGGTGGATGAACCCTAGTTTGCTTTATAGAAATGTGATTACTTGAAATTGTATGGGTGCAAGAGCTGATGAAGCAAGCGCTCACCTGGTGTCGTAGCCCCTATTGATATAGTCTTTTGCTACAAACAGTCAAAGCTGTATGATGGTGGAATGGAATTTCATAGAAGTAAAAACCAGATGCATTTATAAGTGTATCATTTCTACATGTATAGATGAGTGGGTGTTATTTGTAGAAAATCATTTCCTCTTGAAAGGTTTTCTACTTTTGGTATACTTGTCGTATATGGGCAAAGCTTTTACCCTTTTCTAATGAAATTGATTAGTTCAACAAAAAATTAAAATTTAGTGTATCATTTCTTTATAACTATATTAGACTGTTAGTGGGTGAATGTTGTTCATTCCATTAATTGGATCTTTCGCCTGCTCTTGCAGCATTATCCATGTCCTTCCTTATCATCGTTCATCATATGCCACTTTTGGTGTTCCTTTGCATTTATTGAAGTAAATCTCTCTGGACTATCATTTATTCAAGAATCAAGATGTTGGGAAGCAAAATTCTTCAAGCTTTATGATAAAATAGTAAACACACCATTCGTGTAACTAATGAAATGATAAATTCAAGTAATGTTTCTGCAAAAATTGGTTAAATTACCAAATAAAGGGATTCTGCTATTAGAAGTCGTATATATGACGTATTAGAAAAGATAATCAAAGTACGAAATTTTGTAGTATTACCTCTGCTTAATGTTACCATTTTTGAAATAATAAAAACCCACTTAACTTATAATGGTTATCTTTCTATTATTTTATACTGTTTAATTTTTGCTTCTCTAGAATCGGACCATTGAGAATCTTCCAAAATTGCAAAACCTTGATAATCTTTTCCTCTCCCTCCTTTCTATTCTCCTTCACATATTACAATTCTTTTAGACAGTTTTTGGTGATCATCCACTCCGCTGATTAAGCCTTTCTTCATCAATAGAGAAATCATGTCATTGTACACCAAATTATGTTTCTAGCTACGGACAATCATGGAGCATTAGCAATAGGTGGACGATAAGTCAAACAGGGAGTCTCTTGCCTTTTCGATATTTTAACAGACACAAGATATTTGAGAATTCTGACTCAACAAGAAAAAACAAGAAGAATTTTCAGAGCACACAAGATTATAGCCTAGTAGTATATGAAGTGGGTGGAAACCTTGGGAGCAGGGTTCAAGTTCCAGCAATGACAAAAATCAACTTGTTGGCAGATTTATTCTATACTTGTGCGCTGGTGGGAATCATGTACCCTGTGGTAGTAAAGCTGTAGAATAATTGGTCCAAACACCACCATTATAAAGAAAAAGAGAAAAACAAGATTCATGATGGGCCTAGATTCCTCATTTGACATTAACACCAGAAAGGTAGACATTGCCGATAAATATGGAGATTCATTGCGAAGAGTCCAAATGCCCTGCTAGAAAATGCTCAATAGTCTACAAAGCCAGTCTTTTAAAGAAACCTCTCCTAACAGAAAATGCAAGTGTCATTAATGAAAAATTGTGATAGATGAGAGTTGTACCATCCTTAGGATAAAGTTCCTCAAAAGATGTCTAGTAGGAACATCCTAACATGTTAACACATGCGCTTAATGGAGTGGTTGACTCCAGGAGGTAGGGGAAGTTGGAAATGTTGAGCATATTAGACTTCGACAGCTCATATGATCATGTGAATTGGGAGTTCTTGGATTTCATAACGCTGTAGACAGGATGTGGATTAAGTTCTCCCTTTCAAGGACCAGATTCTCAGTCCTAGTGAATGGTAGACTTTTGGGAAAAAAGAAAAAGTTGTGAAGATCTTCTCAATATTTTATTGCTGCAATGGTTTATAAATTCATAGCTTATTTGCAAAATGTAATAAAGTACCACATGAAATTTTTTGATGAAGTAATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACATACAGAAAACCTTTGTAGCTGCATTACATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACTTACAGAAAACCTTCGTAGCTGCATTATATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGGGTAATCTACCAGAGAAGTAGTTTTCCACATAAATAGAAACATCAGCCATTGGGCCTTGATGTAATAATTTGGAGTTGACGAACCATCAAAACATCTTTCTGTTCCTCTTTGTCCACATACTTGCAGGTATCATTTCCAGATTTCCTTGATGGCCTTATCAACTTTCCAACTACTCCAACCTTCATTGGACTCTTAACTGATCTGTGGGTTGCGCAGCTGAGACCAAAAATAGAGTAGAACAAGCACCATATGTGACTAGCAATTTTGCAGTGGAGGAATAAGTGACTGTTGGTTTCTATCTCCTGTTGACACATGTAGCATCCGTTGACTATTTGGTCGCTCCTTTTCTCGAGATTGTCTTGGGTGAGGCATGCTTTATAGTGTCCAGCAGAAACATTTAATTTTTTTGGGCAGCTTAGACTTCCACGGCCAGTAGTTAATCAAATTATTTGTAGCATGAGTTTGCATAACCCGCTTTACCTGAGTACCTGCCATCATTTGCACTGCCCCATCATAACTTATTTGCTGCCTGCAAATTCAATCTGTATCCTTCCAGCCTGGAGATTCCTTTTGGAAAGAAGTTGCTGGTTTTGCCTTCTTTATTCTGAGAGATATGGAGTTTGGCTCACTAGAATTTGAAAAATGTTGTGGAATTCATCCTTGAGGATTGTGTTGTTTAACCAATATCTTTCCTGAATGTGGTGTGTAGACCATTGCCTGGTATTAATTGTGTTCTCTGGAAAGAGTTCCTCCTTAAGCTTGCTATACTCAAATATTTTGTACATAAATTCTTAGCTGAAGGTGTAACATTTATCAATGTAAAACCAGCCTATCACTTTATGAGATCCCGATCCTGCGAGTTTCAAACTGTGGGGAAGGGTAGAGGGACAAGCACATTGTCCACCTAGTTCCATACCATGCATCGTTGACCCTTGGGATTTCTTGGTTATAAGAAAAGAACCTTCTGTTCTTTTTGTTTTCTCGAACTCGGTTTAGTTCTTTTTAGATTTAAATCTTGTGAGTCTGGTGATAGCAAAATTCTTGTAGGCTGTAGCCACTTCTAAATATCTCCTCTTTAAGAGTTTGAGATTTCAAAACTATATTTAGTTCTATCTCTCTTTTATGTATTTTAGGAGATCATGTGCTAACATTTCTATATGATAAATGAAGGACTATGCATTGTACGTTGAATTTTGCAGTAAAAGAATAGTTGGATTTGTGCCACAAATTTGAGCAAGCCAAGATAATCTATGAGTAAATATTTGATTGATGCAAGTTTCTCTTACAAGGCAATCTTAGCAGAAAGACCCCCATTAGTGGCCTCAGTCGAAATGATTAAGAGGATGTGGAAGTTCTCTTTTTCTCTTTGTCTAACAATGACTGGTTGATTGAGAAATCCTGTATAGTGTGTTTTTCTTGGGGTATACCTTCCCTGGGTAAGAAGAGCTAATGATCTCGCTAATACAACAGAGGCAAAAGTTAGATAGAATTTGCATAGAACTTCTCTGAGAGAGAAGAAAAAGTTGTGAACATCTCCCCGATATTGATTCCTGGAGGGTTTTAGCTTCTGACCATCACAATTATTATGTTAGAGACCAAGTATAAACTTGGGCTGAATTGCTTAACTTGTATTTACAGGAAGTAATACATAAAGTTTTCTGTCAATAGCAAAGTTATTCTTCACATAGGATATTTTGGGTAGGAAAAAAAGGGAAAATGGGAGAATAACACACCAGAAAAGTCAACTCAAAGATGGCTTCTGCCTTCTGAGGTAGAATTGGTGGACTGAGACGTCGATGCTAGTGATGGCACTTGAAAGGCTTTTAACGCTGTTTTTTTAAGAAGCAGAATAAAAGTTTGACCTTAAGGGCATCAGATGCTAGTGGCCCTTTCAGGAAGGTGGTGAACACTGAACAAACCCTTAACCTTGTTTTTGCCACAGATCTACCTCAAGTCATTTCTTTTTCTTCTTGAGCTCCTTTTCCTCTGGTGGATGTCAAATAACAACAACTGGCATATTGTGATTGAGTATTGACAATAAAAACCATACAACTTTGAACAGGACTTCATCTGACACAATCTTTTGTAACTGCCCGGAATTAACTTCATATTGTTGCTAATTGTTAAAAGCCTTTTGTTGCTGATATATATATAGACGAGTTCTTAATATGAACTTGGTAATGAACCAAAATCGAGTTCTCATTTGCGGTCTTTGTTATTTTCAGACCAAGAATAGGGAAGAGAAAATTCAGTGTCATCCCGTGAATTAGTGAATTAGGCAGGATCTTTTTTTATTTAGAATAAGAAGCAGTGGATCAATTGCCCCTTGTGCTTTGGTCTAGTGGTAAGATTGCAGCTTGTCATGTGTTATTGGCCCTCGGATTTCTCGGTTATGGAAAAAAAGTGGTGTGTCAATTTTCGAAAATCTTATTGTAAATGTGAAATACTTATAGGATCCTTGAATAACTGAATTTTTCATTGTGGAAATGACTTAATTATTCAATATCTTGTGTTTCATAATCACTGAAGGCAATATAATCCACAAACACTCATCTGCATGCGCGCGCGCACACACTTTGTATAAGTATTATGGAGGGAAGTTGCTACTTACATTGCTTATCATCAAAAACATACAGGTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTA-CAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAA-TTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGA-GCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTT-GGATGTTTGATTGATTCCACTTCAGTTTAGGCAT-GGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAACT</genome_strand>
        <mrna_strand>TGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACCAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGGATGTTTGATTGATTCACCTTCAGTTTAGGCATGGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711555" ref_strand="+" ref_description="SGN-E711555 [FB02BC10]">
      <seq>cccataagaatatggaagttcttgaagcagaaaaggactcttccctcaaatctaataaagctatgaagaaggatatgtgggattggaagcagcagctttttgctgaagctgagttacccaatccacttattccactctctaagattaaagccatttatggagacgttcaaaccaccacatcgacttctggtggagatgctcataacggagatggaaaatcacctgcaggagtatttgttatctgaaagccattgttgtagcttgttcatgacgaagcaagttgttttctggcaaaataacaagcggccactcagatctgtgaaatatcatgcttcagttagtagaatgggaagcttgggaaagtggtgtaattctgagttttctcttggaacttagtgatttacagttgttttttcccttctcctctctcatgtagtccgttaggaggtcgagatccaagtttaatttgtggtgacactgcaccacttatctacttttgttgctgggactatgccatgagctgagtttcactatctatcaaccaaatatttatgagttcatgcatttggatgtttgattgattccacttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="28732" stop="63345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29030" g_stop="29218" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29219" i_stop="34615" i_length="5397">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34616" g_stop="35029" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="603" r_length="414" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E711555" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29030" e_stop="29218"/>
          <exon e_start="34616" e_stop="35029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTGGTATGACTTTTTTCCTGTTTCTTTCGGAATCATAGCATTTGGGTTCTCTGGGAATTGCAGAAATTAGCTTTACTGCAAATGATTTTGTGGGTTTGGCTTGTTTGGATTTGGGTATCAATGATTTAATCTGTACTTTGCTCTATCAAAAATGGTCACTAATTAGAGGAATAGGGCTGAAAGAAATTTAAGGCGGTTTGGGTTTAGTCTGATGTTAGGGTTTAGTTTAGTCTGATGTTAGGGTTTAGGGTTTTACTTCCCATAAGTTTGCTGGGTCAACTTGTTAGATAAATTATGATTACAAATTTGAGGGATTGAGATTTGGTTGGTTACTGGAAATAAGAACTTGATGGGGTTTCCATTGTAAGTGTCCCGGTTTTGCTGCTTCAAAGAGTTAAGATTTCTGTATTAGATCAGGTCTGATACAAGTATTCATTTGGTTTTGTGGCTGTTATTATATTCAACGAAATTTTACGTGGACAGGTGGAACTTAGAGGTTTATCCAAGATATAGCAAGGTCTAGACTTGAGCTAGTTACTAAAAGGATTATAAATATAGCAGCACTTACCAAGGATAAGTTCTTTTAGAAATCTCAGGTGGATGAACCCTAGTTTGCTTTATAGAAATGTGATTACTTGAAATTGTATGGGTGCAAGAGCTGATGAAGCAAGCGCTCACCTGGTGTCGTAGCCCCTATTGATATAGTCTTTTGCTACAAACAGTCAAAGCTGTATGATGGTGGAATGGAATTTCATAGAAGTAAAAACCAGATGCATTTATAAGTGTATCATTTCTACATGTATAGATGAGTGGGTGTTATTTGTAGAAAATCATTTCCTCTTGAAAGGTTTTCTACTTTTGGTATACTTGTCGTATATGGGCAAAGCTTTTACCCTTTTCTAATGAAATTGATTAGTTCAACAAAAAATTAAAATTTAGTGTATCATTTCTTTATAACTATATTAGACTGTTAGTGGGTGAATGTTGTTCATTCCATTAATTGGATCTTTCGCCTGCTCTTGCAGCATTATCCATGTCCTTCCTTATCATCGTTCATCATATGCCACTTTTGGTGTTCCTTTGCATTTATTGAAGTAAATCTCTCTGGACTATCATTTATTCAAGAATCAAGATGTTGGGAAGCAAAATTCTTCAAGCTTTATGATAAAATAGTAAACACACCATTCGTGTAACTAATGAAATGATAAATTCAAGTAATGTTTCTGCAAAAATTGGTTAAATTACCAAATAAAGGGATTCTGCTATTAGAAGTCGTATATATGACGTATTAGAAAAGATAATCAAAGTACGAAATTTTGTAGTATTACCTCTGCTTAATGTTACCATTTTTGAAATAATAAAAACCCACTTAACTTATAATGGTTATCTTTCTATTATTTTATACTGTTTAATTTTTGCTTCTCTAGAATCGGACCATTGAGAATCTTCCAAAATTGCAAAACCTTGATAATCTTTTCCTCTCCCTCCTTTCTATTCTCCTTCACATATTACAATTCTTTTAGACAGTTTTTGGTGATCATCCACTCCGCTGATTAAGCCTTTCTTCATCAATAGAGAAATCATGTCATTGTACACCAAATTATGTTTCTAGCTACGGACAATCATGGAGCATTAGCAATAGGTGGACGATAAGTCAAACAGGGAGTCTCTTGCCTTTTCGATATTTTAACAGACACAAGATATTTGAGAATTCTGACTCAACAAGAAAAAACAAGAAGAATTTTCAGAGCACACAAGATTATAGCCTAGTAGTATATGAAGTGGGTGGAAACCTTGGGAGCAGGGTTCAAGTTCCAGCAATGACAAAAATCAACTTGTTGGCAGATTTATTCTATACTTGTGCGCTGGTGGGAATCATGTACCCTGTGGTAGTAAAGCTGTAGAATAATTGGTCCAAACACCACCATTATAAAGAAAAAGAGAAAAACAAGATTCATGATGGGCCTAGATTCCTCATTTGACATTAACACCAGAAAGGTAGACATTGCCGATAAATATGGAGATTCATTGCGAAGAGTCCAAATGCCCTGCTAGAAAATGCTCAATAGTCTACAAAGCCAGTCTTTTAAAGAAACCTCTCCTAACAGAAAATGCAAGTGTCATTAATGAAAAATTGTGATAGATGAGAGTTGTACCATCCTTAGGATAAAGTTCCTCAAAAGATGTCTAGTAGGAACATCCTAACATGTTAACACATGCGCTTAATGGAGTGGTTGACTCCAGGAGGTAGGGGAAGTTGGAAATGTTGAGCATATTAGACTTCGACAGCTCATATGATCATGTGAATTGGGAGTTCTTGGATTTCATAACGCTGTAGACAGGATGTGGATTAAGTTCTCCCTTTCAAGGACCAGATTCTCAGTCCTAGTGAATGGTAGACTTTTGGGAAAAAAGAAAAAGTTGTGAAGATCTTCTCAATATTTTATTGCTGCAATGGTTTATAAATTCATAGCTTATTTGCAAAATGTAATAAAGTACCACATGAAATTTTTTGATGAAGTAATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACATACAGAAAACCTTTGTAGCTGCATTACATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACTTACAGAAAACCTTCGTAGCTGCATTATATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGGGTAATCTACCAGAGAAGTAGTTTTCCACATAAATAGAAACATCAGCCATTGGGCCTTGATGTAATAATTTGGAGTTGACGAACCATCAAAACATCTTTCTGTTCCTCTTTGTCCACATACTTGCAGGTATCATTTCCAGATTTCCTTGATGGCCTTATCAACTTTCCAACTACTCCAACCTTCATTGGACTCTTAACTGATCTGTGGGTTGCGCAGCTGAGACCAAAAATAGAGTAGAACAAGCACCATATGTGACTAGCAATTTTGCAGTGGAGGAATAAGTGACTGTTGGTTTCTATCTCCTGTTGACACATGTAGCATCCGTTGACTATTTGGTCGCTCCTTTTCTCGAGATTGTCTTGGGTGAGGCATGCTTTATAGTGTCCAGCAGAAACATTTAATTTTTTTGGGCAGCTTAGACTTCCACGGCCAGTAGTTAATCAAATTATTTGTAGCATGAGTTTGCATAACCCGCTTTACCTGAGTACCTGCCATCATTTGCACTGCCCCATCATAACTTATTTGCTGCCTGCAAATTCAATCTGTATCCTTCCAGCCTGGAGATTCCTTTTGGAAAGAAGTTGCTGGTTTTGCCTTCTTTATTCTGAGAGATATGGAGTTTGGCTCACTAGAATTTGAAAAATGTTGTGGAATTCATCCTTGAGGATTGTGTTGTTTAACCAATATCTTTCCTGAATGTGGTGTGTAGACCATTGCCTGGTATTAATTGTGTTCTCTGGAAAGAGTTCCTCCTTAAGCTTGCTATACTCAAATATTTTGTACATAAATTCTTAGCTGAAGGTGTAACATTTATCAATGTAAAACCAGCCTATCACTTTATGAGATCCCGATCCTGCGAGTTTCAAACTGTGGGGAAGGGTAGAGGGACAAGCACATTGTCCACCTAGTTCCATACCATGCATCGTTGACCCTTGGGATTTCTTGGTTATAAGAAAAGAACCTTCTGTTCTTTTTGTTTTCTCGAACTCGGTTTAGTTCTTTTTAGATTTAAATCTTGTGAGTCTGGTGATAGCAAAATTCTTGTAGGCTGTAGCCACTTCTAAATATCTCCTCTTTAAGAGTTTGAGATTTCAAAACTATATTTAGTTCTATCTCTCTTTTATGTATTTTAGGAGATCATGTGCTAACATTTCTATATGATAAATGAAGGACTATGCATTGTACGTTGAATTTTGCAGTAAAAGAATAGTTGGATTTGTGCCACAAATTTGAGCAAGCCAAGATAATCTATGAGTAAATATTTGATTGATGCAAGTTTCTCTTACAAGGCAATCTTAGCAGAAAGACCCCCATTAGTGGCCTCAGTCGAAATGATTAAGAGGATGTGGAAGTTCTCTTTTTCTCTTTGTCTAACAATGACTGGTTGATTGAGAAATCCTGTATAGTGTGTTTTTCTTGGGGTATACCTTCCCTGGGTAAGAAGAGCTAATGATCTCGCTAATACAACAGAGGCAAAAGTTAGATAGAATTTGCATAGAACTTCTCTGAGAGAGAAGAAAAAGTTGTGAACATCTCCCCGATATTGATTCCTGGAGGGTTTTAGCTTCTGACCATCACAATTATTATGTTAGAGACCAAGTATAAACTTGGGCTGAATTGCTTAACTTGTATTTACAGGAAGTAATACATAAAGTTTTCTGTCAATAGCAAAGTTATTCTTCACATAGGATATTTTGGGTAGGAAAAAAAGGGAAAATGGGAGAATAACACACCAGAAAAGTCAACTCAAAGATGGCTTCTGCCTTCTGAGGTAGAATTGGTGGACTGAGACGTCGATGCTAGTGATGGCACTTGAAAGGCTTTTAACGCTGTTTTTTTAAGAAGCAGAATAAAAGTTTGACCTTAAGGGCATCAGATGCTAGTGGCCCTTTCAGGAAGGTGGTGAACACTGAACAAACCCTTAACCTTGTTTTTGCCACAGATCTACCTCAAGTCATTTCTTTTTCTTCTTGAGCTCCTTTTCCTCTGGTGGATGTCAAATAACAACAACTGGCATATTGTGATTGAGTATTGACAATAAAAACCATACAACTTTGAACAGGACTTCATCTGACACAATCTTTTGTAACTGCCCGGAATTAACTTCATATTGTTGCTAATTGTTAAAAGCCTTTTGTTGCTGATATATATATAGACGAGTTCTTAATATGAACTTGGTAATGAACCAAAATCGAGTTCTCATTTGCGGTCTTTGTTATTTTCAGACCAAGAATAGGGAAGAGAAAATTCAGTGTCATCCCGTGAATTAGTGAATTAGGCAGGATCTTTTTTTATTTAGAATAAGAAGCAGTGGATCAATTGCCCCTTGTGCTTTGGTCTAGTGGTAAGATTGCAGCTTGTCATGTGTTATTGGCCCTCGGATTTCTCGGTTATGGAAAAAAAGTGGTGTGTCAATTTTCGAAAATCTTATTGTAAATGTGAAATACTTATAGGATCCTTGAATAACTGAATTTTTCATTGTGGAAATGACTTAATTATTCAATATCTTGTGTTTCATAATCACTGAAGGCAATATAATCCACAAACACTCATCTGCATGCGCGCGCGCACACACTTTGTATAAGTATTATGGAGGGAAGTTGCTACTTACATTGCTTATCATCAAAAACATACAGGTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGG</genome_strand>
        <mrna_strand>CCCATAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTCCCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342885" ref_strand="+" ref_description="SGN-E342885 [cTOF-11-E15]">
      <seq>ttcttgaagcagaaaaggactctttgctcaaatctaataaagctatgaagaaggatatgtgggattggaagcagcagctttttgctgaagctgagttacccaatccacttattccactctctaagattaaagccatttatggagacgttcaaaccaccacatcgacttctggtggagatgctcataacggagatggaaaatcacctgcaggagtatttgttatctgaaagccattgttgtagcttgttcatgacgaagcaagttgttttctggcaaaataacaagcggccactcagatctgtgaaatatcatgcttcagttagtagaatgggaagcttgggaaagtggtgtaattctgagttttctcttggaacttagtgatttacagttgttttttcccttctcctctctcatgtagtccgttaggaggtcgagatccaagtttaatttgtggtgacactgcaccacttatctacttttgttgctgggacctatgccatgagctgagtttcactatctatcaaccaaatattttatgagttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="28748" stop="35286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29048" g_stop="29218" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29219" i_stop="34615" i_length="5397">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34616" g_stop="34977" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="534" r_length="363" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="556"/>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E342885" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29048" e_stop="29218"/>
          <exon e_start="34616" e_stop="34977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTGGTATGACTTTTTTCCTGTTTCTTTCGGAATCATAGCATTTGGGTTCTCTGGGAATTGCAGAAATTAGCTTTACTGCAAATGATTTTGTGGGTTTGGCTTGTTTGGATTTGGGTATCAATGATTTAATCTGTACTTTGCTCTATCAAAAATGGTCACTAATTAGAGGAATAGGGCTGAAAGAAATTTAAGGCGGTTTGGGTTTAGTCTGATGTTAGGGTTTAGTTTAGTCTGATGTTAGGGTTTAGGGTTTTACTTCCCATAAGTTTGCTGGGTCAACTTGTTAGATAAATTATGATTACAAATTTGAGGGATTGAGATTTGGTTGGTTACTGGAAATAAGAACTTGATGGGGTTTCCATTGTAAGTGTCCCGGTTTTGCTGCTTCAAAGAGTTAAGATTTCTGTATTAGATCAGGTCTGATACAAGTATTCATTTGGTTTTGTGGCTGTTATTATATTCAACGAAATTTTACGTGGACAGGTGGAACTTAGAGGTTTATCCAAGATATAGCAAGGTCTAGACTTGAGCTAGTTACTAAAAGGATTATAAATATAGCAGCACTTACCAAGGATAAGTTCTTTTAGAAATCTCAGGTGGATGAACCCTAGTTTGCTTTATAGAAATGTGATTACTTGAAATTGTATGGGTGCAAGAGCTGATGAAGCAAGCGCTCACCTGGTGTCGTAGCCCCTATTGATATAGTCTTTTGCTACAAACAGTCAAAGCTGTATGATGGTGGAATGGAATTTCATAGAAGTAAAAACCAGATGCATTTATAAGTGTATCATTTCTACATGTATAGATGAGTGGGTGTTATTTGTAGAAAATCATTTCCTCTTGAAAGGTTTTCTACTTTTGGTATACTTGTCGTATATGGGCAAAGCTTTTACCCTTTTCTAATGAAATTGATTAGTTCAACAAAAAATTAAAATTTAGTGTATCATTTCTTTATAACTATATTAGACTGTTAGTGGGTGAATGTTGTTCATTCCATTAATTGGATCTTTCGCCTGCTCTTGCAGCATTATCCATGTCCTTCCTTATCATCGTTCATCATATGCCACTTTTGGTGTTCCTTTGCATTTATTGAAGTAAATCTCTCTGGACTATCATTTATTCAAGAATCAAGATGTTGGGAAGCAAAATTCTTCAAGCTTTATGATAAAATAGTAAACACACCATTCGTGTAACTAATGAAATGATAAATTCAAGTAATGTTTCTGCAAAAATTGGTTAAATTACCAAATAAAGGGATTCTGCTATTAGAAGTCGTATATATGACGTATTAGAAAAGATAATCAAAGTACGAAATTTTGTAGTATTACCTCTGCTTAATGTTACCATTTTTGAAATAATAAAAACCCACTTAACTTATAATGGTTATCTTTCTATTATTTTATACTGTTTAATTTTTGCTTCTCTAGAATCGGACCATTGAGAATCTTCCAAAATTGCAAAACCTTGATAATCTTTTCCTCTCCCTCCTTTCTATTCTCCTTCACATATTACAATTCTTTTAGACAGTTTTTGGTGATCATCCACTCCGCTGATTAAGCCTTTCTTCATCAATAGAGAAATCATGTCATTGTACACCAAATTATGTTTCTAGCTACGGACAATCATGGAGCATTAGCAATAGGTGGACGATAAGTCAAACAGGGAGTCTCTTGCCTTTTCGATATTTTAACAGACACAAGATATTTGAGAATTCTGACTCAACAAGAAAAAACAAGAAGAATTTTCAGAGCACACAAGATTATAGCCTAGTAGTATATGAAGTGGGTGGAAACCTTGGGAGCAGGGTTCAAGTTCCAGCAATGACAAAAATCAACTTGTTGGCAGATTTATTCTATACTTGTGCGCTGGTGGGAATCATGTACCCTGTGGTAGTAAAGCTGTAGAATAATTGGTCCAAACACCACCATTATAAAGAAAAAGAGAAAAACAAGATTCATGATGGGCCTAGATTCCTCATTTGACATTAACACCAGAAAGGTAGACATTGCCGATAAATATGGAGATTCATTGCGAAGAGTCCAAATGCCCTGCTAGAAAATGCTCAATAGTCTACAAAGCCAGTCTTTTAAAGAAACCTCTCCTAACAGAAAATGCAAGTGTCATTAATGAAAAATTGTGATAGATGAGAGTTGTACCATCCTTAGGATAAAGTTCCTCAAAAGATGTCTAGTAGGAACATCCTAACATGTTAACACATGCGCTTAATGGAGTGGTTGACTCCAGGAGGTAGGGGAAGTTGGAAATGTTGAGCATATTAGACTTCGACAGCTCATATGATCATGTGAATTGGGAGTTCTTGGATTTCATAACGCTGTAGACAGGATGTGGATTAAGTTCTCCCTTTCAAGGACCAGATTCTCAGTCCTAGTGAATGGTAGACTTTTGGGAAAAAAGAAAAAGTTGTGAAGATCTTCTCAATATTTTATTGCTGCAATGGTTTATAAATTCATAGCTTATTTGCAAAATGTAATAAAGTACCACATGAAATTTTTTGATGAAGTAATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACATACAGAAAACCTTTGTAGCTGCATTACATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACTTACAGAAAACCTTCGTAGCTGCATTATATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGGGTAATCTACCAGAGAAGTAGTTTTCCACATAAATAGAAACATCAGCCATTGGGCCTTGATGTAATAATTTGGAGTTGACGAACCATCAAAACATCTTTCTGTTCCTCTTTGTCCACATACTTGCAGGTATCATTTCCAGATTTCCTTGATGGCCTTATCAACTTTCCAACTACTCCAACCTTCATTGGACTCTTAACTGATCTGTGGGTTGCGCAGCTGAGACCAAAAATAGAGTAGAACAAGCACCATATGTGACTAGCAATTTTGCAGTGGAGGAATAAGTGACTGTTGGTTTCTATCTCCTGTTGACACATGTAGCATCCGTTGACTATTTGGTCGCTCCTTTTCTCGAGATTGTCTTGGGTGAGGCATGCTTTATAGTGTCCAGCAGAAACATTTAATTTTTTTGGGCAGCTTAGACTTCCACGGCCAGTAGTTAATCAAATTATTTGTAGCATGAGTTTGCATAACCCGCTTTACCTGAGTACCTGCCATCATTTGCACTGCCCCATCATAACTTATTTGCTGCCTGCAAATTCAATCTGTATCCTTCCAGCCTGGAGATTCCTTTTGGAAAGAAGTTGCTGGTTTTGCCTTCTTTATTCTGAGAGATATGGAGTTTGGCTCACTAGAATTTGAAAAATGTTGTGGAATTCATCCTTGAGGATTGTGTTGTTTAACCAATATCTTTCCTGAATGTGGTGTGTAGACCATTGCCTGGTATTAATTGTGTTCTCTGGAAAGAGTTCCTCCTTAAGCTTGCTATACTCAAATATTTTGTACATAAATTCTTAGCTGAAGGTGTAACATTTATCAATGTAAAACCAGCCTATCACTTTATGAGATCCCGATCCTGCGAGTTTCAAACTGTGGGGAAGGGTAGAGGGACAAGCACATTGTCCACCTAGTTCCATACCATGCATCGTTGACCCTTGGGATTTCTTGGTTATAAGAAAAGAACCTTCTGTTCTTTTTGTTTTCTCGAACTCGGTTTAGTTCTTTTTAGATTTAAATCTTGTGAGTCTGGTGATAGCAAAATTCTTGTAGGCTGTAGCCACTTCTAAATATCTCCTCTTTAAGAGTTTGAGATTTCAAAACTATATTTAGTTCTATCTCTCTTTTATGTATTTTAGGAGATCATGTGCTAACATTTCTATATGATAAATGAAGGACTATGCATTGTACGTTGAATTTTGCAGTAAAAGAATAGTTGGATTTGTGCCACAAATTTGAGCAAGCCAAGATAATCTATGAGTAAATATTTGATTGATGCAAGTTTCTCTTACAAGGCAATCTTAGCAGAAAGACCCCCATTAGTGGCCTCAGTCGAAATGATTAAGAGGATGTGGAAGTTCTCTTTTTCTCTTTGTCTAACAATGACTGGTTGATTGAGAAATCCTGTATAGTGTGTTTTTCTTGGGGTATACCTTCCCTGGGTAAGAAGAGCTAATGATCTCGCTAATACAACAGAGGCAAAAGTTAGATAGAATTTGCATAGAACTTCTCTGAGAGAGAAGAAAAAGTTGTGAACATCTCCCCGATATTGATTCCTGGAGGGTTTTAGCTTCTGACCATCACAATTATTATGTTAGAGACCAAGTATAAACTTGGGCTGAATTGCTTAACTTGTATTTACAGGAAGTAATACATAAAGTTTTCTGTCAATAGCAAAGTTATTCTTCACATAGGATATTTTGGGTAGGAAAAAAAGGGAAAATGGGAGAATAACACACCAGAAAAGTCAACTCAAAGATGGCTTCTGCCTTCTGAGGTAGAATTGGTGGACTGAGACGTCGATGCTAGTGATGGCACTTGAAAGGCTTTTAACGCTGTTTTTTTAAGAAGCAGAATAAAAGTTTGACCTTAAGGGCATCAGATGCTAGTGGCCCTTTCAGGAAGGTGGTGAACACTGAACAAACCCTTAACCTTGTTTTTGCCACAGATCTACCTCAAGTCATTTCTTTTTCTTCTTGAGCTCCTTTTCCTCTGGTGGATGTCAAATAACAACAACTGGCATATTGTGATTGAGTATTGACAATAAAAACCATACAACTTTGAACAGGACTTCATCTGACACAATCTTTTGTAACTGCCCGGAATTAACTTCATATTGTTGCTAATTGTTAAAAGCCTTTTGTTGCTGATATATATATAGACGAGTTCTTAATATGAACTTGGTAATGAACCAAAATCGAGTTCTCATTTGCGGTCTTTGTTATTTTCAGACCAAGAATAGGGAAGAGAAAATTCAGTGTCATCCCGTGAATTAGTGAATTAGGCAGGATCTTTTTTTATTTAGAATAAGAAGCAGTGGATCAATTGCCCCTTGTGCTTTGGTCTAGTGGTAAGATTGCAGCTTGTCATGTGTTATTGGCCCTCGGATTTCTCGGTTATGGAAAAAAAGTGGTGTGTCAATTTTCGAAAATCTTATTGTAAATGTGAAATACTTATAGGATCCTTGAATAACTGAATTTTTCATTGTGGAAATGACTTAATTATTCAATATCTTGTGTTTCATAATCACTGAAGGCAATATAATCCACAAACACTCATCTGCATGCGCGCGCGCACACACTTTGTATAAGTATTATGGAGGGAAGTTGCTACTTACATTGCTTATCATCAAAAACATACAGGTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGA-CTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTT</genome_strand>
        <mrna_strand>TTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACCTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233950" ref_strand="+" ref_description="SGN-E233950 [cLEL-8-H22](-)">
      <seq>atcacctgcaggagtatttgttatctgaaagccattgttgtagcttgttcatgacgaagcaagttgttttctggcaaaataacaagcggccactcagatctgtgaaatatcatgcttcagttagtagaatgggaagcttgggaaagtggtgtaattctgagttttctcttggaacttagtgatttacagttgttttttcccttctcctctctcatgtagtccgttaggaggtcgagatccaagtttaatttgtggtgacactgcaccacttatctacttttgttgctgggactatgccatgagctgagtttcactatctatcaaccaaatatttatgagttcatgcatttggatgtttgattgattccacttcagtttaggcatgggtgttctcagcaagataacaatgtaaccagcttttcttagtcactgtgaagatatgatattttttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="34344" stop="35398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34644" g_stop="35098" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35099" i_stop="35349" i_length="251">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35350" g_stop="35364" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="470" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E233950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34644" e_stop="35098"/>
          <exon e_start="35350" e_stop="35364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAACTTATTTAGTGATCATGCAGCTTACCTCAACTTATTTGGCACTGAGGTTTGATAGTTGTTGTGATCAAATTTGTTACCTAAAGGTGGCTATACAAACAAGTGAAAAATTACCTAAGTAGACATAGCTACAATATTTACAACATACAAGTGTAACTATTATACTTTAAAAATACCATCAAATAATCTTTTCAATGAAATGAGGTTATGTTAACCTGTTGTAAATACCTATCAAATGACATCCTTATATGCAGGAACTAGAACAAAAA</genome_strand>
        <mrna_strand>ATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAA...........................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234372" ref_strand="+" ref_description="SGN-E234372 [cLEL-8-H22](-)">
      <seq>actcagatctgtgaaatatcatgcttcagttagtagaatggaaagcttgggaaagtggtgtaattctgagttttctcttggaacttagtgatttacagttgttttttcccttctcctctctcatgtagtccgttaggaggtcgagatccaagtttaatttgtggtgacactgcaccacttatctacttttgttgctgggactatgccatgagctgagtttcactatctatcaaccaaatatttatgagttcatgcatttggatgtttgattgattccacttcagtttaggcatgggtgttctcagcaagataacaatgtaaccagcttttcttagtcactgtgaagatatgatattttttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="34435" stop="35398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34735" g_stop="35098" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35099" i_stop="35349" i_length="251">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35350" g_stop="35364" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="379" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E234372" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34735" e_stop="35098"/>
          <exon e_start="35350" e_stop="35364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAACTTATTTAGTGATCATGCAGCTTACCTCAACTTATTTGGCACTGAGGTTTGATAGTTGTTGTGATCAAATTTGTTACCTAAAGGTGGCTATACAAACAAGTGAAAAATTACCTAAGTAGACATAGCTACAATATTTACAACATACAAGTGTAACTATTATACTTTAAAAATACCATCAAATAATCTTTTCAATGAAATGAGGTTATGTTAACCTGTTGTAAATACCTATCAAATGACATCCTTATATGCAGGAACTAGAACAAAAA</genome_strand>
        <mrna_strand>ACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGAAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAA...........................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224271" ref_strand="+" ref_description="SGN-E224271 [cLEL-19-B8](-)">
      <seq>ttgttgggtgtacattttatggttatgtaaggcacatcctatcacaacatgctcgagagtctcctcgtacgccagagaacaagatggaatctgttcctctaatncatgagaaagaacaagaccaaagataacccctttaaaatcacagatgaagaggtttcatcaattttgcagaagatagattattcgacccctcacttctccccttatcagtgctttatttactcaaatttttgttctagttcctgcatataaggatgtcatttgataggtatttacaacaggttaacataacctcatttcattgaaaagattatttgatggtatttttaaagtataatagttacacttgtatgttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="35894" stop="16375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35594" g_stop="35218" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E224271" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35594" e_stop="35218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGGGTGTACATTTTATGGTTATGTGAGGCACATCCTATCACAACATGCTCGAGAGTCTCCTCGTACGCCAGAGAACAAGATGGAATCTGTTCCTCTAATACATGAGAAAGAACAAGACCAAAGATAACCCCTTTAAAATCACAGATGAAGAGGTTTCATCAATTTTGCAGAAGATAGATTATTCGACCCCTCACTTCTCCCCTTATCAGTGCTTTATTTACTCAAATTTTTGTTCTAGTTCCTGCATATAAGGATGTCATTTGATAGGTATTTACAACAGGTTAACATAACCTCATTTCATTGAAAAGATTATTTGATGGTATTTTTAAAGTATAATAGTTACACTTGTATGTTGTAAATATTGTAGCTATGT</genome_strand>
        <mrna_strand>TTGTTGGGTGTACATTTTATGGTTATGTAAGGCACATCCTATCACAACATGCTCGAGAGTCTCCTCGTACGCCAGAGAACAAGATGGAATCTGTTCCTCTAATNCATGAGAAAGAACAAGACCAAAGATAACCCCTTTAAAATCACAGATGAAGAGGTTTCATCAATTTTGCAGAAGATAGATTATTCGACCCCTCACTTCTCCCCTTATCAGTGCTTTATTTACTCAAATTTTTGTTCTAGTTCCTGCATATAAGGATGTCATTTGATAGGTATTTACAACAGGTTAACATAACCTCATTTCATTGAAAAGATTATTTGATGGTATTTTTAAAGTATAATAGTTACACTTGTATGTTGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223861" ref_strand="+" ref_description="SGN-E223861 [cLEL-19-B8](-)">
      <seq>caatgggaaagaacaagaccaaagataacccctttaaaatcacagatgaagaggtttcatctattttgcagaaaataaattattcgacccctcacttctccccttatcagtgctttatttactcaaatttttgttctagttcctgcatataaggatgtcatctgataggtatttacaacaggttaacataacctcatttcattgaaaagattatttgatggtatttttaaagtataatagttacacttgtatgttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="35789" stop="16375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35491" g_stop="35218" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E223861" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35491" e_stop="35218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGAGAAAGAACAAGACCAAAGATAACCCCTTTAAAATCACAGATGAAGAGGTTTCATCAATTTTGCAGAAGATAGATTATTCGACCCCTCACTTCTCCCCTTATCAGTGCTTTATTTACTCAAATTTTTGTTCTAGTTCCTGCATATAAGGATGTCATTTGATAGGTATTTACAACAGGTTAACATAACCTCATTTCATTGAAAAGATTATTTGATGGTATTTTTAAAGTATAATAGTTACACTTGTATGTTGTAAATATTGTAGCTATGT</genome_strand>
        <mrna_strand>CAATGGGAAAGAACAAGACCAAAGATAACCCCTTTAAAATCACAGATGAAGAGGTTTCATCTATTTTGCAGAAAATAAATTATTCGACCCCTCACTTCTCCCCTTATCAGTGCTTTATTTACTCAAATTTTTGTTCTAGTTCCTGCATATAAGGATGTCATCTGATAGGTATTTACAACAGGTTAACATAACCTCATTTCATTGAAAAGATTATTTGATGGTATTTTTAAAGTATAATAGTTACACTTGTATGTTGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547510" ref_strand="+" ref_description="SGN-E547510 [TUS-71-G21]">
      <seq>gccctacaggcgtgcctatagttagagaaaaatggaggaaactgtattgtgccaatggactgttattagatccatttttgctattcttcaatggtggggtttcaatgttgctgttattatcatgaacaaatggatctttcagaaattggagtttaaatttcctttgacagtatcttgcgtgcacttcatatgctcagctattggtgcatacctggtaattaaagtgctgaaacttaaaccactcatcgtggtcgaacccacagatcagtggagaagaatttttccgatgtcatttgtgttttgtatcaacatagtcttggggaatgtaagtttgcgatatattcctgtctcttttatgcagaccataaagtcatttactcctgcaacaacagtgattttgcagtggctagtttggaggaagagctttgaatggaggatctggacttccttgattcccattgttggaggaattcttcttacttctattactgagctcagtttcaacacttttggattttgcgctgctttgtttggttgccttgctacttcgacaaaaactattctagcagagtcgttgttgcatggttacaaatttgacagtataaacacagtatactacatggctccctatgcaactatgatactggctctgccgtctttactctttagaggagctggggttgtagaatggttatacactttcccctcagtcgttctatccatgcttcttanttttctctccggagtgctagctttctgcctaacttctctatcttctatgttatcactccacgactgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="38173" stop="35549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37873" g_stop="37732" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37731" i_stop="36774" i_length="958">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36773" g_stop="36524" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="392" r_length="250" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36523" i_stop="36444" i_length="80">
            <donor d_prob="0.914" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36443" g_stop="36236" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="600" r_length="208" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36235" i_stop="36053" i_length="183">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36052" g_stop="35849" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="802" r_length="202" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E547510" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37873" e_stop="37732"/>
          <exon e_start="36773" e_stop="36524"/>
          <exon e_start="36443" e_stop="36236"/>
          <exon e_start="36052" e_stop="35849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTACAGGCGTGCCTATAGTTAGAGAAAAATGGAGGAGAATGTATTGTGCCAATGGAGTGTTGTTAGATCCATTTTTGCTATTCTTCAATGGTGGGGTTTCAATGTTGCTGTTATTATCATGAACAAATGGATCTTTCAGGTATCCTTTTTTTAACAACATTATGATTTTAATTTGCGATCTCAAATTGTGCTTCATTACATGTTTTGTATCTTTAGTTTTTGTATTGTTCGTTTGTTACCTTTTCTTTTATGTCGTCATAACTAATAAAATGTTGCCACATTAAAGTAGAAATTTGTTAGAAGATTTGATTTTGCCACCTGGGTTCTTCTATGTTATGGCCAGAGGCGGAACCAAGATTATGAGTTTTGGGGTTTCAAATCAATTTCACATGATAATATACATATTGTTATTTAATTTTCTAATAGGGAAAATGAACAACTATCCCGTAGGCTGTGACAGAAATTCCAGAGATACAACTTAACTAAACTAAGATACTATTATCCTGAAATTATTTTTTATAAAAAAATTTGTGCACATTTTGTCTTACGTGGCACATTCCGTGACTCCACGCAATTGAGCCGCGTGAAAGATATTTGGATACTACATAAACCAAAAAGGTGCACAAAATTACCAAAAAAATAAGTTTGGGGGTAATAGGAGCTTAGTTTAGTTAATGTATGTCTCTGAGATTTCGGTTATAGTCTACGGGATACTTGTGTATTTTCCCTTTCCAATATTATAGGGTCTACAAATAAGCTAGTGGGTTCGTTCGAACCCATGAACCCCCACCTAGTTGCGCCTCTGAGAAGGTCCAATGCTTCATTGGCGACTCTTGGCTCTTAGAGGGTCCCACACGTACCCGTTCACGTTTCTGAAGAGTCCGAGCAACATTAGCTTGAACCTTCACTCTCTTCAGGCTTCCTCTATGAGTTAAATCACGACGCCTCTAAAATGATAACGGACCTCAATTTGTACACCAGTGTCACTGTTCTTCCACCATTACCTTTCTACAAATTCCGACCCCAGTTTTAGGAGATGTGTAATGCTTTCGTGCAGTATCGTTGCTTATGATTGTGTACTCTACTCATCTTTGCAGAAATTGGTGTTTAAATTTCCTTTGACAGTATCTTGCGTGCACTTCATATGCTCAGCTATTGGTGCATACCTGGTAATTAAAGTGCTGAAACTTAAACCACTCATCGTGGTCGAACCCACAGATCAGTGGAGAAGAATTTTTCCGATGTCATTTGTGTTTTGTATCAACATAGTCTTGGGGAATGTAAGTTTGCGATATATTCCTGTCTCTTTTATGCAGACCGTAAAGTCATTTACTCCTGCTACAACAGGTAAAGCTTGAGCCACAAAGCCCTTCTGAGGCCTCTACCTAATCACTGCTTAGCTTATTTTTTTGCGTATGTTTGAACAGTGATTTTGCAGTGGCTAGTTTGGAGGAAGAGCTTTGAATGGAGGATCTGGACTTCCTTGATTCCCATTGTTGGAGGAATTCTTCTTACTTCTATTACTGAGCTCAGTTTCAACACTTTAGGATTTTGCGCTGCTTTGTTTGGTTGCCTTGCTACTTCTACAAAAACTATTCTAGCAGAGTCGTTGTTGCATGGGTACAAATTTGACAGGTTAGTACCTACCTCTTCCTCCCCCTCCTTGTAGTCGTCCCAATCAAAAGGTATTGCTTGAGATGTAACAAAAACTTCTATAGATAACAAATCAGGTGACCAAACGTCAATGGAGTGACAGGCTTTCAGTGCTGCTGCTAGTATATGTGTCGTAACTAATGTTGGTTTATTATTGTTCTCCAGTATAAACACAGTATACTACATGGCTCCCTATGCAACTATGATACTGGCTCTGCCGTCTTTACTCTTTGAAGGAGCTGGGGTTGTAGAATGGTTATACACTTTCCCTTCAGTCGTTCCATCCATGCTTCTTATTTTTCTCTCCGGAGTGCTAGCTTTCTGCCTTAACTTCTCTATCTTCTATGTTATCCACTCCACGACTGCTGT</genome_strand>
        <mrna_strand>GCCCTACAGGCGTGCCTATAGTTAGAGAAAAATGGAGGAAACTGTATTGTGCCAATGGACTGTTATTAGATCCATTTTTGCTATTCTTCAATGGTGGGGTTTCAATGTTGCTGTTATTATCATGAACAAATGGATCTTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGAGTTTAAATTTCCTTTGACAGTATCTTGCGTGCACTTCATATGCTCAGCTATTGGTGCATACCTGGTAATTAAAGTGCTGAAACTTAAACCACTCATCGTGGTCGAACCCACAGATCAGTGGAGAAGAATTTTTCCGATGTCATTTGTGTTTTGTATCAACATAGTCTTGGGGAATGTAAGTTTGCGATATATTCCTGTCTCTTTTATGCAGACCATAAAGTCATTTACTCCTGCAACAACAG................................................................................TGATTTTGCAGTGGCTAGTTTGGAGGAAGAGCTTTGAATGGAGGATCTGGACTTCCTTGATTCCCATTGTTGGAGGAATTCTTCTTACTTCTATTACTGAGCTCAGTTTCAACACTTTTGGATTTTGCGCTGCTTTGTTTGGTTGCCTTGCTACTTCGACAAAAACTATTCTAGCAGAGTCGTTGTTGCATGGTTACAAATTTGACAG.......................................................................................................................................................................................TATAAACACAGTATACTACATGGCTCCCTATGCAACTATGATACTGGCTCTGCCGTCTTTACTCTTTAGAGGAGCTGGGGTTGTAGAATGGTTATACACTTTCCCCTCAGTCGTTCTATCCATGCTTCTTANTTTTCTCTCCGGAGTGCTAGCTTTCTGCC-TAACTTCTCTATCTTCTATGTTAT-CACTCCACGACTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360142" ref_strand="+" ref_description="SGN-E360142 [cLPP-14-D18]">
      <seq>aatggcggacactgtattgtgccaatggactgctattatatccatttttgctattcttcaatggtggggtttcaatgttgctgttattatcatgaacaaatggatctttcataaattggagtttaaatttcctttgacagtatcttgcgtgcacttcatatgctcagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="38143" stop="36416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37843" g_stop="37732" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37731" i_stop="36774" i_length="958">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.542" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36773" g_stop="36716" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="170" r_length="58" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E360142" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>170</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37843" e_stop="37732"/>
          <exon e_start="36773" e_stop="36716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAGGAGAATGTATTGTGCCAATGGAGTGTTGTTAGATCCATTTTTGCTATTCTTCAATGGTGGGGTTTCAATGTTGCTGTTATTATCATGAACAAATGGATCTTTCAGGTATCCTTTTTTTAACAACATTATGATTTTAATTTGCGATCTCAAATTGTGCTTCATTACATGTTTTGTATCTTTAGTTTTTGTATTGTTCGTTTGTTACCTTTTCTTTTATGTCGTCATAACTAATAAAATGTTGCCACATTAAAGTAGAAATTTGTTAGAAGATTTGATTTTGCCACCTGGGTTCTTCTATGTTATGGCCAGAGGCGGAACCAAGATTATGAGTTTTGGGGTTTCAAATCAATTTCACATGATAATATACATATTGTTATTTAATTTTCTAATAGGGAAAATGAACAACTATCCCGTAGGCTGTGACAGAAATTCCAGAGATACAACTTAACTAAACTAAGATACTATTATCCTGAAATTATTTTTTATAAAAAAATTTGTGCACATTTTGTCTTACGTGGCACATTCCGTGACTCCACGCAATTGAGCCGCGTGAAAGATATTTGGATACTACATAAACCAAAAAGGTGCACAAAATTACCAAAAAAATAAGTTTGGGGGTAATAGGAGCTTAGTTTAGTTAATGTATGTCTCTGAGATTTCGGTTATAGTCTACGGGATACTTGTGTATTTTCCCTTTCCAATATTATAGGGTCTACAAATAAGCTAGTGGGTTCGTTCGAACCCATGAACCCCCACCTAGTTGCGCCTCTGAGAAGGTCCAATGCTTCATTGGCGACTCTTGGCTCTTAGAGGGTCCCACACGTACCCGTTCACGTTTCTGAAGAGTCCGAGCAACATTAGCTTGAACCTTCACTCTCTTCAGGCTTCCTCTATGAGTTAAATCACGACGCCTCTAAAATGATAACGGACCTCAATTTGTACACCAGTGTCACTGTTCTTCCACCATTACCTTTCTACAAATTCCGACCCCAGTTTTAGGAGATGTGTAATGCTTTCGTGCAGTATCGTTGCTTATGATTGTGTACTCTACTCATCTTTGCAGAAATTGGTGTTTAAATTTCCTTTGACAGTATCTTGCGTGCACTTCATATGCTCAGCTA</genome_strand>
        <mrna_strand>AATGGCGGACACTGTATTGTGCCAATGGACTGCTATTATATCCATTTTTGCTATTCTTCAATGGTGGGGTTTCAATGTTGCTGTTATTATCATGAACAAATGGATCTTTCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGAGTTTAAATTTCCTTTGACAGTATCTTGCGTGCACTTCATATGCTCAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311517" ref_strand="+" ref_description="SGN-E311517 [cTOA-6-E7]">
      <seq>ctcatcactgtcactccgtacccctcccccaccattttcaagaaaacccctttactctttcaaaccccaaatctcccattttgctctctccacttgcagagacaagaattcattttttttgtgtgtttctgcaacttcttgctgtagaaccaagaattgagcttaaagggcaaaagggtatctgagaaaaatgctacctttcttgttcctcttgttgagctttagtttcatcgatcccacaacttcaaaatctactattgagccatgttccaactctgatacttgttcttcccttcttggctactctctttatactgaccttaaggtttctgaagtggcttcactctttcaaacagacccaatatctcttcttactactaatgctattgatatctcatatccagatgttgaaaaccacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="42368" stop="43390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42668" g_stop="43090" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E311517" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42668" e_stop="43090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCACTGTCACTCCGTACCCCTCCCCCACCATTTTCAAGAAAACCCCTTTACTCTTTCAAACCCCAAATCTCCCATTTTGCTCTCTCCACTTGCAGAGACAAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATAC</genome_strand>
        <mrna_strand>CTCATCACTGTCACTCCGTACCCCTCCCCCACCATTTTCAAGAAAACCCCTTTACTCTTTCAAACCCCAAATCTCCCATTTTGCTCTCTCCACTTGCAGAGACAAGAATTCA-TTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318256" ref_strand="+" ref_description="SGN-E318256 [cTOA-29-G6]">
      <seq>ccaaatctcccattttgctctctccacttgcagagacaagaattcatttttttttgtgtgtttctgcaacttcttgctgtagaaccaagaattgagcttaaagggcaaaagggtatctgagaaaaatgctacctttcttgttcctcttgttgagctttagtttcatcgatcccacaacttcaaaatctactattgagccatgttccaactctgatacttgttcttcccttcttggctactctctttatactgaccttaaggtttctgaagtggcttcactctttcaaacagacccaatatctcttcttactactaatgctattgatatctcatatccagatgttgaaaaccacatacttccagctaaactgttccttaaggttcctgttacttgttcttgtgttgatgggatctttaagtctgcttttgttcattacaagactaggccttctgatactctgtctttgattgctgacataatatatgggggtcttgtttctgctgaccagatcaaggaaggaaaccccaatgctgttggtcctgacccttcagtgttaaatgttgggactaatctttggattcctcttccttgcacttgctttaatgggactgacaataatcttcctgctatttatatgtcatatgntgttagagctgttgatactcttgcagggattgctgctangtactctaccactcttactgaccttatgaatgttaatggctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="42434" stop="43762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42734" g_stop="43462" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E318256" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42734" e_stop="43462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCTCCCATTTTGCTCTCTCCACTTGCAGAGACAAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAAT-GCTTTGG</genome_strand>
        <mrna_strand>CCAAATCTCCCATTTTGCTCTCTCCACTTGCAGAGACAAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGNTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTANGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGGCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710777" ref_strand="+" ref_description="SGN-E710777 [FA56CG09]">
      <seq>cccttttgctctctccacttgcagagacaagaattcatttttttttgtgtgtttctgcaacttcttgctgtagaaccaagaattgagcttaaagggcaaaagggtatctgagaaaaatgctacctttcttgttcctcttgttgagctttagtttcatcgatcccacaacttcaaaatctactattgagccatgttccaactctgatacttgttcttcccttcttggctactctctttatactgaccttaaggtttctgaagtggcttcactctttcaaacagacccaatatctcttcttactactaatgctattgatatctcatatccagatgttgaaaaccacatacttccagctaaactgttccttaaggttcctgttacttgttcttgtgttgatgggatctttaagtctgcttttgttcattacaagactaggccttctgatactctgtctttgattgctgacataatatatgggggtcttgtttctgctgaccagatcaaggaaggaaaccccaatgctgttggtcctgacccttcagtgttaaatgttgggactaatctttggattcctcttccttgcacttgctttaatgggactgacaataatcttcctgctatttatatgtcatatgttgttagagctgttgatactcttgcagggattgctgctaggtactctaccactcttactgaccttatgaatgttaatgctttgggaggtccttctattaaggagggtgacattctttccattcctttgtctgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="42443" stop="43812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42743" g_stop="43510" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E710777" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42743" e_stop="43510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTGCTCTCTCCACTTGCAGAGACAAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGCTTTGGGAGGTCCTTCTATTAAGGAGGGTGACATTCTTTCCATTCCTTTGTCTG</genome_strand>
        <mrna_strand>CCCTTTTGCTCTCTCCACTTGCAGAGACAAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGCTTTGGGAGGTCCTTCTATTAAGGAGGGTGACATTCTTTCCATTCCTTTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253841" ref_strand="+" ref_description="SGN-E253841 [cLEG-28-L11]">
      <seq>aagaattcatttttttttgtgtgtttctgcaacttcttgctgtagaaccaagaattgagcttaaagggcaaaagggtatctgagaaaaatgctacctttcttgttcctcttgttgagctttagtttcatcgatcccacaacttcaaaatctactattgagccatgttccaactctgatacttgttcttcccttcttggctactctctttatactgaccttaaggtttctgaagtggcttcactctttcaaacagacccaatatctcttcttactactaatgctattgatatctcatatccagatgttgaaaaccacatacttccagctaaactgttccttaaggttcctgttacttgttcttgtgttgatgggatctttaagtctgcttttgttcattacaagactaggccttctgatactctgtctttgattgctgacataatatatgggggtcttgtttctgctgaccagatcaaggaaggaaaccccaatgctgttggtcctgacccttcagtgttaaatgttgggactaatctttggattcctcttccttgcacttgctttaatgggactgacaataatcttcctgctatttatatgtcatatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="42471" stop="43680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42771" g_stop="43380" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E253841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42771" e_stop="43380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTT</genome_strand>
        <mrna_strand>AAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710120" ref_strand="+" ref_description="SGN-E710120 [FA54BB10]">
      <seq>gagaaaaatcgctacctttcttgttcctcttgttgagctttagtttcatcgatcccacaacttcaaaatctactattgagccatgttccaactctgatacttgttcttcccttcttggctactctctttatactgaccttaaggtttctgaagtggcttcactctttcaaacagacccaatatctcttcttactactaatgctattgatatctcatatccagatgttgaaaaccacatacttccagctaaactgttccttaaggttcctgttacttgttcttgtgttgatgggatctttaagtctgcttttgttcattacaagactaggccttctgatactctgtctttgattgctgacataatatatgggggtcttgtttctgctgaccagatcaaggaaggaaaccccaatgctgttggtcctgacccttcagtgttaaatgttgggactaatctttggattcctcttccttgcacttgctttaatgggactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="42552" stop="43646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42852" g_stop="43346" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E710120" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42852" e_stop="43346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAAAT-GCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGA</genome_strand>
        <mrna_strand>GAGAAAAATCGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604168" ref_strand="+" ref_description="SGN-E604168 [67360]">
      <seq>ctttaagtctgcctttgttcattacaagactaggccttctgatactctgtctatgatttctgacacaatatatggtggtcttgtttctgctgaccagatcaaggaaggaaactccaatgctgttggtcctgacccttcagtgttaaatgttgggactaatctttggattcctcttccttgtacttgctttaatgggactgacaataatcttcctgctatttatatgtcatatgttgttagagctgtagatactcttgcagggattgctgctaggtactctaccactcttactgaccttatgaatgttaatgctttgggaggtccttctattaaggagggtgacattctttccattcctctgtctgcttgtacatctagcttcccaagatctgcctcagattatggcttatctgttgcgaacgggagctattctattacagctagccactgtgtgcaatgcagttgtggaccagggggtcggaatttgtactgcatgccagcttcattagcagtttcttgctcaagcatgcagtgcaagaacagcaatctcatgcttggaaatgttaccatacaacagactggtggtggttgcaatgtgacttcttgcaattacggtggccttgttaatggaaccatcatttgtacattatccacgtcgtttcaatctcgatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="42846" stop="45557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43146" g_stop="43510" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43511" i_stop="44892" i_length="1382">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44893" g_stop="45010" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="483" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45011" i_stop="45101" i_length="91">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45102" g_stop="45263" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="645" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45264" i_stop="45365" i_length="102">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45366" g_stop="45395" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="675" r_length="30" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E604168" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43146" e_stop="43510"/>
          <exon e_start="44893" e_stop="45010"/>
          <exon e_start="45102" e_stop="45263"/>
          <exon e_start="45366" e_stop="45395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGCTTTGGGAGGTCCTTCTATTAAGGAGGGTGACATTCTTTCCATTCCTTTGTCTGGTGAGCAAAATGCAACCCACTTTTTTTCTTTGTTTTTATGGCTTCTTTATTGTGTTTTGCGTGTGATTATGGTATGCAGGTGTCAAAGTGTTTGATTTTCCATCTGTATTACTCCCTCCCCTCCATTTCAATTTATTCTCTTGTTTCCTAAACATGTCCAAGTTAGACGTTAGAATTAAAGAACGACCAAAAAAGGAAAAAAAAAACATTTTTCAAAACAGAATGAAAAGGTAACTAAGGCAAACTTAATGGAATGGAGGGAGTATTCAACTCTAGCCTTATAAATATTGTATGTGTAGAGTTGTGTATGCAAACATTATCGCTATCTTGTATACCATATGTGTGTCTGTGCTTGATGGGTAGAACACATATCATAAAGTATGTGTATCTACATTTAATGTAGCTTCTTGGTACTCAGCTTTGAGGGGCCAAGTTGTCTAAGGAGGCATGCTTGCCATGCTATGGGTGAATATGTTCATTCTAGGTTTGCGGGTGTTATACATATGAAAGTAGGTTCCATGTAACATTGTAATGCATGTATAGTATGTAATTTGAACTAATGAAGATTTCATGTCCAGCATAAGAACCCTTCTTTGTGTCTACCGTTTTCCTCTTCTGTAATCTAATAAAGCAAGCAGTAGTGAGCAAGCTAGGATTATTTAGACAATGTTTATTACTGAAGTTACTTTTAATAGTTGATGTTATGCTTAGGTTCATGAAGCAAATGTTGAGTATAAGTTTGATATGTTTTTGAGTGATTTTTTATTTCCTCTTGAATGAAAATGCATCTCTTTGATATTCTTGATGAGAATTGCTTACGATGACCCAGTATGATTATACTTCGTAACTGTATGCATCAGATTATGAAGTCAAAAGCTGAGTCACTTATAACGATTTTTTTCTTTTTCTTGTCACTAGATGTATGTGTCTGTGAAATGCTTGAAGTTATTGAAAAGAGATGTTACTGTAGCATATCAAGAATTTTTTAACACTTGTAAGGTCACTAAGAGAACAGAACACGAATCCTTATTCGTAGATTGAATATTGCATTTCTCAGTTCAGTAATAACATCGTTTCTGGCTAAATCAGAAACAGATACTCGCTCCATTTCTTGTATTTTGGAAGTATTTCTTTGTCTAAGTTTTCATTGTTTCATGTTCTTTATTCTTCTTGCGGTTGTAATTCATCTAGTAGAAACTGCTTTATTGGAGATTTCATAAAAATGGCTCTGTCGTAGTATTTCGTTGTTGGATATCGAGTGTTTATAAACAAAGGTACAACTTTAATTATATTTAACTTAGCACAAGCATTGCAGTAAAGCTACTTAATTTCATTGATGATAGATGTTTGGTAATGATAGATGCTTTTTCTTCTCACTGCAGCTTGTACGTCTAGCTTCCCAAGATCTGCCTCGGATTATGGCTTATCTGTTGCGAATGGGAGCTATTCTATTACAGCTAGCCACTGTGTGCAATGCAGTTGTGGACCAGGGGGTCGGAAGTAAGTCAGCAGATTATATGCTTTCAATTTCATTTGCAGTTATCCTGGTCTGTCGAAAGTTCTGATCGTGATATTGCTGGTTGTTTTGCAGTTTGTACTGCATGCCAGCTTCTTTAGCAGTTTCTTGCTCAAGCATGCAGTGCAAGAACAGCAATCTCATGCTCGGAAATGTTACCATACAACAGACTGGTGGTGGTTGCAATGTGACTTCTTGCAATTACGGTGGCCTTGTTAATGGAACCATCATCACTACGTGAGCATTATTGTTCAATTTTCTGCCCTCAGTGTATTGTATGTAGTCTCTGATTTCTGTTTGCTTATTTGACGCTTTGTATGTCCCTTGTGCTGGATGCAGATTATCCACATCGCTTCAACCTCGATGCCC</genome_strand>
        <mrna_strand>CTTTAAGTCTGCCTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTATGATTTCTGACACAATATATGGTGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACTCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGTACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTAGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGCTTTGGGAGGTCCTTCTATTAAGGAGGGTGACATTCTTTCCATTCCTCTGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTACATCTAGCTTCCCAAGATCTGCCTCAGATTATGGCTTATCTGTTGCGAACGGGAGCTATTCTATTACAGCTAGCCACTGTGTGCAATGCAGTTGTGGACCAGGGGGTCGGAA...........................................................................................TTTGTACTGCATGCCAGCTTCATTAGCAGTTTCTTGCTCAAGCATGCAGTGCAAGAACAGCAATCTCATGCTTGGAAATGTTACCATACAACAGACTGGTGGTGGTTGCAATGTGACTTCTTGCAATTACGGTGGCCTTGTTAATGGAACCATCATTTGTAC......................................................................................................ATTATCCACGTCGTTTCAATCTCGATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246427" ref_strand="+" ref_description="SGN-E246427 [cLEF-52-I6]">
      <seq>aagactaggccttctgatactctgtctttgattgctgacataatatatgggggtcttgtttctgctgaccagatcaaggaaggaaaccccaatgctgttggtcctgacccttcagtgttaaatgttgggactaatctttggattcctcttccttgcacttgctttaatgggactgacaataatcttcctgctatttatatgtcatatgttgttagagctgttgatactcttgcagggattgctgctaggtactctaccactcttactgaccttatgaatgttaatgctttgggaggtccttctattaaggagggtgacattctttccattcctttgtctgcttgtacgtctagcttcccaagatctgcctcggattatggcttatctgttgcgaatgggagctattctattacagctagccactgtgtgcaatgcagttgtggaccagggggtcggaatttgtactgcatgccagcttctttagcagtttcttgctcaagcatgcagtgcaagaacagcaatctcatgctcggaaatgttaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="42871" stop="45489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43171" g_stop="43510" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43511" i_stop="44892" i_length="1382">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44893" g_stop="45010" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="458" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45011" i_stop="45101" i_length="91">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45102" g_stop="45189" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="546" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E246427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43171" e_stop="43510"/>
          <exon e_start="44893" e_stop="45010"/>
          <exon e_start="45102" e_stop="45189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGCTTTGGGAGGTCCTTCTATTAAGGAGGGTGACATTCTTTCCATTCCTTTGTCTGGTGAGCAAAATGCAACCCACTTTTTTTCTTTGTTTTTATGGCTTCTTTATTGTGTTTTGCGTGTGATTATGGTATGCAGGTGTCAAAGTGTTTGATTTTCCATCTGTATTACTCCCTCCCCTCCATTTCAATTTATTCTCTTGTTTCCTAAACATGTCCAAGTTAGACGTTAGAATTAAAGAACGACCAAAAAAGGAAAAAAAAAACATTTTTCAAAACAGAATGAAAAGGTAACTAAGGCAAACTTAATGGAATGGAGGGAGTATTCAACTCTAGCCTTATAAATATTGTATGTGTAGAGTTGTGTATGCAAACATTATCGCTATCTTGTATACCATATGTGTGTCTGTGCTTGATGGGTAGAACACATATCATAAAGTATGTGTATCTACATTTAATGTAGCTTCTTGGTACTCAGCTTTGAGGGGCCAAGTTGTCTAAGGAGGCATGCTTGCCATGCTATGGGTGAATATGTTCATTCTAGGTTTGCGGGTGTTATACATATGAAAGTAGGTTCCATGTAACATTGTAATGCATGTATAGTATGTAATTTGAACTAATGAAGATTTCATGTCCAGCATAAGAACCCTTCTTTGTGTCTACCGTTTTCCTCTTCTGTAATCTAATAAAGCAAGCAGTAGTGAGCAAGCTAGGATTATTTAGACAATGTTTATTACTGAAGTTACTTTTAATAGTTGATGTTATGCTTAGGTTCATGAAGCAAATGTTGAGTATAAGTTTGATATGTTTTTGAGTGATTTTTTATTTCCTCTTGAATGAAAATGCATCTCTTTGATATTCTTGATGAGAATTGCTTACGATGACCCAGTATGATTATACTTCGTAACTGTATGCATCAGATTATGAAGTCAAAAGCTGAGTCACTTATAACGATTTTTTTCTTTTTCTTGTCACTAGATGTATGTGTCTGTGAAATGCTTGAAGTTATTGAAAAGAGATGTTACTGTAGCATATCAAGAATTTTTTAACACTTGTAAGGTCACTAAGAGAACAGAACACGAATCCTTATTCGTAGATTGAATATTGCATTTCTCAGTTCAGTAATAACATCGTTTCTGGCTAAATCAGAAACAGATACTCGCTCCATTTCTTGTATTTTGGAAGTATTTCTTTGTCTAAGTTTTCATTGTTTCATGTTCTTTATTCTTCTTGCGGTTGTAATTCATCTAGTAGAAACTGCTTTATTGGAGATTTCATAAAAATGGCTCTGTCGTAGTATTTCGTTGTTGGATATCGAGTGTTTATAAACAAAGGTACAACTTTAATTATATTTAACTTAGCACAAGCATTGCAGTAAAGCTACTTAATTTCATTGATGATAGATGTTTGGTAATGATAGATGCTTTTTCTTCTCACTGCAGCTTGTACGTCTAGCTTCCCAAGATCTGCCTCGGATTATGGCTTATCTGTTGCGAATGGGAGCTATTCTATTACAGCTAGCCACTGTGTGCAATGCAGTTGTGGACCAGGGGGTCGGAAGTAAGTCAGCAGATTATATGCTTTCAATTTCATTTGCAGTTATCCTGGTCTGTCGAAAGTTCTGATCGTGATATTGCTGGTTGTTTTGCAGTTTGTACTGCATGCCAGCTTCTTTAGCAGTTTCTTGCTCAAGCATGCAGTGCAAGAACAGCAATCTCATGCTCGGAAATGTTACCATA</genome_strand>
        <mrna_strand>AAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGCTTTGGGAGGTCCTTCTATTAAGGAGGGTGACATTCTTTCCATTCCTTTGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTACGTCTAGCTTCCCAAGATCTGCCTCGGATTATGGCTTATCTGTTGCGAATGGGAGCTATTCTATTACAGCTAGCCACTGTGTGCAATGCAGTTGTGGACCAGGGGGTCGGAA...........................................................................................TTTGTACTGCATGCCAGCTTCTTTAGCAGTTTCTTGCTCAAGCATGCAGTGCAAGAACAGCAATCTCATGCTCGGAAATGTTACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438804" ref_strand="+" ref_description="SGN-E438804 [cSTA-9-P13]">
      <seq>ctgacaataatcttcccgctatttatatgtcatatgttgttagagctgttgatactcttgcagggattgctgctaggtactctaccactcttactgaccttatgaatgttaatgctttgggaggtccttctattaaggagggtgacattctttccattcctctgtctgcttgtacatctagcttcccaagatctgcctcagattatggcttatctgttgcaaatgggagctattctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="43043" stop="45264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43343" g_stop="43510" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43511" i_stop="44892" i_length="1382">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44893" g_stop="44964" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="240" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E438804" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43343" e_stop="43510"/>
          <exon e_start="44893" e_stop="44964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGCTTTGGGAGGTCCTTCTATTAAGGAGGGTGACATTCTTTCCATTCCTTTGTCTGGTGAGCAAAATGCAACCCACTTTTTTTCTTTGTTTTTATGGCTTCTTTATTGTGTTTTGCGTGTGATTATGGTATGCAGGTGTCAAAGTGTTTGATTTTCCATCTGTATTACTCCCTCCCCTCCATTTCAATTTATTCTCTTGTTTCCTAAACATGTCCAAGTTAGACGTTAGAATTAAAGAACGACCAAAAAAGGAAAAAAAAAACATTTTTCAAAACAGAATGAAAAGGTAACTAAGGCAAACTTAATGGAATGGAGGGAGTATTCAACTCTAGCCTTATAAATATTGTATGTGTAGAGTTGTGTATGCAAACATTATCGCTATCTTGTATACCATATGTGTGTCTGTGCTTGATGGGTAGAACACATATCATAAAGTATGTGTATCTACATTTAATGTAGCTTCTTGGTACTCAGCTTTGAGGGGCCAAGTTGTCTAAGGAGGCATGCTTGCCATGCTATGGGTGAATATGTTCATTCTAGGTTTGCGGGTGTTATACATATGAAAGTAGGTTCCATGTAACATTGTAATGCATGTATAGTATGTAATTTGAACTAATGAAGATTTCATGTCCAGCATAAGAACCCTTCTTTGTGTCTACCGTTTTCCTCTTCTGTAATCTAATAAAGCAAGCAGTAGTGAGCAAGCTAGGATTATTTAGACAATGTTTATTACTGAAGTTACTTTTAATAGTTGATGTTATGCTTAGGTTCATGAAGCAAATGTTGAGTATAAGTTTGATATGTTTTTGAGTGATTTTTTATTTCCTCTTGAATGAAAATGCATCTCTTTGATATTCTTGATGAGAATTGCTTACGATGACCCAGTATGATTATACTTCGTAACTGTATGCATCAGATTATGAAGTCAAAAGCTGAGTCACTTATAACGATTTTTTTCTTTTTCTTGTCACTAGATGTATGTGTCTGTGAAATGCTTGAAGTTATTGAAAAGAGATGTTACTGTAGCATATCAAGAATTTTTTAACACTTGTAAGGTCACTAAGAGAACAGAACACGAATCCTTATTCGTAGATTGAATATTGCATTTCTCAGTTCAGTAATAACATCGTTTCTGGCTAAATCAGAAACAGATACTCGCTCCATTTCTTGTATTTTGGAAGTATTTCTTTGTCTAAGTTTTCATTGTTTCATGTTCTTTATTCTTCTTGCGGTTGTAATTCATCTAGTAGAAACTGCTTTATTGGAGATTTCATAAAAATGGCTCTGTCGTAGTATTTCGTTGTTGGATATCGAGTGTTTATAAACAAAGGTACAACTTTAATTATATTTAACTTAGCACAAGCATTGCAGTAAAGCTACTTAATTTCATTGATGATAGATGTTTGGTAATGATAGATGCTTTTTCTTCTCACTGCAGCTTGTACGTCTAGCTTCCCAAGATCTGCCTCGGATTATGGCTTATCTGTTGCGAATGGGAGCTATTCTATTA</genome_strand>
        <mrna_strand>CTGACAATAATCTTCCCGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGCTTTGGGAGGTCCTTCTATTAAGGAGGGTGACATTCTTTCCATTCCTCTGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTACATCTAGCTTCCCAAGATCTGCCTCAGATTATGGCTTATCTGTTGCAAATGGGAGCTATTCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719260" ref_strand="+" ref_description="SGN-E719260 [FC07BA10]">
      <seq>atttcaaaaatctcccctaaaaacagcatatattaaaaaaagattatatttttatgagaaatttgaatgaatagaggcttcttgcttgtggtttttggatataattgagtagttagtacttgttctctgacaattcacagcacagatctttgactgtctgaatttgtttattgcttcatcaatctgaaatcttgaaaccccaattcatctgttatggcttctttacagtaatatggacattgtactatgagcatttaggagattaaatgcttattgagatggaaaagaggaaatggttgtggaaaaggagaccttccgataagagccctggtgaaacggaaagttctggttctttatcttcatattcggagagatactccgatgagcaggatgcactaaaagaatttcctgaccatgacaaacagtcaccagaggttacctcaaaagctgcattcgttgatgatgaatccaaggaaagcttgagatgcttgacagagaaattatcagctgctcttgttaatgttagcgccaaagaaaacttatttaagcagcatgctaaagttgccgaagaagctatcgcaggttgggaaaaggcagaaaatgaagttgcagttctaaagcagcaactagatgcggctgtgcagcaaaacttgactttggaagttcgtgtcagtcatctcgacggtgcactcaaggaatgtgtcaggcagttgagacaagcaagagatgagcaagagaaaatgattcaagacgctatggcagaaaaaaatgaaatggaatctgaaaaaactgcacttgagaaacagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="47227" stop="51189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47527" g_stop="47758" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47759" i_stop="48348" i_length="590">
            <donor d_prob="0.056" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48349" g_stop="48505" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="389" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48506" i_stop="50080" i_length="1575">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50081" g_stop="50273" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="582" r_length="193" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50274" i_stop="50660" i_length="387">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50661" g_stop="50889" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="811" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E719260" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47527" e_stop="47758"/>
          <exon e_start="48349" e_stop="48505"/>
          <exon e_start="50081" e_stop="50273"/>
          <exon e_start="50661" e_stop="50889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAAAATCTCCCCAAAAAACAGCATATATTAAAAAAAGATTATATTTTTATGAGAAATTTGAATGAATAGAGGCTTCTTGCTTGTGGTTTTTGGATATAATTGAGTAGTTAGTACTTGTTCTCTGACAATTCACAGCACAGATCTTTGACTGTCTGAATTTGTTTATTGCTTCATCAATCTGAAATCTTGAAACCCCAATTCATCTGTTATGGCTTCTTTACAGTAATGTATGTTGATTTCTTGTTTTCTCTTTGCATTTTGGGTTGAAACAGTAGAGTCATATAATCTATTCATATTTAATCTTGGAGACAATAAACTGAAAATGGGCCAGCAATGGATCTGTTAAAAAATATTCCTTTGTCCATTTTTGGCTTGGTGTTTTGAGGTAAGGTCATTTTCTATTGCAAAGGAAATGTCACTTTGGTTTGCCACTAGAACTTTTGGGTAGAGGGTATCATTGAGATTGTGATTTTTGATGGGTTTGCTTTAGATGGGGGCTTCTTGTTTTTTTTATCAAAGAGTAATGGTAAAGTTTGGTTTTTGTTCTATCTATTGTTCAAAATGCTTATTTTTTGAGCTTAGATGGATAGTTGAGTGGATTTGAAGGAAAACTGAATGAACTTGAAGCCAAGTTATAGTTGTTGTTAAATGACAGTGTGTTTGGACAGCTGGTTGTATTCTGTAGGGTATAGGTATATTAGTTGTTTCTTTGCATTTGGGATGGAGCTTAATCATATCAGAGGTTATCTGTGTCATTTTTCTGTTGGACTAATGTCTCTTTGTGTTGTTATTGATTGAGGGTATCAATTATATGCAGATGGACATTGTACTATGAGCATTTAGGAGATTAAATGCTTATTGAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAGAGTTCTGGTTCTTTATCTTCATATTCGGAGAGATACTCCGATGAGCAGGTAAAAGGCTTAAAGAGAAAGAGTTTTTCTTTTTTTGGTCTTTCAGTTAATTGTGCTGATATGGAATAATCTTATATCACATGGTTGGAAAAGATAAGCTGCTGTTTTTTAGAAACCTCACATTTAATCTTCACTTGCACCCCGGGTTTTAAATTGATAATGGTTGAGGTAAATATGCAGCTCAAATACTGACAGCTGAAAGTTTTTCGTGTCCGAGTACTGTATTTTCTTTCTACTTGCATATATATATATATATATGTACCAGTTTTGATTTTTGAAATATTTGGAAGGTCATTGGTCTTTATTGATCATCATCAGGTTTTCGCTATTGGTTTAGTTATAGAAATGACTAGCTTATAGTTATTGTAGACAAATAATCACAATAGATAGCCCCCCATATTGCTGAACCACCAGACTGCCCGTCATCATCTAGAGAACGTCCCTTCTCCGTGGTTTATCCAATTTCTACATTTAAATTGAGCCATAATTCTTCTCCCCTGTACTTCTTAACATTTATCTATTGTAAATGTTTACCTAAATGTTGGATTAGTATATAAATATTGTTATTTTATTGTCGTTTTTTCCTTTCAATCCTGCTTTGGTTACATTTTTTTGAGCTGAGGATCTATTAGAAATAACCTCTCTACCCCCACAAAGGTAGTGGTAAGGTCTGCATACATCCTACCCTACTTGTGGGGCTACACTTGTTCTCATTGAATTAGTATAAAGTTCCAGTTTTTAAGGTGCTTGGGAAGAATTATGTTTCATGACTTTATTAAAGAACACTAAGTTCCTCATAGAAGGGATTTATGATATCTATAAAACTAAATTGGTATAATACTAATTTGTTGTTTAATGATTCTGAGGTGATCTTTTTAAGAGTTTAAGGTTTTATTAAATGAAAAGTCTGCAGTCCAAGTTTGTAGCTAATTCACAAATCTCAGATCTATATGAGGCGAAAAGCAACATAAAAGAGATTGTTGTGATAGAATTTTGAGTATGTCAAACAGTTTATTTATCTGCAGAGCATCTCCTGAAATAGCAAATGTAAATTGCAGAGGCCGATTGAATAACAATTTATATGTGCAGCTAAAAACAGTAGTGGCTGAAGATTGACCTCTAGTTTGGTGCCTTGATATGCTTTCCAGTATAAAGATCTGTGCTCAGGTTAGATGGTAGCAGATGATGCAAGATCTTGGTTTGGAAAGAAAGTGCCAAAAGCTTTCATAAGTGATGTTTCTTACCGTAGTCAGCAGTTTCGTCCTGATAAGGAATATACTTTCACCCTTGACCCTTTTTTTTTGGTTGAGATTAGATGCTCTCAGTAAGTGTAAAGATGTTCCTATAGCTTTGTTAAAAGAAATATTGTCCTTATCACTGCACCATCCATTCCTTCTTTGTAGGGTCATTTGTCTCATATTGAAAATCATTCAATAGAAATCTTACTGACTAGCTGCCAGAGAACCATCTCTGTGCAATCTAGAACATTTTCTTGTCAAGAAAAGCTTTAACATTTTTAGCTATTGTATTACTTCTTTTACGAGAAAGGATCACCTGTTCTTTTCATTGAAGCAGGATGCACTAAAAGAATTTCCTGACCATGACAAACAGTCACCAGAGGTTACCTCAAAAGCTGCATTCGTTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAGAAGCTATCGCAGGTATCTTCTTCAACTCCTTTCTTCCTCTGTTGTGATTCCAATCTAATTAAGGCATTTGGACATTAAAATGTGATATTTGAAAAATAGAAGTTGTAAAAAGGGTATTTGGAAGTTGTAGTTGTGTGTTGGACATTCATTTAACTTGAAATAAATAGAAGCTCTGTGACCGGAAAAAAAGTTCACTTGAACTGTATTTCATTGGAAAAAAAGGAAAAAATAAATGGGAGCTAAGATTTGTCTCTTGGCTGTCTCTTCATGCACACCCCTTTTTCTGGTATGTGTTTCACACGCTGAAACAATTTTGTGGAATATGCCTCTTCCATCACCTTCCAAAGAAAGTGATTTTTGGTCTGATAATTTCTTGTATACTTTTTATCATCTTGGTAGGTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAGCAACTAGATGCGGCTGTGCAGCAAAACTTGACTTTGGAAGTTCGTGTCAGTCATCTCGACGGTGCACTCAAGGAATGTGTCAGGCAGTTGAGACAAGCAAGAGATGAGCAAGAGAAAATGATTCAAGACGCTATGGCAGAAAAAAATGAAATGGAATCTGAAAAAACTGCACTTGAGAAACAGCTACT</genome_strand>
        <mrna_strand>ATTTCAAAAATCTCCCCTAAAAACAGCATATATTAAAAAAAGATTATATTTTTATGAGAAATTTGAATGAATAGAGGCTTCTTGCTTGTGGTTTTTGGATATAATTGAGTAGTTAGTACTTGTTCTCTGACAATTCACAGCACAGATCTTTGACTGTCTGAATTTGTTTATTGCTTCATCAATCTGAAATCTTGAAACCCCAATTCATCTGTTATGGCTTCTTTACAGTAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACATTGTACTATGAGCATTTAGGAGATTAAATGCTTATTGAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAAAGTTCTGGTTCTTTATCTTCATATTCGGAGAGATACTCCGATGAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCACTAAAAGAATTTCCTGACCATGACAAACAGTCACCAGAGGTTACCTCAAAAGCTGCATTCGTTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAAACTTATTTAAGCAGCATGCTAAAGTTGCCGAAGAAGCTATCGCAG...................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAGCAACTAGATGCGGCTGTGCAGCAAAACTTGACTTTGGAAGTTCGTGTCAGTCATCTCGACGGTGCACTCAAGGAATGTGTCAGGCAGTTGAGACAAGCAAGAGATGAGCAAGAGAAAATGATTCAAGACGCTATGGCAGAAAAAAATGAAATGGAATCTGAAAAAACTGCACTTGAGAAACAGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737106" ref_strand="+" ref_description="SGN-E737106 [LC08CA09]">
      <seq>gcttgtggtttttggatataattgagtagttagtacttgttctctgacaattcacagcacagatctttgactgtctgaatttgtttattgcttcatcaatctgaaatcttgaaaccccaattcatctgttatggcttctttacagtaatatggacattgtactatgagcatttaggagattaaatgcttattgagatggaaaagaggaaatggttgtggaaaaggagaccttccgataagagccctggtgaaacggagagttctggttctttatcttcatattcggagagatactccgatgagcaggatgcactaaaagaatttcctgaccatgacaaacagtcaccagaggttacctcaaaagctgcattcgttgatgatgaatccaaggaaagcttgagatgcttgacagagaaattatcagctgctcttgttaatgttagcgccaaagaagacttagttaagcagcatgctaaagttgccgaagaagctatcgcaggttgggaaaaggcagaaaatgaagttgcagttctaaagcagcaactagatgcggctgtgcagcaaaacttgactttggaagttcgtgtcagtcatctcgacggtgcactcaaggaatgtgtcaggcagttgagacaagcaagagatgagcaagagaaaatgattcaagacgctatggcagaaaaaaatgaaatggaatctgaaaaaactgcacttgagaaacagctacttaagctccagacacaagtggaggctggtaaagctgaaatgcctacttctactgatcctgatatccttgtcaggcttaagtatctagagaaagagaatgcagctctcaaaattgaacttgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="47310" stop="51312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47610" g_stop="47758" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47759" i_stop="48348" i_length="590">
            <donor d_prob="0.056" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48349" g_stop="48505" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="306" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48506" i_stop="50080" i_length="1575">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50081" g_stop="50273" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="499" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50274" i_stop="50660" i_length="387">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50661" g_stop="51012" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="851" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E737106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47610" e_stop="47758"/>
          <exon e_start="48349" e_stop="48505"/>
          <exon e_start="50081" e_stop="50273"/>
          <exon e_start="50661" e_stop="51012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTGGTTTTTGGATATAATTGAGTAGTTAGTACTTGTTCTCTGACAATTCACAGCACAGATCTTTGACTGTCTGAATTTGTTTATTGCTTCATCAATCTGAAATCTTGAAACCCCAATTCATCTGTTATGGCTTCTTTACAGTAATGTATGTTGATTTCTTGTTTTCTCTTTGCATTTTGGGTTGAAACAGTAGAGTCATATAATCTATTCATATTTAATCTTGGAGACAATAAACTGAAAATGGGCCAGCAATGGATCTGTTAAAAAATATTCCTTTGTCCATTTTTGGCTTGGTGTTTTGAGGTAAGGTCATTTTCTATTGCAAAGGAAATGTCACTTTGGTTTGCCACTAGAACTTTTGGGTAGAGGGTATCATTGAGATTGTGATTTTTGATGGGTTTGCTTTAGATGGGGGCTTCTTGTTTTTTTTATCAAAGAGTAATGGTAAAGTTTGGTTTTTGTTCTATCTATTGTTCAAAATGCTTATTTTTTGAGCTTAGATGGATAGTTGAGTGGATTTGAAGGAAAACTGAATGAACTTGAAGCCAAGTTATAGTTGTTGTTAAATGACAGTGTGTTTGGACAGCTGGTTGTATTCTGTAGGGTATAGGTATATTAGTTGTTTCTTTGCATTTGGGATGGAGCTTAATCATATCAGAGGTTATCTGTGTCATTTTTCTGTTGGACTAATGTCTCTTTGTGTTGTTATTGATTGAGGGTATCAATTATATGCAGATGGACATTGTACTATGAGCATTTAGGAGATTAAATGCTTATTGAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAGAGTTCTGGTTCTTTATCTTCATATTCGGAGAGATACTCCGATGAGCAGGTAAAAGGCTTAAAGAGAAAGAGTTTTTCTTTTTTTGGTCTTTCAGTTAATTGTGCTGATATGGAATAATCTTATATCACATGGTTGGAAAAGATAAGCTGCTGTTTTTTAGAAACCTCACATTTAATCTTCACTTGCACCCCGGGTTTTAAATTGATAATGGTTGAGGTAAATATGCAGCTCAAATACTGACAGCTGAAAGTTTTTCGTGTCCGAGTACTGTATTTTCTTTCTACTTGCATATATATATATATATATGTACCAGTTTTGATTTTTGAAATATTTGGAAGGTCATTGGTCTTTATTGATCATCATCAGGTTTTCGCTATTGGTTTAGTTATAGAAATGACTAGCTTATAGTTATTGTAGACAAATAATCACAATAGATAGCCCCCCATATTGCTGAACCACCAGACTGCCCGTCATCATCTAGAGAACGTCCCTTCTCCGTGGTTTATCCAATTTCTACATTTAAATTGAGCCATAATTCTTCTCCCCTGTACTTCTTAACATTTATCTATTGTAAATGTTTACCTAAATGTTGGATTAGTATATAAATATTGTTATTTTATTGTCGTTTTTTCCTTTCAATCCTGCTTTGGTTACATTTTTTTGAGCTGAGGATCTATTAGAAATAACCTCTCTACCCCCACAAAGGTAGTGGTAAGGTCTGCATACATCCTACCCTACTTGTGGGGCTACACTTGTTCTCATTGAATTAGTATAAAGTTCCAGTTTTTAAGGTGCTTGGGAAGAATTATGTTTCATGACTTTATTAAAGAACACTAAGTTCCTCATAGAAGGGATTTATGATATCTATAAAACTAAATTGGTATAATACTAATTTGTTGTTTAATGATTCTGAGGTGATCTTTTTAAGAGTTTAAGGTTTTATTAAATGAAAAGTCTGCAGTCCAAGTTTGTAGCTAATTCACAAATCTCAGATCTATATGAGGCGAAAAGCAACATAAAAGAGATTGTTGTGATAGAATTTTGAGTATGTCAAACAGTTTATTTATCTGCAGAGCATCTCCTGAAATAGCAAATGTAAATTGCAGAGGCCGATTGAATAACAATTTATATGTGCAGCTAAAAACAGTAGTGGCTGAAGATTGACCTCTAGTTTGGTGCCTTGATATGCTTTCCAGTATAAAGATCTGTGCTCAGGTTAGATGGTAGCAGATGATGCAAGATCTTGGTTTGGAAAGAAAGTGCCAAAAGCTTTCATAAGTGATGTTTCTTACCGTAGTCAGCAGTTTCGTCCTGATAAGGAATATACTTTCACCCTTGACCCTTTTTTTTTGGTTGAGATTAGATGCTCTCAGTAAGTGTAAAGATGTTCCTATAGCTTTGTTAAAAGAAATATTGTCCTTATCACTGCACCATCCATTCCTTCTTTGTAGGGTCATTTGTCTCATATTGAAAATCATTCAATAGAAATCTTACTGACTAGCTGCCAGAGAACCATCTCTGTGCAATCTAGAACATTTTCTTGTCAAGAAAAGCTTTAACATTTTTAGCTATTGTATTACTTCTTTTACGAGAAAGGATCACCTGTTCTTTTCATTGAAGCAGGATGCACTAAAAGAATTTCCTGACCATGACAAACAGTCACCAGAGGTTACCTCAAAAGCTGCATTCGTTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAGAAGCTATCGCAGGTATCTTCTTCAACTCCTTTCTTCCTCTGTTGTGATTCCAATCTAATTAAGGCATTTGGACATTAAAATGTGATATTTGAAAAATAGAAGTTGTAAAAAGGGTATTTGGAAGTTGTAGTTGTGTGTTGGACATTCATTTAACTTGAAATAAATAGAAGCTCTGTGACCGGAAAAAAAGTTCACTTGAACTGTATTTCATTGGAAAAAAAGGAAAAAATAAATGGGAGCTAAGATTTGTCTCTTGGCTGTCTCTTCATGCACACCCCTTTTTCTGGTATGTGTTTCACACGCTGAAACAATTTTGTGGAATATGCCTCTTCCATCACCTTCCAAAGAAAGTGATTTTTGGTCTGATAATTTCTTGTATACTTTTTATCATCTTGGTAGGTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAGCAACTAGATGCGGCTGTGCAGCAAAACTTGACTTTGGAAGTTCGTGTCAGTCATCTCGACGGTGCACTCAAGGAATGTGTCAGGCAGTTGAGACAAGCAAGAGATGAGCAAGAGAAAATGATTCAAGACGCTATGGCAGAAAAAAATGAAATGGAATCTGAAAAAACTGCACTTGAGAAACAGCTACTTAAGCTCCAGACACAAGTGGAGGCTGGTAAAGCTGAAATGCCTACTTCTACTGATCCTGATATCCTTGTCAGGCTTAAGTATCTAGAGAAAGAGAATGCAGCTCTCAAAATTGAACTTGTCTC</genome_strand>
        <mrna_strand>GCTTGTGGTTTTTGGATATAATTGAGTAGTTAGTACTTGTTCTCTGACAATTCACAGCACAGATCTTTGACTGTCTGAATTTGTTTATTGCTTCATCAATCTGAAATCTTGAAACCCCAATTCATCTGTTATGGCTTCTTTACAGTAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACATTGTACTATGAGCATTTAGGAGATTAAATGCTTATTGAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAGAGTTCTGGTTCTTTATCTTCATATTCGGAGAGATACTCCGATGAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCACTAAAAGAATTTCCTGACCATGACAAACAGTCACCAGAGGTTACCTCAAAAGCTGCATTCGTTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAGAAGCTATCGCAG...................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAGCAACTAGATGCGGCTGTGCAGCAAAACTTGACTTTGGAAGTTCGTGTCAGTCATCTCGACGGTGCACTCAAGGAATGTGTCAGGCAGTTGAGACAAGCAAGAGATGAGCAAGAGAAAATGATTCAAGACGCTATGGCAGAAAAAAATGAAATGGAATCTGAAAAAACTGCACTTGAGAAACAGCTACTTAAGCTCCAGACACAAGTGGAGGCTGGTAAAGCTGAAATGCCTACTTCTACTGATCCTGATATCCTTGTCAGGCTTAAGTATCTAGAGAAAGAGAATGCAGCTCTCAAAATTGAACTTGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333694" ref_strand="+" ref_description="SGN-E333694 [cTOD-22-E7]">
      <seq>aaaatgcttattttttgagcttagatggatagttgagtggatttgaaggaaaactgaatgaacttgaagccaagttatagttgttgttaaatgacagtgtgtttggacagctggttgtattctgtagggtatagatggacattgtactatgagcatttaggagattaaatgcttattgagatggaaaagaggaaatggttgtggaaaaggagaccttccgataagagccctggtgaaacggagagttctggttctttatcttcatattcggagagatactccgatgagcaggatgcactaaaagaatttcctgaccatgacaaacagtcaccagaggttacctcaaaagctgcattcgttgatgatgaatccaaggaaagcttgagatgcttgacagagaaattatcagctgctcttgttaatgttagcgccaaagaagacttagttaagcagcatgctaaagttgccgaaaaagctatcgcaggttggggaaaggcagaaaatgaagttgcagttctaaagcaacaactagatgcggctgtgcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="47790" stop="51024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48090" g_stop="48223" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48224" i_stop="48348" i_length="125">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48349" g_stop="48505" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="291" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48506" i_stop="50080" i_length="1575">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50081" g_stop="50273" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="484" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50274" i_stop="50660" i_length="387">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50661" g_stop="50724" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="548" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E333694" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48090" e_stop="48223"/>
          <exon e_start="48349" e_stop="48505"/>
          <exon e_start="50081" e_stop="50273"/>
          <exon e_start="50661" e_stop="50724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCTTATTTTTTGAGCTTAGATGGATAGTTGAGTGGATTTGAAGGAAAACTGAATGAACTTGAAGCCAAGTTATAGTTGTTGTTAAATGACAGTGTGTTTGGACAGCTGGTTGTATTCTGTAGGGTATAGGTATATTAGTTGTTTCTTTGCATTTGGGATGGAGCTTAATCATATCAGAGGTTATCTGTGTCATTTTTCTGTTGGACTAATGTCTCTTTGTGTTGTTATTGATTGAGGGTATCAATTATATGCAGATGGACATTGTACTATGAGCATTTAGGAGATTAAATGCTTATTGAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAGAGTTCTGGTTCTTTATCTTCATATTCGGAGAGATACTCCGATGAGCAGGTAAAAGGCTTAAAGAGAAAGAGTTTTTCTTTTTTTGGTCTTTCAGTTAATTGTGCTGATATGGAATAATCTTATATCACATGGTTGGAAAAGATAAGCTGCTGTTTTTTAGAAACCTCACATTTAATCTTCACTTGCACCCCGGGTTTTAAATTGATAATGGTTGAGGTAAATATGCAGCTCAAATACTGACAGCTGAAAGTTTTTCGTGTCCGAGTACTGTATTTTCTTTCTACTTGCATATATATATATATATATGTACCAGTTTTGATTTTTGAAATATTTGGAAGGTCATTGGTCTTTATTGATCATCATCAGGTTTTCGCTATTGGTTTAGTTATAGAAATGACTAGCTTATAGTTATTGTAGACAAATAATCACAATAGATAGCCCCCCATATTGCTGAACCACCAGACTGCCCGTCATCATCTAGAGAACGTCCCTTCTCCGTGGTTTATCCAATTTCTACATTTAAATTGAGCCATAATTCTTCTCCCCTGTACTTCTTAACATTTATCTATTGTAAATGTTTACCTAAATGTTGGATTAGTATATAAATATTGTTATTTTATTGTCGTTTTTTCCTTTCAATCCTGCTTTGGTTACATTTTTTTGAGCTGAGGATCTATTAGAAATAACCTCTCTACCCCCACAAAGGTAGTGGTAAGGTCTGCATACATCCTACCCTACTTGTGGGGCTACACTTGTTCTCATTGAATTAGTATAAAGTTCCAGTTTTTAAGGTGCTTGGGAAGAATTATGTTTCATGACTTTATTAAAGAACACTAAGTTCCTCATAGAAGGGATTTATGATATCTATAAAACTAAATTGGTATAATACTAATTTGTTGTTTAATGATTCTGAGGTGATCTTTTTAAGAGTTTAAGGTTTTATTAAATGAAAAGTCTGCAGTCCAAGTTTGTAGCTAATTCACAAATCTCAGATCTATATGAGGCGAAAAGCAACATAAAAGAGATTGTTGTGATAGAATTTTGAGTATGTCAAACAGTTTATTTATCTGCAGAGCATCTCCTGAAATAGCAAATGTAAATTGCAGAGGCCGATTGAATAACAATTTATATGTGCAGCTAAAAACAGTAGTGGCTGAAGATTGACCTCTAGTTTGGTGCCTTGATATGCTTTCCAGTATAAAGATCTGTGCTCAGGTTAGATGGTAGCAGATGATGCAAGATCTTGGTTTGGAAAGAAAGTGCCAAAAGCTTTCATAAGTGATGTTTCTTACCGTAGTCAGCAGTTTCGTCCTGATAAGGAATATACTTTCACCCTTGACCCTTTTTTTTTGGTTGAGATTAGATGCTCTCAGTAAGTGTAAAGATGTTCCTATAGCTTTGTTAAAAGAAATATTGTCCTTATCACTGCACCATCCATTCCTTCTTTGTAGGGTCATTTGTCTCATATTGAAAATCATTCAATAGAAATCTTACTGACTAGCTGCCAGAGAACCATCTCTGTGCAATCTAGAACATTTTCTTGTCAAGAAAAGCTTTAACATTTTTAGCTATTGTATTACTTCTTTTACGAGAAAGGATCACCTGTTCTTTTCATTGAAGCAGGATGCACTAAAAGAATTTCCTGACCATGACAAACAGTCACCAGAGGTTACCTCAAAAGCTGCATTCGTTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAGAAGCTATCGCAGGTATCTTCTTCAACTCCTTTCTTCCTCTGTTGTGATTCCAATCTAATTAAGGCATTTGGACATTAAAATGTGATATTTGAAAAATAGAAGTTGTAAAAAGGGTATTTGGAAGTTGTAGTTGTGTGTTGGACATTCATTTAACTTGAAATAAATAGAAGCTCTGTGACCGGAAAAAAAGTTCACTTGAACTGTATTTCATTGGAAAAAAAGGAAAAAATAAATGGGAGCTAAGATTTGTCTCTTGGCTGTCTCTTCATGCACACCCCTTTTTCTGGTATGTGTTTCACACGCTGAAACAATTTTGTGGAATATGCCTCTTCCATCACCTTCCAAAGAAAGTGATTTTTGGTCTGATAATTTCTTGTATACTTTTTATCATCTTGGTAGGTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAGCAACTAGATGCGGCTGTGCAGCA</genome_strand>
        <mrna_strand>AAAATGCTTATTTTTTGAGCTTAGATGGATAGTTGAGTGGATTTGAAGGAAAACTGAATGAACTTGAAGCCAAGTTATAGTTGTTGTTAAATGACAGTGTGTTTGGACAGCTGGTTGTATTCTGTAGGGTATAG.............................................................................................................................ATGGACATTGTACTATGAGCATTTAGGAGATTAAATGCTTATTGAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAGAGTTCTGGTTCTTTATCTTCATATTCGGAGAGATACTCCGATGAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCACTAAAAGAATTTCCTGACCATGACAAACAGTCACCAGAGGTTACCTCAAAAGCTGCATTCGTTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAAAAGCTATCGCAG...................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGGAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAACAACTAGATGCGGCTGTGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486925" ref_strand="+" ref_description="SGN-E486925 [cSTE-23-N11]">
      <seq>gagatggaaaagaggaaatggttgtggaaaaggagaccttccgataagagccctggtgaaacggagagttctggttctttgtcttcatattcggagagatactctgatgagcaggatgcactaaaagaatttcctgaccatgacaagcagtcaccagaggtaacctcaaaagctgcatccattgatgatgaatccaaggaaagcttgagatgcttgacagagaaattatcagctgctcttgttaatgttagcgccaaagaagacttagttaagcagcatgctaaagttgctgaagaagctattgcaggttgggaaaaggcagaaaatgaagttgcagttctaaagcaacaactagatgcagctgtgcagcagaacttgactttggaagttcgtgtcagtcatctcgatggtgctctcaaggaatgtgtcaggcagttgagacaagctagagatgagcaagagaaaatgattcaagatgctatggcagaaaaaaatgaattggaatctgaaaaaactgcacttgagaaacagctacttaagctccagacacaagtggaggctggtaaagctgaaatgcctacttctactgatgctgatatccttgtccggctcaagtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="48092" stop="51273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48392" g_stop="48505" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48506" i_stop="50080" i_length="1575">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50081" g_stop="50273" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="307" r_length="193" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50274" i_stop="50660" i_length="387">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50661" g_stop="50973" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="620" r_length="313" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E486925" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48392" e_stop="48505"/>
          <exon e_start="50081" e_stop="50273"/>
          <exon e_start="50661" e_stop="50973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAGAGTTCTGGTTCTTTATCTTCATATTCGGAGAGATACTCCGATGAGCAGGTAAAAGGCTTAAAGAGAAAGAGTTTTTCTTTTTTTGGTCTTTCAGTTAATTGTGCTGATATGGAATAATCTTATATCACATGGTTGGAAAAGATAAGCTGCTGTTTTTTAGAAACCTCACATTTAATCTTCACTTGCACCCCGGGTTTTAAATTGATAATGGTTGAGGTAAATATGCAGCTCAAATACTGACAGCTGAAAGTTTTTCGTGTCCGAGTACTGTATTTTCTTTCTACTTGCATATATATATATATATATGTACCAGTTTTGATTTTTGAAATATTTGGAAGGTCATTGGTCTTTATTGATCATCATCAGGTTTTCGCTATTGGTTTAGTTATAGAAATGACTAGCTTATAGTTATTGTAGACAAATAATCACAATAGATAGCCCCCCATATTGCTGAACCACCAGACTGCCCGTCATCATCTAGAGAACGTCCCTTCTCCGTGGTTTATCCAATTTCTACATTTAAATTGAGCCATAATTCTTCTCCCCTGTACTTCTTAACATTTATCTATTGTAAATGTTTACCTAAATGTTGGATTAGTATATAAATATTGTTATTTTATTGTCGTTTTTTCCTTTCAATCCTGCTTTGGTTACATTTTTTTGAGCTGAGGATCTATTAGAAATAACCTCTCTACCCCCACAAAGGTAGTGGTAAGGTCTGCATACATCCTACCCTACTTGTGGGGCTACACTTGTTCTCATTGAATTAGTATAAAGTTCCAGTTTTTAAGGTGCTTGGGAAGAATTATGTTTCATGACTTTATTAAAGAACACTAAGTTCCTCATAGAAGGGATTTATGATATCTATAAAACTAAATTGGTATAATACTAATTTGTTGTTTAATGATTCTGAGGTGATCTTTTTAAGAGTTTAAGGTTTTATTAAATGAAAAGTCTGCAGTCCAAGTTTGTAGCTAATTCACAAATCTCAGATCTATATGAGGCGAAAAGCAACATAAAAGAGATTGTTGTGATAGAATTTTGAGTATGTCAAACAGTTTATTTATCTGCAGAGCATCTCCTGAAATAGCAAATGTAAATTGCAGAGGCCGATTGAATAACAATTTATATGTGCAGCTAAAAACAGTAGTGGCTGAAGATTGACCTCTAGTTTGGTGCCTTGATATGCTTTCCAGTATAAAGATCTGTGCTCAGGTTAGATGGTAGCAGATGATGCAAGATCTTGGTTTGGAAAGAAAGTGCCAAAAGCTTTCATAAGTGATGTTTCTTACCGTAGTCAGCAGTTTCGTCCTGATAAGGAATATACTTTCACCCTTGACCCTTTTTTTTTGGTTGAGATTAGATGCTCTCAGTAAGTGTAAAGATGTTCCTATAGCTTTGTTAAAAGAAATATTGTCCTTATCACTGCACCATCCATTCCTTCTTTGTAGGGTCATTTGTCTCATATTGAAAATCATTCAATAGAAATCTTACTGACTAGCTGCCAGAGAACCATCTCTGTGCAATCTAGAACATTTTCTTGTCAAGAAAAGCTTTAACATTTTTAGCTATTGTATTACTTCTTTTACGAGAAAGGATCACCTGTTCTTTTCATTGAAGCAGGATGCACTAAAAGAATTTCCTGACCATGACAAACAGTCACCAGAGGTTACCTCAAAAGCTGCATTCGTTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAGAAGCTATCGCAGGTATCTTCTTCAACTCCTTTCTTCCTCTGTTGTGATTCCAATCTAATTAAGGCATTTGGACATTAAAATGTGATATTTGAAAAATAGAAGTTGTAAAAAGGGTATTTGGAAGTTGTAGTTGTGTGTTGGACATTCATTTAACTTGAAATAAATAGAAGCTCTGTGACCGGAAAAAAAGTTCACTTGAACTGTATTTCATTGGAAAAAAAGGAAAAAATAAATGGGAGCTAAGATTTGTCTCTTGGCTGTCTCTTCATGCACACCCCTTTTTCTGGTATGTGTTTCACACGCTGAAACAATTTTGTGGAATATGCCTCTTCCATCACCTTCCAAAGAAAGTGATTTTTGGTCTGATAATTTCTTGTATACTTTTTATCATCTTGGTAGGTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAGCAACTAGATGCGGCTGTGCAGCAAAACTTGACTTTGGAAGTTCGTGTCAGTCATCTCGACGGTGCACTCAAGGAATGTGTCAGGCAGTTGAGACAAGCAAGAGATGAGCAAGAGAAAATGATTCAAGACGCTATGGCAGAAAAAAATGAAATGGAATCTGAAAAAACTGCACTTGAGAAACAGCTACTTAAGCTCCAGACACAAGTGGAGGCTGGTAAAGCTGAAATGCCTACTTCTACTGATCCTGATATCCTTGTCAGGCTTAAGTATCT</genome_strand>
        <mrna_strand>GAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAGAGTTCTGGTTCTTTGTCTTCATATTCGGAGAGATACTCTGATGAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCACTAAAAGAATTTCCTGACCATGACAAGCAGTCACCAGAGGTAACCTCAAAAGCTGCATCCATTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCTGAAGAAGCTATTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAACAACTAGATGCAGCTGTGCAGCAGAACTTGACTTTGGAAGTTCGTGTCAGTCATCTCGATGGTGCTCTCAAGGAATGTGTCAGGCAGTTGAGACAAGCTAGAGATGAGCAAGAGAAAATGATTCAAGATGCTATGGCAGAAAAAAATGAATTGGAATCTGAAAAAACTGCACTTGAGAAACAGCTACTTAAGCTCCAGACACAAGTGGAGGCTGGTAAAGCTGAAATGCCTACTTCTACTGATGCTGATATCCTTGTCCGGCTCAAGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747116" ref_strand="+" ref_description="SGN-E747116 [GI|22652088]">
      <seq>caaagaagacttagttaagcagcatgctaaagttgccgaagaagctatcgcaggttgggaaaaggcagaaaatgaagttgcagttctaaagcagcaactagatgcggctgtgcagcaaaacttgactttggaagttcgtgtcagtcatctcgacggtgcactcaaggaatgtgtcaggcagttgagacaagcaagagatgagcaagagaaaatgattcaagacgctatggcagaaaaaaatgaaatggaatctgaaaaaactgcacttgagaaacagctacttaagctccagacacaagtggaggctggtaaagctgaaatgcctacttctactgatcctgatatccttgtcaggcttaagtatctagagaaagagaatgcagctctcaaaattgaacttgtctcttgttcagaagtgttggaaattaggactattgagagggatttgagtactcaagcagcagaaactgccagcaagcagcagctggaaagcataaaaaaactgaccaaacttgaagttgagtgtcgaaagctacaggccatggctcgcaaatcatccccattcaatgatcaacgctcctctgctgtttcatctttctatgtggactctgtcaccgatagccagtctgacagtggagagcggttaaacacagttgacaatgatgccctcaaaatgagtaaactggaaacaagagaatatgaaccaagttgctcaaattcatgggcttcagcactcattgctgagcttgatcaatttaagaatgaaaaggccatgcctaaaactcttgctgcctgttctatagaaatcgatatgatggatgatttcttggagatggagcaacttgctgcattatctgaaactgcaaacaagacaccttcagtaacttctgatgctgttcctcatgattctcccaatattgagaaccctttggcagcagaatacaattccatttcacaaagggtggttgaattagaacaaaagctggagaagattgaagcagagaaagctgaactggagaatgctttcaacgagagtcaagatgcccttaaagtgtcctctttgcagcttaaggaaactcaaaccaggttggaagggctgcagaaggagctagatgtggtaaatgagtcaaaagagttgctcgagtttcaactctatggcatggaggtagaagcacggacaatgtctgtaaatattgattctttgaagacggaagttgaaaaagaaaaatctttgtcatcagaaatggaagctaaatgtcatgaattggaaaacgaccttagaaaaaaatcccaggaagctgaagctcagcaaacttctggttcaaatagtgaattgaaaataaaacaggaggatttagccgtggctgctgacaagcttgcagaatgccagaaaacaattgcatcccttgggaaacagctacaatccctagctactctagaagatttcctgacagacactgcaaatcttcctggtggaggagcagttgttgctaaagcaggaggagaactatggaagttgcatgtaaacgagacatttaccccaaaacgtgattctgatcctaccaaggttgaggagaatgtgagtcattctacaaacgaaaatgaaggggaatctccagcatcttcatcttcatcatctacttcatccactactcaggctagcactggcaaaagcaaaaatggctttgggaagttgttttctcggagtaagagtggagttccaactctaaaagttatcgaggataaataaatagaggaagaatgttgagaaggttggaacataatttgtaaaaggtttatcagttacatggctgatcaaattctgtttgataagcaaactgtttgcttcaatagttatgatgaatatcttgagaagcttcaaatagcaatagacaccttgaatttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="49921" stop="52928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50221" g_stop="50273" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50274" i_stop="50660" i_length="387">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50661" g_stop="51955" g_length="1295"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="1348" r_length="1295" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51956" i_stop="52068" i_length="113">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52069" g_stop="52626" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1349" r_stop="1906" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1907" polyA_stop="1927"/>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E747116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1906</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50221" e_stop="50273"/>
          <exon e_start="50661" e_stop="51955"/>
          <exon e_start="52069" e_stop="52626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAGAAGCTATCGCAGGTATCTTCTTCAACTCCTTTCTTCCTCTGTTGTGATTCCAATCTAATTAAGGCATTTGGACATTAAAATGTGATATTTGAAAAATAGAAGTTGTAAAAAGGGTATTTGGAAGTTGTAGTTGTGTGTTGGACATTCATTTAACTTGAAATAAATAGAAGCTCTGTGACCGGAAAAAAAGTTCACTTGAACTGTATTTCATTGGAAAAAAAGGAAAAAATAAATGGGAGCTAAGATTTGTCTCTTGGCTGTCTCTTCATGCACACCCCTTTTTCTGGTATGTGTTTCACACGCTGAAACAATTTTGTGGAATATGCCTCTTCCATCACCTTCCAAAGAAAGTGATTTTTGGTCTGATAATTTCTTGTATACTTTTTATCATCTTGGTAGGTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAGCAACTAGATGCGGCTGTGCAGCAAAACTTGACTTTGGAAGTTCGTGTCAGTCATCTCGACGGTGCACTCAAGGAATGTGTCAGGCAGTTGAGACAAGCAAGAGATGAGCAAGAGAAAATGATTCAAGACGCTATGGCAGAAAAAAATGAAATGGAATCTGAAAAAACTGCACTTGAGAAACAGCTACTTAAGCTCCAGACACAAGTGGAGGCTGGTAAAGCTGAAATGCCTACTTCTACTGATCCTGATATCCTTGTCAGGCTTAAGTATCTAGAGAAAGAGAATGCAGCTCTCAAAATTGAACTTGTCTCTTGTTCAGAAGTGTTGGAAATTAGGACTATTGAGAGGGATTTGAGTACTCAAGCAGCAGAAACTGCCAGCAAGCAGCAGCTGGAAAGCATAAAAAAACTGACCAAACTTGAAGTTGAGTGTCGAAAGCTACAGGCCATGGCTCGCAAATCATCCCCATTCAATGATCAACGCTCCTCTGCTGTTTCATCTTTCTATGTGGACTCTGTCACCGATAGCCAGTCTGACAGTGGAGAGCGGTTAAACACAGTTGACAATGATGCCCTCAAAATGAGTAAACTGGAAACAAGAGAATATGAACCAAGTTGCTCAAATTCATGGGCTTCAGCACTCATTGCTGAGCTTGATCAATTTAAGAATGAAAAGGCCATGCCTAAAACTCTTGCTGCCTGTTCTATAGAAATCGATATGATGGATGATTTCTTGGAGATGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATACAATTCCATTTCACAAAGGGTGGTTGAATTAGAACAAAAGCTGGAGAAGATTGAAGCAGAGAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAGATGCCCTTAAAGTGTCCTCTTTGCAGCTTAAGGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAGACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACTTCTGGTTCAAATAGTGAATTGAAAATAAAACAGGTAGCTCTTTCTCTCAACCTATCTTCCGTTGTTTGTCATTTATGTATAGACACATCGATGTGAAGAAAAGAAGATGAAAATTAATAATGGTATGTAAACTTTCTCACTAGCAGGAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTCTAGAAGATTTCCTGACAGACACTGCAAATCTTCCTGGTGGAGGAGCAGTTGTTGCTAAAGCAGGAGGAGAACTATGGAAGTTGCATGTAAACGAGACATTTACCCCAAAACGTGATTCTGATCCTACCAAGGTTGAGGAGAATGTGAGTCATTCTACAAACGAAAATGAAGGGGAATCTCCAGCATCTTCATCTTCATCATCTACTTCATCCACTACTCAGGCTAGCACTGGCAAAAGCAAAAATGGCTTTGGGAAGTTGTTTTCTCGGAGTAAGAGTGGAGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGGAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTA</genome_strand>
        <mrna_strand>CAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAGAAGCTATCGCAG...................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAGCAACTAGATGCGGCTGTGCAGCAAAACTTGACTTTGGAAGTTCGTGTCAGTCATCTCGACGGTGCACTCAAGGAATGTGTCAGGCAGTTGAGACAAGCAAGAGATGAGCAAGAGAAAATGATTCAAGACGCTATGGCAGAAAAAAATGAAATGGAATCTGAAAAAACTGCACTTGAGAAACAGCTACTTAAGCTCCAGACACAAGTGGAGGCTGGTAAAGCTGAAATGCCTACTTCTACTGATCCTGATATCCTTGTCAGGCTTAAGTATCTAGAGAAAGAGAATGCAGCTCTCAAAATTGAACTTGTCTCTTGTTCAGAAGTGTTGGAAATTAGGACTATTGAGAGGGATTTGAGTACTCAAGCAGCAGAAACTGCCAGCAAGCAGCAGCTGGAAAGCATAAAAAAACTGACCAAACTTGAAGTTGAGTGTCGAAAGCTACAGGCCATGGCTCGCAAATCATCCCCATTCAATGATCAACGCTCCTCTGCTGTTTCATCTTTCTATGTGGACTCTGTCACCGATAGCCAGTCTGACAGTGGAGAGCGGTTAAACACAGTTGACAATGATGCCCTCAAAATGAGTAAACTGGAAACAAGAGAATATGAACCAAGTTGCTCAAATTCATGGGCTTCAGCACTCATTGCTGAGCTTGATCAATTTAAGAATGAAAAGGCCATGCCTAAAACTCTTGCTGCCTGTTCTATAGAAATCGATATGATGGATGATTTCTTGGAGATGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATACAATTCCATTTCACAAAGGGTGGTTGAATTAGAACAAAAGCTGGAGAAGATTGAAGCAGAGAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAGATGCCCTTAAAGTGTCCTCTTTGCAGCTTAAGGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAGACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACTTCTGGTTCAAATAGTGAATTGAAAATAAAACAG.................................................................................................................GAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTCTAGAAGATTTCCTGACAGACACTGCAAATCTTCCTGGTGGAGGAGCAGTTGTTGCTAAAGCAGGAGGAGAACTATGGAAGTTGCATGTAAACGAGACATTTACCCCAAAACGTGATTCTGATCCTACCAAGGTTGAGGAGAATGTGAGTCATTCTACAAACGAAAATGAAGGGGAATCTCCAGCATCTTCATCTTCATCATCTACTTCATCCACTACTCAGGCTAGCACTGGCAAAAGCAAAAATGGCTTTGGGAAGTTGTTTTCTCGGAGTAAGAGTGGAGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGGAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344816" ref_strand="+" ref_description="SGN-E344816 [cTOF-21-C2]">
      <seq>atcgatatgatggatgatttcttggagatggagcaacttgctgcattatctgaaactgcaaacaagacaccttcagtaacttctgatgctgttcctcatgattctcccaatattgagaaccctttggcagcagaatacaattccatttcacaaagggtggttgaattagaacaaaagctggagaagattgaagcagagaaagctgaactggagaatgctttcaacgagagtcaagatgcccttaaagtgtcctctttgcagcttaaggaaactcaaaccaggttggaagggctgcagaaggagctagatgtggtaaatgagtcaaaagagttgctcgagtttcaactctatggcatggaggtagaagcacggacaatgtctgtaaatattgattctttgaagacggaagttgaaaaagaaaaatctttgtcatcagaaatggaagctaaatgtcatgaattggaaaacgaccttagaaaaaaatcccaggaagctgaagctcagcaaacttctggttcaaatagtgaattgaaaataaaacaggaggatttagccgtggctgctgacaagcttgcagaatgccagaaaacaattgcatcccttgggaaacagctacaatccctagctactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="51113" stop="52457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51413" g_stop="51955" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51956" i_stop="52068" i_length="113">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52069" g_stop="52157" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="632" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E344816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51413" e_stop="51955"/>
          <exon e_start="52069" e_stop="52157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATATGATGGATGATTTCTTGGAGATGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATACAATTCCATTTCACAAAGGGTGGTTGAATTAGAACAAAAGCTGGAGAAGATTGAAGCAGAGAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAGATGCCCTTAAAGTGTCCTCTTTGCAGCTTAAGGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAGACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACTTCTGGTTCAAATAGTGAATTGAAAATAAAACAGGTAGCTCTTTCTCTCAACCTATCTTCCGTTGTTTGTCATTTATGTATAGACACATCGATGTGAAGAAAAGAAGATGAAAATTAATAATGGTATGTAAACTTTCTCACTAGCAGGAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTCT</genome_strand>
        <mrna_strand>ATCGATATGATGGATGATTTCTTGGAGATGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATACAATTCCATTTCACAAAGGGTGGTTGAATTAGAACAAAAGCTGGAGAAGATTGAAGCAGAGAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAGATGCCCTTAAAGTGTCCTCTTTGCAGCTTAAGGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAGACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACTTCTGGTTCAAATAGTGAATTGAAAATAAAACAG.................................................................................................................GAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346658" ref_strand="+" ref_description="SGN-E346658 [cTOF-28-I5]">
      <seq>tcgatatgatggatgctttcttggagaaggagcaacttgctgcattatctgaaactgcaaacaagacaccttcagtaacttctgatgctgttcctcatgattctcccaatattgagaaccctttggcagcagaataccaattccatttcacaaagggtggttgaattagaaccaaagctggagaagattgaagcagaaaaagctgaactggagaatgctttcaacgagagtcaagaatgcccttaaagtgtcctctttgcagcttaagggaaactcaaaccaggttggaagggctgcagaaggagctagatgtggtaaatgagtcaaaagagttgctcgagtttcaactctatggcatggaggtagaagcacggacaatgtctgtaaatattgattctttgaaaacggaagttgaaaaagaaaaatctttgtcatcagaaatggaagctaaatgtcatgaattggaaaacgaccttagaaaaaaatcccaggaagctgaagctcagcaaacntctggttcaaatagtgaattgaaaataaaacaggaggatttagccgtggctgctgacaagcttgcagaatgccagaaaacaattgcatcccttgggaaacagctacaatccctagctactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="51114" stop="52456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51414" g_stop="51955" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51956" i_stop="52068" i_length="113">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52069" g_stop="52156" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="633" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E346658" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51414" e_stop="51955"/>
          <exon e_start="52069" e_stop="52156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATATGATGGATGATTTCTTGGAGATGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATA-CAATTCCATTTCACAAAGGGTGGTTGAATTAGAACAAAAGCTGGAGAAGATTGAAGCAGAGAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAG-ATGCCCTTAAAGTGTCCTCTTTGCAGCTTAA-GGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAGACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACTTCTGGTTCAAATAGTGAATTGAAAATAAAACAGGTAGCTCTTTCTCTCAACCTATCTTCCGTTGTTTGTCATTTATGTATAGACACATCGATGTGAAGAAAAGAAGATGAAAATTAATAATGGTATGTAAACTTTCTCACTAGCAGGAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTC</genome_strand>
        <mrna_strand>TCGATATGATGGATGCTTTCTTGGAGAAGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATACCAATTCCATTTCACAAAGGGTGGTTGAATTAGAACCAAAGCTGGAGAAGATTGAAGCAGAAAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAGAATGCCCTTAAAGTGTCCTCTTTGCAGCTTAAGGGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAAACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACNTCTGGTTCAAATAGTGAATTGAAAATAAAACAG.................................................................................................................GAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236803" ref_strand="+" ref_description="SGN-E236803 [cLEL-7-G13](-)">
      <seq>gagtcattctacaaacgaaaatgaaggggaatctccagcatcttcatcttcatcatctacttcatccactactcaggctagcactggcaaaagcaaaaatggctttgggaagttgttttctcggagtaagagtggagttccaactctaaaagttatcgaggataaataaatagaggaagaatgttgagaaggttggaacataatttgtaaaaggtttatcagttacatggctgatcaaattctgtttgataagcaaactgtttgcttcaatagttatgatgaatatcttgagaagcttcaaatagcaatagacaccttgaatttacactgctttggctaatctccctctttttatttaatccatttcagtatatttttgtctccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="52002" stop="52986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52302" g_stop="52679" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="401"/>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E236803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52302" e_stop="52679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCATTCTACAAACGAAAATGAAGGGGAATCTCCAGCATCTTCATCTTCATCATCTACTTCATCCACTACTCAGGCTAGCACTGGCAAAAGCAAAAATGGCTTTGGGAAGTTGTTTTCTCGGAGTAAGAGTGGAGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGGAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTACACTGCTTTGGCTAATCTCCCTCTTTTTATTTAATCCATTTCAGTATATTTTT</genome_strand>
        <mrna_strand>GAGTCATTCTACAAACGAAAATGAAGGGGAATCTCCAGCATCTTCATCTTCATCATCTACTTCATCCACTACTCAGGCTAGCACTGGCAAAAGCAAAAATGGCTTTGGGAAGTTGTTTTCTCGGAGTAAGAGTGGAGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGGAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTACACTGCTTTGGCTAATCTCCCTCTTTTTATTTAATCCATTTCAGTATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236937" ref_strand="+" ref_description="SGN-E236937 [cLEL-7-G13](-)">
      <seq>tagcactggcaaaagcaaaaatggctttgaaaagttgttttctcggagtaagaagtggaagttccaactctaaaagttatcgaggataaataaatagagaaagaatgttgagaaggttggaacataatttgtaaaaggtttatcagttacatggctgatcaaattctgtttgataagcaaactgtttgcttcaatagttatgatgaatatcttgagaagcttcaaatagcaatagacaccttgaatttacactgctttggctaatctccctctttttatttaatccatttcagtatatttttgtatccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="52080" stop="52986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52380" g_stop="52679" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="309" polyA_stop="325"/>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E236937" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52380" e_stop="52679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCACTGGCAAAAGCAAAAATGGCTTTGGGAAGTTGTTTTCTCGGAGTAAG-AGTGG-AGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGGAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTACACTGCTTTGGCTAATCTCCCTCTTTTTATTTAATCCATTTCAGTATATTTTT</genome_strand>
        <mrna_strand>TAGCACTGGCAAAAGCAAAAATGGCTTTGAAAAGTTGTTTTCTCGGAGTAAGAAGTGGAAGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGAAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTACACTGCTTTGGCTAATCTCCCTCTTTTTATTTAATCCATTTCAGTATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735380" ref_strand="+" ref_description="SGN-E735380 [LC01BD06]">
      <seq>agccattgctactgctactgctatttctctttcacttcctttctctttgtgccgctctaacaagtcttgtactagaaagtttgtcaaagggagctttggagtatttgctgtgtatggggaggagggtgggattccagataagaaaagttcctggttgacactctttaatgtggaagatcccaggactaaagttccacaaagtaaaggcaagttcttggatgcaaatcaagctttagaagttgctagatatgatctacaatactgtgattggagagctaggcaagatgtacttactataatgctgctacacgaaaaggttgtggaagtattaaaccctctggcacgcgattataaatctattggaaccatgaagaaggaacttgcagaattgcaagaagaactttctcaggctcacaaccaggtacatatatcagaggcccgggtttctgctgctttagataagctagcttacatggaagaattggttaacgataggcttctgcaagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaagcaagcaaccacgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatgttaccgattgattgctttgagcaatcgtgggtgatctttcgtggggctgatggaaaacctggatgtgtccggaatacatgtgcacatagagcctgccctcttgatcttggctcagtaaatgagggtcgcatccaatgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="53690" stop="56367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53990" g_stop="54068" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54069" i_stop="54686" i_length="618">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54687" g_stop="54923" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="316" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54924" i_stop="55156" i_length="233">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55157" g_stop="55261" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="421" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55262" i_stop="55447" i_length="186">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55448" g_stop="55723" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="697" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55927" g_stop="56067" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="838" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E735380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53990" e_stop="54068"/>
          <exon e_start="54687" e_stop="54923"/>
          <exon e_start="55157" e_stop="55261"/>
          <exon e_start="55448" e_stop="55723"/>
          <exon e_start="55927" e_stop="56067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATTGCTACTGCTACTGCTATTTCTCTTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAGGTATTCTTTACTTTCTTTTACTTTTTTTTTTTGTTGGGTGTTTGCAAGAAACTATAAAGATTGCTTCTTTGTCTTGATTAAGCTTGTTTATGGAGACCCTTTTTTAAATTGTAGTGAAAAAAGATCATAAAAGTCAGTTTCTTGATGTTGGTTATGTGTATATAGATTTCAAAACTCAAAGGGGTATGCACTTTCGTATTTTGAAACATGTTTGTAGAATTGTAGTGTCAAAAGTGGATCAGTTTTGATTTAGTGATCTTGTGGATTAGTAATATTTTTTGCATAGGTTGGTAACTTAGCCAGTTAAGCTCTTTTACTGCACTCTGATGGAGAGTTCTGATTGTTCACAATACTTGAAATTTAGGTGCTTTTTGTCATGAAAATTTTGAGTGTTTGGAAAAAGTAGTTTTTATTTCGAATAATGAAAGATGATATTTGAAAATTCTTTGATTGTCCAATAGATTATCTGCAAGAATAAGCTCATAGTCGTTTAATCGAGTAGTCCTTTAGGCTATTGTTCATGAAATAGCAGAATGGAGATTCATATGTCACTTGCGTTTTCTTCGTCTGAGCAGAAGAATTGACTGTCTACTGATTTTGCATCTTGTTCACAATCAGTTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAGGTACATATTTGAATTAATGTGTGTACTGAACTTGAAAACCTGGTAAAATACAACATCCATTATCTTTATCTAGGTCTATTTACAAGTTTGTTGCATTGCTCTTTCTCATTTGCCTTGCTTTCCAAATATAGTTCACTTTATTTACTCTCTATTGTACCTTTCTTAGAGTTATTTCAAATTTTCCCAGTCTTCATCGTATTCTACATTGTATTCTAATCAGTTCATGTAACTAGGTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAGGTTTGGAAAATTCATTTTGATACAAATTGCATTTTCTGGTTATTCAGGGTGATTTCCCTTCTATATGTCAAACTTATTGAAACGAGTCTTCTGAAAAATAAATGGAAAGTTATATGGAAAAACATTTCCAGGATATTGCTTAGTTTCTCATAAGTATAAAGCTTTATATGTGAACCAATTCAACAGGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCT</genome_strand>
        <mrna_strand>AGCCATTGCTACTGCTACTGCTATTTCTCTTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG.........................................................................................................................................................................................................................................GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG..........................................................................................................................................................................................GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740530" ref_strand="+" ref_description="SGN-E740530 [LC21DD01]">
      <seq>ccctttgaaacagctactgctatttctctttcacttcctttctctttgtgccgctctaacaagtcttgtactagaaaggactaaagttccacaaagtaaaggcaagttcttggatgcaaatcaagctttagaagttgctagatatgatctacaatactgtgattggagagctaggcaagatgtacttactataatgctgctacacgaaaaggttgtggaagtattaaaccctctggcacgcgattataaatctattggaaccatgaagaaggaacttgcagaattgcaagaagaactttctcaggctcacaaccaggtacatatatcagaggcccgggtttctgctgctttagataagctagcttacatggaagaattggttaacgataggcttctgcaagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaagcaagcaaccacgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatgttaccgattgattgctttgagcaatcgtgggtgatctttcgtggggctgatggaaaacctggatgtgtccggaatacatgtgcacatagagcctgccctcttgatcttggctcagtaaatganggtcgcatccaatgcccttatcacggatgggagtattccaccgacgggaagtgtgagaaaatgccatcaacaagattactgaatgtaaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="53692" stop="56572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53991" g_stop="54068" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54069" i_stop="54790" i_length="722">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54791" g_stop="54923" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="211" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54924" i_stop="55156" i_length="233">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55157" g_stop="55261" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="316" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55262" i_stop="55447" i_length="186">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55448" g_stop="55723" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="592" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55927" g_stop="56074" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="740" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56205" g_stop="56272" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="808" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E740530" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53991" e_stop="54068"/>
          <exon e_start="54791" e_stop="54923"/>
          <exon e_start="55157" e_stop="55261"/>
          <exon e_start="55448" e_stop="55723"/>
          <exon e_start="55927" e_stop="56074"/>
          <exon e_start="56205" e_stop="56272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTGCTACTGCTACTGCTATTTCTCTTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAGGTATTCTTTACTTTCTTTTACTTTTTTTTTTTGTTGGGTGTTTGCAAGAAACTATAAAGATTGCTTCTTTGTCTTGATTAAGCTTGTTTATGGAGACCCTTTTTTAAATTGTAGTGAAAAAAGATCATAAAAGTCAGTTTCTTGATGTTGGTTATGTGTATATAGATTTCAAAACTCAAAGGGGTATGCACTTTCGTATTTTGAAACATGTTTGTAGAATTGTAGTGTCAAAAGTGGATCAGTTTTGATTTAGTGATCTTGTGGATTAGTAATATTTTTTGCATAGGTTGGTAACTTAGCCAGTTAAGCTCTTTTACTGCACTCTGATGGAGAGTTCTGATTGTTCACAATACTTGAAATTTAGGTGCTTTTTGTCATGAAAATTTTGAGTGTTTGGAAAAAGTAGTTTTTATTTCGAATAATGAAAGATGATATTTGAAAATTCTTTGATTGTCCAATAGATTATCTGCAAGAATAAGCTCATAGTCGTTTAATCGAGTAGTCCTTTAGGCTATTGTTCATGAAATAGCAGAATGGAGATTCATATGTCACTTGCGTTTTCTTCGTCTGAGCAGAAGAATTGACTGTCTACTGATTTTGCATCTTGTTCACAATCAGTTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAGGTACATATTTGAATTAATGTGTGTACTGAACTTGAAAACCTGGTAAAATACAACATCCATTATCTTTATCTAGGTCTATTTACAAGTTTGTTGCATTGCTCTTTCTCATTTGCCTTGCTTTCCAAATATAGTTCACTTTATTTACTCTCTATTGTACCTTTCTTAGAGTTATTTCAAATTTTCCCAGTCTTCATCGTATTCTACATTGTATTCTAATCAGTTCATGTAACTAGGTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAGGTTTGGAAAATTCATTTTGATACAAATTGCATTTTCTGGTTATTCAGGGTGATTTCCCTTCTATATGTCAAACTTATTGAAACGAGTCTTCTGAAAAATAAATGGAAAGTTATATGGAAAAACATTTCCAGGATATTGCTTAGTTTCTCATAAGTATAAAGCTTTATATGTGAACCAATTCAACAGGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACGGTGAGATAAATTTGAATCCTTCCATTTACAGTCCAGAGTTCATACTCGAGAGATGGACAGCTTTTAAATGGGTTTTGTAGAGGACATGGAATAGCTTACACTGAGTTTCATGTTTGTTAAATGAATTTAGGATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATC</genome_strand>
        <mrna_strand>CCCTTTGAAACAGCTACTGCTATTTCTCTTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG.........................................................................................................................................................................................................................................GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG..........................................................................................................................................................................................GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGANGGTCGCATCCAATGCCCTTATCACG..................................................................................................................................GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729872" ref_strand="+" ref_description="SGN-E729872 [LA22BE01]">
      <seq>ggcacgagggctactgctatttctctttcacttcctttctctttgtgccgctctaacaagtcttgtactagaaagtttgtcaaagggagctttggagtatttgctgtgtatggggaggagggtgggattccagataagaaaagttcctggttgacactctttaatgtggaagatcccaggactaaagttccacaaagtaaaggcaagttcttggatgcaaatcaagctttagaagttgctagatatgatctacaatactgtgattggagagctaggcaagatgtacttactataatgctgctacacgaaaaggttgtggaagtattaaaccctctggcacgcgattataaatctattggaaccatgaagaaggaacttgcagaattgcaagaagaactttctcaggctcacaaccaggtacatatatcagaggcccgggtttctgctgctttagataagctagcttacatggaagaattggttaacgataggcttctgcaagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaagcaagcaaccacgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatgttaccgattgattgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="53698" stop="56025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53994" g_stop="54068" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54069" i_stop="54686" i_length="618">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54687" g_stop="54923" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="312" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54924" i_stop="55156" i_length="233">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55157" g_stop="55261" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="417" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55262" i_stop="55447" i_length="186">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55448" g_stop="55723" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="693" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55927" g_stop="55943" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="710" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E729872" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53994" e_stop="54068"/>
          <exon e_start="54687" e_stop="54923"/>
          <exon e_start="55157" e_stop="55261"/>
          <exon e_start="55448" e_stop="55723"/>
          <exon e_start="55927" e_stop="55943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTACTGCTACTGCTATTTCTCTTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAGGTATTCTTTACTTTCTTTTACTTTTTTTTTTTGTTGGGTGTTTGCAAGAAACTATAAAGATTGCTTCTTTGTCTTGATTAAGCTTGTTTATGGAGACCCTTTTTTAAATTGTAGTGAAAAAAGATCATAAAAGTCAGTTTCTTGATGTTGGTTATGTGTATATAGATTTCAAAACTCAAAGGGGTATGCACTTTCGTATTTTGAAACATGTTTGTAGAATTGTAGTGTCAAAAGTGGATCAGTTTTGATTTAGTGATCTTGTGGATTAGTAATATTTTTTGCATAGGTTGGTAACTTAGCCAGTTAAGCTCTTTTACTGCACTCTGATGGAGAGTTCTGATTGTTCACAATACTTGAAATTTAGGTGCTTTTTGTCATGAAAATTTTGAGTGTTTGGAAAAAGTAGTTTTTATTTCGAATAATGAAAGATGATATTTGAAAATTCTTTGATTGTCCAATAGATTATCTGCAAGAATAAGCTCATAGTCGTTTAATCGAGTAGTCCTTTAGGCTATTGTTCATGAAATAGCAGAATGGAGATTCATATGTCACTTGCGTTTTCTTCGTCTGAGCAGAAGAATTGACTGTCTACTGATTTTGCATCTTGTTCACAATCAGTTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAGGTACATATTTGAATTAATGTGTGTACTGAACTTGAAAACCTGGTAAAATACAACATCCATTATCTTTATCTAGGTCTATTTACAAGTTTGTTGCATTGCTCTTTCTCATTTGCCTTGCTTTCCAAATATAGTTCACTTTATTTACTCTCTATTGTACCTTTCTTAGAGTTATTTCAAATTTTCCCAGTCTTCATCGTATTCTACATTGTATTCTAATCAGTTCATGTAACTAGGTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAGGTTTGGAAAATTCATTTTGATACAAATTGCATTTTCTGGTTATTCAGGGTGATTTCCCTTCTATATGTCAAACTTATTGAAACGAGTCTTCTGAAAAATAAATGGAAAGTTATATGGAAAAACATTTCCAGGATATTGCTTAGTTTCTCATAAGTATAAAGCTTTATATGTGAACCAATTCAACAGGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTT</genome_strand>
        <mrna_strand>GGCACGAGGGCTACTGCTATTTCTCTTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG.........................................................................................................................................................................................................................................GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG..........................................................................................................................................................................................GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................TTACCGATTGATTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347613" ref_strand="+" ref_description="SGN-E347613 [cTOF-26-F23]">
      <seq>tttcacttcctttctctttgtgccgctctaacaagtcttgtactagaaagtttgtcaaagggagctttggagtatttgctgtgtatggggaggagggtgggattccagataagaaaagttcctggttgacactctttaatgtggaagatcccaggactaaagttccacaaagtaaaggcaagttcttggatgcaaatcaagctttagaagttgctagatatgatctacaatactgtgattggagagctaggcaagatgtacttactataatgctgctacacgaaaaggttgtggaagtattaaaccctctggcacgcgattataaatctattggaaccatgaagaaggaacttgcagaattgcaagaagaactttctcaggctcacaaccaggtacatatatcagaggcccgggtttctgctgctttagataagctagcttacatggaagaattggttaacgataggcttctgcaagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaagcaagcaaccacgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatgttaccgattgattgctttgagcaatcgtgggtgatctttcgtggggctgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="53719" stop="56279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54019" g_stop="54068" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54069" i_stop="54686" i_length="618">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54687" g_stop="54923" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="287" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54924" i_stop="55156" i_length="233">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55157" g_stop="55261" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="392" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55262" i_stop="55447" i_length="186">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55448" g_stop="55723" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="668" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55927" g_stop="55979" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="721" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E347613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54019" e_stop="54068"/>
          <exon e_start="54687" e_stop="54923"/>
          <exon e_start="55157" e_stop="55261"/>
          <exon e_start="55448" e_stop="55723"/>
          <exon e_start="55927" e_stop="55979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAGGTATTCTTTACTTTCTTTTACTTTTTTTTTTTGTTGGGTGTTTGCAAGAAACTATAAAGATTGCTTCTTTGTCTTGATTAAGCTTGTTTATGGAGACCCTTTTTTAAATTGTAGTGAAAAAAGATCATAAAAGTCAGTTTCTTGATGTTGGTTATGTGTATATAGATTTCAAAACTCAAAGGGGTATGCACTTTCGTATTTTGAAACATGTTTGTAGAATTGTAGTGTCAAAAGTGGATCAGTTTTGATTTAGTGATCTTGTGGATTAGTAATATTTTTTGCATAGGTTGGTAACTTAGCCAGTTAAGCTCTTTTACTGCACTCTGATGGAGAGTTCTGATTGTTCACAATACTTGAAATTTAGGTGCTTTTTGTCATGAAAATTTTGAGTGTTTGGAAAAAGTAGTTTTTATTTCGAATAATGAAAGATGATATTTGAAAATTCTTTGATTGTCCAATAGATTATCTGCAAGAATAAGCTCATAGTCGTTTAATCGAGTAGTCCTTTAGGCTATTGTTCATGAAATAGCAGAATGGAGATTCATATGTCACTTGCGTTTTCTTCGTCTGAGCAGAAGAATTGACTGTCTACTGATTTTGCATCTTGTTCACAATCAGTTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAGGTACATATTTGAATTAATGTGTGTACTGAACTTGAAAACCTGGTAAAATACAACATCCATTATCTTTATCTAGGTCTATTTACAAGTTTGTTGCATTGCTCTTTCTCATTTGCCTTGCTTTCCAAATATAGTTCACTTTATTTACTCTCTATTGTACCTTTCTTAGAGTTATTTCAAATTTTCCCAGTCTTCATCGTATTCTACATTGTATTCTAATCAGTTCATGTAACTAGGTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAGGTTTGGAAAATTCATTTTGATACAAATTGCATTTTCTGGTTATTCAGGGTGATTTCCCTTCTATATGTCAAACTTATTGAAACGAGTCTTCTGAAAAATAAATGGAAAGTTATATGGAAAAACATTTCCAGGATATTGCTTAGTTTCTCATAAGTATAAAGCTTTATATGTGAACCAATTCAACAGGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGG</genome_strand>
        <mrna_strand>TTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG.........................................................................................................................................................................................................................................GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG..........................................................................................................................................................................................GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428253" ref_strand="+" ref_description="SGN-E428253 [STM-50-A23]">
      <seq>gaaaagttcctggttgacactctttaatgtggaagatcccaggactaaagttccacaaagtaaaggcaagttcttggatgcaaatcaagctttagaagttgctagatatgatctacaatactgtgattggagagctangcaagatgtacttactataatgctccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="54449" stop="55214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54749" g_stop="54914" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E428253" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54749" e_stop="54914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTA</genome_strand>
        <mrna_strand>GAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTANGCAAGATGTACTTACTATAATGCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479342" ref_strand="+" ref_description="SGN-E479342 [cSTD-9-D23]">
      <seq>gaaaagttcctggttgacacctctttaatggtggaagatcccaggactaaagttccacaaagtaaagggcaagttcttggatgcaaatcaagctttagaagttgctagatatgatctacaatactgtgattggagagctaggcaagatgtacttactataatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="54449" stop="55209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54749" g_stop="54909" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E479342" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54749" e_stop="54909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTTCCTGGTTGACA-CTCTTTAAT-GTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAA-GGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGC</genome_strand>
        <mrna_strand>GAAAAGTTCCTGGTTGACACCTCTTTAATGGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244364" ref_strand="+" ref_description="SGN-E244364 [cLEF-3-O21]">
      <seq>aaagttcctggttgacactgtgtgatgtggaagatcccaggactaaagttccacaaagtaaaggcaagttcttggatgcaaatcaagctttagaagttgctagatatgatctacaatactgtgattggagagctaggcaagatgtacttactataatgctgctacacgaaaaggttgtggaagtattaaaccctctggcacgcgattataaatctattggaaccatgaagaaggaacttgcagaattgcaagaagaactttctcaggctcacaaccaggtacatatatcagaggcccgggtttctgctgctttagataagctagcttacatggaagaattggttaacgataggcttctgcaagagagaagcacagtataatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaagcaagcaaccacgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatggtaccgattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="54451" stop="56025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54751" g_stop="54923" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54924" i_stop="55156" i_length="233">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55157" g_stop="55261" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="278" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55262" i_stop="55447" i_length="186">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55448" g_stop="55723" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="554" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55927" g_stop="55939" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="567" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E244364" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54751" e_stop="54923"/>
          <exon e_start="55157" e_stop="55261"/>
          <exon e_start="55448" e_stop="55723"/>
          <exon e_start="55927" e_stop="55939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAGGTACATATTTGAATTAATGTGTGTACTGAACTTGAAAACCTGGTAAAATACAACATCCATTATCTTTATCTAGGTCTATTTACAAGTTTGTTGCATTGCTCTTTCTCATTTGCCTTGCTTTCCAAATATAGTTCACTTTATTTACTCTCTATTGTACCTTTCTTAGAGTTATTTCAAATTTTCCCAGTCTTCATCGTATTCTACATTGTATTCTAATCAGTTCATGTAACTAGGTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAGGTTTGGAAAATTCATTTTGATACAAATTGCATTTTCTGGTTATTCAGGGTGATTTCCCTTCTATATGTCAAACTTATTGAAACGAGTCTTCTGAAAAATAAATGGAAAGTTATATGGAAAAACATTTCCAGGATATTGCTTAGTTTCTCATAAGTATAAAGCTTTATATGTGAACCAATTCAACAGGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATT</genome_strand>
        <mrna_strand>AAAGTTCCTGGTTGACACTGTGTGATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG.........................................................................................................................................................................................................................................GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG..........................................................................................................................................................................................GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTATAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................GTACCGATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264785" ref_strand="+" ref_description="SGN-E264785 [cLEG-71-J13]">
      <seq>tttaatgtggaagatcccaggactaaagttccacaaagtaaaggcaagttcttggatgcaaatcaagctttagaagttgctagatatgatctacaatactgtgattggagagctaggcaagatgtacttactataatgctgctacacgaaaaggttgtggaagtattaaaccctctggcacgcgattataaatctattggaaccatgaagaaggaacttgcagaattgcaagaagaactttctcaggctcacaaccaggtacatatatcagaggcccgggtttctgctgctttagataagctagcttacatggaagaattggttaacgataagcttctgcgagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaaggcagcaaccacgaagaacgctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="54471" stop="55933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54771" g_stop="54923" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54924" i_stop="55156" i_length="233">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55157" g_stop="55261" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="258" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55262" i_stop="55447" i_length="186">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55448" g_stop="55633" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="444" r_length="186" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E264785" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54771" e_stop="54923"/>
          <exon e_start="55157" e_stop="55261"/>
          <exon e_start="55448" e_stop="55633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAGGTACATATTTGAATTAATGTGTGTACTGAACTTGAAAACCTGGTAAAATACAACATCCATTATCTTTATCTAGGTCTATTTACAAGTTTGTTGCATTGCTCTTTCTCATTTGCCTTGCTTTCCAAATATAGTTCACTTTATTTACTCTCTATTGTACCTTTCTTAGAGTTATTTCAAATTTTCCCAGTCTTCATCGTATTCTACATTGTATTCTAATCAGTTCATGTAACTAGGTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAGGTTTGGAAAATTCATTTTGATACAAATTGCATTTTCTGGTTATTCAGGGTGATTTCCCTTCTATATGTCAAACTTATTGAAACGAGTCTTCTGAAAAATAAATGGAAAGTTATATGGAAAAACATTTCCAGGATATTGCTTAGTTTCTCATAAGTATAAAGCTTTATATGTGAACCAATTCAACAGGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAAT</genome_strand>
        <mrna_strand>TTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG.........................................................................................................................................................................................................................................GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG..........................................................................................................................................................................................GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAAGCTTCTGCGAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGGCAGCAACCACGAAGAACGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434916" ref_strand="+" ref_description="SGN-E434916 [STM-60-P3]">
      <seq>ggtacatatatcagagactcgggtttctgctgctttagataagctagcttacatggaagagctggttaacgataggcttctgcaagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactcctaaaagcaagcaaccccgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacacgatgttaccgattgattgctttgagcaatcatgggtgatctttcgtggggctgatggnaaacctggatgtgtccggaatacatgtgcacatagagcctgcccccttgatcttggctcagtgaatgagggtcgcatccaatgcccttatcatgggatgggagtattccactgacgggaagtgtgagaaaatgccatcaacaagattactgaatgtaaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgcagaggtttgaaatcactaccgttagattttcagttgtttatcttacaactcatgtttgagtattttgccttatgactgttttcattgaaactgcagatagtcatgggaacttccggtggaacatggactacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="55147" stop="56818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55447" g_stop="55723" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55927" g_stop="56074" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="426" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130">
            <donor d_prob="0.955" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56205" g_stop="56518" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="741" r_length="315" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E434916" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55447" e_stop="55723"/>
          <exon e_start="55927" e_stop="56074"/>
          <exon e_start="56205" e_stop="56518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCA-CGGTGAGATAAATTTGAATCCTTCCATTTACAGTCCAGAGTTCATACTCGAGAGATGGACAGCTTTTAAATGGGTTTTGTAGAGGACATGGAATAGCTTACACTGAGTTTCATGTTTGTTAAATGAATTTAGGATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCAT-GGAACTTCCAGTGGAACATGGACTACTTT</genome_strand>
        <mrna_strand>GGTACATATATCAGAGACTCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAGCTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCTAAAAGCAAGCAACCCCGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACGATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCATGGGTGATCTTTCGTGGGGCTGATGGNAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCCCTTGATCTTGGCTCAGTGAATGAGGGTCGCATCCAATGCCCTTATCATGG..................................................................................................................................GATGGGAGTATTCCACTGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCAGAGGTTTGAAATCACTACCGTTAGATTTTCAGTTGTTTATCTTACAACTCATGTTTGAGTATTTTGCCTTATGACTGTTTTCATTGAAACTGCAGATAGTCATGGGAACTTCCGGTGGAACATGGACTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409484" ref_strand="+" ref_description="SGN-E409484 [PPI-14-O13]">
      <seq>ggtacatatatcagagactcgggtttctgctgctttagataagctagcttacatggaagagctggttaacgataggcttctgcaagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactcctaaaagcaagcaaccccgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacacgatgttaccgattgattgctttgagcaatcatgggtgatctttcgtggggctgatggaaaacctggatgtgtccggaatacatgtgcacatagagcctgcccccttgatcttggctcagtgaatgagggtcgcatccaatgcccttatcatggatgggagtattccactgacgggaagtgtgagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="55147" stop="56541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55447" g_stop="55723" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55927" g_stop="56074" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="425" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130">
            <donor d_prob="0.955" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56205" g_stop="56241" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="462" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E409484" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55447" e_stop="55723"/>
          <exon e_start="55927" e_stop="56074"/>
          <exon e_start="56205" e_stop="56241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACGGTGAGATAAATTTGAATCCTTCCATTTACAGTCCAGAGTTCATACTCGAGAGATGGACAGCTTTTAAATGGGTTTTGTAGAGGACATGGAATAGCTTACACTGAGTTTCATGTTTGTTAAATGAATTTAGGATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAAT</genome_strand>
        <mrna_strand>GGTACATATATCAGAGACTCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAGCTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCTAAAAGCAAGCAACCCCGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACGATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCATGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCCCTTGATCTTGGCTCAGTGAATGAGGGTCGCATCCAATGCCCTTATCATG..................................................................................................................................GATGGGAGTATTCCACTGACGGGAAGTGTGAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320301" ref_strand="+" ref_description="SGN-E320301 [cTOB-21-F12]">
      <seq>ttaacgataggcttctgcaagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaagcaagcaaccacgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatgttaccgattgattgctttgagcaatcgtgggtgatctttcgtggggctgatggaaaacctggatgtgtccggaatacatgtgcacatagagcctgccctcttgatcttggctcagtaaatgagggtcgcatccaatgcccttatcacggatgggagtattccaccgacgggaagtgtgagaaaatgccatcaacaagattactgaatgtaaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgctgagatagtcatggaacttccagtggaacatggactacttttagacaatcttttagatcttgcacacgcaactttcacacatacatcaacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="55212" stop="56872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55512" g_stop="55723" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55927" g_stop="56074" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="360" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56205" g_stop="56389" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="545" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56390" i_stop="56481" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56482" g_stop="56572" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="636" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E320301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55512" e_stop="55723"/>
          <exon e_start="55927" e_stop="56074"/>
          <exon e_start="56205" e_stop="56389"/>
          <exon e_start="56482" e_stop="56572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACGGTGAGATAAATTTGAATCCTTCCATTTACAGTCCAGAGTTCATACTCGAGAGATGGACAGCTTTTAAATGGGTTTTGTAGAGGACATGGAATAGCTTACACTGAGTTTCATGTTTGTTAAATGAATTTAGGATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTG</genome_strand>
        <mrna_strand>TTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG..................................................................................................................................GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG............................................................................................ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCAACTTTCACACATACATCAACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702337" ref_strand="+" ref_description="SGN-E702337 [FA18BG08]">
      <seq>cacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaagcaagcaaccacgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatgttaccgattgattgctttgagcaatcgtgggtgatctttcgtggggctgatggaaaacctggatgtgtccggaatacatgtgcacatagagcctgccctcttgatcttggctcagtaaatgagggtcgcatccaatgcccttatcacggatgggagtattccaccgacgggaagtgtgagaaaatgccatcaacaagattactgaatgtaaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgctgagatagtcatggaacttccagtggaacatggactacttttagacaatcttttagatcttgcacacgcacctttcacacatacatcaacttttgctaaaggatggagtgtaccaagcttggtaaagttcttgactcctgcatctggtctgcaaggatattgggatccatatccaatagatatggaatttagaccaccttgtatggttttatccaccattggcatctcaaagccaggcaaattggaaggacagagtaccaagcagtgttctacgcaccttcatcaactgcatgtttgcttacctgcatcacgacagaaaacacggttattatatagaatgtcactggattttgctcccctgctgaaacacatccccctcatgcaatacgtttggagacattttgctgagcaggttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="55240" stop="57426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55540" g_stop="55723" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55927" g_stop="56074" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="332" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56205" g_stop="56389" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="517" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56390" i_stop="56481" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56482" g_stop="56594" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="630" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56595" i_stop="56827" i_length="233">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56828" g_stop="57122" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="925" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E702337" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55540" e_stop="55723"/>
          <exon e_start="55927" e_stop="56074"/>
          <exon e_start="56205" e_stop="56389"/>
          <exon e_start="56482" e_stop="56594"/>
          <exon e_start="56828" e_stop="57122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACGGTGAGATAAATTTGAATCCTTCCATTTACAGTCCAGAGTTCATACTCGAGAGATGGACAGCTTTTAAATGGGTTTTGTAGAGGACATGGAATAGCTTACACTGAGTTTCATGTTTGTTAAATGAATTTAGGATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAGGTAGTAATGGACATGAACATATGATGGTTATTATTTAGACGTTTAGTACTATATCAATAGTAGAGTAAATTGTCTTTCTATTTGGTTTCATGTGGTTTTCCAGAAAACTTGTTTTTTCTGGTCCAAGTTATGAGTTCTAAGGAATAAGTAATGCTTTCAAGTTGTGCATTGTGTTTTGTGTAGTATATGAAGGTCTACGTACTTATAGTTTACCTTTTTTTTTTTAATTTCAGCTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATACGTTTGGAGACATTTTGCTGAGCAG</genome_strand>
        <mrna_strand>CACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG..................................................................................................................................GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG............................................................................................ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAG.........................................................................................................................................................................................................................................CTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCCTCATGCAATACGTTTGGAGACATTTTGCTGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272835" ref_strand="+" ref_description="SGN-E272835 [cLEM-25-A20]">
      <seq>aacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatgttaccgattgattgctttgagcaatcgtgggtgatctttcgtggggctgatggaaaacctggatgtgtccggaatacatgtgcacatagagcctgccctcttgatcttggctcagtaaatgagggtcgcatccaatgcccttatcacggatgggagtattccaccgacgggaagtgtgagaaaatgccatcaacaagattactgaatgtaaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgctgagatagtcatggaacttccagtggaacatggactactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="55324" stop="56819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55624" g_stop="55723" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55927" g_stop="56074" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="248" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56205" g_stop="56389" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="433" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56390" i_stop="56481" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56482" g_stop="56519" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="471" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E272835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55624" e_stop="55723"/>
          <exon e_start="55927" e_stop="56074"/>
          <exon e_start="56205" e_stop="56389"/>
          <exon e_start="56482" e_stop="56519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACGGTGAGATAAATTTGAATCCTTCCATTTACAGTCCAGAGTTCATACTCGAGAGATGGACAGCTTTTAAATGGGTTTTGTAGAGGACATGGAATAGCTTACACTGAGTTTCATGTTTGTTAAATGAATTTAGGATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTT</genome_strand>
        <mrna_strand>AACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG..................................................................................................................................GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG............................................................................................ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699697" ref_strand="+" ref_description="SGN-E699697 [FA10DG08]">
      <seq>cgttgcattctccgcagatcttaagaatgacaccatgttaccgattgattgctttgagcaatcgtgggtgatctttcgtggggctgatggaaaacctggatgtgtccggaatacatgtgcacatagagcctgccctcttgatcttggctcagtaaatgagggtcgcatccaatgcccttatcacggatgggagtattccaccgacgggaagtgtgagaaaatgccatcaacaagattactgaatgtaaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgctgagatagtcatggaacttccagtggaacatggactacttttagacaatcttttagatcttgcacacgcacctttcacacatacatcaacttttgctaaaggatggagtgtaccaagcttggtaaagttcttgactcctgcatctggtctgcaaggatattgggatccatatccaatagatatggaatttagaccaccttgtatggttttatccaccattggcatctcaaagccaggcaaattggaaggacagagtaccaagcagtgttctacgcaccttcatcaactgcatgtttgcttacctgcatcacgacagaaaacacggttattatatagaatgtcactggattttgctcccctgctgaaacacatccccttcatgcaatacgtttggagacattttgctgagcaggttttaaacgaagacttacggcttgtgcttggccagcaggatcgcatgctcaatggcgccaatatttggaatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="55388" stop="57992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55687" g_stop="55723" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55927" g_stop="56074" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="185" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56205" g_stop="56389" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="370" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56390" i_stop="56481" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56482" g_stop="56594" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="483" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56595" i_stop="56827" i_length="233">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56828" g_stop="57122" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="778" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57123" i_stop="57616" i_length="494">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57617" g_stop="57692" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="854" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E699697" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55687" e_stop="55723"/>
          <exon e_start="55927" e_stop="56074"/>
          <exon e_start="56205" e_stop="56389"/>
          <exon e_start="56482" e_stop="56594"/>
          <exon e_start="56828" e_stop="57122"/>
          <exon e_start="57617" e_stop="57692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACGGTGAGATAAATTTGAATCCTTCCATTTACAGTCCAGAGTTCATACTCGAGAGATGGACAGCTTTTAAATGGGTTTTGTAGAGGACATGGAATAGCTTACACTGAGTTTCATGTTTGTTAAATGAATTTAGGATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAGGTAGTAATGGACATGAACATATGATGGTTATTATTTAGACGTTTAGTACTATATCAATAGTAGAGTAAATTGTCTTTCTATTTGGTTTCATGTGGTTTTCCAGAAAACTTGTTTTTTCTGGTCCAAGTTATGAGTTCTAAGGAATAAGTAATGCTTTCAAGTTGTGCATTGTGTTTTGTGTAGTATATGAAGGTCTACGTACTTATAGTTTACCTTTTTTTTTTTAATTTCAGCTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATACGTTTGGAGACATTTTGCTGAGCAGGTTTGTTTCTGTCCAAAACTTTGTAAAAAATGGTGATTACATGAACATCTTATAAAAGTCTGACTTCATGAAATAACAACTGCCTGATCTATGAAAAACTGCATTTTGTTCTGGAACATCTATCTTGAAAATTTATGCATTTTGAAGTTGGAAATATGCAACGGATAGAACAAAATCAGAGCTTAAACTCCAGGATTACCATCACATGGCTCTAGAAGCTCATAGTCACAATAATTTAGATTTGCAAACTCTTTGATTTCTGGAAGTTACATAAATTTGCCTAAAATAGAACCACATGATTGTGAGCATGATCTTCTGAAATAGTAAATTTGCCAAATATCAGATAAACTTTCACCTTCTATATAAGATATTACTACATTTTTGCTTCTTCAGTAAGGATAATGCTGCAAAGAACTTCTCCTATATGAATATAAAATAAAGAGGGTACCAAAATGAATGATATGTTCTAACATTTTTCTCTTCCTTGTATACAGGTTTTAAACGAAGACTTACGGCTTGTGCTTGGCCAGCAGGATCGCATGCTCAATGGCGCCAATATTTGGAATCTGC</genome_strand>
        <mrna_strand>CGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG..................................................................................................................................GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG............................................................................................ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAG.........................................................................................................................................................................................................................................CTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATACGTTTGGAGACATTTTGCTGAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAACGAAGACTTACGGCTTGTGCTTGGCCAGCAGGATCGCATGCTCAATGGCGCCAATATTTGGAATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276100" ref_strand="+" ref_description="SGN-E276100 [cLEN-12-L1]">
      <seq>gaaaatgccatcaacaagattactgaatgtcaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgctgagatagtcatggaacttccagtggaacatggactacttttagacaatcttttagatcttgcacacgcacctttcacacatacatcaacttttgctaaaggatggagtgtaccaagcttggtaaagttcttgactcctgcatctggtctgcaaggatattgagatccatatccaatagatatggaatttagaccaccttgtatggttttatccaccattggcatctcaaagccaggcaaattggaaggacagagtaccaagcagtgttctacgcaccttcatcaactgcatgtttgcttacctgcatcacgacaganaacacggttattatatagaatgtcactggattttgctcccctgctgaaacacatccccttcatgcaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="55936" stop="57398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56236" g_stop="56389" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56390" i_stop="56481" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56482" g_stop="56594" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="267" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56595" i_stop="56827" i_length="233">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56828" g_stop="57098" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="538" r_length="271" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E276100" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56236" e_stop="56389"/>
          <exon e_start="56482" e_stop="56594"/>
          <exon e_start="56828" e_stop="57098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAGGTAGTAATGGACATGAACATATGATGGTTATTATTTAGACGTTTAGTACTATATCAATAGTAGAGTAAATTGTCTTTCTATTTGGTTTCATGTGGTTTTCCAGAAAACTTGTTTTTTCTGGTCCAAGTTATGAGTTCTAAGGAATAAGTAATGCTTTCAAGTTGTGCATTGTGTTTTGTGTAGTATATGAAGGTCTACGTACTTATAGTTTACCTTTTTTTTTTTAATTTCAGCTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATAC</genome_strand>
        <mrna_strand>GAAAATGCCATCAACAAGATTACTGAATGTCAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG............................................................................................ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAG.........................................................................................................................................................................................................................................CTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGAGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGANAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276106" ref_strand="+" ref_description="SGN-E276106 [cLEN-12-N1]">
      <seq>gaaaatgccatcaacaagattactgaatgtaaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgctgagatagtcatggaacttccagtggaacatggactacttttagacaatcttttagatcttgcacacgcacctttcacacatacatcaacttttgctaaaggatggagtgtaccaagcttggtaaagttcttgactcctgcatctggtctgcaaggatattgggatccatatccaatagatatggaatttagaccaccttgtatggttttatccaccattggcatctcaaagccaggcaaattggaaggacagagtaccaagcagtgttctacgcaccttcatcaactgcatgtttgcttacctgcatcacgacagaaaacacggttattatatagaatgtcactggattttgctcccctgctgaaacacatccccttcatgcaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="55936" stop="57398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56236" g_stop="56389" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56390" i_stop="56481" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56482" g_stop="56594" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="267" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56595" i_stop="56827" i_length="233">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56828" g_stop="57098" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="538" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E276106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56236" e_stop="56389"/>
          <exon e_start="56482" e_stop="56594"/>
          <exon e_start="56828" e_stop="57098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAGGTAGTAATGGACATGAACATATGATGGTTATTATTTAGACGTTTAGTACTATATCAATAGTAGAGTAAATTGTCTTTCTATTTGGTTTCATGTGGTTTTCCAGAAAACTTGTTTTTTCTGGTCCAAGTTATGAGTTCTAAGGAATAAGTAATGCTTTCAAGTTGTGCATTGTGTTTTGTGTAGTATATGAAGGTCTACGTACTTATAGTTTACCTTTTTTTTTTTAATTTCAGCTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATAC</genome_strand>
        <mrna_strand>GAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG............................................................................................ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAG.........................................................................................................................................................................................................................................CTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612124" ref_strand="-" ref_description="SGN-E612124 [61883]">
      <seq>tttgctaaaggatggagtgtaccaaagctttggtaaaagttcttgattccctgcaatctggtctgcaaaggatattgggatccatatccaatagatatggaatttagaccaccttgtaatggtttttatccaccattggcatctcaaagccaggcaaattggagggacagagcaccaagcagtgttctacgcaccttcatcaactgcatgtttgcttacctgcatcacgacagaagacacggttattatatagaatgtcactggattttgctcccctgctgaaacacatccccttcatgcaatacgtttggagacattttggctgagcaggttttgaatgaagacttacggcttgttcttgcccagcaggatcgcatgctcaatggcgccaatatttggaacctgccagtgtcttatgataagctaggtgtaaggtatagaatatggagagatgctgtagatagtggagaaaaggaactacctttcagcaaataaatattgttccatcaagtaccgggttttacttttcaagatagactttgatctcttcattgtcagctcacggcaaaattcagttcagttgcttagaatctctcacttgctgcagttttccatattttttcttgtgaggagatagatacttacaccccttctgtaaatatagctgtacacaaattttttgtaggttcatgtacagtttgagcaatcttacattccttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="56269" stop="58301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56569" g_stop="56594" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56595" i_stop="56827" i_length="233">
            <donor d_prob="0.559" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56828" g_stop="57122" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="330" r_length="303" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57123" i_stop="57616" i_length="494">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57617" g_stop="58001" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="721" r_length="391" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E612124" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612124" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56569" e_stop="56594"/>
          <exon e_start="56828" e_stop="57122"/>
          <exon e_start="57617" e_stop="58001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTAAAGGATGGAGTGTACC-AAGGTAGTAATGGACATGAACATATGATGGTTATTATTTAGACGTTTAGTACTATATCAATAGTAGAGTAAATTGTCTTTCTATTTGGTTTCATGTGGTTTTCCAGAAAACTTGTTTTTTCTGGTCCAAGTTATGAGTTCTAAGGAATAAGTAATGCTTTCAAGTTGTGCATTGTGTTTTGTGTAGTATATGAAGGTCTACGTACTTATAGTTTACCTTTTTTTTTTTAATTTCAGC-TTGGTAA-AGTTCTTGACT-CCTGC-ATCTGGTCTGC-AAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGT-ATGG-TTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATACGTTTGGAGACATTTT-GCTGAGCAGGTTTGTTTCTGTCCAAAACTTTGTAAAAAATGGTGATTACATGAACATCTTATAAAAGTCTGACTTCATGAAATAACAACTGCCTGATCTATGAAAAACTGCATTTTGTTCTGGAACATCTATCTTGAAAATTTATGCATTTTGAAGTTGGAAATATGCAACGGATAGAACAAAATCAGAGCTTAAACTCCAGGATTACCATCACATGGCTCTAGAAGCTCATAGTCACAATAATTTAGATTTGCAAACTCTTTGATTTCTGGAAGTTACATAAATTTGCCTAAAATAGAACCACATGATTGTGAGCATGATCTTCTGAAATAGTAAATTTGCCAAATATCAGATAAACTTTCACCTTCTATATAAGATATTACTACATTTTTGCTTCTTCAGTAAGGATAATGCTGCAAAGAACTTCTCCTATATGAATATAAAATAAAGAGGGTACCAAAATGAATGATATGTTCTAACATTTTTCTCTTCCTTGTATACAGGTTTTAAACGAAGACTTACGGCTTGTGCTTGGCCAGCAGGATCGCATGCTCAATGGCGCCAATATTTGGAATCTGCCAGTGTCTTACGATAAGCTAGGTGTGAGGTATAGAATATGGAGAGACGCTGTAGATAGTGGAGAAAAGGAACTACCTTTCAGCAAATAAATATCGTTCTATCAAGAACTGGGTTCTACTTTTCAAGAT-GACTTTGATCTCTTCATAGTCAGCCCACGCCAAAATTCAGTCCAGCTGCTGAGAAGCTCTCACTTACTGCAGTTTTCCATATTTTTTCTTGTGA-G-G--AGATACTT-CAACTCTACTGTAAATATAGCTGTACACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAACCTTACATTCCTCAC</genome_strand>
        <mrna_strand>TTTGCTAAAGGATGGAGTGTACCAAAG.........................................................................................................................................................................................................................................CTTTGGTAAAAGTTCTTGATTCCCTGCAATCTGGTCTGCAAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTAATGGTTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAGGGACAGAGCACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAGACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATACGTTTGGAGACATTTTGGCTGAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAATGAAGACTTACGGCTTGTTCTTGCCCAGCAGGATCGCATGCTCAATGGCGCCAATATTTGGAACCTGCCAGTGTCTTATGATAAGCTAGGTGTAAGGTATAGAATATGGAGAGATGCTGTAGATAGTGGAGAAAAGGAACTACCTTTCAGCAAATAAATATTGTTCCATCAAGTACCGGGTTTTACTTTTCAAGATAGACTTTGATCTCTTCATTGTCAGCTCACGGCAAAATTCAGTTCAGTTGCTTAGAATCTCTCACTTGCTGCAGTTTTCCATATTTTTTCTTGTGAGGAGATAGATACTTACACCCCTTCTGTAAATATAGCTGTACACAAATTTTTTGTAGGTTCATGTACAGTTTGAGCAATCTTACATTCCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733873" ref_strand="+" ref_description="SGN-E733873 [LB11AG02]">
      <seq>cggtattttgctcccctgctgaaacacatccccttcatgcaatacgtttggagacattttgctgagcaggttttaaacgaagacttacggcttgtgcttggccagcaggatcgcatgctcaatggcgccaatatttggaatctgccagtgtcttacgataagctaggtgtgaggtatagaatatggagagacgctgtagatagtggagaaaaggaactacctttcagcaaataaatatcgttctatcaagaactgggttctacttttcaagatgactttgatctcttcatagtcagcccacgccaaaattcagtccagctgctgagaagctctcacttactgcagttttccatattttttcttgtgaggagatacttcaactctactgtaaatatagctatacaatttttttgtaggttcgtgtacagtttgagcaaccttacattcctcaccaacaatctatcctgtcctgattgccacttgaaaaaatctcataggttctttgtaagtgtctagagtcccccagcaatgtcgttccaccttgttatagcataatttctgatctcagattgcaagtattctttttgcctaacaataagtcagagatgttttgatctttggtagcagtttgagctcagttgaatcagtatgatagtattgaaatattatccttgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="56756" stop="58526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57054" g_stop="57122" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57123" i_stop="57616" i_length="494">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57617" g_stop="58226" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="677" r_length="608" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E733873" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57054" e_stop="57122"/>
          <exon e_start="57617" e_stop="58226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATACGTTTGGAGACATTTTGCTGAGCAGGTTTGTTTCTGTCCAAAACTTTGTAAAAAATGGTGATTACATGAACATCTTATAAAAGTCTGACTTCATGAAATAACAACTGCCTGATCTATGAAAAACTGCATTTTGTTCTGGAACATCTATCTTGAAAATTTATGCATTTTGAAGTTGGAAATATGCAACGGATAGAACAAAATCAGAGCTTAAACTCCAGGATTACCATCACATGGCTCTAGAAGCTCATAGTCACAATAATTTAGATTTGCAAACTCTTTGATTTCTGGAAGTTACATAAATTTGCCTAAAATAGAACCACATGATTGTGAGCATGATCTTCTGAAATAGTAAATTTGCCAAATATCAGATAAACTTTCACCTTCTATATAAGATATTACTACATTTTTGCTTCTTCAGTAAGGATAATGCTGCAAAGAACTTCTCCTATATGAATATAAAATAAAGAGGGTACCAAAATGAATGATATGTTCTAACATTTTTCTCTTCCTTGTATACAGGTTTTAAACGAAGACTTACGGCTTGTGCTTGGCCAGCAGGATCGCATGCTCAATGGCGCCAATATTTGGAATCTGCCAGTGTCTTACGATAAGCTAGGTGTGAGGTATAGAATATGGAGAGACGCTGTAGATAGTGGAGAAAAGGAACTACCTTTCAGCAAATAAATATCGTTCTATCAAGAACTGGGTTCTACTTTTCAAGATGACTTTGATCTCTTCATAGTCAGCCCACGCCAAAATTCAGTCCAGCTGCTGAGAAGCTCTCACTTACTGCAGTTTTCCATATTTTTTCTTGTGAGGAGATACTTCAACTCTACTGTAAATATAGCTGTACACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAACCTTACATTCCTCACCAACAATCTATCCTGTCCTGATTGCCACTTGAAAAAATCTCATAGGTTCTTTGTAAGTGTCTAGAGTCCCCCAGCAATGTCGTTCCACCTTGTTATAGCATAATTTCTGATCTCAGATTGCAAGTATTCTTTTTGCCTAACAATAAGTCAGAGATGTTTTGATCTTTGGTAGCAGTTTGAGCTCAGTTGAATCAGTATGATAGTATTGAAATATTATCCTTGTAG</genome_strand>
        <mrna_strand>CGGTATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATACGTTTGGAGACATTTTGCTGAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAACGAAGACTTACGGCTTGTGCTTGGCCAGCAGGATCGCATGCTCAATGGCGCCAATATTTGGAATCTGCCAGTGTCTTACGATAAGCTAGGTGTGAGGTATAGAATATGGAGAGACGCTGTAGATAGTGGAGAAAAGGAACTACCTTTCAGCAAATAAATATCGTTCTATCAAGAACTGGGTTCTACTTTTCAAGATGACTTTGATCTCTTCATAGTCAGCCCACGCCAAAATTCAGTCCAGCTGCTGAGAAGCTCTCACTTACTGCAGTTTTCCATATTTTTTCTTGTGAGGAGATACTTCAACTCTACTGTAAATATAGC--TATACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAACCTTACATTCCTCACCAACAATCTATCCTGTCCTGATTGCCACTTGAAAAAATCTCATAGGTTCTTTGTAAGTGTCTAGAGTCCCCCAGCAATGTCGTTCCACCTTGTTATAGCATAATTTCTGATCTCAGATTGCAAGTATTCTTTTTGCCTAACAATAAGTCAGAGATGTTTTGATCTTTGGTAGCAGTTTGAGCTCAGTTGAATCAGTATGATAGTATTGAAATATTATCCTTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734629" ref_strand="+" ref_description="SGN-E734629 [LB13AG01]">
      <seq>tggattttgctcccctgctgaaacacatccccttcatgcaatacgtttggagacattttgctgagcaggttttaaacgaagacttacggcttgtgcttggccagcaggatcgcatgctcaatggcgccaatatttggaatctgccagtgtcttacgataagctaggtgtgaggtatagaatatggagagacgctgtagatagtggagaaaaggaactacctttcagcaaataaatatcgttctatcaagaactgggttctacttttcaagatgactttgatctcttcatagtcagcccacgccaaaattcagtccagctgctgagaagctctcacttactgcagttttccatattttttcttgtgaggagatacttcaactctactgtaaatatagctatacaatttttttgtaggttcgtgtacagtttgagcaaccttacattcctcaccaacaatctatcctgtcctgattgccacttgaaaaaatctcataggttctttgtaagtgtctagagtcccccagcaatgtcgttccaccttgttatagcataatttctgatctcagattgcaagtattctttttgcctaacaataagtcagagatgttttgatctttggtagcagtttgagctcagttgaatcagtatgatagtattgaaatattatccttgtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="56755" stop="58527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57055" g_stop="57122" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57123" i_stop="57616" i_length="494">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57617" g_stop="58227" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="677" r_length="609" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E734629" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57055" e_stop="57122"/>
          <exon e_start="57617" e_stop="58227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATACGTTTGGAGACATTTTGCTGAGCAGGTTTGTTTCTGTCCAAAACTTTGTAAAAAATGGTGATTACATGAACATCTTATAAAAGTCTGACTTCATGAAATAACAACTGCCTGATCTATGAAAAACTGCATTTTGTTCTGGAACATCTATCTTGAAAATTTATGCATTTTGAAGTTGGAAATATGCAACGGATAGAACAAAATCAGAGCTTAAACTCCAGGATTACCATCACATGGCTCTAGAAGCTCATAGTCACAATAATTTAGATTTGCAAACTCTTTGATTTCTGGAAGTTACATAAATTTGCCTAAAATAGAACCACATGATTGTGAGCATGATCTTCTGAAATAGTAAATTTGCCAAATATCAGATAAACTTTCACCTTCTATATAAGATATTACTACATTTTTGCTTCTTCAGTAAGGATAATGCTGCAAAGAACTTCTCCTATATGAATATAAAATAAAGAGGGTACCAAAATGAATGATATGTTCTAACATTTTTCTCTTCCTTGTATACAGGTTTTAAACGAAGACTTACGGCTTGTGCTTGGCCAGCAGGATCGCATGCTCAATGGCGCCAATATTTGGAATCTGCCAGTGTCTTACGATAAGCTAGGTGTGAGGTATAGAATATGGAGAGACGCTGTAGATAGTGGAGAAAAGGAACTACCTTTCAGCAAATAAATATCGTTCTATCAAGAACTGGGTTCTACTTTTCAAGATGACTTTGATCTCTTCATAGTCAGCCCACGCCAAAATTCAGTCCAGCTGCTGAGAAGCTCTCACTTACTGCAGTTTTCCATATTTTTTCTTGTGAGGAGATACTTCAACTCTACTGTAAATATAGCTGTACACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAACCTTACATTCCTCACCAACAATCTATCCTGTCCTGATTGCCACTTGAAAAAATCTCATAGGTTCTTTGTAAGTGTCTAGAGTCCCCCAGCAATGTCGTTCCACCTTGTTATAGCATAATTTCTGATCTCAGATTGCAAGTATTCTTTTTGCCTAACAATAAGTCAGAGATGTTTTGATCTTTGGTAGCAGTTTGAGCTCAGTTGAATCAGTATGATAGTATTGAAATATTATCCTTGTAGT</genome_strand>
        <mrna_strand>TGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATACGTTTGGAGACATTTTGCTGAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAACGAAGACTTACGGCTTGTGCTTGGCCAGCAGGATCGCATGCTCAATGGCGCCAATATTTGGAATCTGCCAGTGTCTTACGATAAGCTAGGTGTGAGGTATAGAATATGGAGAGACGCTGTAGATAGTGGAGAAAAGGAACTACCTTTCAGCAAATAAATATCGTTCTATCAAGAACTGGGTTCTACTTTTCAAGATGACTTTGATCTCTTCATAGTCAGCCCACGCCAAAATTCAGTCCAGCTGCTGAGAAGCTCTCACTTACTGCAGTTTTCCATATTTTTTCTTGTGAGGAGATACTTCAACTCTACTGTAAATATAGC--TATACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAACCTTACATTCCTCACCAACAATCTATCCTGTCCTGATTGCCACTTGAAAAAATCTCATAGGTTCTTTGTAAGTGTCTAGAGTCCCCCAGCAATGTCGTTCCACCTTGTTATAGCATAATTTCTGATCTCAGATTGCAAGTATTCTTTTTGCCTAACAATAAGTCAGAGATGTTTTGATCTTTGGTAGCAGTTTGAGCTCAGTTGAATCAGTATGATAGTATTGAAATATTATCCTTGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745204" ref_strand="+" ref_description="SGN-E745204 [GI|47105842]">
      <seq>gagcagagtcaagggggaagaagaaggaggatgacagacagcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcacagcatctacttacaaaagatctgacccttttaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcgattgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgcttcgtgttactacaactggaaccaatcggagacctcatatatctcctgtatatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgtttacaaggtcgatttgtcattgatgttgagttccttgacctgaagatctacaccccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatactgatgttaccattaatacggctgatggatcagtgcaagctcacagagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagagtcctctataatcgacatagaagacatgtcaacagaatcatgcacagcgcttcttagttacttgtatggaaccataaaacaagaggatttctggaagcaccgattggcattactgggtgcggcaaacaagtatgatattgtagatttgaagaatgcttgtgaggaaagtctcctagaagacatcaactcgggtaatgtcctcgaaagactgcaagaggcctggctttaccagctaaataaattgaaaaaaggttgcttgatgtatttgttcgattttggcaagatttatgatgttagggaggaaattaacaacttcttcagacaggcagatagagatctgatgctagagatgtttcaagaagtgctcacagtttggaagcctgcctaacatgatgaggtttttgccatagttgtatatgggataactctatctattaattactaagctgtagctttctaagaaagccatgttgtatctatatgctaatcctatgtaaattttgttgaacttattaagtgtattatctggtataaatttatataaatggttaatgttctgtttgccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61987" stop="16372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61688" g_stop="61546" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="295" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="411" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="58687" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="1195" r_length="784" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58686" i_stop="57609" i_length="1078">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57608" g_stop="57594" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1196" r_stop="1210" r_length="15" r_score="0.667"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57593" i_stop="57131" i_length="463">
            <donor d_prob="0.729" d_score="0.00"/>
            <acceptor a_prob="0.764" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57130" g_stop="57125" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1211" r_stop="1216" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E745204" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1216</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61688" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="58687"/>
          <exon e_start="57608" e_stop="57594"/>
          <exon e_start="57130" e_stop="57125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAGAGTCAAGGGGGAAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTACTGGGTGCGGCAAACAAGTATGATATTGTAGATTTGAAGAATGCTTGTGAGGAAAGTCTCCTAGAAGACATCAACTCGGGTAATGTCCTCGAAAGACTGCAAGAGGCCTGGCTTTACCAGCTAAATAAATTGAAAAAAGGTTGCTTGATGTATTTGTTCGATTTTGGCAAGATTTATGATGTTAGGGAGGAAATTAACAACTTCTTCAGACAGGCAGATAGAGATCTGATGCTAGAGATGTTTCAAGAAGTGCTCACAGTTTGGAAGCCTGCCTAACATGATGAGGTTTTTGCCACAGTTGTATATGGGATAACTCTATCTATTAATTACTAAGCTGTAGCTTTCTAAGAAAGCCATGTTGTATCTATATGCTAATCCTATGTAAATTTTGTTGAACTTATTAAGTGTATTATCTGGTATAAATTTATATAAATGGTTAATGTTCTGTTTGCAAGCACCTTGGATTTGGATTTCTCTGTTGTTTGCCAGCTGAACCCTTGGAAAACTGGTAGAAACCATCCAAGCCAATATTCTTAGTAGAAACTAAAAATGGGATTTAGTAGTGTATTTTTGTATTTGCAGAGTACGTGGCGTTTCACTGATTATGTTGTTGGTTTCATTAAATTAATTTTTTCCTCGATAATGTTATATTACATAAGAAATAATTTTTCACAAGACTCAGCAAGGGTACTACGCCATATGTTGTTTGGGTCATCATCTACACTATAATGAGCATTTGCATATTGTCCAGAAGTACACGATTCTTGGATCTGCTGCTACTGTGTTTAAAGGGTCATCTTGCATAACTTTGAGCTCAGTTTTCCTAGCCAAGACTCAGAAATGAAAACATGGATTGTTTCATCAAGTTTTGTCTCTTGTTCAGCATAGGAACATCGACCACAATAATATACTTACTACAAGGATAATATTTCAATACTATCATACTGATTCAACTGAGCTCAAACTGCTACCAAAGATCAAAACATCTCTGACTTATTGTTAGGCAAAAAGAATACTTGCAATCTGAGATCAGAAATTATGCTATAACAAGGTGGAACGACATTGCTGGGGGACTCTAGACACTTACAAAGAACCTATGAGATTTTTTCAAGTGGCAATCAGGACAGGATAGATTGTTGGTGAGGAATGTAAGGTTGCTCAAACTGTACACGAACCTACAAAAAAATTGTGTACAGCTATATTTACAGTAGAGTTGAAGTATCTCCTCACAAGAAAAAATATGGAAAACTGCAGTAAGTGAGAGCTTCTCAGCAGCTGGACTGAATTTTGGCGTGGGCTGACTATGAAGAGATCAAAGTCATCTTGAAAAGTAGAACCCAGTTCTTGATAGAACGATATTTATTTGCTGAAAGGTAGTTCCTTTTCTCCACTATCTACAGCGTCTCTCCATATTCTATACCTCACACCTAGCTTATCGTAAGACACTGGCAGATTCCAAATATTGGCGCCATTGAGCATGCGATCCTGCTGGCCAAGCACAAGCCGTAAGTCTTCGTTTAAAACCTGTATACAAGGAAGAGAAAAATGTTAGAACATATCATTCATTTTGGTACCCTCTTTATTTTATATTCATATAGGAGAAGTTCTTTGCAGCATTATCCTTACTGAAGAAGCAAAAATGTAGTAATATCTTATATAGAAGGTGAAAGTTTATCTGATATTTGGCAAATTTACTATTTCAGAAGATCATGCTCACAATCATGTGGTTCTATTTTAGGCAAATTTATGTAACTTCCAGAAATCAAAGAGTTTGCAAATCTAAATTATTGTGACTATGAGCTTCTAGAGCCATGTGATGGTAATCCTGGAGTTTAAGCTCTGATTTTGTTCTATCCGTTGCATATTTCCAACTTCAAAATGCATAAATTTTCAAGATAGATGTTCCAGAACAAAATGCAGTTTTTCATAGATCAGGCAGTTGTTATTTCATGAAGTCAGACTTTTATAAGATGTTCATGTAATCACCATTTTTTACAAAGTTTTGGACAGAAACAA</genome_strand>
        <mrna_strand>GAGCAGAGTCAAGGGGGAAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTACTGGGTGCGGCAAACAAGTATGATATTGTAGATTTGAAGAATGCTTGTGAGGAAAGTCTCCTAGAAGACATCAACTCGGGTAATGTCCTCGAAAGACTGCAAGAGGCCTGGCTTTACCAGCTAAATAAATTGAAAAAAGGTTGCTTGATGTATTTGTTCGATTTTGGCAAGATTTATGATGTTAGGGAGGAAATTAACAACTTCTTCAGACAGGCAGATAGAGATCTGATGCTAGAGATGTTTCAAGAAGTGCTCACAGTTTGGAAGCCTGCCTAACATGATGAGGTTTTTGCCATAGTTGTATATGGGATAACTCTATCTATTAATTACTAAGCTGTAGCTTTCTAAGAAAGCCATGTTGTATCTATATGCTAATCCTATGTAAATTTTGTTGAACTTATTAAGTGTATTATCTGGTATAAATTTATATAAATGGTTAATGTTCTGTTTGCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434917" ref_strand="-" ref_description="SGN-E434917 [STM-60-P3]">
      <seq>gcaggatcgcatgctcaatggcgccaatatttggaacctgccagtgtcttatgataagctaggtgtgaggtatagaatatggagagatgctgtagatagtggagaaaaggaactacctttcagcaaataaatattgctccatcaagtaccgggttttacttttcaagatgactttgatctcttcattgtcagctcacagtaaaattcagtccagttgttgagaagctctctcacttactgcagttttccatattttttcttgtgaggagatacttacaccccttctgtaaatatagctgtacacaatttttttgtaggttcgtgtacagtttgagcaatcttacattcctcaccaacaattctatcctgtcctgattggcacttggaaaatctcataggttctttgtaagtgtctagagtcccagcaatgtcgttccaccttgtcatagaataatttctgatctcagaatgcaattatgagtattcttttgccaaaaaaagaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="57352" stop="58428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57652" g_stop="58124" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="511"/>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E434917" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434917" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57652" e_stop="58124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGATCGCATGCTCAATGGCGCCAATATTTGGAATCTGCCAGTGTCTTACGATAAGCTAGGTGTGAGGTATAGAATATGGAGAGACGCTGTAGATAGTGGAGAAAAGGAACTACCTTTCAGCAAATAAATATCGTTCTATCAAGAACTGGGTTCTACTTTTCAAGATGACTTTGATCTCTTCATAGTCAGCCCACGCCAAAATTCAGTCCAGCTGCTGAGAAG--CTCTCACTTACTGCAGTTTTCCATATTTTTTCTTGTGAGGAGATACTT-CAACTCTACTGTAAATATAGCTGTACACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAACCTTACATTCCTCACCAACAA-TCTATCCTGTCCTGATTGCCACTTGAAAAAATCTCATAGGTTCTTTGTAAGTGTCTAGAGTCCCCCAGCAATGTCGTTCCACCTTGTTATAGCATAATTTCTGATCTCAGATTGCAA</genome_strand>
        <mrna_strand>GCAGGATCGCATGCTCAATGGCGCCAATATTTGGAACCTGCCAGTGTCTTATGATAAGCTAGGTGTGAGGTATAGAATATGGAGAGATGCTGTAGATAGTGGAGAAAAGGAACTACCTTTCAGCAAATAAATATTGCTCCATCAAGTACCGGGTTTTACTTTTCAAGATGACTTTGATCTCTTCATTGTCAGCTCACAGTAAAATTCAGTCCAGTTGTTGAGAAGCTCTCTCACTTACTGCAGTTTTCCATATTTTTTCTTGTGAGGAGATACTTACACCCCTTCTGTAAATATAGCTGTACACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAATCTTACATTCCTCACCAACAATTCTATCCTGTCCTGATTGGCACTTG-GAAAATCTCATAGGTTCTTTGTAAGTGTCTAGAGT--CCCAGCAATGTCGTTCCACCTTGTCATAGAATAATTTCTGATCTCAGAATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548820" ref_strand="-" ref_description="SGN-E548820 [TUS-64-L13](-)">
      <seq>ttcttttttttttttttttttttttttttttttttttttgcaaacagaacattaaccatttatataaatttataccagataatacacttaataagttcaacaaaatttacataggattagcatatagatacaacatggctttcttagaaagctacagcttagtaattaatagatagagttatcccatatacaactggggcaaaaacctcatcatgttaggcaggcttccaaactgggagcacttcttgaaacatctctagcatcagatctctatctgcctgtctgaaaaaattgttaatttcctccctaacatcataaatcttgccaaaatcgaacaaatacatcaagcaaccttttttcaatttatttagctgggaaagccaggcctcttgcagtctttcgaggacattacccgagttgatgtcttctaggagactttcctcacaagcattcttcaaatctacaatatcatacttgtttgccgcacccagtaatgccaatcggggcttccagaaatcctcttgttttatgggtccatacaagtaactaaaaagcgctgtgcatgattctgttgacatgtcttctatgtcgattatagaggactctttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="16372" stop="59561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57885" g_stop="57910" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.615"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57911" i_stop="58046" i_length="136">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.562" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58047" g_stop="58053" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="33" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58054" i_stop="58682" i_length="629">
            <donor d_prob="0.659" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58683" g_stop="59261" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="612" r_length="579" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E548820" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548820" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57885" e_stop="57910"/>
          <exon e_start="58047" e_stop="58053"/>
          <exon e_start="58683" e_stop="59261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCAGTTTTCCATATTTTTTCTTGTGAGGAGATACTTCAACTCTACTGTAAATATAGCTGTACACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAACCTTACATTCCTCACCAACAATCTATCCTGTCCTGATTGCCACTTGAAAAAATCTCATAGGTTCTTTGTAAGTGTCTAGAGTCCCCCAGCAATGTCGTTCCACCTTGTTATAGCATAATTTCTGATCTCAGATTGCAAGTATTCTTTTTGCCTAACAATAAGTCAGAGATGTTTTGATCTTTGGTAGCAGTTTGAGCTCAGTTGAATCAGTATGATAGTATTGAAATATTATCCTTGTAGTAAGTATATTATTGTGGTCGATGTTCCTATGCTGAACAAGAGACAAAACTTGATGAAACAATCCATGTTTTCATTTCTGAGTCTTGGCTAGGAAAACTGAGCTCAAAGTTATGCAAGATGACCCTTTAAACACAGTAGCAGCAGATCCAAGAATCGTGTACTTCTGGACAATATGCAAATGCTCATTATAGTGTAGATGATGACCCAAACAACATATGGCGTAGTACCCTTGCTGAGTCTTGTGAAAAATTATTTCTTATGTAATATAACATTATCGAGGAAAAAATTAATTTAATGAAACCAACAACATAATCAGTGAAACGCCACGTACTCTGCAAATACAAAAATACACTACTAAATCCCATTTTTAGTTTCTACTAAGAATATTGGCTTGGATGGTTTCTACCAGTTTTCCAAGGGTTCAGCTGGCAAACAACAGAGAAATCCAAATCCAAGGTGCTTGCAAACAGAACATTAACCATTTATATAAATTTATACCAGATAATACACTTAATAAGTTCAACAAAATTTACATAGGATTAGCATATAGATACAACATGGCTTTCTTAGAAAGCTACAGCTTAGTAATTAATAGATAGAGTTATCCCATATACAACTGTGGCAAAAACCTCATCATGTTAGGCAGGCTTCCAAACTGTGAGCACTTCTTGAAACATCTCTAGCATCAGATCTCTATCTGCCTGTCTGAAGAAGTTGTTAATTTCCTCCCTAACATCATAAATCTTGCCAAAATCGAACAAATACATCAAGCAACCTTTTTTCAATTTATTTAGCTGGTAAAGCCAGGCCTCTTGCAGTCTTTCGAGGACATTACCCGAGTTGATGTCTTCTAGGAGACTTTCCTCACAAGCATTCTTCAAATCTACAATATCATACTTGTTTGCCGCACCCAGTAATGCCAATCGGTGCTTCCAGAAATCCTCTTGTTTTATGGTTCCATACAAGTAACTAAGAAGCGCTGTGCATGATTCTGTTGACATGTCTTCTATGTCGATTATAGAGGACTCTTTCTCC</genome_strand>
        <mrna_strand>TTCTTTTTTTTTTTTTTTTTTTTTTT........................................................................................................................................TTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGCAAACAGAACATTAACCATTTATATAAATTTATACCAGATAATACACTTAATAAGTTCAACAAAATTTACATAGGATTAGCATATAGATACAACATGGCTTTCTTAGAAAGCTACAGCTTAGTAATTAATAGATAGAGTTATCCCATATACAACTGGGGCAAAAACCTCATCATGTTAGGCAGGCTTCCAAACTGGGAGCACTTCTTGAAACATCTCTAGCATCAGATCTCTATCTGCCTGTCTGAAAAAATTGTTAATTTCCTCCCTAACATCATAAATCTTGCCAAAATCGAACAAATACATCAAGCAACCTTTTTTCAATTTATTTAGCTGGGAAAGCCAGGCCTCTTGCAGTCTTTCGAGGACATTACCCGAGTTGATGTCTTCTAGGAGACTTTCCTCACAAGCATTCTTCAAATCTACAATATCATACTTGTTTGCCGCACCCAGTAATGCCAATCGGGGCTTCCAGAAATCCTCTTGTTTTATGGGTCCATACAAGTAACTAAAAAGCGCTGTGCATGATTCTGTTGACATGTCTTCTATGTCGATTATAGAGGACTCTTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411507" ref_strand="+" ref_description="SGN-E411507 [STM-14-F6]">
      <seq>tttttttttttttttttttttttttttgcttgcaaacagaacattaaccatttatataacttataccagattacacccttaataagttcaacaaaatttacacaggataagcatatagatacaacatggctttcttagaaagctacagcttagaaattaatagatagagttattccatatacaactatggcaaaaacctcatcatggtagggaggcttccaaactgggagcacttcttgaaacatctctagcatcagatctctatctggctggctgaagaaattggtaatttcctccccaacatcataaatcttggccaaatcgaacaaatacatccagcaaccctttttccatttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="16369" stop="59318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57893" g_stop="57910" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.722"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57911" i_stop="58046" i_length="136">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.562" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58047" g_stop="58053" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="25" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58054" i_stop="58682" i_length="629">
            <donor d_prob="0.659" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58683" g_stop="59018" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="360" r_length="335" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E411507" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57893" e_stop="57910"/>
          <exon e_start="58047" e_stop="58053"/>
          <exon e_start="58683" e_stop="59018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCATATTTTTTCTTGTGAGGAGATACTTCAACTCTACTGTAAATATAGCTGTACACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAACCTTACATTCCTCACCAACAATCTATCCTGTCCTGATTGCCACTTGAAAAAATCTCATAGGTTCTTTGTAAGTGTCTAGAGTCCCCCAGCAATGTCGTTCCACCTTGTTATAGCATAATTTCTGATCTCAGATTGCAAGTATTCTTTTTGCCTAACAATAAGTCAGAGATGTTTTGATCTTTGGTAGCAGTTTGAGCTCAGTTGAATCAGTATGATAGTATTGAAATATTATCCTTGTAGTAAGTATATTATTGTGGTCGATGTTCCTATGCTGAACAAGAGACAAAACTTGATGAAACAATCCATGTTTTCATTTCTGAGTCTTGGCTAGGAAAACTGAGCTCAAAGTTATGCAAGATGACCCTTTAAACACAGTAGCAGCAGATCCAAGAATCGTGTACTTCTGGACAATATGCAAATGCTCATTATAGTGTAGATGATGACCCAAACAACATATGGCGTAGTACCCTTGCTGAGTCTTGTGAAAAATTATTTCTTATGTAATATAACATTATCGAGGAAAAAATTAATTTAATGAAACCAACAACATAATCAGTGAAACGCCACGTACTCTGCAAATACAAAAATACACTACTAAATCCCATTTTTAGTTTCTACTAAGAATATTGGCTTGGATGGTTTCTACCAGTTTTCCAAGGGTTCAGCTGGCAAACAACAGAGAAATCCAAATCCAAGGTGCTTGCAAACAGAACATTAACCATTTATATAAATTTATACCAGATAATACACTTAATAAGTTCAACAAAATTTACATAGGATTAGCATATAGATACAACATGGCTTTCTTAGAAAGCTACAGCTTAGTAATTAATAGATAGAGTTATCCCATATACAACTGTGGCAAAAACCTCATCATGTTAGGCAGGCTTCCAAACTGTGAGCACTTCTTGAAACATCTCTAGCATCAGATCTCTATCTGCCTGTCTGAAGAAGTTGTTAATTTCCTCCCTAACATCATAAATCTTGCCAAAATCGAACAAATACATCAAGCAACCTTTTTTCAATTTATTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTT........................................................................................................................................TTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTGCAAACAGAACATTAACCATTTATAT-AACTTATACCAGATTACACCCTTAATAAGTTCAACAAAATTTACACAGGATAAGCATATAGATACAACATGGCTTTCTTAGAAAGCTACAGCTTAGAAATTAATAGATAGAGTTATTCCATATACAACTATGGCAAAAACCTCATCATGGTAGGGAGGCTTCCAAACTGGGAGCACTTCTTGAAACATCTCTAGCATCAGATCTCTATCTGGCTGGCTGAAGAAATTGGTAATTTCCTCCCCAACATCATAAATCTTGGCCAAATCGAACAAATACATCCAGCAACCCTTTTTCCATTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543085" ref_strand="+" ref_description="SGN-E543085 [TUS-64-L13]">
      <seq>cagacagcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcacagcatctacttacaaaagatctgacccttttaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcgattgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgcttcgtgttactacaactggaaccaatcggagacctcatatatctcctgtatatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgtttacaaggtcgatttgtcattgatgttgagttccttgacctgaagatctacaccccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatactgatgttaccattaatacggctgatggatcagtgcaagctcacagagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagagtcctctataatcgacatagaagacatgtcaacagaatcatgcacagcgcttcttagttacttgtatggaaccataaaacaagaggatttctggaaacaccgattggcattactgggtgcngcaaacaagtatgatattgtagatttgaagaatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61954" stop="58795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61654" g_stop="61546" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="261" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="377" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59095" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="753" r_length="376" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E543085" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61654" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTACTGGGTGCGGCAAACAAGTATGATATTGTAGATTTGAAGAATGCTT</genome_strand>
        <mrna_strand>CAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAACACCGATTGGCATTACTGGGTGCNGCAAACAAGTATGATATTGTAGATTTGAAGAATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708355" ref_strand="+" ref_description="SGN-E708355 [FA35CB09]">
      <seq>ccagtcagcaaggtagagactctatcaaggttagctcaatggacgatcgacaatttcacagcatctacttacaaaagatctgacccttttaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcgattgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgcttcgtgttactacaactggaaccaatcggagacctcatatatctcctgtatatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgtttacaaggtcgatttgtcattgatgttgagttccttgacctgaagatctacaccccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatactgatgttaccattaatacggctgatggatcagtgcaagctcacagagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagagtcctctataatcgacatagaagacatgtcaacagaatcatgcacagcgcttcttagttacttgtatggaaccataaaacaagaggatttctggaagcaccgattggcattactgggtgcggcaaaaaagtatgatattgtagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61954" stop="58806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61655" g_stop="61546" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="262" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="378" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59106" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="743" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E708355" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61655" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTACTGGGTGCGGCAAACAAGTATGATATTGTAGATTT</genome_strand>
        <mrna_strand>CCAGTCAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGACGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTACTGGGTGCGGCAAAAAAGTATGATATTGTAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452564" ref_strand="+" ref_description="SGN-E452564 [cSTS-17-A12]">
      <seq>gcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggtatctgtcaattgagaagaatcggtctttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagatctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttctgtggcctattgattcttgtttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccacatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttaccattaatacggctgatggatcagtgcaagctcacaaagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagaatcctctantatcgacatagaggacatgtcaacagaatcatgcaaagcgcttctcagttacttgtatgggacccataaacaagaggatttctggaagcaccgattggcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61948" stop="58840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61648" g_stop="61546" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="255" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="371" r_length="116" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59140" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="702" r_length="331" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E452564" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61648" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTAC</genome_strand>
        <mrna_strand>GCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GTATCTGTCAATTGAGAAGAATCGGTCTTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGATCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTCTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCACAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAAAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAATCCTCTANTATCGACATAGAGGACATGTCAACAGAATCATGCAAAGCGCTTCTCAGTTACTTGTATGGGACCCATAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456971" ref_strand="+" ref_description="SGN-E456971 [cPRO-2-A11]">
      <seq>agaagaatgacagagggcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggtatctgtcaattgagaagaatcggtctttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagatctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttctgtggcctattgattcttgtttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccacatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttaccattaatacggctgatggatcagtgcaagctcacaaagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagaatcctctataatcgacatagaggacatgtcaacagaatcatgcaaagcgcttctcagttacttgtatgggaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61964" stop="58878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61664" g_stop="61546" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="271" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="387" r_length="116" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59178" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="680" r_length="293" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E456971" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61664" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCAT</genome_strand>
        <mrna_strand>AGAAGAATGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GTATCTGTCAATTGAGAAGAATCGGTCTTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGATCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTCTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCACAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAAAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAATCCTCTATAATCGACATAGAGGACATGTCAACAGAATCATGCAAAGCGCTTCTCAGTTACTTGTATGGGACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455209" ref_strand="+" ref_description="SGN-E455209 [cSTS-25-L9]">
      <seq>aatgacagagggcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggtatctgtcaattgagaagaatcggtctttgtatattcggttgtttcctggaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagatctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttctgtggcctattgattcttgtttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccacatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttaccattaatacggctgatggatcagtgcaagctcacaaagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagaatcctctataatcgacatagaggacatgtcaacagaatcatgcaaagcgcttctcagttacttgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61958" stop="58885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61659" g_stop="61546" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="266" r_length="152" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="382" r_length="116" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59185" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="668" r_length="286" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E455209" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61659" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATG</genome_strand>
        <mrna_strand>AATGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GTATCTGTCAATTGAGAAGAATCGGTCTTTGTATATTCGGTTGTTTCCTGGACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGATCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTCTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCACAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAAAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAATCCTCTATAATCGACATAGAGGACATGTCAACAGAATCATGCAAAGCGCTTCTCAGTTACTTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559162" ref_strand="+" ref_description="SGN-E559162 [18615]">
      <seq>gaaaagggggaagaagaagcatgacagagggcaaggtagagactctatcaaggttagctcaatggaggattgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagacctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgcttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttactattaatacggctgatggatcagtgcaagctcacaaagcgatgctgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagaattctctataatcgacatagaggacatgtcaacagaatcatgcaaagcgcttctcagttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61973" stop="58890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61681" g_stop="61546" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="285" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="401" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59190" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="682" r_length="281" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E559162" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61681" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGGGGGAAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTT</genome_strand>
        <mrna_strand>GAAAAGGGGGAAGAAG-A--AGCATGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATTGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGCTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACTATTAATACGGCTGATGGATCAGTGCAAGCTCACAAAGCGATGCTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAATTCTCTATAATCGACATAGAGGACATGTCAACAGAATCATGCAAAGCGCTTCTCAGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584803" ref_strand="+" ref_description="SGN-E584803 [10724]">
      <seq>ccccgggctgcagggggggaagaagaagcatgacagagggcaaggtagagactctatcaaggttagctcaatggaggattgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagacctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgcttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttactattaatacggtgatggatcagtgcaagctcacaaagcgatgctgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagaatcctctataatcgacatagaggacatgtcaacagaatcatgcaaagcgcttctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61985" stop="58896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61685" g_stop="61546" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="142" r_length="139" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="294" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="410" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59196" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="684" r_length="274" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E584803" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61685" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCAAGGGGGAAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAG</genome_strand>
        <mrna_strand>CGGGCTGCAGGGGG-GGAAGAAGAAGCATGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATTGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGCTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACTATTAATACGG-TGATGGATCAGTGCAAGCTCACAAAGCGATGCTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAATCCTCTATAATCGACATAGAGGACATGTCAACAGAATCATGCAAAGCGCTTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337401" ref_strand="+" ref_description="SGN-E337401 [cTOE-18-G24]">
      <seq>caaggtagagactctatcaaggttagctcaatggaggatcgacaatttcacagcatctacttacaaaagatctgacccttttaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcgattgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgcttcgtgttactacaactggaaccaatcggagacctcatatatctcctgtatatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgtttacaaggtcgatttgtcattgatgttgagttccttgacctgaagatctacaccccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatactgatgttaccattaatacggctgatggatcagtgcaagctcacagagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagagtcctctataatcgacatagaagacatgtcaacagaatcatgcacagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61947" stop="58903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61647" g_stop="61546" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="254" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="370" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59203" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="638" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E337401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61647" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGC</genome_strand>
        <mrna_strand>CAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456009" ref_strand="+" ref_description="SGN-E456009 [cSTS-28-C8]">
      <seq>atgacagagggcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggtatctgtcaattgagaagaatcggtctttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagatctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttctgtggcctattgattcttgtttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccacatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttaccattaatacggctgatggatcagtgcaagctcacaaagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagaatcctctataatcgacatagagggacatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61958" stop="58923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61658" g_stop="61546" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="265" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="381" r_length="116" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59223" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="630" r_length="249" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E456009" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61658" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGA-AGACATGTC</genome_strand>
        <mrna_strand>ATGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GTATCTGTCAATTGAGAAGAATCGGTCTTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGATCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTCTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCACAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAAAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAATCCTCTATAATCGACATAGAGGGACATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404619" ref_strand="+" ref_description="SGN-E404619 [PPC-14-L13]">
      <seq>gaatgacagagggcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatacggaactggtatctgtcaattgagaagaatcggtctttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagatctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttctgtggcctattgattcttgtttacaaagtcgattcatcattgatgttgagttccttgacctgaagatctacacaccacatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttaccattaatacggctgatggatcagtgcaagctcacaaagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagaatcctctataatcgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61960" stop="58935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61660" g_stop="61546" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.643" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="267" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="383" r_length="116" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59235" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="619" r_length="236" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E404619" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61660" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACAT</genome_strand>
        <mrna_strand>GAATGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATACGGAACTG................................................................................GTATCTGTCAATTGAGAAGAATCGGTCTTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGATCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTCTGTGGCCTATTGATTCTTGTTTACAAAGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCACAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAAAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAATCCTCTATAATCGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568555" ref_strand="+" ref_description="SGN-E568555 [12856]">
      <seq>agggggaagaagaagcatgacagagggcaacgtagagactctatcaaagttagctcgaatggaggattgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagacctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgcttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttactattaatacggctgatggatcagtgcaagctcacaaagcgatgctgtctgctacttctcctgtattccacagcatgttccttcacgatctcaggggagaaagaatcctctataatcgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61973" stop="58936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61674" g_stop="61546" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="282" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="398" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59236" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="634" r_length="236" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E568555" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61674" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTC-AATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCA-GGGAGAAAGAGTCCTCTATAATCGACA</genome_strand>
        <mrna_strand>AGGGGGAAGAAGAAGCATGACAGAGGGCAACGTAGAGACTCTATCAAAGTTAGCTCGAATGGAGGATTGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGCTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACTATTAATACGGCTGATGGATCAGTGCAAGCTCACAAAGCGATGCTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGGAGAAAGAATCCTCTATAATCGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303309" ref_strand="+" ref_description="SGN-E303309 [cLEX-2-G13]">
      <seq>agacagcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcacagcatctacttacaaaagatctgacccttttaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcgattgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgcttcgtgttactacaactggaaccaatcggagacctcatatatctcctgtatatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgtttacaaggtcgatttgtcattgatgttgagttccttgacctgaagatctacaccccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctgtctcgcatgcttgatgagtccatccatactgatgttaccattaatacggctgatggatcagtgcaagctcacagagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61953" stop="58964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61653" g_stop="61546" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="260" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="376" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59264" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="583" r_length="207" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E303309" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61653" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTC</genome_strand>
        <mrna_strand>AGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTGTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454299" ref_strand="+" ref_description="SGN-E454299 [cSTS-22-F24]">
      <seq>gaatgacagagggcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggtatctgtcaattgagaagaatcggtctttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagatctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttctgtggcctattgattcttgtttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccacatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttaccattaatacggctgatggatcagtgcaagctcacaaagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61960" stop="58965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61660" g_stop="61546" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="267" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="383" r_length="116" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59265" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="589" r_length="206" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E454299" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61660" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCT</genome_strand>
        <mrna_strand>GAATGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GTATCTGTCAATTGAGAAGAATCGGTCTTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGATCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTCTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCACAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAAAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480372" ref_strand="+" ref_description="SGN-E480372 [cSTD-13-P1]">
      <seq>gaagaagaagaatgacagagggcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggtatctgtcaattgagaagaatcggtctttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagatctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttctgtggcctattgattcttgtttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccacatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttaccattaatacggctgatggatcagtgcaagctcacaaagcgatactgtctgctacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61969" stop="58998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61669" g_stop="61546" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="276" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="392" r_length="116" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59298" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="565" r_length="173" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E480372" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61669" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTC</genome_strand>
        <mrna_strand>GAAGAAGAAGAATGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GTATCTGTCAATTGAGAAGAATCGGTCTTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGATCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTCTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCACAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAAAGCGATACTGTCTGCTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563189" ref_strand="+" ref_description="SGN-E563189 [1548]">
      <seq>gggaagaagaagaatggcagagggcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatctggaactggcatctgtcaattgagaagaatcggtatttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgttaatacaactggaaccaatcggagacctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgcttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttaccattaatacggctgatggatcagtgcaagctcacaaaggcgatgctgtctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61969" stop="59002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61671" g_stop="61546" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.643" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="278" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="394" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59302" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="564" r_length="170" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E563189" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E563189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61671" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGA-GCGATACTGTCTGCTA</genome_strand>
        <mrna_strand>GGGAAGAAGAAGAATGGCAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATCTGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTAATACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGCTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAAAGGCGATGCTGTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358314" ref_strand="+" ref_description="SGN-E358314 [cLHT-28-C6]">
      <seq>aactttatataatgattcatcactagcagaggctaggggaagaagaaggaggatgacagacagcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcacagcatctacttacaaaagatccgaccctttcaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcgattgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgcttcgtgttactacaactggaaccaatcggagacctcatatatctcctgtatatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgtttacaaggtcgatttgtcattgatgttgagttccttgacctgaagatctacaccccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="62011" stop="59051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61711" g_stop="61546" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="317" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="433" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59351" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="553" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E358314" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61711" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTATATAATGATTCATCACTAGCAGAGTCAAGGGGGAAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATT</genome_strand>
        <mrna_strand>AACTTTATATAATGATTCATCACTAGCAGAGGCTA-GGGGAAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCCGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718668" ref_strand="+" ref_description="SGN-E718668 [FC05BF08]">
      <seq>acaaaaaatctgacccttttaaaattggtatatggaactggcatctgtcatttgagaagaatcggcatttgtatattcgattgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgcttcgtgttactacaactggaaccaatcggagacctcatatatctcctgtatatgagaggctgcttcaaacaagtgatgactttgtgtggccaattgattcttgtttacaaggtcaatttgtcattgatgttgagttccttgacctgaaaatctacaccccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatactgatgttacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61885" stop="59053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61585" g_stop="61546" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="192" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="308" r_length="116" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59353" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="426" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E718668" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61585" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCA</genome_strand>
        <mrna_strand>ACAAAAAATCTGACCCTTTTAAAATTGGTATATGGAACTG................................................................................GCATCTGTCATTTGAGAAGAATCGGCATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAGAGGCTGCTTCAAACAAGTGATGACTTTGTGTGGCCAATTGATTCTTGTTTACAAGGTCAATTTGTCATTGATGTTGAGTTCCTTGACCTGAAAATCTACACCCCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399958" ref_strand="+" ref_description="SGN-E399958 [cSTC-3-D10]">
      <seq>gaagaatgacagagggcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggtatctgtcaattgagaagaatcggtctttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagatctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttctgtggcctattgattcttgtttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccacatggtggagaaagaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61963" stop="59077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61663" g_stop="61546" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="270" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="386" r_length="116" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59377" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="480" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E399958" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61663" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATG</genome_strand>
        <mrna_strand>GAAGAATGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GTATCTGTCAATTGAGAAGAATCGGTCTTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGATCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTCTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCACAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAAGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475765" ref_strand="+" ref_description="SGN-E475765 [cSTB-41-P5]">
      <seq>gaatgacagagggcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggtatctgtcaattgagaagaatcggtctttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagatctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttctgtggcctattgattcttgtttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccacatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61960" stop="59121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61660" g_stop="61546" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="267" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="383" r_length="116" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59421" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="433" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E475765" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61660" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTT</genome_strand>
        <mrna_strand>GAATGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GTATCTGTCAATTGAGAAGAATCGGTCTTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGATCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTCTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCACAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411506" ref_strand="+" ref_description="SGN-E411506 [STM-14-F6]">
      <seq>tgacagagggcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggtatctgtcaattgagaagaatcggtctttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagatctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttctgtggcctattgattcttgtttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccacatgtgagttcttgatattctgtagtgttcaagtgtgtgtttaatatgcatgactgtatgagattgctacatgaaatggttctctgataaactgcctatctagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61957" stop="59391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61657" g_stop="61546" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="264" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59691" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="482" r_length="218" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E411506" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61657" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTT</genome_strand>
        <mrna_strand>TGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GTATCTGTCAATTGAGAAGAATCGGTCTTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGATCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTCTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCACATGTGAGTTCTTGATATTCTGTAGTGTTCAAGTGTGTGTTTAATATGCATGACTGTATGAGATTGCTACATGAAATGGTTCTCTGATAAACTGCCTATCTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476025" ref_strand="+" ref_description="SGN-E476025 [cSTB-43-G15]">
      <seq>gaagaatgacagagggcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggtatctgtcaattgagaagaatcggtctttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagatctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttctgtggcctattgattcttgtttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61963" stop="59493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61663" g_stop="61546" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="270" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="386" r_length="116" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E476025" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61663" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT</genome_strand>
        <mrna_strand>GAAGAATGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GTATCTGTCAATTGAGAAGAATCGGTCTTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGATCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTCTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239310" ref_strand="+" ref_description="SGN-E239310 [cLEL-9-D10](-)">
      <seq>taaatctcccagtggaaaaaatggattattatgttcctggttaagaactggatcaaacagacaatccattggttgtaaatgtgtaacattgttgtttgtaactcttttatttttggcatggcatcttagaatcgggaagttttcaatgtgttgtgaacaggaaatggtctctctacctccacgaggtagtggtaaggtctgcgttcatcctccatatactttgcttgtgggacttatgagatttcaatgggtatgttgttgtcgtaaacaagatcctatcgagcaatagaagaccagtataataccggtcttctgcgtgtgtattgtatggcagtttgaatatgttccaagttggaatctgtttgctgataaatggagttcaataatcattgtattatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="65791" stop="16372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65491" g_stop="65092" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65091" i_stop="64351" i_length="741">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64350" g_stop="64332" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="419" r_length="19" r_score="0.579"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E239310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65491" e_stop="65092"/>
          <exon e_start="64350" e_stop="64332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTTATGCCTTAGTGTATATGCATTTTATGGCTGAAATATTTACTCTCATGTATCGCAATGATTCAATTGACTTGAGTTTTAAGAACTCCAATAATACGTAAGAACACTGTAGAATAATTTTCTTATCAGTCGAAAAAGCAGAATTAGCGTAAAGCGTATTGTTCTACGCCATTATATAATATAATGTCGTACATTCATAATTTGAATAATAAATTTACAGGATAAGTAGGGTATAGGGAGACGTACTTTGAAAAGGTAGGTAAAAGATGAGATATAATAAGGGCAAAGGTTAAAGATAAAATTACCACTTGTCCCATATAAGTTTATAATTACGAAAATTTTTCAAACTAATATTATAATGTAAACATTGATGTATTATTCTGATGTGTGAGATATATTAATTGTTAAGTAAGATACATTACATTTTATAATGATACACTAAACTGATGTATATTTTATACATGATACACTAATCTGATGCGCGAGTTACATTATACATTAATTTGATATGTTGATATATTAATGTGATGCGTGAAAATGAGGAATTTTGGGGTAAAACTAATAGGGGTTAATGGTAATAAGAAAACTTAAATGTGGGAATTCTGTCATTTTAAGTATAATTATCAAACACAAAATGAGAAGAAACTATTAATGTAATATTGCGATAACATTAAATCAATTGTTATATAAAATAAGTTTTTTTGTTATTACATATTGATGAATTTAAACGGTATCATATTATAGAACTGAAGTAACAATTAAA</genome_strand>
        <mrna_strand>TAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238936" ref_strand="+" ref_description="SGN-E238936 [cLEL-9-D10](-)">
      <seq>aaaatggattattatgttcctggttaagaactggatcaaacagacaatccattggttgtaaatgtgtaacattgttgtttgtaactcttttatttttggcatggcatcttagaatcgggaagttttcaatgtgttgtgaacaggaaatggtctctctacctccaccaggtagtggtaaggtctgcgttcatcctccatatactttgcttgtgggacttatgagatttcaatgggtatgttgttgtcgtaaacaagatcctatcgagcaatagaagaccagtataataccggtcttctgcgtgtgtattgtatggcagtttgaatatgttccaagttggaatctgtttgctgataaatggagttcaataatcattgtattatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="65774" stop="16372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65474" g_stop="65092" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65091" i_stop="64351" i_length="741">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64350" g_stop="64332" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="402" r_length="19" r_score="0.579"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E238936" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65474" e_stop="65092"/>
          <exon e_start="64350" e_stop="64332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTTATGCCTTAGTGTATATGCATTTTATGGCTGAAATATTTACTCTCATGTATCGCAATGATTCAATTGACTTGAGTTTTAAGAACTCCAATAATACGTAAGAACACTGTAGAATAATTTTCTTATCAGTCGAAAAAGCAGAATTAGCGTAAAGCGTATTGTTCTACGCCATTATATAATATAATGTCGTACATTCATAATTTGAATAATAAATTTACAGGATAAGTAGGGTATAGGGAGACGTACTTTGAAAAGGTAGGTAAAAGATGAGATATAATAAGGGCAAAGGTTAAAGATAAAATTACCACTTGTCCCATATAAGTTTATAATTACGAAAATTTTTCAAACTAATATTATAATGTAAACATTGATGTATTATTCTGATGTGTGAGATATATTAATTGTTAAGTAAGATACATTACATTTTATAATGATACACTAAACTGATGTATATTTTATACATGATACACTAATCTGATGCGCGAGTTACATTATACATTAATTTGATATGTTGATATATTAATGTGATGCGTGAAAATGAGGAATTTTGGGGTAAAACTAATAGGGGTTAATGGTAATAAGAAAACTTAAATGTGGGAATTCTGTCATTTTAAGTATAATTATCAAACACAAAATGAGAAGAAACTATTAATGTAATATTGCGATAACATTAAATCAATTGTTATATAAAATAAGTTTTTTTGTTATTACATATTGATGAATTTAAACGGTATCATATTATAGAACTGAAGTAACAATTAAA</genome_strand>
        <mrna_strand>AAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACCAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413915" ref_strand="-" ref_description="SGN-E413915 [STM-18-L7]">
      <seq>tgaggttaatggcccggatgaagacattcttggggttgtcgagaggtgggaagaggatgaaacacataacccagatgttccagcaatttcacacaagaggggtctaacaccttttgtctttgtttcatttgaggaggtggaaacttcagttctaaatctcccagtggaaaaaatggattattatgttcctggttaagaactggatcaaacagacaatccattggttgtaaatatgtaatattgttgtttgcaactcttttatttttggcatcttagaatcggaaagttttcaatttgttgtgaacaggaaacggtctctctacctccacaaggtagtggtgaggtctgcgttcaccctccttatacttcacttgtgggacttgtgggatttcactgggtatgttgtcgtaacaagttcctatcgaacaatgaaagaccagtataataccggtctctgtgtgtgcattgtatggcagtttgaatatgttccaagttggaatctgtttgataataaagggagaaaaataatcattgtattaaaaaaaaaagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="66641" stop="64814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66341" g_stop="66206" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66205" i_stop="65508" i_length="698">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65507" g_stop="65096" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="538" r_length="402" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="549"/>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E413915" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413915" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66341" e_stop="66206"/>
          <exon e_start="65507" e_stop="65096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTTAATGGCCCGGATGAAGACATTCTTGGAGTTGTCGAGAGGTGGGAAGAGGATGAAACACATAACCCAGATGTTCCAGCAATTTCACACAAGAGGGGTCTAACACCTTTTGTCTTTGTTTCATTTGAGGAGGTGAGTTTATCTTTCACATTTGTGCGAAGGAGTCCCTTTTTTCACATCAAGCAAAAAGAAGATCCAGGTTCACATCTAACAATTAGTATTTGATTATTGAGGCAATTCTAATAGGTGACGAAATATTTTTATGATTGAACATGATGTAGTGTCTTCTAATTAACTTAAAAAGGGAGTAGTATCTCTAAATTCGAAGCTAGCTTAATATTCATGTATAATCTTGACACAGCGGATATAGGTCTATATACCAAATAAGTAAAAGAAAAATTGGCTAAAAGTCACTTAGCAGTTCTATCAGAAGATACAATAATATATGGTTTCTTCATTATTTAAACATCCAAATCAACTGCTGCAGGTATATGCTTTGAGTCATTCAGTGTTATCTCCATCTTGCTTGCGTACAGTGTCTCGCGATTTTTATCATTATGATTCATTGCTTACAATCTTTGATGTTTTTAGCTCCTCTCTATTCGATGCTATGAACCATGAGGCACCAAACCATCCTTCATTTTCCATCTGCTAGAATCAGTTTTTAATTTTTTCAGCCTTGACAAACGACCCATATTCTATCGCGTGATTACGCTAGAAGCAACTTCTCAATTTTTCTGTTTAATAAAGATTTCAGATATATCTTCTATCACTTGCACAATGACTGAACACTAACACTTTGCTTCTTATCCTCTTTTTCCTGGATATAGGTGGAAACTTCAGTTCTAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATT</genome_strand>
        <mrna_strand>TGAGGTTAATGGCCCGGATGAAGACATTCTTGGGGTTGTCGAGAGGTGGGAAGAGGATGAAACACATAACCCAGATGTTCCAGCAATTTCACACAAGAGGGGTCTAACACCTTTTGTCTTTGTTTCATTTGAGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAACTTCAGTTCTAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATATGTAATATTGTTGTTTGCAACTCTTTTA-TTTT----TGGCATCTTAGAATCGGAAAGTTTTCAATTTGTTGTGAACAGGAAACGGTCTCTCTACCTCCACAAGGTAGTGGTGAGGTCTGCGTTCACCCTCCTTATACTTCACTTGTGGGACTTGTGGGATTTCACTGGGTA---TGTTGTCGT-AACAAGTTCCTATCGAACAATGAAAGACCAGTATAATACCGGTC-TCTGTGTGTGCATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGATAATAAAGGGAGAAAAATAATCATTGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745492" ref_strand="+" ref_description="SGN-E745492 [GI|47105586]">
      <seq>ggctaatagacggctattataaattgggaaaattgatttccttaaaatttccccctttttcatttcttcctttacacagtttttctcgggctggatatccaaattgtcaagcacaacattcaaaaccaagaaaaatggcctcagattacacagtggaacttgctgtggaactcgaaactgctgcacagttgagagcttctcagttcatttttcctcataggccatggcttgatttgtatgggattaatgttagacctgtcgctccttttggaagtgctagcagcaagcagtttgttgaccctgcattgatacaccgagtactacctgatgaactgctttttgagatcttgtcaaaaacgaccccatacaccttgggtaaggcagcttgtgtttgtcgaaagtggaggtatacaattcggaaccctgtattttggcgcaatgcatgcctaaaggcttggcaggtttctggattggtagaaaactataaggtccttcacttgaagtatgatggttcatggagaaaaatgtggcttttaagaccaaggattcgtacggatggtatttatgtcagtcgaaacacatatattcgtgcaggaatagctgagtggaagatcactaatccagttcatcttgtgtgttactatcgctatatgagattttatccttctggcaggttcctttataagaattcatcacaaaaagtcaaagatgtagcgaagtacctgaacttccgtgcctcaaaagctgattgtgtttttaaggggaattacactctatcagaggataaagttgaagctgctcttttgtacccgggaatgcgtccaactgtgttgagattccgcttaaggttgaggggtacaacccaaggtgctaataacagaatggatctacttgctcttcttacaagtggcgtgaatgataatgaggttaatggcccggatgaagacattcttggagttgtcgagaggtgggaagaggatgaaacacataacccagatgttccagcaatttcacacaagaggggtctaacaccttttgtctttgtttcatttgaggaggtggaaacttcagttctaaatctcccagtggaaaaaatggattattatgttcctggttaagaactggatcaaacagacaatccattggttgtaaatgtgtaacattgttgtttgtaactcttttatttttggcatggcatcttagaatcgggaagttttcaatgtgttgtgaacaggaaatggtctctctacctccacgaggtagtggtaaggtctgcgttcatcctccatatactttgcttgtgggacttatgagatttcaatgggtatgttgttgtcgtaaacaagatcctatcgagcaatagaagaccagtataataccggtcttctgcgtgtgtattgtatggcagtttgaatatgttccaagttggaatctgtttgctgataaatggagttcagcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="74112" stop="64806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73813" g_stop="73670" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73669" i_stop="72712" i_length="958">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72711" g_stop="72625" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="231" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72458" g_stop="72346" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="344" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70819" g_stop="70703" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="461" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70618" g_stop="70522" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="558" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70521" i_stop="69583" i_length="939">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69582" g_stop="69509" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="632" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69508" i_stop="67823" i_length="1686">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67822" g_stop="67769" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="686" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67768" i_stop="67669" i_length="100">
            <donor d_prob="0.438" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67668" g_stop="67567" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="788" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67566" i_stop="67386" i_length="181">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67385" g_stop="67327" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="847" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67326" i_stop="66417" i_length="910">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66416" g_stop="66206" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="848" r_stop="1058" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="66205" i_stop="65508" i_length="698">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="65507" g_stop="65110" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1059" r_stop="1456" r_length="398" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1459" polyA_stop="1474"/>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E745492" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1456</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73813" e_stop="73670"/>
          <exon e_start="72711" e_stop="72625"/>
          <exon e_start="72458" e_stop="72346"/>
          <exon e_start="70819" e_stop="70703"/>
          <exon e_start="70618" e_stop="70522"/>
          <exon e_start="69582" e_stop="69509"/>
          <exon e_start="67822" e_stop="67769"/>
          <exon e_start="67668" e_stop="67567"/>
          <exon e_start="67385" e_stop="67327"/>
          <exon e_start="66416" e_stop="66206"/>
          <exon e_start="65507" e_stop="65110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAATAGACGGCTATTATAAATTGGGAAAATTGATTTCCTTAAAATTTCCCCCTTTTTCATTTCTTCCTTTACACAGTTTTTCTCGGGCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAGGTGAGCTATGAAATTCTCCAAAATGTGAACTTTTTTCTCTCTATTGTGTTCTAGAATTGGTTTTTACCTTCTGTGTATTTGTAAATTTAAATTCTTTGGTTGGAATCTTTCTTGGGTTTTGGGATATGGAAAGGGTTGTGTATGATTGAGAAGGAGTTGTATTGTAAGAAAGTTCAAATTTTTGGTTGGATTTTACTGGGATTTCATTAATTTCAGGGAGAAGTGAAAAAAATTGAATCTTTGTTTTAATATATGTGTTTTGTAGTGGTTGTTGCTTATTTGTATGTTCTTTTCAGCTTTTGTTTTATCGTATAGTGTATTGTTTTGTGTTCAATGGAGCTGATATAAAGCATGGTAGACAGGGTTTATATTACCAATAATGCTAGGTGATTAGTAGGTACGCAATGGATTAGTCACGGTGCGAAGGACCCCGGTTACTATTTTTAAGGAAAAAGGAGAAGATAATTGGGTCTGTTCATATCCAAATCTTTCATAGATAAAAGATTAGACTCGTCACTCGTCTATATTTTAGCTGGTCTGCAGTTAGATGAATCTTTCTGTTCTGCAGTCATTGCTAGTTTGAGAAGTTGGAACTACTGATTCAAGAGTGATTTTATGCAACTTGCCCGTTCTGTTGCAATAGTTTTCATTTATTGTAGGTTTGTTAGCTTGATCTTATTATCTTTTTAACTCATTGAGTAATGGAAGTATTTATTTCCAAATTATGTATCTATCTATCTATATATATGCATCTTTTTTGTCAATCTCTGTGTTTTTTGTCTCAGTTTACTGGTTTATGAATAAATCTGATTAGTCTTGTCAACTGGACATTGATCAGCTTTCGGACTTTTCTTCCTTGAGTTAATTTCAGAACTACAAATTGCCGCTTTTTGGTGTTTTCATGTTCTTCTTGTTCTGTATTTGTCATTATTTATTGATGATGGCTCATATCTTGCAGATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTGGTATTTTTCAAGCACTTTGTCATTGCTTACTTCAATTACCTTGCTCCTAGCAATTTGCTGCATAAAAGATTCATCATTTCTTGGATTCTTTATATTGACATTTGGTTTTGATGATGGAATTTTGTGGAACAGACTATTGTCAATTCAACTGCCTTTTTTCTTTCAGATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAGGTATGCCTTTGTGGATTTCAATTAATTTCCTCTGTAATTTTCTGATCAACATGTAAATATGTGGCAAGTGTTGGAAATGCTTTGTTACGATAGGAAGCTGAAGCATATTGATAAGACTTACAACAGAGCTGATTTTGCTAAACCAATTAATTGGTATCCAAAGTATGAACAATGTTTTTCTATAAATCAAAAGAAAATATTAACCAGAAAGTAAGGTATTTGTGGCTGTTTTGGGTTACATGTATATTTATGGTGAGGCGATATCTAACTACCCCCCTAAGAACAACTTTAATTTCATGCACATGCAAGAAGTTAGTGGATTCTACGTGGACACAAGCGTTGCTATTTTAACATCTACCTTGAGCCTTTTTCCCCTTCAATTCTTCTGAGGAGCATCCTTGGTAGCAAAGTTGGATGTCATCTCTGTCTTCTTCACAGACGAGGAACGTTGGACTCTATGATCTCATTACAGTAATCAAGTTGAGCTTTGCAACCAAGCTTAAATGTGACTGTTCCCTTTGATTCTTTCTCTGGATGGTTAGCTGGTTTTCACTGAGAATTTATTGGATTAGTCTTTAATATACTCCCACCTAGGGGTGTTTGTGGTTTGGTTTGGATCGGATATTGGTTAAAACCAAAACCAAACCAATCTAGTCGGGTTTTTAAATTTCTAAAACCAAACCAAACCAAATGAAAAAAATAACTATCGGTTTGGTTATTGACGGTTTGGTTCGGTTTTTCTGCATTTTTTCGGTTTGAAAGTAATAAATTTTTTAGGACATATGTATCTTGATTTAAAAAACATCTAGTACATGAATAATCCACAAGAGAGCTATTGTTGGTTCAATTAAGCAATTAAGCAATACTAGAGTTATCATTACCCGAACAAAGTTATTAAATTAAGAGAAAGTGTGTGACTATCTTATGAAAGGTATGGTAGGGAATAAATTTTGATGGAATTGGACTTAGGATTGTAATTAAGCTAAAATTTAAGTGTTAGGCTTGAGAAAATTGTAAACTTAAAGACTTAAGTTACTTAAAATTTAACACAGTATTTATATTTATTTATAAATAATATATAAATAATTATAAAATTTAAATTTCTAATTTATCGGTTTGGTTTGGTTATTTTTGCAGTTGTTTTTTTAGTAAAACCAAAACGAAACCAAACAGTATCGGTTTTCAAAATTTAAAAACCAAACCTAACCAAATCAAACCAAATATCGGGTTTTTTAATCGGTTTGGTTCGAATTACGGTTCGAATTGGTTGGTTAACCATAACCATGAACAGCCCTACTCCCACCCCATCTCTCTCCGGAGTTCTTTCTGTTTCCTTCCAATGGGTGAATTGAGGTTGCATATCTAGAGAACTGAAGGCAATCAAATGTAATGTCTTGATGTCTGCTTGAGAAAAATTATGCTGTTTCTAGATTGAAATTTAGCTTTTGCAGCCTTCCGTTCTAATCTTTATAGCTAAGGTGAGGGAACCGGAAACTTACTATCACTTCATGATTAATGTTGTGCAGATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAGGTACCAGGGACACTGGTTCTGGTTGTTCTATCGCGACTAGTGAGCTTTGTAAGTATCATTGACCATTGTGCCTCATTTTTGAAGGTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATGGTAAGATATAGTTTTTGATGAAGATGGTAAAATATTGCAATTACTTCGAAAAGTACTATAGTTACACCTGTTTCTATGACAAGAAGTTCCTTATTAATACCAAAAAAAATATCCTTATTAATTGTAAAATTCTTAAGGTAAGTTTTTATATCGGGAGGGAGAGAAGGCAGACGTGAGGGCATGTATAGGTGTTGGCTACTTCTTCTCGTTCGACATTGCAATAATATGGATTCTAATTCTTGATTTTGGTGACAAATGAAATGGACTTTTCTCAAGAAACTTGTGTGCCAATACTTTTAACTTCCATTTTTTACTTTTTGAATAGATAGGCGATCACGTATTGTAATTTCTTGGCTTTTCGTTATTACAATGCCAGATTTGATTATCCTCGAATCATTTCTGTTATTTGGTCATTGGATTAATACGAATTTTTTCTGTATTCAGGAAGAACCTCTAAGTTCTCAAGTTTTATGCCCTAATTGGTGCATCTGGAAAAAACAGTATTTGTTGATTGACATAGCTTTTCTATTAAATAAGAGTTGATAGTTGTTGAGCAAGCAAAAACAAGAGTTAAAAGTTGCTGATTTTCACCATTGTGAAAGTTTTGGTTGCTCCTAGTAGTATCATTAGAATTTTACTACTGAGCATTCAATATTTTGAAAGCTGGGGATTTTAAGTTTTTTCACGAAGTGTCTTAAAGCTGGGTATAGTGTATTTGGTAGGGATGTATGATTGTATTTTCCAAAATAGATTTCTCTGTGGACCACATACCAAGGTATTTGTCTTGGATTTACTTACGCCATCTGAGCCGGAGAACTAATTTTTTCCCATCTGGATGTTTTTGCCGTAGCCTGTAAAAAATTTGGATTATTTGTATCCATAAGTCTAAGTTGAAATATTTGAAGGTAGTAAGAAGTCTTAATTTATTTTTTTCTGCAGGTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGTATGTGTATTCTTATCCTCCACATAGTTAAACTTGTGACATCTTGGATGCATGTTTAGAGATAAGCTGTGCTGGCAAATGCTGCATAGTGCTTGTAGGAGAATGCAAATTATGCAATATGCTAATTCATCTTTTGCGTTGTATATTTCATGACGGAAGATAGTTCAGAAAAAATGACAAATTAGACAAATGTGACATCCTCTTTTCCTTAGGATAAGAGGTAACTTGTTCAACAGTGCCAGAGCTTTGTACCTTATTTATCGTGAAGGTTTTTGATCGGTTGGACCTTTGTTATACTCCCTTCCCCAAAAGAAGAAAAAGGAAAGGTCCTTTAGTATGGTTTGAATATGTAGATGCGAGATGTTATCTTTGAGGGAATCAATTTTTAATCATCGGTTGTAAATTATTGAAGATATTCTAATCAAGAAAAATATTTTACACCAACTGCAAAGAAGGAGTATGCATCTTTTAATGACAAAGATCGTTTTCCTGTACAACTACCCTTTTCTTTCTTTAGATCACATTTTTGAGGGGGTTGGGAGAGGGTGTTAAACAAGTGCTACTTATGGGGGTTGAACTTTTCCCCTATTTGGTGGAAGGTTGTGTGCACTCACCAAGTGAAGCTTCACATATACAAAGGAAGGTGAGGGTATATATGTGGATGCTAAGGGTGCTCTACGAATATCATGTATACTAAAACTATTTCTGCTACCAGCATTGCTAACATCCTTAACAAACCTTACTACTCAGAACGCCTTCAAATGAGAGACCCTTGCTTTATTTCCCACCTTCTTGTTAATATCTTGTGCCACTACCCTCTTTATCCAACCAAATATCATGACCCGCATTTAGGGATTCATGACCGGCACCAGGCACCTGACTAACTACCCTTATCAAGCAAACCACTAAACTAACAACTGGTTAACTTCGCAAACATATGAAAATACTGTAGAACTGGAAATTAAAGTCAAACATACTGCATAGAACTGAAATATCTTAGTATAAGTCTCAACTGTAGAGTGTAAAACAAACCATACTACAAACTGGCCAAGTCAAACTAGTCATGAGCCATCTAGAAAAAACACAACTGTTACATAGGTCCATGGGTCATACCTCAAAATAAAGGAAAGACTATAAAAGCAGATTGAAACTCTTACGCAAAGATGAATGGAAGATGTTGATGGGGGATGCCAGATTTAGCTGGTGATACGGAGCTTAGAGGTACCTGTCGCTGCACCCAAAAAATTAAGCAGCGAGTTGTAGCCACAATACTCAGCAAGTATCTGTGATAGCCTACAGAGCGGTGGAACAAGATTTAAATAAAACATGAGATGCACGAGTAGCAGAAATACGTTTTCATCGGAAAATTGATACTGAAAATTGAAAGCTGTAAAAGCATGGGATGCAGCTAAACAGTGCAAATAGACTTGCTCTGCCGGGGACTCCAGAAAACAGCAAGTTGTGGGGTACTGCAAGAAGACCTGTTCTGCTTGAGAGAGGATGTTTCCCTCGTCTGAGAGAACTGATATAAGTTGTAGGCTATTGTAAACAGAGTTTGGATTCTAATCAGTATGACATCTTTGAGTTGTTCAGTTTCCTCCCATTGCTTCTTTTCTTCACTTTGCATCCTATAGCAATTAGTATCAATGGCATTTTATAACATTGTCATCTTCTCTTTGATTGTAGGTGTGTTACTATCGCTATATGAGATTTTATCCTTCTGGCAGGTTCCTTTATAAGGTAGTAATCATTTGTTGTTCAGCTCGTGTGGCATACTAGATCTTTGCACGTTGTTCTTGCTATACCTAGTTTATAACTATTGTAGATTTCTTTTAACTAGAATTCATCACAAAAAGTCAAAGATGTAGCGAAGTACCTGAACTTCCGTGCCTCAAAAGCTGATTGTGTTTTTAAGGGGAATTACACTCTATCAGAGGATAAAGTAAGTCCAATTCTAATCTTCCTGTACAAGTCAATTTGTTTCTGGCAGCAATTTGGTTATATACGCTCAAATCAAAATAATGGTTCATTCCTCCTTGCTTAAGTTGATAATGCTTTTGGCGTTTAGTTGATATATGTGATGCTAATTTCGAACAGACAGCTCACTGCCTTCTCATTTGCAGGTTGAAGCTGCTCTTTTGTACCCGGGAATGCGTCCAACTGTGTTGAGATTCCGCTTAAGGTACTTGATCATGGAGATTATATTTGTATTTTGAGTTCTTATGCTCACCTCTTGTTTAATAAAACTATGGTTGAAGGTTTGGGTACTTTTCCCCTGGCGCCACAAGTCACCATATTAGTTGTTAAACTTCCATCCGAGCCAAACTAGCTTCTAAGCAAAAAATTAATAAAAATCCCCATCTTTTAAGAGTGCAAGGCCAAGCTATATATAAATGCTTAAGTATAAAGTTGAGGATCTTGGTGGGATTCAGTTCCGATTCTTGTAGGTTTTGTTCGGGGATTCGATAAGCTAATTCCTGTAGATGTATATTTTCCAGGTTGCCCACCTATAAACTCATATGAAGGCAACAGGCTATCTTTTCCGGATCCTATAAACTATTGTAAAAGTTTAGTCGTGCACTTTGAATAAATGTGCATGAAAGTCGCACCTTATTCCTTACTGCAAGCAATGCTGGCATTTTTTTGTCCTTGGGATAAATCATCTTGCAGGTTAATAAATGTAGTGTGCATAATTTGTGGTAGCTAGTTGCTGGAATTTCTCCTGTAGATGAAATGAACAATTAATACTTGCGTCATTCCATTGAGTAGTCTTAATAGGTCCCAAATCTTCTATTGTAGTAAACAAAATTCAAACTTAGTAAACATTCTGTTATTTTTCACTTGCAGATGACACTTGCTTTTTATTTCTATCAGTTATAGTAATTTATTGTCTATCCACTCACTATATTGCATGTAAAATTTGAATTATTTTTATCATATAAATATGTAGAGTTTGAATTATATGATAAACCTGAAGTTTGTGGAGTAGAGTGTAAGATATGTTCACAAACATGTAATGCAGATTACTCTAACTGGTATGATTTCTACATGGTACTGTGTTTAATTCATATGACATTTCACGTGTCCATTAGGTTGAGGGGTACAACCCAAGGTGCTAATAACAGAATGGATCTACTTGCTCTTCTTACAAGTGGCGTGAATGATAATGAGGTTAATGGCCCGGATGAAGACATTCTTGGAGTTGTCGAGAGGTGGGAAGAGGATGAAACACATAACCCAGATGTTCCAGCAATTTCACACAAGAGGGGTCTAACACCTTTTGTCTTTGTTTCATTTGAGGAGGTGAGTTTATCTTTCACATTTGTGCGAAGGAGTCCCTTTTTTCACATCAAGCAAAAAGAAGATCCAGGTTCACATCTAACAATTAGTATTTGATTATTGAGGCAATTCTAATAGGTGACGAAATATTTTTATGATTGAACATGATGTAGTGTCTTCTAATTAACTTAAAAAGGGAGTAGTATCTCTAAATTCGAAGCTAGCTTAATATTCATGTATAATCTTGACACAGCGGATATAGGTCTATATACCAAATAAGTAAAAGAAAAATTGGCTAAAAGTCACTTAGCAGTTCTATCAGAAGATACAATAATATATGGTTTCTTCATTATTTAAACATCCAAATCAACTGCTGCAGGTATATGCTTTGAGTCATTCAGTGTTATCTCCATCTTGCTTGCGTACAGTGTCTCGCGATTTTTATCATTATGATTCATTGCTTACAATCTTTGATGTTTTTAGCTCCTCTCTATTCGATGCTATGAACCATGAGGCACCAAACCATCCTTCATTTTCCATCTGCTAGAATCAGTTTTTAATTTTTTCAGCCTTGACAAACGACCCATATTCTATCGCGTGATTACGCTAGAAGCAACTTCTCAATTTTTCTGTTTAATAAAGATTTCAGATATATCTTCTATCACTTGCACAATGACTGAACACTAACACTTTGCTTCTTATCCTCTTTTTCCTGGATATAGGTGGAAACTTCAGTTCTAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCA</genome_strand>
        <mrna_strand>GGCTAATAGACGGCTATTATAAATTGGGAAAATTGATTTCCTTAAAATTTCCCCCTTTTTCATTTCTTCCTTTACACAGTTTTTCTCGGGCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTG......................................................................................................................................................................ATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG....................................................................................GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTACTATCGCTATATGAGATTTTATCCTTCTGGCAGGTTCCTTTATAAG....................................................................................................AATTCATCACAAAAAGTCAAAGATGTAGCGAAGTACCTGAACTTCCGTGCCTCAAAAGCTGATTGTGTTTTTAAGGGGAATTACACTCTATCAGAGGATAAA.....................................................................................................................................................................................GTTGAAGCTGCTCTTTTGTACCCGGGAATGCGTCCAACTGTGTTGAGATTCCGCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGGTACAACCCAAGGTGCTAATAACAGAATGGATCTACTTGCTCTTCTTACAAGTGGCGTGAATGATAATGAGGTTAATGGCCCGGATGAAGACATTCTTGGAGTTGTCGAGAGGTGGGAAGAGGATGAAACACATAACCCAGATGTTCCAGCAATTTCACACAAGAGGGGTCTAACACCTTTTGTCTTTGTTTCATTTGAGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAACTTCAGTTCTAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473430" ref_strand="+" ref_description="SGN-E473430 [cSTB-32-I4]">
      <seq>tgtcagtcgaaacacatatattcgtgcaggagtagctgagtggaagatcactaatccagttcatcttgtgtgttactatcgctatatgagattttatccttcaggcagattcctttataagaattcatcacaaaaagtcaaagatgtcgcgaagtacctgaacttccgtgcctcaaaagctgattgtgtttttaaggggaattacacactatcagaggataaagttgaagctgctcttttgtaccctggaacgcgtccaactgtgttgaggttccgcttaaggttgaggggtacaacccaaggtgctaataacagaatggatctacttgctcttcttacaagtggcgtgaatgataatgaggttaatggcccggatgaagacattcttggggttgtcgagaggtgggaagaggatgaaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="69875" stop="65976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69575" g_stop="69509" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69508" i_stop="67823" i_length="1686">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67822" g_stop="67769" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="121" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67768" i_stop="67669" i_length="100">
            <donor d_prob="0.438" d_score="0.96"/>
            <acceptor a_prob="0.775" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67668" g_stop="67567" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="223" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67566" i_stop="67386" i_length="181">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67385" g_stop="67327" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="282" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67326" i_stop="66417" i_length="910">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66416" g_stop="66276" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="423" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E473430" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69575" e_stop="69509"/>
          <exon e_start="67822" e_stop="67769"/>
          <exon e_start="67668" e_stop="67567"/>
          <exon e_start="67385" e_stop="67327"/>
          <exon e_start="66416" e_stop="66276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGTATGTGTATTCTTATCCTCCACATAGTTAAACTTGTGACATCTTGGATGCATGTTTAGAGATAAGCTGTGCTGGCAAATGCTGCATAGTGCTTGTAGGAGAATGCAAATTATGCAATATGCTAATTCATCTTTTGCGTTGTATATTTCATGACGGAAGATAGTTCAGAAAAAATGACAAATTAGACAAATGTGACATCCTCTTTTCCTTAGGATAAGAGGTAACTTGTTCAACAGTGCCAGAGCTTTGTACCTTATTTATCGTGAAGGTTTTTGATCGGTTGGACCTTTGTTATACTCCCTTCCCCAAAAGAAGAAAAAGGAAAGGTCCTTTAGTATGGTTTGAATATGTAGATGCGAGATGTTATCTTTGAGGGAATCAATTTTTAATCATCGGTTGTAAATTATTGAAGATATTCTAATCAAGAAAAATATTTTACACCAACTGCAAAGAAGGAGTATGCATCTTTTAATGACAAAGATCGTTTTCCTGTACAACTACCCTTTTCTTTCTTTAGATCACATTTTTGAGGGGGTTGGGAGAGGGTGTTAAACAAGTGCTACTTATGGGGGTTGAACTTTTCCCCTATTTGGTGGAAGGTTGTGTGCACTCACCAAGTGAAGCTTCACATATACAAAGGAAGGTGAGGGTATATATGTGGATGCTAAGGGTGCTCTACGAATATCATGTATACTAAAACTATTTCTGCTACCAGCATTGCTAACATCCTTAACAAACCTTACTACTCAGAACGCCTTCAAATGAGAGACCCTTGCTTTATTTCCCACCTTCTTGTTAATATCTTGTGCCACTACCCTCTTTATCCAACCAAATATCATGACCCGCATTTAGGGATTCATGACCGGCACCAGGCACCTGACTAACTACCCTTATCAAGCAAACCACTAAACTAACAACTGGTTAACTTCGCAAACATATGAAAATACTGTAGAACTGGAAATTAAAGTCAAACATACTGCATAGAACTGAAATATCTTAGTATAAGTCTCAACTGTAGAGTGTAAAACAAACCATACTACAAACTGGCCAAGTCAAACTAGTCATGAGCCATCTAGAAAAAACACAACTGTTACATAGGTCCATGGGTCATACCTCAAAATAAAGGAAAGACTATAAAAGCAGATTGAAACTCTTACGCAAAGATGAATGGAAGATGTTGATGGGGGATGCCAGATTTAGCTGGTGATACGGAGCTTAGAGGTACCTGTCGCTGCACCCAAAAAATTAAGCAGCGAGTTGTAGCCACAATACTCAGCAAGTATCTGTGATAGCCTACAGAGCGGTGGAACAAGATTTAAATAAAACATGAGATGCACGAGTAGCAGAAATACGTTTTCATCGGAAAATTGATACTGAAAATTGAAAGCTGTAAAAGCATGGGATGCAGCTAAACAGTGCAAATAGACTTGCTCTGCCGGGGACTCCAGAAAACAGCAAGTTGTGGGGTACTGCAAGAAGACCTGTTCTGCTTGAGAGAGGATGTTTCCCTCGTCTGAGAGAACTGATATAAGTTGTAGGCTATTGTAAACAGAGTTTGGATTCTAATCAGTATGACATCTTTGAGTTGTTCAGTTTCCTCCCATTGCTTCTTTTCTTCACTTTGCATCCTATAGCAATTAGTATCAATGGCATTTTATAACATTGTCATCTTCTCTTTGATTGTAGGTGTGTTACTATCGCTATATGAGATTTTATCCTTCTGGCAGGTTCCTTTATAAGGTAGTAATCATTTGTTGTTCAGCTCGTGTGGCATACTAGATCTTTGCACGTTGTTCTTGCTATACCTAGTTTATAACTATTGTAGATTTCTTTTAACTAGAATTCATCACAAAAAGTCAAAGATGTAGCGAAGTACCTGAACTTCCGTGCCTCAAAAGCTGATTGTGTTTTTAAGGGGAATTACACTCTATCAGAGGATAAAGTAAGTCCAATTCTAATCTTCCTGTACAAGTCAATTTGTTTCTGGCAGCAATTTGGTTATATACGCTCAAATCAAAATAATGGTTCATTCCTCCTTGCTTAAGTTGATAATGCTTTTGGCGTTTAGTTGATATATGTGATGCTAATTTCGAACAGACAGCTCACTGCCTTCTCATTTGCAGGTTGAAGCTGCTCTTTTGTACCCGGGAATGCGTCCAACTGTGTTGAGATTCCGCTTAAGGTACTTGATCATGGAGATTATATTTGTATTTTGAGTTCTTATGCTCACCTCTTGTTTAATAAAACTATGGTTGAAGGTTTGGGTACTTTTCCCCTGGCGCCACAAGTCACCATATTAGTTGTTAAACTTCCATCCGAGCCAAACTAGCTTCTAAGCAAAAAATTAATAAAAATCCCCATCTTTTAAGAGTGCAAGGCCAAGCTATATATAAATGCTTAAGTATAAAGTTGAGGATCTTGGTGGGATTCAGTTCCGATTCTTGTAGGTTTTGTTCGGGGATTCGATAAGCTAATTCCTGTAGATGTATATTTTCCAGGTTGCCCACCTATAAACTCATATGAAGGCAACAGGCTATCTTTTCCGGATCCTATAAACTATTGTAAAAGTTTAGTCGTGCACTTTGAATAAATGTGCATGAAAGTCGCACCTTATTCCTTACTGCAAGCAATGCTGGCATTTTTTTGTCCTTGGGATAAATCATCTTGCAGGTTAATAAATGTAGTGTGCATAATTTGTGGTAGCTAGTTGCTGGAATTTCTCCTGTAGATGAAATGAACAATTAATACTTGCGTCATTCCATTGAGTAGTCTTAATAGGTCCCAAATCTTCTATTGTAGTAAACAAAATTCAAACTTAGTAAACATTCTGTTATTTTTCACTTGCAGATGACACTTGCTTTTTATTTCTATCAGTTATAGTAATTTATTGTCTATCCACTCACTATATTGCATGTAAAATTTGAATTATTTTTATCATATAAATATGTAGAGTTTGAATTATATGATAAACCTGAAGTTTGTGGAGTAGAGTGTAAGATATGTTCACAAACATGTAATGCAGATTACTCTAACTGGTATGATTTCTACATGGTACTGTGTTTAATTCATATGACATTTCACGTGTCCATTAGGTTGAGGGGTACAACCCAAGGTGCTAATAACAGAATGGATCTACTTGCTCTTCTTACAAGTGGCGTGAATGATAATGAGGTTAATGGCCCGGATGAAGACATTCTTGGAGTTGTCGAGAGGTGGGAAGAGGATGAAACACA</genome_strand>
        <mrna_strand>TGTCAGTCGAAACACATATATTCGTGCAGGAGTAGCTGAGTGGAAGATCACTAATCCAGTTCATCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTACTATCGCTATATGAGATTTTATCCTTCAGGCAGATTCCTTTATAAG....................................................................................................AATTCATCACAAAAAGTCAAAGATGTCGCGAAGTACCTGAACTTCCGTGCCTCAAAAGCTGATTGTGTTTTTAAGGGGAATTACACACTATCAGAGGATAAA.....................................................................................................................................................................................GTTGAAGCTGCTCTTTTGTACCCTGGAACGCGTCCAACTGTGTTGAGGTTCCGCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGGTACAACCCAAGGTGCTAATAACAGAATGGATCTACTTGCTCTTCTTACAAGTGGCGTGAATGATAATGAGGTTAATGGCCCGGATGAAGACATTCTTGGGGTTGTCGAGAGGTGGGAAGAGGATGAAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703849" ref_strand="+" ref_description="SGN-E703849 [FA22CE11]">
      <seq>cttcctttacacagtttttctcgggctggatatccaaattgtcaagcacaacattcaaaaccaagaaaaatggcctcagattacacagtggaacttgctgtggaactcgaaactgctgcacagttgagagcttctcagttcatttttcctcataggccatggcttgatttgtatgggattaatgttagacctgtcgctccttttggaagtgctagcagcaagcagtttgttgaccctgcattgatacaccgagtactacctgatgaactgctttttgagatcttgtcaaaaacgaccccatacaccttgggtaaggcagcttgtgtttgtcgaaagtggaggtatacaattcggaaccctgtattttggcgcaatgcatgcctaaaggcttggcaggtttctggattggtagaaaactataaggtccttcacttgaagtatgatggttcatggagaaaaatgtggcttttaagaccaaggattcgtacggatggtatttatgtcagtcgaaacacatatattcgtgcaggaatagctgagtggaagatcactaatccagttcatcttgtgtgttactatcgctatatgagattttatccttctggcaggttcctttataagaattcatcacaaaaagtcaaagatgtagcgaagtacctgaacttccgtgcctcaaaagctgattgtgtttttaaggggaattacactctatcagaggataaagttgaagctgctcttttgtacccgggaatgcgtccaactgtgttgagattccgcttaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="74048" stop="67025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73748" g_stop="73670" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73669" i_stop="72712" i_length="958">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72711" g_stop="72625" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="166" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72458" g_stop="72346" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="279" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70819" g_stop="70703" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="396" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70618" g_stop="70522" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="493" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70521" i_stop="69583" i_length="939">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69582" g_stop="69509" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="567" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69508" i_stop="67823" i_length="1686">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67822" g_stop="67769" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="621" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67768" i_stop="67669" i_length="100">
            <donor d_prob="0.438" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67668" g_stop="67567" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="723" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67566" i_stop="67386" i_length="181">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67385" g_stop="67327" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="782" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E703849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73748" e_stop="73670"/>
          <exon e_start="72711" e_stop="72625"/>
          <exon e_start="72458" e_stop="72346"/>
          <exon e_start="70819" e_stop="70703"/>
          <exon e_start="70618" e_stop="70522"/>
          <exon e_start="69582" e_stop="69509"/>
          <exon e_start="67822" e_stop="67769"/>
          <exon e_start="67668" e_stop="67567"/>
          <exon e_start="67385" e_stop="67327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTTACACAGTTTTTCTCGGGCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAGGTGAGCTATGAAATTCTCCAAAATGTGAACTTTTTTCTCTCTATTGTGTTCTAGAATTGGTTTTTACCTTCTGTGTATTTGTAAATTTAAATTCTTTGGTTGGAATCTTTCTTGGGTTTTGGGATATGGAAAGGGTTGTGTATGATTGAGAAGGAGTTGTATTGTAAGAAAGTTCAAATTTTTGGTTGGATTTTACTGGGATTTCATTAATTTCAGGGAGAAGTGAAAAAAATTGAATCTTTGTTTTAATATATGTGTTTTGTAGTGGTTGTTGCTTATTTGTATGTTCTTTTCAGCTTTTGTTTTATCGTATAGTGTATTGTTTTGTGTTCAATGGAGCTGATATAAAGCATGGTAGACAGGGTTTATATTACCAATAATGCTAGGTGATTAGTAGGTACGCAATGGATTAGTCACGGTGCGAAGGACCCCGGTTACTATTTTTAAGGAAAAAGGAGAAGATAATTGGGTCTGTTCATATCCAAATCTTTCATAGATAAAAGATTAGACTCGTCACTCGTCTATATTTTAGCTGGTCTGCAGTTAGATGAATCTTTCTGTTCTGCAGTCATTGCTAGTTTGAGAAGTTGGAACTACTGATTCAAGAGTGATTTTATGCAACTTGCCCGTTCTGTTGCAATAGTTTTCATTTATTGTAGGTTTGTTAGCTTGATCTTATTATCTTTTTAACTCATTGAGTAATGGAAGTATTTATTTCCAAATTATGTATCTATCTATCTATATATATGCATCTTTTTTGTCAATCTCTGTGTTTTTTGTCTCAGTTTACTGGTTTATGAATAAATCTGATTAGTCTTGTCAACTGGACATTGATCAGCTTTCGGACTTTTCTTCCTTGAGTTAATTTCAGAACTACAAATTGCCGCTTTTTGGTGTTTTCATGTTCTTCTTGTTCTGTATTTGTCATTATTTATTGATGATGGCTCATATCTTGCAGATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTGGTATTTTTCAAGCACTTTGTCATTGCTTACTTCAATTACCTTGCTCCTAGCAATTTGCTGCATAAAAGATTCATCATTTCTTGGATTCTTTATATTGACATTTGGTTTTGATGATGGAATTTTGTGGAACAGACTATTGTCAATTCAACTGCCTTTTTTCTTTCAGATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAGGTATGCCTTTGTGGATTTCAATTAATTTCCTCTGTAATTTTCTGATCAACATGTAAATATGTGGCAAGTGTTGGAAATGCTTTGTTACGATAGGAAGCTGAAGCATATTGATAAGACTTACAACAGAGCTGATTTTGCTAAACCAATTAATTGGTATCCAAAGTATGAACAATGTTTTTCTATAAATCAAAAGAAAATATTAACCAGAAAGTAAGGTATTTGTGGCTGTTTTGGGTTACATGTATATTTATGGTGAGGCGATATCTAACTACCCCCCTAAGAACAACTTTAATTTCATGCACATGCAAGAAGTTAGTGGATTCTACGTGGACACAAGCGTTGCTATTTTAACATCTACCTTGAGCCTTTTTCCCCTTCAATTCTTCTGAGGAGCATCCTTGGTAGCAAAGTTGGATGTCATCTCTGTCTTCTTCACAGACGAGGAACGTTGGACTCTATGATCTCATTACAGTAATCAAGTTGAGCTTTGCAACCAAGCTTAAATGTGACTGTTCCCTTTGATTCTTTCTCTGGATGGTTAGCTGGTTTTCACTGAGAATTTATTGGATTAGTCTTTAATATACTCCCACCTAGGGGTGTTTGTGGTTTGGTTTGGATCGGATATTGGTTAAAACCAAAACCAAACCAATCTAGTCGGGTTTTTAAATTTCTAAAACCAAACCAAACCAAATGAAAAAAATAACTATCGGTTTGGTTATTGACGGTTTGGTTCGGTTTTTCTGCATTTTTTCGGTTTGAAAGTAATAAATTTTTTAGGACATATGTATCTTGATTTAAAAAACATCTAGTACATGAATAATCCACAAGAGAGCTATTGTTGGTTCAATTAAGCAATTAAGCAATACTAGAGTTATCATTACCCGAACAAAGTTATTAAATTAAGAGAAAGTGTGTGACTATCTTATGAAAGGTATGGTAGGGAATAAATTTTGATGGAATTGGACTTAGGATTGTAATTAAGCTAAAATTTAAGTGTTAGGCTTGAGAAAATTGTAAACTTAAAGACTTAAGTTACTTAAAATTTAACACAGTATTTATATTTATTTATAAATAATATATAAATAATTATAAAATTTAAATTTCTAATTTATCGGTTTGGTTTGGTTATTTTTGCAGTTGTTTTTTTAGTAAAACCAAAACGAAACCAAACAGTATCGGTTTTCAAAATTTAAAAACCAAACCTAACCAAATCAAACCAAATATCGGGTTTTTTAATCGGTTTGGTTCGAATTACGGTTCGAATTGGTTGGTTAACCATAACCATGAACAGCCCTACTCCCACCCCATCTCTCTCCGGAGTTCTTTCTGTTTCCTTCCAATGGGTGAATTGAGGTTGCATATCTAGAGAACTGAAGGCAATCAAATGTAATGTCTTGATGTCTGCTTGAGAAAAATTATGCTGTTTCTAGATTGAAATTTAGCTTTTGCAGCCTTCCGTTCTAATCTTTATAGCTAAGGTGAGGGAACCGGAAACTTACTATCACTTCATGATTAATGTTGTGCAGATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAGGTACCAGGGACACTGGTTCTGGTTGTTCTATCGCGACTAGTGAGCTTTGTAAGTATCATTGACCATTGTGCCTCATTTTTGAAGGTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATGGTAAGATATAGTTTTTGATGAAGATGGTAAAATATTGCAATTACTTCGAAAAGTACTATAGTTACACCTGTTTCTATGACAAGAAGTTCCTTATTAATACCAAAAAAAATATCCTTATTAATTGTAAAATTCTTAAGGTAAGTTTTTATATCGGGAGGGAGAGAAGGCAGACGTGAGGGCATGTATAGGTGTTGGCTACTTCTTCTCGTTCGACATTGCAATAATATGGATTCTAATTCTTGATTTTGGTGACAAATGAAATGGACTTTTCTCAAGAAACTTGTGTGCCAATACTTTTAACTTCCATTTTTTACTTTTTGAATAGATAGGCGATCACGTATTGTAATTTCTTGGCTTTTCGTTATTACAATGCCAGATTTGATTATCCTCGAATCATTTCTGTTATTTGGTCATTGGATTAATACGAATTTTTTCTGTATTCAGGAAGAACCTCTAAGTTCTCAAGTTTTATGCCCTAATTGGTGCATCTGGAAAAAACAGTATTTGTTGATTGACATAGCTTTTCTATTAAATAAGAGTTGATAGTTGTTGAGCAAGCAAAAACAAGAGTTAAAAGTTGCTGATTTTCACCATTGTGAAAGTTTTGGTTGCTCCTAGTAGTATCATTAGAATTTTACTACTGAGCATTCAATATTTTGAAAGCTGGGGATTTTAAGTTTTTTCACGAAGTGTCTTAAAGCTGGGTATAGTGTATTTGGTAGGGATGTATGATTGTATTTTCCAAAATAGATTTCTCTGTGGACCACATACCAAGGTATTTGTCTTGGATTTACTTACGCCATCTGAGCCGGAGAACTAATTTTTTCCCATCTGGATGTTTTTGCCGTAGCCTGTAAAAAATTTGGATTATTTGTATCCATAAGTCTAAGTTGAAATATTTGAAGGTAGTAAGAAGTCTTAATTTATTTTTTTCTGCAGGTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGTATGTGTATTCTTATCCTCCACATAGTTAAACTTGTGACATCTTGGATGCATGTTTAGAGATAAGCTGTGCTGGCAAATGCTGCATAGTGCTTGTAGGAGAATGCAAATTATGCAATATGCTAATTCATCTTTTGCGTTGTATATTTCATGACGGAAGATAGTTCAGAAAAAATGACAAATTAGACAAATGTGACATCCTCTTTTCCTTAGGATAAGAGGTAACTTGTTCAACAGTGCCAGAGCTTTGTACCTTATTTATCGTGAAGGTTTTTGATCGGTTGGACCTTTGTTATACTCCCTTCCCCAAAAGAAGAAAAAGGAAAGGTCCTTTAGTATGGTTTGAATATGTAGATGCGAGATGTTATCTTTGAGGGAATCAATTTTTAATCATCGGTTGTAAATTATTGAAGATATTCTAATCAAGAAAAATATTTTACACCAACTGCAAAGAAGGAGTATGCATCTTTTAATGACAAAGATCGTTTTCCTGTACAACTACCCTTTTCTTTCTTTAGATCACATTTTTGAGGGGGTTGGGAGAGGGTGTTAAACAAGTGCTACTTATGGGGGTTGAACTTTTCCCCTATTTGGTGGAAGGTTGTGTGCACTCACCAAGTGAAGCTTCACATATACAAAGGAAGGTGAGGGTATATATGTGGATGCTAAGGGTGCTCTACGAATATCATGTATACTAAAACTATTTCTGCTACCAGCATTGCTAACATCCTTAACAAACCTTACTACTCAGAACGCCTTCAAATGAGAGACCCTTGCTTTATTTCCCACCTTCTTGTTAATATCTTGTGCCACTACCCTCTTTATCCAACCAAATATCATGACCCGCATTTAGGGATTCATGACCGGCACCAGGCACCTGACTAACTACCCTTATCAAGCAAACCACTAAACTAACAACTGGTTAACTTCGCAAACATATGAAAATACTGTAGAACTGGAAATTAAAGTCAAACATACTGCATAGAACTGAAATATCTTAGTATAAGTCTCAACTGTAGAGTGTAAAACAAACCATACTACAAACTGGCCAAGTCAAACTAGTCATGAGCCATCTAGAAAAAACACAACTGTTACATAGGTCCATGGGTCATACCTCAAAATAAAGGAAAGACTATAAAAGCAGATTGAAACTCTTACGCAAAGATGAATGGAAGATGTTGATGGGGGATGCCAGATTTAGCTGGTGATACGGAGCTTAGAGGTACCTGTCGCTGCACCCAAAAAATTAAGCAGCGAGTTGTAGCCACAATACTCAGCAAGTATCTGTGATAGCCTACAGAGCGGTGGAACAAGATTTAAATAAAACATGAGATGCACGAGTAGCAGAAATACGTTTTCATCGGAAAATTGATACTGAAAATTGAAAGCTGTAAAAGCATGGGATGCAGCTAAACAGTGCAAATAGACTTGCTCTGCCGGGGACTCCAGAAAACAGCAAGTTGTGGGGTACTGCAAGAAGACCTGTTCTGCTTGAGAGAGGATGTTTCCCTCGTCTGAGAGAACTGATATAAGTTGTAGGCTATTGTAAACAGAGTTTGGATTCTAATCAGTATGACATCTTTGAGTTGTTCAGTTTCCTCCCATTGCTTCTTTTCTTCACTTTGCATCCTATAGCAATTAGTATCAATGGCATTTTATAACATTGTCATCTTCTCTTTGATTGTAGGTGTGTTACTATCGCTATATGAGATTTTATCCTTCTGGCAGGTTCCTTTATAAGGTAGTAATCATTTGTTGTTCAGCTCGTGTGGCATACTAGATCTTTGCACGTTGTTCTTGCTATACCTAGTTTATAACTATTGTAGATTTCTTTTAACTAGAATTCATCACAAAAAGTCAAAGATGTAGCGAAGTACCTGAACTTCCGTGCCTCAAAAGCTGATTGTGTTTTTAAGGGGAATTACACTCTATCAGAGGATAAAGTAAGTCCAATTCTAATCTTCCTGTACAAGTCAATTTGTTTCTGGCAGCAATTTGGTTATATACGCTCAAATCAAAATAATGGTTCATTCCTCCTTGCTTAAGTTGATAATGCTTTTGGCGTTTAGTTGATATATGTGATGCTAATTTCGAACAGACAGCTCACTGCCTTCTCATTTGCAGGTTGAAGCTGCTCTTTTGTACCCGGGAATGCGTCCAACTGTGTTGAGATTCCGCTTAAG</genome_strand>
        <mrna_strand>CTTCCTTTACACAGTTTTTCTCGGGCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTG......................................................................................................................................................................ATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG....................................................................................GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTACTATCGCTATATGAGATTTTATCCTTCTGGCAGGTTCCTTTATAAG....................................................................................................AATTCATCACAAAAAGTCAAAGATGTAGCGAAGTACCTGAACTTCCGTGCCTCAAAAGCTGATTGTGTTTTTAAGGGGAATTACACTCTATCAGAGGATAAA.....................................................................................................................................................................................GTTGAAGCTGCTCTTTTGTACCCGGGAATGCGTCCAACTGTGTTGAGATTCCGCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480356" ref_strand="+" ref_description="SGN-E480356 [cSTD-13-L13]">
      <seq>atttcttcctggagtttccctggatatccaaattgtcaagcacaacattcaaaaccaagaaaaatgacttcagattacacagtggaacttgctgtggaactcgaaactgctgcacggttgagagcttctcagttcatttttcctcaaaggccatggcttgatttgtatgggatcaatgttagacctgtcgctccttttggaagtgctagtagcaagcagtttgttgatcctgcattgatacacagagtgctacctgatgaactgctttttgagatcttgtcaaaaacaaccccatacaccttgggtagggcagcttgtgtttgtcgaaagtggaggtatacaattcggaaccctgtattttggcgcaatgcatgcctaaaggcttggcaggtttctggattggtagaaaactataaggtccttcagttgaagtatgatggttcatggagaaaaatgtggcttttaagaccaaggattcgtacggatggtatttatgtcagtcgaaacacatatattcgtgcaggagtagctgagtggaagatcactaatccagttcatcttgtgtgttactatcgctatatgagattttatccttcangcagattcctttataagaattcatcacaaaaagtcaaagatgtcgcgaagtacctgaacttccgtgcctcaaagctgattgtgttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="74023" stop="67296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73734" g_stop="73670" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="73" r_length="61" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73669" i_stop="72712" i_length="958">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72711" g_stop="72625" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="160" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166">
            <donor d_prob="0.899" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72458" g_stop="72346" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="273" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70819" g_stop="70703" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="390" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70618" g_stop="70522" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="487" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70521" i_stop="69583" i_length="939">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69582" g_stop="69509" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="561" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69508" i_stop="67823" i_length="1686">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67822" g_stop="67769" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="615" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67768" i_stop="67669" i_length="100">
            <donor d_prob="0.438" d_score="0.94"/>
            <acceptor a_prob="0.775" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67668" g_stop="67596" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="687" r_length="72" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E480356" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73734" e_stop="73670"/>
          <exon e_start="72711" e_stop="72625"/>
          <exon e_start="72458" e_stop="72346"/>
          <exon e_start="70819" e_stop="70703"/>
          <exon e_start="70618" e_stop="70522"/>
          <exon e_start="69582" e_stop="69509"/>
          <exon e_start="67822" e_stop="67769"/>
          <exon e_start="67668" e_stop="67596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCGGGCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAGGTGAGCTATGAAATTCTCCAAAATGTGAACTTTTTTCTCTCTATTGTGTTCTAGAATTGGTTTTTACCTTCTGTGTATTTGTAAATTTAAATTCTTTGGTTGGAATCTTTCTTGGGTTTTGGGATATGGAAAGGGTTGTGTATGATTGAGAAGGAGTTGTATTGTAAGAAAGTTCAAATTTTTGGTTGGATTTTACTGGGATTTCATTAATTTCAGGGAGAAGTGAAAAAAATTGAATCTTTGTTTTAATATATGTGTTTTGTAGTGGTTGTTGCTTATTTGTATGTTCTTTTCAGCTTTTGTTTTATCGTATAGTGTATTGTTTTGTGTTCAATGGAGCTGATATAAAGCATGGTAGACAGGGTTTATATTACCAATAATGCTAGGTGATTAGTAGGTACGCAATGGATTAGTCACGGTGCGAAGGACCCCGGTTACTATTTTTAAGGAAAAAGGAGAAGATAATTGGGTCTGTTCATATCCAAATCTTTCATAGATAAAAGATTAGACTCGTCACTCGTCTATATTTTAGCTGGTCTGCAGTTAGATGAATCTTTCTGTTCTGCAGTCATTGCTAGTTTGAGAAGTTGGAACTACTGATTCAAGAGTGATTTTATGCAACTTGCCCGTTCTGTTGCAATAGTTTTCATTTATTGTAGGTTTGTTAGCTTGATCTTATTATCTTTTTAACTCATTGAGTAATGGAAGTATTTATTTCCAAATTATGTATCTATCTATCTATATATATGCATCTTTTTTGTCAATCTCTGTGTTTTTTGTCTCAGTTTACTGGTTTATGAATAAATCTGATTAGTCTTGTCAACTGGACATTGATCAGCTTTCGGACTTTTCTTCCTTGAGTTAATTTCAGAACTACAAATTGCCGCTTTTTGGTGTTTTCATGTTCTTCTTGTTCTGTATTTGTCATTATTTATTGATGATGGCTCATATCTTGCAGATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTGGTATTTTTCAAGCACTTTGTCATTGCTTACTTCAATTACCTTGCTCCTAGCAATTTGCTGCATAAAAGATTCATCATTTCTTGGATTCTTTATATTGACATTTGGTTTTGATGATGGAATTTTGTGGAACAGACTATTGTCAATTCAACTGCCTTTTTTCTTTCAGATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAGGTATGCCTTTGTGGATTTCAATTAATTTCCTCTGTAATTTTCTGATCAACATGTAAATATGTGGCAAGTGTTGGAAATGCTTTGTTACGATAGGAAGCTGAAGCATATTGATAAGACTTACAACAGAGCTGATTTTGCTAAACCAATTAATTGGTATCCAAAGTATGAACAATGTTTTTCTATAAATCAAAAGAAAATATTAACCAGAAAGTAAGGTATTTGTGGCTGTTTTGGGTTACATGTATATTTATGGTGAGGCGATATCTAACTACCCCCCTAAGAACAACTTTAATTTCATGCACATGCAAGAAGTTAGTGGATTCTACGTGGACACAAGCGTTGCTATTTTAACATCTACCTTGAGCCTTTTTCCCCTTCAATTCTTCTGAGGAGCATCCTTGGTAGCAAAGTTGGATGTCATCTCTGTCTTCTTCACAGACGAGGAACGTTGGACTCTATGATCTCATTACAGTAATCAAGTTGAGCTTTGCAACCAAGCTTAAATGTGACTGTTCCCTTTGATTCTTTCTCTGGATGGTTAGCTGGTTTTCACTGAGAATTTATTGGATTAGTCTTTAATATACTCCCACCTAGGGGTGTTTGTGGTTTGGTTTGGATCGGATATTGGTTAAAACCAAAACCAAACCAATCTAGTCGGGTTTTTAAATTTCTAAAACCAAACCAAACCAAATGAAAAAAATAACTATCGGTTTGGTTATTGACGGTTTGGTTCGGTTTTTCTGCATTTTTTCGGTTTGAAAGTAATAAATTTTTTAGGACATATGTATCTTGATTTAAAAAACATCTAGTACATGAATAATCCACAAGAGAGCTATTGTTGGTTCAATTAAGCAATTAAGCAATACTAGAGTTATCATTACCCGAACAAAGTTATTAAATTAAGAGAAAGTGTGTGACTATCTTATGAAAGGTATGGTAGGGAATAAATTTTGATGGAATTGGACTTAGGATTGTAATTAAGCTAAAATTTAAGTGTTAGGCTTGAGAAAATTGTAAACTTAAAGACTTAAGTTACTTAAAATTTAACACAGTATTTATATTTATTTATAAATAATATATAAATAATTATAAAATTTAAATTTCTAATTTATCGGTTTGGTTTGGTTATTTTTGCAGTTGTTTTTTTAGTAAAACCAAAACGAAACCAAACAGTATCGGTTTTCAAAATTTAAAAACCAAACCTAACCAAATCAAACCAAATATCGGGTTTTTTAATCGGTTTGGTTCGAATTACGGTTCGAATTGGTTGGTTAACCATAACCATGAACAGCCCTACTCCCACCCCATCTCTCTCCGGAGTTCTTTCTGTTTCCTTCCAATGGGTGAATTGAGGTTGCATATCTAGAGAACTGAAGGCAATCAAATGTAATGTCTTGATGTCTGCTTGAGAAAAATTATGCTGTTTCTAGATTGAAATTTAGCTTTTGCAGCCTTCCGTTCTAATCTTTATAGCTAAGGTGAGGGAACCGGAAACTTACTATCACTTCATGATTAATGTTGTGCAGATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAGGTACCAGGGACACTGGTTCTGGTTGTTCTATCGCGACTAGTGAGCTTTGTAAGTATCATTGACCATTGTGCCTCATTTTTGAAGGTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATGGTAAGATATAGTTTTTGATGAAGATGGTAAAATATTGCAATTACTTCGAAAAGTACTATAGTTACACCTGTTTCTATGACAAGAAGTTCCTTATTAATACCAAAAAAAATATCCTTATTAATTGTAAAATTCTTAAGGTAAGTTTTTATATCGGGAGGGAGAGAAGGCAGACGTGAGGGCATGTATAGGTGTTGGCTACTTCTTCTCGTTCGACATTGCAATAATATGGATTCTAATTCTTGATTTTGGTGACAAATGAAATGGACTTTTCTCAAGAAACTTGTGTGCCAATACTTTTAACTTCCATTTTTTACTTTTTGAATAGATAGGCGATCACGTATTGTAATTTCTTGGCTTTTCGTTATTACAATGCCAGATTTGATTATCCTCGAATCATTTCTGTTATTTGGTCATTGGATTAATACGAATTTTTTCTGTATTCAGGAAGAACCTCTAAGTTCTCAAGTTTTATGCCCTAATTGGTGCATCTGGAAAAAACAGTATTTGTTGATTGACATAGCTTTTCTATTAAATAAGAGTTGATAGTTGTTGAGCAAGCAAAAACAAGAGTTAAAAGTTGCTGATTTTCACCATTGTGAAAGTTTTGGTTGCTCCTAGTAGTATCATTAGAATTTTACTACTGAGCATTCAATATTTTGAAAGCTGGGGATTTTAAGTTTTTTCACGAAGTGTCTTAAAGCTGGGTATAGTGTATTTGGTAGGGATGTATGATTGTATTTTCCAAAATAGATTTCTCTGTGGACCACATACCAAGGTATTTGTCTTGGATTTACTTACGCCATCTGAGCCGGAGAACTAATTTTTTCCCATCTGGATGTTTTTGCCGTAGCCTGTAAAAAATTTGGATTATTTGTATCCATAAGTCTAAGTTGAAATATTTGAAGGTAGTAAGAAGTCTTAATTTATTTTTTTCTGCAGGTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGTATGTGTATTCTTATCCTCCACATAGTTAAACTTGTGACATCTTGGATGCATGTTTAGAGATAAGCTGTGCTGGCAAATGCTGCATAGTGCTTGTAGGAGAATGCAAATTATGCAATATGCTAATTCATCTTTTGCGTTGTATATTTCATGACGGAAGATAGTTCAGAAAAAATGACAAATTAGACAAATGTGACATCCTCTTTTCCTTAGGATAAGAGGTAACTTGTTCAACAGTGCCAGAGCTTTGTACCTTATTTATCGTGAAGGTTTTTGATCGGTTGGACCTTTGTTATACTCCCTTCCCCAAAAGAAGAAAAAGGAAAGGTCCTTTAGTATGGTTTGAATATGTAGATGCGAGATGTTATCTTTGAGGGAATCAATTTTTAATCATCGGTTGTAAATTATTGAAGATATTCTAATCAAGAAAAATATTTTACACCAACTGCAAAGAAGGAGTATGCATCTTTTAATGACAAAGATCGTTTTCCTGTACAACTACCCTTTTCTTTCTTTAGATCACATTTTTGAGGGGGTTGGGAGAGGGTGTTAAACAAGTGCTACTTATGGGGGTTGAACTTTTCCCCTATTTGGTGGAAGGTTGTGTGCACTCACCAAGTGAAGCTTCACATATACAAAGGAAGGTGAGGGTATATATGTGGATGCTAAGGGTGCTCTACGAATATCATGTATACTAAAACTATTTCTGCTACCAGCATTGCTAACATCCTTAACAAACCTTACTACTCAGAACGCCTTCAAATGAGAGACCCTTGCTTTATTTCCCACCTTCTTGTTAATATCTTGTGCCACTACCCTCTTTATCCAACCAAATATCATGACCCGCATTTAGGGATTCATGACCGGCACCAGGCACCTGACTAACTACCCTTATCAAGCAAACCACTAAACTAACAACTGGTTAACTTCGCAAACATATGAAAATACTGTAGAACTGGAAATTAAAGTCAAACATACTGCATAGAACTGAAATATCTTAGTATAAGTCTCAACTGTAGAGTGTAAAACAAACCATACTACAAACTGGCCAAGTCAAACTAGTCATGAGCCATCTAGAAAAAACACAACTGTTACATAGGTCCATGGGTCATACCTCAAAATAAAGGAAAGACTATAAAAGCAGATTGAAACTCTTACGCAAAGATGAATGGAAGATGTTGATGGGGGATGCCAGATTTAGCTGGTGATACGGAGCTTAGAGGTACCTGTCGCTGCACCCAAAAAATTAAGCAGCGAGTTGTAGCCACAATACTCAGCAAGTATCTGTGATAGCCTACAGAGCGGTGGAACAAGATTTAAATAAAACATGAGATGCACGAGTAGCAGAAATACGTTTTCATCGGAAAATTGATACTGAAAATTGAAAGCTGTAAAAGCATGGGATGCAGCTAAACAGTGCAAATAGACTTGCTCTGCCGGGGACTCCAGAAAACAGCAAGTTGTGGGGTACTGCAAGAAGACCTGTTCTGCTTGAGAGAGGATGTTTCCCTCGTCTGAGAGAACTGATATAAGTTGTAGGCTATTGTAAACAGAGTTTGGATTCTAATCAGTATGACATCTTTGAGTTGTTCAGTTTCCTCCCATTGCTTCTTTTCTTCACTTTGCATCCTATAGCAATTAGTATCAATGGCATTTTATAACATTGTCATCTTCTCTTTGATTGTAGGTGTGTTACTATCGCTATATGAGATTTTATCCTTCTGGCAGGTTCCTTTATAAGGTAGTAATCATTTGTTGTTCAGCTCGTGTGGCATACTAGATCTTTGCACGTTGTTCTTGCTATACCTAGTTTATAACTATTGTAGATTTCTTTTAACTAGAATTCATCACAAAAAGTCAAAGATGTAGCGAAGTACCTGAACTTCCGTGCCTCAAAAGCTGATTGTGTTTTTA</genome_strand>
        <mrna_strand>AGTTTC-C---CTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGACTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACGGTTGAGAGCTTCTCAGTTCATTTTTCCTCAAAGGCCATGGCTTG......................................................................................................................................................................ATTTGTATGGGATCAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGTAGCAAGCAGTTTGTTGATCCTGCATTGATACACAGAGTGCTACCTGATGAACTGCTTTTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTCAAAAACAACCCCATACACCTTGGGTAGGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG....................................................................................GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCAGTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAGTAGCTGAGTGGAAGATCACTAATCCAGTTCATCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTACTATCGCTATATGAGATTTTATCCTTCANGCAGATTCCTTTATAAG....................................................................................................AATTCATCACAAAAAGTCAAAGATGTCGCGAAGTACCTGAACTTCCGTGCCTC-AAAGCTGATTGTGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469318" ref_strand="+" ref_description="SGN-E469318 [cSTB-11-O15]">
      <seq>cctggatatccaaattgtcaagcacaacattcaaaaccaagaaaaatgacttcagattacacagtggaacttgctgtggaactcgaaactgctgcacggttgagagcttctcagttcatttttcctcaaaggccatggcttgatttgtatgggatcaatgttagacctgtcgctccttttggaagtgctagtagcaagcagtttgttgatcctgcattgatacacagagtgctacctgatgaactgctttttgagatcttgtcaaaaacaaccccatacaccttgggtagggcagcttgtgtttgtcgaaagtggaggtatacaattcggaaccctgtattttggcgcaatgcatgcctaaaggcttggcaggtttctggattggtagaaaactataaggtccttcagttgaagtatgatggttcatggagaaaaatgtggcttttaagaccaaggattcgtacggatggtatttatgtcagtcgaaacacatatattcgtgcaggagtagctgagtggaagatcactaatccagttcatcttgtgtgttactatcgctatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="74023" stop="67502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73724" g_stop="73670" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73669" i_stop="72712" i_length="958">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72711" g_stop="72625" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="142" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166">
            <donor d_prob="0.899" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72458" g_stop="72346" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="255" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70819" g_stop="70703" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="372" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70618" g_stop="70522" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="469" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70521" i_stop="69583" i_length="939">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69582" g_stop="69509" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="543" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69508" i_stop="67823" i_length="1686">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67822" g_stop="67802" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="564" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E469318" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73724" e_stop="73670"/>
          <exon e_start="72711" e_stop="72625"/>
          <exon e_start="72458" e_stop="72346"/>
          <exon e_start="70819" e_stop="70703"/>
          <exon e_start="70618" e_stop="70522"/>
          <exon e_start="69582" e_stop="69509"/>
          <exon e_start="67822" e_stop="67802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAGGTGAGCTATGAAATTCTCCAAAATGTGAACTTTTTTCTCTCTATTGTGTTCTAGAATTGGTTTTTACCTTCTGTGTATTTGTAAATTTAAATTCTTTGGTTGGAATCTTTCTTGGGTTTTGGGATATGGAAAGGGTTGTGTATGATTGAGAAGGAGTTGTATTGTAAGAAAGTTCAAATTTTTGGTTGGATTTTACTGGGATTTCATTAATTTCAGGGAGAAGTGAAAAAAATTGAATCTTTGTTTTAATATATGTGTTTTGTAGTGGTTGTTGCTTATTTGTATGTTCTTTTCAGCTTTTGTTTTATCGTATAGTGTATTGTTTTGTGTTCAATGGAGCTGATATAAAGCATGGTAGACAGGGTTTATATTACCAATAATGCTAGGTGATTAGTAGGTACGCAATGGATTAGTCACGGTGCGAAGGACCCCGGTTACTATTTTTAAGGAAAAAGGAGAAGATAATTGGGTCTGTTCATATCCAAATCTTTCATAGATAAAAGATTAGACTCGTCACTCGTCTATATTTTAGCTGGTCTGCAGTTAGATGAATCTTTCTGTTCTGCAGTCATTGCTAGTTTGAGAAGTTGGAACTACTGATTCAAGAGTGATTTTATGCAACTTGCCCGTTCTGTTGCAATAGTTTTCATTTATTGTAGGTTTGTTAGCTTGATCTTATTATCTTTTTAACTCATTGAGTAATGGAAGTATTTATTTCCAAATTATGTATCTATCTATCTATATATATGCATCTTTTTTGTCAATCTCTGTGTTTTTTGTCTCAGTTTACTGGTTTATGAATAAATCTGATTAGTCTTGTCAACTGGACATTGATCAGCTTTCGGACTTTTCTTCCTTGAGTTAATTTCAGAACTACAAATTGCCGCTTTTTGGTGTTTTCATGTTCTTCTTGTTCTGTATTTGTCATTATTTATTGATGATGGCTCATATCTTGCAGATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTGGTATTTTTCAAGCACTTTGTCATTGCTTACTTCAATTACCTTGCTCCTAGCAATTTGCTGCATAAAAGATTCATCATTTCTTGGATTCTTTATATTGACATTTGGTTTTGATGATGGAATTTTGTGGAACAGACTATTGTCAATTCAACTGCCTTTTTTCTTTCAGATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAGGTATGCCTTTGTGGATTTCAATTAATTTCCTCTGTAATTTTCTGATCAACATGTAAATATGTGGCAAGTGTTGGAAATGCTTTGTTACGATAGGAAGCTGAAGCATATTGATAAGACTTACAACAGAGCTGATTTTGCTAAACCAATTAATTGGTATCCAAAGTATGAACAATGTTTTTCTATAAATCAAAAGAAAATATTAACCAGAAAGTAAGGTATTTGTGGCTGTTTTGGGTTACATGTATATTTATGGTGAGGCGATATCTAACTACCCCCCTAAGAACAACTTTAATTTCATGCACATGCAAGAAGTTAGTGGATTCTACGTGGACACAAGCGTTGCTATTTTAACATCTACCTTGAGCCTTTTTCCCCTTCAATTCTTCTGAGGAGCATCCTTGGTAGCAAAGTTGGATGTCATCTCTGTCTTCTTCACAGACGAGGAACGTTGGACTCTATGATCTCATTACAGTAATCAAGTTGAGCTTTGCAACCAAGCTTAAATGTGACTGTTCCCTTTGATTCTTTCTCTGGATGGTTAGCTGGTTTTCACTGAGAATTTATTGGATTAGTCTTTAATATACTCCCACCTAGGGGTGTTTGTGGTTTGGTTTGGATCGGATATTGGTTAAAACCAAAACCAAACCAATCTAGTCGGGTTTTTAAATTTCTAAAACCAAACCAAACCAAATGAAAAAAATAACTATCGGTTTGGTTATTGACGGTTTGGTTCGGTTTTTCTGCATTTTTTCGGTTTGAAAGTAATAAATTTTTTAGGACATATGTATCTTGATTTAAAAAACATCTAGTACATGAATAATCCACAAGAGAGCTATTGTTGGTTCAATTAAGCAATTAAGCAATACTAGAGTTATCATTACCCGAACAAAGTTATTAAATTAAGAGAAAGTGTGTGACTATCTTATGAAAGGTATGGTAGGGAATAAATTTTGATGGAATTGGACTTAGGATTGTAATTAAGCTAAAATTTAAGTGTTAGGCTTGAGAAAATTGTAAACTTAAAGACTTAAGTTACTTAAAATTTAACACAGTATTTATATTTATTTATAAATAATATATAAATAATTATAAAATTTAAATTTCTAATTTATCGGTTTGGTTTGGTTATTTTTGCAGTTGTTTTTTTAGTAAAACCAAAACGAAACCAAACAGTATCGGTTTTCAAAATTTAAAAACCAAACCTAACCAAATCAAACCAAATATCGGGTTTTTTAATCGGTTTGGTTCGAATTACGGTTCGAATTGGTTGGTTAACCATAACCATGAACAGCCCTACTCCCACCCCATCTCTCTCCGGAGTTCTTTCTGTTTCCTTCCAATGGGTGAATTGAGGTTGCATATCTAGAGAACTGAAGGCAATCAAATGTAATGTCTTGATGTCTGCTTGAGAAAAATTATGCTGTTTCTAGATTGAAATTTAGCTTTTGCAGCCTTCCGTTCTAATCTTTATAGCTAAGGTGAGGGAACCGGAAACTTACTATCACTTCATGATTAATGTTGTGCAGATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAGGTACCAGGGACACTGGTTCTGGTTGTTCTATCGCGACTAGTGAGCTTTGTAAGTATCATTGACCATTGTGCCTCATTTTTGAAGGTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATGGTAAGATATAGTTTTTGATGAAGATGGTAAAATATTGCAATTACTTCGAAAAGTACTATAGTTACACCTGTTTCTATGACAAGAAGTTCCTTATTAATACCAAAAAAAATATCCTTATTAATTGTAAAATTCTTAAGGTAAGTTTTTATATCGGGAGGGAGAGAAGGCAGACGTGAGGGCATGTATAGGTGTTGGCTACTTCTTCTCGTTCGACATTGCAATAATATGGATTCTAATTCTTGATTTTGGTGACAAATGAAATGGACTTTTCTCAAGAAACTTGTGTGCCAATACTTTTAACTTCCATTTTTTACTTTTTGAATAGATAGGCGATCACGTATTGTAATTTCTTGGCTTTTCGTTATTACAATGCCAGATTTGATTATCCTCGAATCATTTCTGTTATTTGGTCATTGGATTAATACGAATTTTTTCTGTATTCAGGAAGAACCTCTAAGTTCTCAAGTTTTATGCCCTAATTGGTGCATCTGGAAAAAACAGTATTTGTTGATTGACATAGCTTTTCTATTAAATAAGAGTTGATAGTTGTTGAGCAAGCAAAAACAAGAGTTAAAAGTTGCTGATTTTCACCATTGTGAAAGTTTTGGTTGCTCCTAGTAGTATCATTAGAATTTTACTACTGAGCATTCAATATTTTGAAAGCTGGGGATTTTAAGTTTTTTCACGAAGTGTCTTAAAGCTGGGTATAGTGTATTTGGTAGGGATGTATGATTGTATTTTCCAAAATAGATTTCTCTGTGGACCACATACCAAGGTATTTGTCTTGGATTTACTTACGCCATCTGAGCCGGAGAACTAATTTTTTCCCATCTGGATGTTTTTGCCGTAGCCTGTAAAAAATTTGGATTATTTGTATCCATAAGTCTAAGTTGAAATATTTGAAGGTAGTAAGAAGTCTTAATTTATTTTTTTCTGCAGGTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGTATGTGTATTCTTATCCTCCACATAGTTAAACTTGTGACATCTTGGATGCATGTTTAGAGATAAGCTGTGCTGGCAAATGCTGCATAGTGCTTGTAGGAGAATGCAAATTATGCAATATGCTAATTCATCTTTTGCGTTGTATATTTCATGACGGAAGATAGTTCAGAAAAAATGACAAATTAGACAAATGTGACATCCTCTTTTCCTTAGGATAAGAGGTAACTTGTTCAACAGTGCCAGAGCTTTGTACCTTATTTATCGTGAAGGTTTTTGATCGGTTGGACCTTTGTTATACTCCCTTCCCCAAAAGAAGAAAAAGGAAAGGTCCTTTAGTATGGTTTGAATATGTAGATGCGAGATGTTATCTTTGAGGGAATCAATTTTTAATCATCGGTTGTAAATTATTGAAGATATTCTAATCAAGAAAAATATTTTACACCAACTGCAAAGAAGGAGTATGCATCTTTTAATGACAAAGATCGTTTTCCTGTACAACTACCCTTTTCTTTCTTTAGATCACATTTTTGAGGGGGTTGGGAGAGGGTGTTAAACAAGTGCTACTTATGGGGGTTGAACTTTTCCCCTATTTGGTGGAAGGTTGTGTGCACTCACCAAGTGAAGCTTCACATATACAAAGGAAGGTGAGGGTATATATGTGGATGCTAAGGGTGCTCTACGAATATCATGTATACTAAAACTATTTCTGCTACCAGCATTGCTAACATCCTTAACAAACCTTACTACTCAGAACGCCTTCAAATGAGAGACCCTTGCTTTATTTCCCACCTTCTTGTTAATATCTTGTGCCACTACCCTCTTTATCCAACCAAATATCATGACCCGCATTTAGGGATTCATGACCGGCACCAGGCACCTGACTAACTACCCTTATCAAGCAAACCACTAAACTAACAACTGGTTAACTTCGCAAACATATGAAAATACTGTAGAACTGGAAATTAAAGTCAAACATACTGCATAGAACTGAAATATCTTAGTATAAGTCTCAACTGTAGAGTGTAAAACAAACCATACTACAAACTGGCCAAGTCAAACTAGTCATGAGCCATCTAGAAAAAACACAACTGTTACATAGGTCCATGGGTCATACCTCAAAATAAAGGAAAGACTATAAAAGCAGATTGAAACTCTTACGCAAAGATGAATGGAAGATGTTGATGGGGGATGCCAGATTTAGCTGGTGATACGGAGCTTAGAGGTACCTGTCGCTGCACCCAAAAAATTAAGCAGCGAGTTGTAGCCACAATACTCAGCAAGTATCTGTGATAGCCTACAGAGCGGTGGAACAAGATTTAAATAAAACATGAGATGCACGAGTAGCAGAAATACGTTTTCATCGGAAAATTGATACTGAAAATTGAAAGCTGTAAAAGCATGGGATGCAGCTAAACAGTGCAAATAGACTTGCTCTGCCGGGGACTCCAGAAAACAGCAAGTTGTGGGGTACTGCAAGAAGACCTGTTCTGCTTGAGAGAGGATGTTTCCCTCGTCTGAGAGAACTGATATAAGTTGTAGGCTATTGTAAACAGAGTTTGGATTCTAATCAGTATGACATCTTTGAGTTGTTCAGTTTCCTCCCATTGCTTCTTTTCTTCACTTTGCATCCTATAGCAATTAGTATCAATGGCATTTTATAACATTGTCATCTTCTCTTTGATTGTAGGTGTGTTACTATCGCTATATG</genome_strand>
        <mrna_strand>CCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGACTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACGGTTGAGAGCTTCTCAGTTCATTTTTCCTCAAAGGCCATGGCTTG......................................................................................................................................................................ATTTGTATGGGATCAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGTAGCAAGCAGTTTGTTGATCCTGCATTGATACACAGAGTGCTACCTGATGAACTGCTTTTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTCAAAAACAACCCCATACACCTTGGGTAGGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG....................................................................................GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCAGTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAGTAGCTGAGTGGAAGATCACTAATCCAGTTCATCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTACTATCGCTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457802" ref_strand="+" ref_description="SGN-E457802 [cPRO-3-D6]">
      <seq>gtcaagcacaacattcaaaaccaagaaaaatgacttcagattacacagtggaacttgctgtggaactcgaaactgctgcacggttgagagcttctcagttcatttttcctcaaaggccatggcttgatttgtatgggatcaatgttagacctgtctctccttttggaagtgctagtagcaagcagtttgttgatcctgcattgatacacagagtgctacctgatgaactgctttttgagatcttgtcaaaaacaaccccatacaccttgggtagggcagcttgtgtttgtcgaaagtggaggtatacaattcggaaccctgtattttggcgcaatgcatgcctaaaggcttggcaggtttctggattggtagaaaactataaggtccttcagttgaagtatgatggttcatggagaaaaatgtggcttttaagaccaaggattcgtacggatggtatttatgtcagtcgaaacacatatattcgtgcaggagtagctgagtggaagatcactaatccagntcatcttgtgtgttactatcgctatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="74008" stop="67502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73708" g_stop="73670" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73669" i_stop="72712" i_length="958">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72711" g_stop="72625" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="126" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166">
            <donor d_prob="0.899" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72458" g_stop="72346" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="239" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70819" g_stop="70703" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="356" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70618" g_stop="70522" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="453" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70521" i_stop="69583" i_length="939">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69582" g_stop="69509" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="527" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69508" i_stop="67823" i_length="1686">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67822" g_stop="67802" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="548" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E457802" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73708" e_stop="73670"/>
          <exon e_start="72711" e_stop="72625"/>
          <exon e_start="72458" e_stop="72346"/>
          <exon e_start="70819" e_stop="70703"/>
          <exon e_start="70618" e_stop="70522"/>
          <exon e_start="69582" e_stop="69509"/>
          <exon e_start="67822" e_stop="67802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAGGTGAGCTATGAAATTCTCCAAAATGTGAACTTTTTTCTCTCTATTGTGTTCTAGAATTGGTTTTTACCTTCTGTGTATTTGTAAATTTAAATTCTTTGGTTGGAATCTTTCTTGGGTTTTGGGATATGGAAAGGGTTGTGTATGATTGAGAAGGAGTTGTATTGTAAGAAAGTTCAAATTTTTGGTTGGATTTTACTGGGATTTCATTAATTTCAGGGAGAAGTGAAAAAAATTGAATCTTTGTTTTAATATATGTGTTTTGTAGTGGTTGTTGCTTATTTGTATGTTCTTTTCAGCTTTTGTTTTATCGTATAGTGTATTGTTTTGTGTTCAATGGAGCTGATATAAAGCATGGTAGACAGGGTTTATATTACCAATAATGCTAGGTGATTAGTAGGTACGCAATGGATTAGTCACGGTGCGAAGGACCCCGGTTACTATTTTTAAGGAAAAAGGAGAAGATAATTGGGTCTGTTCATATCCAAATCTTTCATAGATAAAAGATTAGACTCGTCACTCGTCTATATTTTAGCTGGTCTGCAGTTAGATGAATCTTTCTGTTCTGCAGTCATTGCTAGTTTGAGAAGTTGGAACTACTGATTCAAGAGTGATTTTATGCAACTTGCCCGTTCTGTTGCAATAGTTTTCATTTATTGTAGGTTTGTTAGCTTGATCTTATTATCTTTTTAACTCATTGAGTAATGGAAGTATTTATTTCCAAATTATGTATCTATCTATCTATATATATGCATCTTTTTTGTCAATCTCTGTGTTTTTTGTCTCAGTTTACTGGTTTATGAATAAATCTGATTAGTCTTGTCAACTGGACATTGATCAGCTTTCGGACTTTTCTTCCTTGAGTTAATTTCAGAACTACAAATTGCCGCTTTTTGGTGTTTTCATGTTCTTCTTGTTCTGTATTTGTCATTATTTATTGATGATGGCTCATATCTTGCAGATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTGGTATTTTTCAAGCACTTTGTCATTGCTTACTTCAATTACCTTGCTCCTAGCAATTTGCTGCATAAAAGATTCATCATTTCTTGGATTCTTTATATTGACATTTGGTTTTGATGATGGAATTTTGTGGAACAGACTATTGTCAATTCAACTGCCTTTTTTCTTTCAGATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAGGTATGCCTTTGTGGATTTCAATTAATTTCCTCTGTAATTTTCTGATCAACATGTAAATATGTGGCAAGTGTTGGAAATGCTTTGTTACGATAGGAAGCTGAAGCATATTGATAAGACTTACAACAGAGCTGATTTTGCTAAACCAATTAATTGGTATCCAAAGTATGAACAATGTTTTTCTATAAATCAAAAGAAAATATTAACCAGAAAGTAAGGTATTTGTGGCTGTTTTGGGTTACATGTATATTTATGGTGAGGCGATATCTAACTACCCCCCTAAGAACAACTTTAATTTCATGCACATGCAAGAAGTTAGTGGATTCTACGTGGACACAAGCGTTGCTATTTTAACATCTACCTTGAGCCTTTTTCCCCTTCAATTCTTCTGAGGAGCATCCTTGGTAGCAAAGTTGGATGTCATCTCTGTCTTCTTCACAGACGAGGAACGTTGGACTCTATGATCTCATTACAGTAATCAAGTTGAGCTTTGCAACCAAGCTTAAATGTGACTGTTCCCTTTGATTCTTTCTCTGGATGGTTAGCTGGTTTTCACTGAGAATTTATTGGATTAGTCTTTAATATACTCCCACCTAGGGGTGTTTGTGGTTTGGTTTGGATCGGATATTGGTTAAAACCAAAACCAAACCAATCTAGTCGGGTTTTTAAATTTCTAAAACCAAACCAAACCAAATGAAAAAAATAACTATCGGTTTGGTTATTGACGGTTTGGTTCGGTTTTTCTGCATTTTTTCGGTTTGAAAGTAATAAATTTTTTAGGACATATGTATCTTGATTTAAAAAACATCTAGTACATGAATAATCCACAAGAGAGCTATTGTTGGTTCAATTAAGCAATTAAGCAATACTAGAGTTATCATTACCCGAACAAAGTTATTAAATTAAGAGAAAGTGTGTGACTATCTTATGAAAGGTATGGTAGGGAATAAATTTTGATGGAATTGGACTTAGGATTGTAATTAAGCTAAAATTTAAGTGTTAGGCTTGAGAAAATTGTAAACTTAAAGACTTAAGTTACTTAAAATTTAACACAGTATTTATATTTATTTATAAATAATATATAAATAATTATAAAATTTAAATTTCTAATTTATCGGTTTGGTTTGGTTATTTTTGCAGTTGTTTTTTTAGTAAAACCAAAACGAAACCAAACAGTATCGGTTTTCAAAATTTAAAAACCAAACCTAACCAAATCAAACCAAATATCGGGTTTTTTAATCGGTTTGGTTCGAATTACGGTTCGAATTGGTTGGTTAACCATAACCATGAACAGCCCTACTCCCACCCCATCTCTCTCCGGAGTTCTTTCTGTTTCCTTCCAATGGGTGAATTGAGGTTGCATATCTAGAGAACTGAAGGCAATCAAATGTAATGTCTTGATGTCTGCTTGAGAAAAATTATGCTGTTTCTAGATTGAAATTTAGCTTTTGCAGCCTTCCGTTCTAATCTTTATAGCTAAGGTGAGGGAACCGGAAACTTACTATCACTTCATGATTAATGTTGTGCAGATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAGGTACCAGGGACACTGGTTCTGGTTGTTCTATCGCGACTAGTGAGCTTTGTAAGTATCATTGACCATTGTGCCTCATTTTTGAAGGTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATGGTAAGATATAGTTTTTGATGAAGATGGTAAAATATTGCAATTACTTCGAAAAGTACTATAGTTACACCTGTTTCTATGACAAGAAGTTCCTTATTAATACCAAAAAAAATATCCTTATTAATTGTAAAATTCTTAAGGTAAGTTTTTATATCGGGAGGGAGAGAAGGCAGACGTGAGGGCATGTATAGGTGTTGGCTACTTCTTCTCGTTCGACATTGCAATAATATGGATTCTAATTCTTGATTTTGGTGACAAATGAAATGGACTTTTCTCAAGAAACTTGTGTGCCAATACTTTTAACTTCCATTTTTTACTTTTTGAATAGATAGGCGATCACGTATTGTAATTTCTTGGCTTTTCGTTATTACAATGCCAGATTTGATTATCCTCGAATCATTTCTGTTATTTGGTCATTGGATTAATACGAATTTTTTCTGTATTCAGGAAGAACCTCTAAGTTCTCAAGTTTTATGCCCTAATTGGTGCATCTGGAAAAAACAGTATTTGTTGATTGACATAGCTTTTCTATTAAATAAGAGTTGATAGTTGTTGAGCAAGCAAAAACAAGAGTTAAAAGTTGCTGATTTTCACCATTGTGAAAGTTTTGGTTGCTCCTAGTAGTATCATTAGAATTTTACTACTGAGCATTCAATATTTTGAAAGCTGGGGATTTTAAGTTTTTTCACGAAGTGTCTTAAAGCTGGGTATAGTGTATTTGGTAGGGATGTATGATTGTATTTTCCAAAATAGATTTCTCTGTGGACCACATACCAAGGTATTTGTCTTGGATTTACTTACGCCATCTGAGCCGGAGAACTAATTTTTTCCCATCTGGATGTTTTTGCCGTAGCCTGTAAAAAATTTGGATTATTTGTATCCATAAGTCTAAGTTGAAATATTTGAAGGTAGTAAGAAGTCTTAATTTATTTTTTTCTGCAGGTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGTATGTGTATTCTTATCCTCCACATAGTTAAACTTGTGACATCTTGGATGCATGTTTAGAGATAAGCTGTGCTGGCAAATGCTGCATAGTGCTTGTAGGAGAATGCAAATTATGCAATATGCTAATTCATCTTTTGCGTTGTATATTTCATGACGGAAGATAGTTCAGAAAAAATGACAAATTAGACAAATGTGACATCCTCTTTTCCTTAGGATAAGAGGTAACTTGTTCAACAGTGCCAGAGCTTTGTACCTTATTTATCGTGAAGGTTTTTGATCGGTTGGACCTTTGTTATACTCCCTTCCCCAAAAGAAGAAAAAGGAAAGGTCCTTTAGTATGGTTTGAATATGTAGATGCGAGATGTTATCTTTGAGGGAATCAATTTTTAATCATCGGTTGTAAATTATTGAAGATATTCTAATCAAGAAAAATATTTTACACCAACTGCAAAGAAGGAGTATGCATCTTTTAATGACAAAGATCGTTTTCCTGTACAACTACCCTTTTCTTTCTTTAGATCACATTTTTGAGGGGGTTGGGAGAGGGTGTTAAACAAGTGCTACTTATGGGGGTTGAACTTTTCCCCTATTTGGTGGAAGGTTGTGTGCACTCACCAAGTGAAGCTTCACATATACAAAGGAAGGTGAGGGTATATATGTGGATGCTAAGGGTGCTCTACGAATATCATGTATACTAAAACTATTTCTGCTACCAGCATTGCTAACATCCTTAACAAACCTTACTACTCAGAACGCCTTCAAATGAGAGACCCTTGCTTTATTTCCCACCTTCTTGTTAATATCTTGTGCCACTACCCTCTTTATCCAACCAAATATCATGACCCGCATTTAGGGATTCATGACCGGCACCAGGCACCTGACTAACTACCCTTATCAAGCAAACCACTAAACTAACAACTGGTTAACTTCGCAAACATATGAAAATACTGTAGAACTGGAAATTAAAGTCAAACATACTGCATAGAACTGAAATATCTTAGTATAAGTCTCAACTGTAGAGTGTAAAACAAACCATACTACAAACTGGCCAAGTCAAACTAGTCATGAGCCATCTAGAAAAAACACAACTGTTACATAGGTCCATGGGTCATACCTCAAAATAAAGGAAAGACTATAAAAGCAGATTGAAACTCTTACGCAAAGATGAATGGAAGATGTTGATGGGGGATGCCAGATTTAGCTGGTGATACGGAGCTTAGAGGTACCTGTCGCTGCACCCAAAAAATTAAGCAGCGAGTTGTAGCCACAATACTCAGCAAGTATCTGTGATAGCCTACAGAGCGGTGGAACAAGATTTAAATAAAACATGAGATGCACGAGTAGCAGAAATACGTTTTCATCGGAAAATTGATACTGAAAATTGAAAGCTGTAAAAGCATGGGATGCAGCTAAACAGTGCAAATAGACTTGCTCTGCCGGGGACTCCAGAAAACAGCAAGTTGTGGGGTACTGCAAGAAGACCTGTTCTGCTTGAGAGAGGATGTTTCCCTCGTCTGAGAGAACTGATATAAGTTGTAGGCTATTGTAAACAGAGTTTGGATTCTAATCAGTATGACATCTTTGAGTTGTTCAGTTTCCTCCCATTGCTTCTTTTCTTCACTTTGCATCCTATAGCAATTAGTATCAATGGCATTTTATAACATTGTCATCTTCTCTTTGATTGTAGGTGTGTTACTATCGCTATATG</genome_strand>
        <mrna_strand>GTCAAGCACAACATTCAAAACCAAGAAAAATGACTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACGGTTGAGAGCTTCTCAGTTCATTTTTCCTCAAAGGCCATGGCTTG......................................................................................................................................................................ATTTGTATGGGATCAATGTTAGACCTGTCTCTCCTTTTGGAAGTGCTAGTAGCAAGCAGTTTGTTGATCCTGCATTGATACACAGAGTGCTACCTGATGAACTGCTTTTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTCAAAAACAACCCCATACACCTTGGGTAGGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG....................................................................................GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCAGTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAGTAGCTGAGTGGAAGATCACTAATCCAGNTCATCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTACTATCGCTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562757" ref_strand="+" ref_description="SGN-E562757 [1197]">
      <seq>ccccggctgcagtgggggttgaacttttcacctactttgtggaaggttgtgcgcactcaccaagtgaagcttcacatctacaaaggaaggtgagggtatatatgtggatggtaagggtgctctacaaatatatcatgtttactaaaaccatttctgctaccagcatttctaacatccttaacaaactttactactcagaacgccatcaaatgagagacccttgctttgtttcccaccttcttattaatatcttgtgccactaccctctttatccaaccaaatgtcacgacccgcatttagggattcactgaccggcaccaggcacctgactaacgtaccctatcaagcaaaccacgtaaactaacaactggttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="69242" stop="68282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68955" g_stop="68582" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E562757" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E562757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68955" e_stop="68582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGCTACTTATGGGGGTTGAACTTTTCCCCTATTTGGTGGAAGGTTGTGTGCACTCACCAAGTGAAGCTTCACATATACAAAGGAAGGTGAGGGTATATATGTGGATGCTAAGGGTGCTCTAC-GA-ATATCATGTATACTAAAACTATTTCTGCTACCAGCATTGCTAACATCCTTAACAAACCTTACTACTCAGAACGCCTTCAAATGAGAGACCCTTGCTTTATTTCCCACCTTCTTGTTAATATCTTGTGCCACTACCCTCTTTATCCAACCAAATATCATGACCCGCATTTAGGGATTCA-TGACCGGCACCAGGCACCTGACTAACTACCCTTATCAAGCAAACCAC-TAAACTAACAACTGGTTAACT</genome_strand>
        <mrna_strand>CCCCGGCTGC-AGTGGGGGTTGAACTTTTCACCTACTTTGTGGAAGGTTGTGCGCACTCACCAAGTGAAGCTTCACATCTACAAAGGAAGGTGAGGGTATATATGTGGATGGTAAGGGTGCTCTACAAATATATCATGTTTACTAAAACCATTTCTGCTACCAGCATTTCTAACATCCTTAACAAACTTTACTACTCAGAACGCCATCAAATGAGAGACCCTTGCTTTGTTTCCCACCTTCTTATTAATATCTTGTGCCACTACCCTCTTTATCCAACCAAATGTCACGACCCGCATTTAGGGATTCACTGACCGGCACCAGGCACCTGACTAACGTACCCTATCAAGCAAACCACGTAAACTAACAACTGGTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254881" ref_strand="+" ref_description="SGN-E254881 [cLEG-33-L20]">
      <seq>ttggaagtgctagcagcaagcagtttgttgaccctgcattgatacaccgagtactacctgatgaactgctttttgagatcttgtcaaaaacgaccccatacaccttgggtaaggcagcttgtgtttgtcgaaagtggaggtatacaattcggaaccctgtattttggcgcaatgcatgcctaaaggcttggcaggtttctggattggtagaaaactataaggtccttcacttgaagtatgatggttcatggagaaaaatgtggcttttaagaccaaggattcgtacggatggtatttatgtcagtcgaaacacatatattcgtgcaggaatagctgagtggaagatcactaatccagttcatcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="72722" stop="69207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72422" g_stop="72346" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70819" g_stop="70703" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="194" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70618" g_stop="70522" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="291" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70521" i_stop="69583" i_length="939">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69582" g_stop="69507" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="367" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E254881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72422" e_stop="72346"/>
          <exon e_start="70819" e_stop="70703"/>
          <exon e_start="70618" e_stop="70522"/>
          <exon e_start="69582" e_stop="69507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAGGTATGCCTTTGTGGATTTCAATTAATTTCCTCTGTAATTTTCTGATCAACATGTAAATATGTGGCAAGTGTTGGAAATGCTTTGTTACGATAGGAAGCTGAAGCATATTGATAAGACTTACAACAGAGCTGATTTTGCTAAACCAATTAATTGGTATCCAAAGTATGAACAATGTTTTTCTATAAATCAAAAGAAAATATTAACCAGAAAGTAAGGTATTTGTGGCTGTTTTGGGTTACATGTATATTTATGGTGAGGCGATATCTAACTACCCCCCTAAGAACAACTTTAATTTCATGCACATGCAAGAAGTTAGTGGATTCTACGTGGACACAAGCGTTGCTATTTTAACATCTACCTTGAGCCTTTTTCCCCTTCAATTCTTCTGAGGAGCATCCTTGGTAGCAAAGTTGGATGTCATCTCTGTCTTCTTCACAGACGAGGAACGTTGGACTCTATGATCTCATTACAGTAATCAAGTTGAGCTTTGCAACCAAGCTTAAATGTGACTGTTCCCTTTGATTCTTTCTCTGGATGGTTAGCTGGTTTTCACTGAGAATTTATTGGATTAGTCTTTAATATACTCCCACCTAGGGGTGTTTGTGGTTTGGTTTGGATCGGATATTGGTTAAAACCAAAACCAAACCAATCTAGTCGGGTTTTTAAATTTCTAAAACCAAACCAAACCAAATGAAAAAAATAACTATCGGTTTGGTTATTGACGGTTTGGTTCGGTTTTTCTGCATTTTTTCGGTTTGAAAGTAATAAATTTTTTAGGACATATGTATCTTGATTTAAAAAACATCTAGTACATGAATAATCCACAAGAGAGCTATTGTTGGTTCAATTAAGCAATTAAGCAATACTAGAGTTATCATTACCCGAACAAAGTTATTAAATTAAGAGAAAGTGTGTGACTATCTTATGAAAGGTATGGTAGGGAATAAATTTTGATGGAATTGGACTTAGGATTGTAATTAAGCTAAAATTTAAGTGTTAGGCTTGAGAAAATTGTAAACTTAAAGACTTAAGTTACTTAAAATTTAACACAGTATTTATATTTATTTATAAATAATATATAAATAATTATAAAATTTAAATTTCTAATTTATCGGTTTGGTTTGGTTATTTTTGCAGTTGTTTTTTTAGTAAAACCAAAACGAAACCAAACAGTATCGGTTTTCAAAATTTAAAAACCAAACCTAACCAAATCAAACCAAATATCGGGTTTTTTAATCGGTTTGGTTCGAATTACGGTTCGAATTGGTTGGTTAACCATAACCATGAACAGCCCTACTCCCACCCCATCTCTCTCCGGAGTTCTTTCTGTTTCCTTCCAATGGGTGAATTGAGGTTGCATATCTAGAGAACTGAAGGCAATCAAATGTAATGTCTTGATGTCTGCTTGAGAAAAATTATGCTGTTTCTAGATTGAAATTTAGCTTTTGCAGCCTTCCGTTCTAATCTTTATAGCTAAGGTGAGGGAACCGGAAACTTACTATCACTTCATGATTAATGTTGTGCAGATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAGGTACCAGGGACACTGGTTCTGGTTGTTCTATCGCGACTAGTGAGCTTTGTAAGTATCATTGACCATTGTGCCTCATTTTTGAAGGTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATGGTAAGATATAGTTTTTGATGAAGATGGTAAAATATTGCAATTACTTCGAAAAGTACTATAGTTACACCTGTTTCTATGACAAGAAGTTCCTTATTAATACCAAAAAAAATATCCTTATTAATTGTAAAATTCTTAAGGTAAGTTTTTATATCGGGAGGGAGAGAAGGCAGACGTGAGGGCATGTATAGGTGTTGGCTACTTCTTCTCGTTCGACATTGCAATAATATGGATTCTAATTCTTGATTTTGGTGACAAATGAAATGGACTTTTCTCAAGAAACTTGTGTGCCAATACTTTTAACTTCCATTTTTTACTTTTTGAATAGATAGGCGATCACGTATTGTAATTTCTTGGCTTTTCGTTATTACAATGCCAGATTTGATTATCCTCGAATCATTTCTGTTATTTGGTCATTGGATTAATACGAATTTTTTCTGTATTCAGGAAGAACCTCTAAGTTCTCAAGTTTTATGCCCTAATTGGTGCATCTGGAAAAAACAGTATTTGTTGATTGACATAGCTTTTCTATTAAATAAGAGTTGATAGTTGTTGAGCAAGCAAAAACAAGAGTTAAAAGTTGCTGATTTTCACCATTGTGAAAGTTTTGGTTGCTCCTAGTAGTATCATTAGAATTTTACTACTGAGCATTCAATATTTTGAAAGCTGGGGATTTTAAGTTTTTTCACGAAGTGTCTTAAAGCTGGGTATAGTGTATTTGGTAGGGATGTATGATTGTATTTTCCAAAATAGATTTCTCTGTGGACCACATACCAAGGTATTTGTCTTGGATTTACTTACGCCATCTGAGCCGGAGAACTAATTTTTTCCCATCTGGATGTTTTTGCCGTAGCCTGTAAAAAATTTGGATTATTTGTATCCATAAGTCTAAGTTGAAATATTTGAAGGTAGTAAGAAGTCTTAATTTATTTTTTTCTGCAGGTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGT</genome_strand>
        <mrna_strand>TTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG....................................................................................GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468606" ref_strand="+" ref_description="SGN-E468606 [cSTB-5-G14]">
      <seq>gtttccctggatatgcaaattgtcaagcacaacattcaaaaccaagaaaaatgacttcagtggaacttgctgtggaactcgaaactgctgcacggttgagagcttctcagttcatttttcctcaaaggccatggcttgatttgtatgggatcaatgttagacctgtcgctccttttggaagtgctagtagcaagcagtttgttgatcctgcattgatacacagagtgctacctgatgaactgctttttgagatcttgtcaaaaacaaccccatacaccttgggtagggcagcttgtgtttgtcgaaagtggaggtatacaattcggaaccctgtattttggcgcaatgcatgcctaaaggcttggcaggtttctggattggtagaaaactataaggtccttcagttgaagtatgatggttcatggagaaaaatgtggcttttaagaccaaggattcgtacggatggtatttatgtcagtcgaaacacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="74023" stop="69258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73729" g_stop="73670" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73669" i_stop="72703" i_length="967">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.702" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72702" g_stop="72625" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166">
            <donor d_prob="0.899" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72458" g_stop="72346" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="251" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70819" g_stop="70703" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="368" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70618" g_stop="70522" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="465" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70521" i_stop="69583" i_length="939">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69582" g_stop="69558" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="490" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E468606" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73729" e_stop="73670"/>
          <exon e_start="72702" e_stop="72625"/>
          <exon e_start="72458" e_stop="72346"/>
          <exon e_start="70819" e_stop="70703"/>
          <exon e_start="70618" e_stop="70522"/>
          <exon e_start="69582" e_stop="69558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGGCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAGGTGAGCTATGAAATTCTCCAAAATGTGAACTTTTTTCTCTCTATTGTGTTCTAGAATTGGTTTTTACCTTCTGTGTATTTGTAAATTTAAATTCTTTGGTTGGAATCTTTCTTGGGTTTTGGGATATGGAAAGGGTTGTGTATGATTGAGAAGGAGTTGTATTGTAAGAAAGTTCAAATTTTTGGTTGGATTTTACTGGGATTTCATTAATTTCAGGGAGAAGTGAAAAAAATTGAATCTTTGTTTTAATATATGTGTTTTGTAGTGGTTGTTGCTTATTTGTATGTTCTTTTCAGCTTTTGTTTTATCGTATAGTGTATTGTTTTGTGTTCAATGGAGCTGATATAAAGCATGGTAGACAGGGTTTATATTACCAATAATGCTAGGTGATTAGTAGGTACGCAATGGATTAGTCACGGTGCGAAGGACCCCGGTTACTATTTTTAAGGAAAAAGGAGAAGATAATTGGGTCTGTTCATATCCAAATCTTTCATAGATAAAAGATTAGACTCGTCACTCGTCTATATTTTAGCTGGTCTGCAGTTAGATGAATCTTTCTGTTCTGCAGTCATTGCTAGTTTGAGAAGTTGGAACTACTGATTCAAGAGTGATTTTATGCAACTTGCCCGTTCTGTTGCAATAGTTTTCATTTATTGTAGGTTTGTTAGCTTGATCTTATTATCTTTTTAACTCATTGAGTAATGGAAGTATTTATTTCCAAATTATGTATCTATCTATCTATATATATGCATCTTTTTTGTCAATCTCTGTGTTTTTTGTCTCAGTTTACTGGTTTATGAATAAATCTGATTAGTCTTGTCAACTGGACATTGATCAGCTTTCGGACTTTTCTTCCTTGAGTTAATTTCAGAACTACAAATTGCCGCTTTTTGGTGTTTTCATGTTCTTCTTGTTCTGTATTTGTCATTATTTATTGATGATGGCTCATATCTTGCAGATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTGGTATTTTTCAAGCACTTTGTCATTGCTTACTTCAATTACCTTGCTCCTAGCAATTTGCTGCATAAAAGATTCATCATTTCTTGGATTCTTTATATTGACATTTGGTTTTGATGATGGAATTTTGTGGAACAGACTATTGTCAATTCAACTGCCTTTTTTCTTTCAGATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAGGTATGCCTTTGTGGATTTCAATTAATTTCCTCTGTAATTTTCTGATCAACATGTAAATATGTGGCAAGTGTTGGAAATGCTTTGTTACGATAGGAAGCTGAAGCATATTGATAAGACTTACAACAGAGCTGATTTTGCTAAACCAATTAATTGGTATCCAAAGTATGAACAATGTTTTTCTATAAATCAAAAGAAAATATTAACCAGAAAGTAAGGTATTTGTGGCTGTTTTGGGTTACATGTATATTTATGGTGAGGCGATATCTAACTACCCCCCTAAGAACAACTTTAATTTCATGCACATGCAAGAAGTTAGTGGATTCTACGTGGACACAAGCGTTGCTATTTTAACATCTACCTTGAGCCTTTTTCCCCTTCAATTCTTCTGAGGAGCATCCTTGGTAGCAAAGTTGGATGTCATCTCTGTCTTCTTCACAGACGAGGAACGTTGGACTCTATGATCTCATTACAGTAATCAAGTTGAGCTTTGCAACCAAGCTTAAATGTGACTGTTCCCTTTGATTCTTTCTCTGGATGGTTAGCTGGTTTTCACTGAGAATTTATTGGATTAGTCTTTAATATACTCCCACCTAGGGGTGTTTGTGGTTTGGTTTGGATCGGATATTGGTTAAAACCAAAACCAAACCAATCTAGTCGGGTTTTTAAATTTCTAAAACCAAACCAAACCAAATGAAAAAAATAACTATCGGTTTGGTTATTGACGGTTTGGTTCGGTTTTTCTGCATTTTTTCGGTTTGAAAGTAATAAATTTTTTAGGACATATGTATCTTGATTTAAAAAACATCTAGTACATGAATAATCCACAAGAGAGCTATTGTTGGTTCAATTAAGCAATTAAGCAATACTAGAGTTATCATTACCCGAACAAAGTTATTAAATTAAGAGAAAGTGTGTGACTATCTTATGAAAGGTATGGTAGGGAATAAATTTTGATGGAATTGGACTTAGGATTGTAATTAAGCTAAAATTTAAGTGTTAGGCTTGAGAAAATTGTAAACTTAAAGACTTAAGTTACTTAAAATTTAACACAGTATTTATATTTATTTATAAATAATATATAAATAATTATAAAATTTAAATTTCTAATTTATCGGTTTGGTTTGGTTATTTTTGCAGTTGTTTTTTTAGTAAAACCAAAACGAAACCAAACAGTATCGGTTTTCAAAATTTAAAAACCAAACCTAACCAAATCAAACCAAATATCGGGTTTTTTAATCGGTTTGGTTCGAATTACGGTTCGAATTGGTTGGTTAACCATAACCATGAACAGCCCTACTCCCACCCCATCTCTCTCCGGAGTTCTTTCTGTTTCCTTCCAATGGGTGAATTGAGGTTGCATATCTAGAGAACTGAAGGCAATCAAATGTAATGTCTTGATGTCTGCTTGAGAAAAATTATGCTGTTTCTAGATTGAAATTTAGCTTTTGCAGCCTTCCGTTCTAATCTTTATAGCTAAGGTGAGGGAACCGGAAACTTACTATCACTTCATGATTAATGTTGTGCAGATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAGGTACCAGGGACACTGGTTCTGGTTGTTCTATCGCGACTAGTGAGCTTTGTAAGTATCATTGACCATTGTGCCTCATTTTTGAAGGTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATGGTAAGATATAGTTTTTGATGAAGATGGTAAAATATTGCAATTACTTCGAAAAGTACTATAGTTACACCTGTTTCTATGACAAGAAGTTCCTTATTAATACCAAAAAAAATATCCTTATTAATTGTAAAATTCTTAAGGTAAGTTTTTATATCGGGAGGGAGAGAAGGCAGACGTGAGGGCATGTATAGGTGTTGGCTACTTCTTCTCGTTCGACATTGCAATAATATGGATTCTAATTCTTGATTTTGGTGACAAATGAAATGGACTTTTCTCAAGAAACTTGTGTGCCAATACTTTTAACTTCCATTTTTTACTTTTTGAATAGATAGGCGATCACGTATTGTAATTTCTTGGCTTTTCGTTATTACAATGCCAGATTTGATTATCCTCGAATCATTTCTGTTATTTGGTCATTGGATTAATACGAATTTTTTCTGTATTCAGGAAGAACCTCTAAGTTCTCAAGTTTTATGCCCTAATTGGTGCATCTGGAAAAAACAGTATTTGTTGATTGACATAGCTTTTCTATTAAATAAGAGTTGATAGTTGTTGAGCAAGCAAAAACAAGAGTTAAAAGTTGCTGATTTTCACCATTGTGAAAGTTTTGGTTGCTCCTAGTAGTATCATTAGAATTTTACTACTGAGCATTCAATATTTTGAAAGCTGGGGATTTTAAGTTTTTTCACGAAGTGTCTTAAAGCTGGGTATAGTGTATTTGGTAGGGATGTATGATTGTATTTTCCAAAATAGATTTCTCTGTGGACCACATACCAAGGTATTTGTCTTGGATTTACTTACGCCATCTGAGCCGGAGAACTAATTTTTTCCCATCTGGATGTTTTTGCCGTAGCCTGTAAAAAATTTGGATTATTTGTATCCATAAGTCTAAGTTGAAATATTTGAAGGTAGTAAGAAGTCTTAATTTATTTTTTTCTGCAGGTATTTATGTCAGTCGAAACACATA</genome_strand>
        <mrna_strand>GTTTCCCTGGATATGCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGACTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACTTGCTGTGGAACTCGAAACTGCTGCACGGTTGAGAGCTTCTCAGTTCATTTTTCCTCAAAGGCCATGGCTTG......................................................................................................................................................................ATTTGTATGGGATCAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGTAGCAAGCAGTTTGTTGATCCTGCATTGATACACAGAGTGCTACCTGATGAACTGCTTTTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTCAAAAACAACCCCATACACCTTGGGTAGGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG....................................................................................GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCAGTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGTCAGTCGAAACACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413914" ref_strand="+" ref_description="SGN-E413914 [STM-18-L7]">
      <seq>tggagtttcccttggatatccaaattgtcaagcacaacattcaaaaccaagaaaaatgacttcagattacacagtggaacttgctgtggaactcgaaactgctgcacggttgagagcttctcagttcatttttcctcaaaggccatggcttgatttgtatgggatcaatgttagacctgtcgctccttttggaagtgctagtagcaagcagtttgttgatcctgcattgatacacagagtgctacctgatgaactgctttttgagatcttgtcaaaaacaaccccatacanccttgggtagggcagcttgtgtttgtcgaaagtggaggtatacaattcggaaccctgtattttggcgcaatgcatgcctaaaggcttggcaggtttctggattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="74022" stop="70305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73722" g_stop="73670" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="65" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73669" i_stop="72712" i_length="958">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72711" g_stop="72625" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="152" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166">
            <donor d_prob="0.899" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72458" g_stop="72346" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="265" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.916" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70819" g_stop="70703" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="383" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70618" g_stop="70605" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="397" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E413914" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73722" e_stop="73670"/>
          <exon e_start="72711" e_stop="72625"/>
          <exon e_start="72458" e_stop="72346"/>
          <exon e_start="70819" e_stop="70703"/>
          <exon e_start="70618" e_stop="70605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAGGTGAGCTATGAAATTCTCCAAAATGTGAACTTTTTTCTCTCTATTGTGTTCTAGAATTGGTTTTTACCTTCTGTGTATTTGTAAATTTAAATTCTTTGGTTGGAATCTTTCTTGGGTTTTGGGATATGGAAAGGGTTGTGTATGATTGAGAAGGAGTTGTATTGTAAGAAAGTTCAAATTTTTGGTTGGATTTTACTGGGATTTCATTAATTTCAGGGAGAAGTGAAAAAAATTGAATCTTTGTTTTAATATATGTGTTTTGTAGTGGTTGTTGCTTATTTGTATGTTCTTTTCAGCTTTTGTTTTATCGTATAGTGTATTGTTTTGTGTTCAATGGAGCTGATATAAAGCATGGTAGACAGGGTTTATATTACCAATAATGCTAGGTGATTAGTAGGTACGCAATGGATTAGTCACGGTGCGAAGGACCCCGGTTACTATTTTTAAGGAAAAAGGAGAAGATAATTGGGTCTGTTCATATCCAAATCTTTCATAGATAAAAGATTAGACTCGTCACTCGTCTATATTTTAGCTGGTCTGCAGTTAGATGAATCTTTCTGTTCTGCAGTCATTGCTAGTTTGAGAAGTTGGAACTACTGATTCAAGAGTGATTTTATGCAACTTGCCCGTTCTGTTGCAATAGTTTTCATTTATTGTAGGTTTGTTAGCTTGATCTTATTATCTTTTTAACTCATTGAGTAATGGAAGTATTTATTTCCAAATTATGTATCTATCTATCTATATATATGCATCTTTTTTGTCAATCTCTGTGTTTTTTGTCTCAGTTTACTGGTTTATGAATAAATCTGATTAGTCTTGTCAACTGGACATTGATCAGCTTTCGGACTTTTCTTCCTTGAGTTAATTTCAGAACTACAAATTGCCGCTTTTTGGTGTTTTCATGTTCTTCTTGTTCTGTATTTGTCATTATTTATTGATGATGGCTCATATCTTGCAGATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTGGTATTTTTCAAGCACTTTGTCATTGCTTACTTCAATTACCTTGCTCCTAGCAATTTGCTGCATAAAAGATTCATCATTTCTTGGATTCTTTATATTGACATTTGGTTTTGATGATGGAATTTTGTGGAACAGACTATTGTCAATTCAACTGCCTTTTTTCTTTCAGATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAGGTATGCCTTTGTGGATTTCAATTAATTTCCTCTGTAATTTTCTGATCAACATGTAAATATGTGGCAAGTGTTGGAAATGCTTTGTTACGATAGGAAGCTGAAGCATATTGATAAGACTTACAACAGAGCTGATTTTGCTAAACCAATTAATTGGTATCCAAAGTATGAACAATGTTTTTCTATAAATCAAAAGAAAATATTAACCAGAAAGTAAGGTATTTGTGGCTGTTTTGGGTTACATGTATATTTATGGTGAGGCGATATCTAACTACCCCCCTAAGAACAACTTTAATTTCATGCACATGCAAGAAGTTAGTGGATTCTACGTGGACACAAGCGTTGCTATTTTAACATCTACCTTGAGCCTTTTTCCCCTTCAATTCTTCTGAGGAGCATCCTTGGTAGCAAAGTTGGATGTCATCTCTGTCTTCTTCACAGACGAGGAACGTTGGACTCTATGATCTCATTACAGTAATCAAGTTGAGCTTTGCAACCAAGCTTAAATGTGACTGTTCCCTTTGATTCTTTCTCTGGATGGTTAGCTGGTTTTCACTGAGAATTTATTGGATTAGTCTTTAATATACTCCCACCTAGGGGTGTTTGTGGTTTGGTTTGGATCGGATATTGGTTAAAACCAAAACCAAACCAATCTAGTCGGGTTTTTAAATTTCTAAAACCAAACCAAACCAAATGAAAAAAATAACTATCGGTTTGGTTATTGACGGTTTGGTTCGGTTTTTCTGCATTTTTTCGGTTTGAAAGTAATAAATTTTTTAGGACATATGTATCTTGATTTAAAAAACATCTAGTACATGAATAATCCACAAGAGAGCTATTGTTGGTTCAATTAAGCAATTAAGCAATACTAGAGTTATCATTACCCGAACAAAGTTATTAAATTAAGAGAAAGTGTGTGACTATCTTATGAAAGGTATGGTAGGGAATAAATTTTGATGGAATTGGACTTAGGATTGTAATTAAGCTAAAATTTAAGTGTTAGGCTTGAGAAAATTGTAAACTTAAAGACTTAAGTTACTTAAAATTTAACACAGTATTTATATTTATTTATAAATAATATATAAATAATTATAAAATTTAAATTTCTAATTTATCGGTTTGGTTTGGTTATTTTTGCAGTTGTTTTTTTAGTAAAACCAAAACGAAACCAAACAGTATCGGTTTTCAAAATTTAAAAACCAAACCTAACCAAATCAAACCAAATATCGGGTTTTTTAATCGGTTTGGTTCGAATTACGGTTCGAATTGGTTGGTTAACCATAACCATGAACAGCCCTACTCCCACCCCATCTCTCTCCGGAGTTCTTTCTGTTTCCTTCCAATGGGTGAATTGAGGTTGCATATCTAGAGAACTGAAGGCAATCAAATGTAATGTCTTGATGTCTGCTTGAGAAAAATTATGCTGTTTCTAGATTGAAATTTAGCTTTTGCAGCCTTCCGTTCTAATCTTTATAGCTAAGGTGAGGGAACCGGAAACTTACTATCACTTCATGATTAATGTTGTGCAGATCTTGTCAAAAACGACCCCATACA-CCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAGGTACCAGGGACACTGGTTCTGGTTGTTCTATCGCGACTAGTGAGCTTTGTAAGTATCATTGACCATTGTGCCTCATTTTTGAAGGTTTCTGGATTGGT</genome_strand>
        <mrna_strand>TGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGACTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACGGTTGAGAGCTTCTCAGTTCATTTTTCCTCAAAGGCCATGGCTTG......................................................................................................................................................................ATTTGTATGGGATCAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGTAGCAAGCAGTTTGTTGATCCTGCATTGATACACAGAGTGCTACCTGATGAACTGCTTTTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTCAAAAACAACCCCATACANCCTTGGGTAGGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG....................................................................................GTTTCTGGATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472913" ref_strand="+" ref_description="SGN-E472913 [cSTB-30-I10]">
      <seq>tggagtttccctgaatatccaaattgtcaagcacaacattcaaaaccaagaaaaatgacttcagattacacaggggaacttgctgtggaactcgaaactgctgcacggttgagagcttctcagttcatttttcctcaaaggccatggcttgatttgtatgggatcaatgttagacctgtcgctcctcgtggaagtgctagtagcaagcagtatgttgatcctgcattgatacacagagtgctacctgatgaactgctttttgagatcttgtaaaaaacaaccccatacaccttgggtagggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="74023" stop="70479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73733" g_stop="73670" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.828"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73669" i_stop="72712" i_length="958">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72711" g_stop="72625" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="151" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166">
            <donor d_prob="0.899" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72458" g_stop="72346" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="264" r_length="113" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.916" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70819" g_stop="70779" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="305" r_length="41" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E472913" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73733" e_stop="73670"/>
          <exon e_start="72711" e_stop="72625"/>
          <exon e_start="72458" e_stop="72346"/>
          <exon e_start="70819" e_stop="70779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCGGGCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAGGTGAGCTATGAAATTCTCCAAAATGTGAACTTTTTTCTCTCTATTGTGTTCTAGAATTGGTTTTTACCTTCTGTGTATTTGTAAATTTAAATTCTTTGGTTGGAATCTTTCTTGGGTTTTGGGATATGGAAAGGGTTGTGTATGATTGAGAAGGAGTTGTATTGTAAGAAAGTTCAAATTTTTGGTTGGATTTTACTGGGATTTCATTAATTTCAGGGAGAAGTGAAAAAAATTGAATCTTTGTTTTAATATATGTGTTTTGTAGTGGTTGTTGCTTATTTGTATGTTCTTTTCAGCTTTTGTTTTATCGTATAGTGTATTGTTTTGTGTTCAATGGAGCTGATATAAAGCATGGTAGACAGGGTTTATATTACCAATAATGCTAGGTGATTAGTAGGTACGCAATGGATTAGTCACGGTGCGAAGGACCCCGGTTACTATTTTTAAGGAAAAAGGAGAAGATAATTGGGTCTGTTCATATCCAAATCTTTCATAGATAAAAGATTAGACTCGTCACTCGTCTATATTTTAGCTGGTCTGCAGTTAGATGAATCTTTCTGTTCTGCAGTCATTGCTAGTTTGAGAAGTTGGAACTACTGATTCAAGAGTGATTTTATGCAACTTGCCCGTTCTGTTGCAATAGTTTTCATTTATTGTAGGTTTGTTAGCTTGATCTTATTATCTTTTTAACTCATTGAGTAATGGAAGTATTTATTTCCAAATTATGTATCTATCTATCTATATATATGCATCTTTTTTGTCAATCTCTGTGTTTTTTGTCTCAGTTTACTGGTTTATGAATAAATCTGATTAGTCTTGTCAACTGGACATTGATCAGCTTTCGGACTTTTCTTCCTTGAGTTAATTTCAGAACTACAAATTGCCGCTTTTTGGTGTTTTCATGTTCTTCTTGTTCTGTATTTGTCATTATTTATTGATGATGGCTCATATCTTGCAGATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTGGTATTTTTCAAGCACTTTGTCATTGCTTACTTCAATTACCTTGCTCCTAGCAATTTGCTGCATAAAAGATTCATCATTTCTTGGATTCTTTATATTGACATTTGGTTTTGATGATGGAATTTTGTGGAACAGACTATTGTCAATTCAACTGCCTTTTTTCTTTCAGATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAGGTATGCCTTTGTGGATTTCAATTAATTTCCTCTGTAATTTTCTGATCAACATGTAAATATGTGGCAAGTGTTGGAAATGCTTTGTTACGATAGGAAGCTGAAGCATATTGATAAGACTTACAACAGAGCTGATTTTGCTAAACCAATTAATTGGTATCCAAAGTATGAACAATGTTTTTCTATAAATCAAAAGAAAATATTAACCAGAAAGTAAGGTATTTGTGGCTGTTTTGGGTTACATGTATATTTATGGTGAGGCGATATCTAACTACCCCCCTAAGAACAACTTTAATTTCATGCACATGCAAGAAGTTAGTGGATTCTACGTGGACACAAGCGTTGCTATTTTAACATCTACCTTGAGCCTTTTTCCCCTTCAATTCTTCTGAGGAGCATCCTTGGTAGCAAAGTTGGATGTCATCTCTGTCTTCTTCACAGACGAGGAACGTTGGACTCTATGATCTCATTACAGTAATCAAGTTGAGCTTTGCAACCAAGCTTAAATGTGACTGTTCCCTTTGATTCTTTCTCTGGATGGTTAGCTGGTTTTCACTGAGAATTTATTGGATTAGTCTTTAATATACTCCCACCTAGGGGTGTTTGTGGTTTGGTTTGGATCGGATATTGGTTAAAACCAAAACCAAACCAATCTAGTCGGGTTTTTAAATTTCTAAAACCAAACCAAACCAAATGAAAAAAATAACTATCGGTTTGGTTATTGACGGTTTGGTTCGGTTTTTCTGCATTTTTTCGGTTTGAAAGTAATAAATTTTTTAGGACATATGTATCTTGATTTAAAAAACATCTAGTACATGAATAATCCACAAGAGAGCTATTGTTGGTTCAATTAAGCAATTAAGCAATACTAGAGTTATCATTACCCGAACAAAGTTATTAAATTAAGAGAAAGTGTGTGACTATCTTATGAAAGGTATGGTAGGGAATAAATTTTGATGGAATTGGACTTAGGATTGTAATTAAGCTAAAATTTAAGTGTTAGGCTTGAGAAAATTGTAAACTTAAAGACTTAAGTTACTTAAAATTTAACACAGTATTTATATTTATTTATAAATAATATATAAATAATTATAAAATTTAAATTTCTAATTTATCGGTTTGGTTTGGTTATTTTTGCAGTTGTTTTTTTAGTAAAACCAAAACGAAACCAAACAGTATCGGTTTTCAAAATTTAAAAACCAAACCTAACCAAATCAAACCAAATATCGGGTTTTTTAATCGGTTTGGTTCGAATTACGGTTCGAATTGGTTGGTTAACCATAACCATGAACAGCCCTACTCCCACCCCATCTCTCTCCGGAGTTCTTTCTGTTTCCTTCCAATGGGTGAATTGAGGTTGCATATCTAGAGAACTGAAGGCAATCAAATGTAATGTCTTGATGTCTGCTTGAGAAAAATTATGCTGTTTCTAGATTGAAATTTAGCTTTTGCAGCCTTCCGTTCTAATCTTTATAGCTAAGGTGAGGGAACCGGAAACTTACTATCACTTCATGATTAATGTTGTGCAGATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGC</genome_strand>
        <mrna_strand>TGGAGTTTCCCTGAATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGACTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACACAGGGGAACTTGCTGTGGAACTCGAAACTGCTGCACGGTTGAGAGCTTCTCAGTTCATTTTTCCTCAAAGGCCATGGCTTG......................................................................................................................................................................ATTTGTATGGGATCAATGTTAGACCTGTCGCTCCTCGTGGAAGTGCTAGTAGCAAGCAGTATGTTGATCCTGCATTGATACACAGAGTGCTACCTGATGAACTGCTTTTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTAAAAAACAACCCCATACACCTTGGGTAGGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342749" ref_strand="+" ref_description="SGN-E342749 [cTOF-7-A20]">
      <seq>aaacttggtcttgactcttctaataaatgtgaatttgttaaatatcttgaacagggtacagatgatattacaaacgataatggtataccggaactattgaactggtggagaaatcgtggagctcaatatccaaaacttagtaggatggtgaaggatgtgcttgcaattcaaggatcatcagtagcttcggaggcagctttcagcgcggcaagatttcaaattggagaccacagatattcgttagcagaagacagcctggagatatcagtgttatttagagattggataaatgctgagcgtagaaatcaaggacttccaaagttagatagtcaatttgaacttttcatagattcaactattggatgtggtagtgacgatggcatcgaaattcaagatcgtcaacgagctttaccaagaccagaagttgatcacaatcaatccctagctgagttagaaagaggatttacgggactatacaactattagtattacattcgagacatagttgaaacagaacccttcctagaaggtggctgcgtaagctatgtactctactaatagttgtaaattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="80148" stop="78974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79848" g_stop="79274" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E342749" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79848" e_stop="79274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTCAAATATCTTGAACAGGGTTCTGATGATATTACAAACGATGAAGGTATACCACAACTATTGAATTGATGGAGGAACCGTGAAACTCAATTTTCAAAACTTAGTAGGATGGTGAAGGATGTGCTTTCAATTCAAGGATCATCAGTAGCTTCGGAGGCAACTTTCAGTGCAACAAGATTTCAAATTGGAGACCACAAATATTCGTCAGCAGAAGACAACTTAGAGATATCAGTGTTATTTAGAGATTGGATAAATGCTGAGCAGAGAAATCAAGGACTTTCAAAGTTAGATAGTCAATTTGAACTTTCTATAGATTCAGCTATTGAATGTTGTAGTGATGATGGCATCGAACTTCAAGATCGTAAACGAGCGTTACAAAGACCAAAATTTGATTATAATCAATCTATAGCTGAGTTAGAAAAAGAATTTACGGGACTATACAACTATTAGTATTACATCCGAAACTTAGTTGAAACAGAACCCTTTCTAAAAGGTGGCTATGTAAACTATGTACTCTACTAATAGTTATAAATTGAAAT</genome_strand>
        <mrna_strand>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTTAAATATCTTGAACAGGGTACAGATGATATTACAAACGATAATGGTATACCGGAACTATTGAACTGGTGGAGAAATCGTGGAGCTCAATATCCAAAACTTAGTAGGATGGTGAAGGATGTGCTTGCAATTCAAGGATCATCAGTAGCTTCGGAGGCAGCTTTCAGCGCGGCAAGATTTCAAATTGGAGACCACAGATATTCGTTAGCAGAAGACAGCCTGGAGATATCAGTGTTATTTAGAGATTGGATAAATGCTGAGCGTAGAAATCAAGGACTTCCAAAGTTAGATAGTCAATTTGAACTTTTCATAGATTCAACTATTGGATGTGGTAGTGACGATGGCATCGAAATTCAAGATCGTCAACGAGCTTTACCAAGACCAGAAGTTGATCACAATCAATCCCTAGCTGAGTTAGAAAGAGGATTTACGGGACTATACAACTATTAGTATTACATTCGAGACATAGTTGAAACAGAACCCTTCCTAGAAGGTGGCTGCGTAAGCTATGTACTCTACTAATAGTTGTAAATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426698" ref_strand="-" ref_description="SGN-E426698 [STM-47-E3]">
      <seq>taatactaatagttgtatagtcccgtaaattctttctctaactcagctatagattgaccgtaatcaactactggtcttggtaaagctcgttgacgatcttgaagttccatgccatcgtcactaccacatccaatggcggaatctatgaaaagttcaaattgactatccaactttggaagtccttgatttctccgctcagcatttatccaatctctaaacaacaccgatatctccaaactgtcttctgctaacgaatatctgtggtctccaatttgaaatcttgccgcgctgaaagctgcctccgaagcaactgatgatccttgaattgcaagcacgtccttcaccatcctactaagttttggaaattgagttccacgagccctccaccagttcaataattgtggtataccttcatcgtttgtaatattatctgaaccctgttcaagatatttaacaaattcacatttattagaagagtcaagaccaagtttatgtttcactctaccatgggcacctacctgaggcatagacatttgaggattttcaacattatctaaagaacaatatttatcataaaaaaaaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="79058" stop="80234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79358" g_stop="79933" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E426698" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426698" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79358" e_stop="79933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATACTAATAGTTGTATAGTCCCGTAAATTCTTTTTCTAACTCAGCTATAGATTGATTATAATCAAATTTTGGTCTTTGTAACGCTCGTTTACGATCTTGAAGTTCGATGCCATCATCACTACAACATTCAATAGCTGAATCTATAGAAAGTTCAAATTGACTATCTAACTTTGAAAGTCCTTGATTTCTCTGCTCAGCATTTATCCAATCTCTAAATAACACTGATATCTCTAAGTTGTCTTCTGCTGACGAATATTTGTGGTCTCCAATTTGAAATCTTGTTGCACTGAAAGTTGCCTCCGAAGCTACTGATGATCCTTGAATTGAAAGCACATCCTTCACCATCCTACTAAGTTTTGAAAATTGAGTTTCACGGTTCCTCCATCAATTCAATAGTTGTGGTATACCTTCATCGTTTGTAATATCATCAGAACCCTGTTCAAGATATTTGACAAATTCACATTTATTAGAAGAGTCAAGACCAAGTTTATGTTTCATTCGTCCATGAGCACCTACTTGAGGCATAGACGTTTGAGGATTTTCAACATTATCTAAGGAAGAATATTTATCATAC</genome_strand>
        <mrna_strand>TAATACTAATAGTTGTATAGTCCCGTAAATTCTTTCTCTAACTCAGCTATAGATTGACCGTAATCAACTACTGGTCTTGGTAAAGCTCGTTGACGATCTTGAAGTTCCATGCCATCGTCACTACCACATCCAATGGCGGAATCTATGAAAAGTTCAAATTGACTATCCAACTTTGGAAGTCCTTGATTTCTCCGCTCAGCATTTATCCAATCTCTAAACAACACCGATATCTCCAAACTGTCTTCTGCTAACGAATATCTGTGGTCTCCAATTTGAAATCTTGCCGCGCTGAAAGCTGCCTCCGAAGCAACTGATGATCCTTGAATTGCAAGCACGTCCTTCACCATCCTACTAAGTTTTGGAAATTGAGTTCCACGAGCCCTCCACCAGTTCAATAATTGTGGTATACCTTCATCGTTTGTAATATTATCTGAACCCTGTTCAAGATATTTAACAAATTCACATTTATTAGAAGAGTCAAGACCAAGTTTATGTTTCACTCTACCATGGGCACCTACCTGAGGCATAGACATTTGAGGATTTTCAACATTATCTAAAGAACAATATTTATCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606039" ref_strand="+" ref_description="SGN-E606039 [21974]">
      <seq>gaacagaaagcaagaatatgcaagaaatttgctgaagcagacaagtgtcttgttgacggagcggatgagtatttgcaacttttgaatgttgcaagcagcacaatgcaagcgcttagcaacatgccacaggacatggcattttgaatttgtattcctcttatcaaaacttcttgctaagtcacattaatcgacggcttatttggtttattggaaagtctgctttctagtctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="86413" stop="16367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86113" g_stop="86069" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86068" i_stop="85645" i_length="424">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85644" g_stop="85466" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="227" r_length="182" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85465" i_stop="83951" i_length="1515">
            <donor d_prob="0.790" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83950" g_stop="83917" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="261" r_length="34" r_score="0.735"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83916" i_stop="83846" i_length="71">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83845" g_stop="83824" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="283" r_length="22" r_score="0.682"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E606039" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86113" e_stop="86069"/>
          <exon e_start="85644" e_stop="85466"/>
          <exon e_start="83950" e_stop="83917"/>
          <exon e_start="83845" e_stop="83824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAAAGCAAGAATATGCAAGAAATTTGCTGAAGCAGACAAGGTTATTCCTCTTCTTCAGCTTACTCTAATAGTATTGTTGTCAGAGTGATTATTGCTGTTTATACTCCTTTGTGTTTTATTTTTTATTTCCTCCATCTCTGAAAGAATGATGAGGTTAGAACTACGAGGGTCCCAACATTTAGTTCTCTGCATCAATTTCTTAATTTGTAGTCAAAAGTGCAACTTGTTTTAAGACGTGAGTATTAGTTTTGGTTATTTTTTTCTTTCCCAGTGAACTAGAGTACTGACTAATGAATAGCTGTGTGCTATGAATTCGGTATTAGTGATAGTGTCATCTGAAATTCTCCCCTAGTTTAGCTTATTGCAGTAACGTATCAGCACCATAGTCGATTAGCACCATAGAATTGACTGTCTCCAGCACAGTTAGCTGACAATGATGTGCTTATGTTTTCCTTTTTCTGCAGTGTCTTGTTGACGGAGCGGATGAGTATTTGCAACTTTTGAATGTTGCAAGCAGCACAATGCAAGCACTTAGCAACATGCCACAGGACATGACATTTTGAATTTGTATTCCTCTTATTAAAA---CTTGCTAAGTCACATTAATCGACAGCTTATTTGGTTTATTGGAAAGTCTTTTGATATGGTTTGCTTTCTAGTCTTTCTTAGTTCTTTACCTCATAAATTTGTCTACTTAGGTAGCGGCTTGTTTTTGCATTTCATCTTTCATCTTTCATCTTCATCTTCACTAAATATGTTATATAGCAAGAATTGTATTAGGAGGAAAGTACAAGTTTGACCCGACCCGCTATGGGGGTTGCCTCAGATTGGTGCTTTCCGTCTCTATTGCTGAAGCAAGCAATGGAGAAGAATACGAAGAAGAAGAGTCATAAGAATGGACCCGAACTGGGACCGGATTACTTGTCGGTTCTAGAGACTGTGTCGATGGTCGGTGTCTAGCCGGAAGTCAATTTCTCCTTTTCATGGTTCACTTTCCTCTTCATTTTCGTCACAGTGAGTTGTGGCCAAGACGACCAGCGAGTGATGCTGATTGGGTTGGCTTTGCTCTGTTTTTAGAACCAACACAGTTTTTGCTAGTTCTTTTGTGTCTACATTTCCTAAAATAGTTATTTGCTTGCTCTGCTTTCAACGTTCATGACGTAATTTTGATTTACTCAAAACAAACTCAATTGTTTGCATCAATGTAGTCTCTTGGTCATGCCTTCTAAAGCCTCTATGGTTTGTCCAAGTATGCTAAATATTGTTGCTGCAATATGAGATGGTGTTAATCCAGTTCTGCCTACTGCTCAACTGGGGATCCATGGTTAATTGTTCAGCATCATGTTAACTCTAAAAAGACGAAGATCCTGCACCTACAAGGACACCACTTCCAACAGAATTTTCACAAACTCTTGGTGACTTCTGCTATTGTGGTTTGTCCTTTGAGATGAAATGATTTGACAGAGAAAAAAAAAAGAATCGTACATATGCAGAAATCTTTCTTTAGACAGTTAAGATCATCTTTAATCCTAATTTTCTGTATTTGGAGAGAGTAAAATAGAGAATTCTCTCCAGCAACTCTCTATTTTACCCTCTCCAATTATAGAGAGAATTTGAAGAACTACTATTCATACTCTCTATCTCACTTTTTGAATATTATATTATTATTTCTATTTTTTTGTAATTAACATATTATTTTTTACATAAAACTATTAATTAAATATCTAATATATGCAATTCCTTTTAAATTTATTATAACATTGTAAAAATATTTTATTTTATATATACTACTTTTATCTCGAATTAATAATATTTTGAAATTTTTCTGTCACTTTGTGATACAATTTAATGGTATATTAATTTCCACTATGAAGAATGCAAAAAGTTTACATGATAAGATAATTTTAAAAAATAATACGTATATAACATAATAACTTAAGTACAAGATAACAACAGATACAATGTATAACATAATAATTTTAAAAATTGCAACAATAATTTAGTAATTCGGTAAGTCGTTTCTAGATTTAGCGATATTCGAAAAAGGAGTTAGTGTATGATTTAAAGAAGTTGTGATTTTGATTGGGGTTGTGCTTGTTGATATCTTTTTTTCAATTATTCGTAGTTGTTATTTAGAAGTATAGAATAATATATAATTTAGTATTAAATAAAAAAATTTTAAAAAAAAACACAAAATTTTATATTACATGAAATTATAGAATGATTATTCATAAAAAAGAAAGAAAATATTGATATTATGGAATAGGAAAACAAAAAGGAAATAGAAA</genome_strand>
        <mrna_strand>GAACAGAAAGCAAGAATATGCAAGAAATTTGCTGAAGCAGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTTGTTGACGGAGCGGATGAGTATTTGCAACTTTTGAATGTTGCAAGCAGCACAATGCAAGCGCTTAGCAACATGCCACAGGACATGGCATTTTGAATTTGTATTCCTCTTATCAAAACTTCTTGCTAAGTCACATTAATCGACGGCTTATTTGGTTTATTGGAAAGTCTGCTTTCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.......................................................................AAAAAAAAACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712570" ref_strand="+" ref_description="SGN-E712570 [FB05AH05]">
      <seq>gttcgtacaaaaattaagaactttgctgctgttgctgtaggttctaatcggcaaagtggttatccttgcccaccttttaagatcataatccttgatgaagcagattcaatgactcaagatgctcaaaatgccttgcgacgaactatggagacatattcaaaagttacaagattcttcttcatttgtaattacatcagcaggatcatagagccacttgcttctagatgtgcgaagttcagattcaagccacttcctgaagaaataatgggcagccgaatattgcatatttgtaaagaagaaggtcttaatctagattcagaggctctttctaccctcagttcaatttctcaaggtgatttgcgaagggctattacatacttacaaagtgctgctcggttatttggatcttccatatcagcaaaggaactgattagtgtgtctggggtcatcccaaatgaagttgttcaggctatattctcagcttgcagaagtggcaattttgacttggcaaacaaagaagtgaacaatgtcattgcagaaggatatcctgtttctcagatgctgtctcagttgtatgatatattagttgatgcagacgacatttctgatgaacaaaaagcaagaatatgcaagaaatttgctgaagcagacaagtgtcttgttgacggagcggatgagtatttgcaacttttgaatgttgcaagcagcacaatgcaagcacttagcaacatgccacaggacatgacattttgaatttgtattcctcttattaaaacttgctaagtcacattaatcgacagcttatttggtttattggaaagtcttttgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="95830" stop="85168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95530" g_stop="95475" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95474" i_stop="94768" i_length="707">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94767" g_stop="94698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="126" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94697" i_stop="94633" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94632" g_stop="94559" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="200" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94558" i_stop="89256" i_length="5303">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89255" g_stop="89135" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="321" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89134" i_stop="89013" i_length="122">
            <donor d_prob="0.548" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89012" g_stop="88950" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="384" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88949" i_stop="88396" i_length="554">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88395" g_stop="88336" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="444" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88335" i_stop="86355" i_length="1981">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86354" g_stop="86229" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="570" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="86228" i_stop="86153" i_length="76">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="86152" g_stop="86069" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="654" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="86068" i_stop="85645" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="85644" g_stop="85466" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="833" r_length="179" r_score="0.989"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="85465" i_stop="85347" i_length="119">
            <donor d_prob="0.790" d_score="0.96"/>
            <acceptor a_prob="0.825" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="85346" g_stop="85341" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="839" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E712570" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95530" e_stop="95475"/>
          <exon e_start="94767" e_stop="94698"/>
          <exon e_start="94632" e_stop="94559"/>
          <exon e_start="89255" e_stop="89135"/>
          <exon e_start="89012" e_stop="88950"/>
          <exon e_start="88395" e_stop="88336"/>
          <exon e_start="86354" e_stop="86229"/>
          <exon e_start="86152" e_stop="86069"/>
          <exon e_start="85644" e_stop="85466"/>
          <exon e_start="85346" e_stop="85341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAGGTATACTTTTGTCTTGTCTAGCTCAGTTCTTAACTAAGTTGCTCGACTCAGGTGCGGGTATTCGAGAAGGATGCGAATCCGAGTATGAATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAAAATAGTTATGAAGATATTAAAAAAAAATTCAGTTGGAAATATCGTGTATATATATATATATAGTACACTTATTTTAAGAAAAAAATAAACCCTTTTTCTGCTGGTTGATGTCCTTTTCAAGAAAAATTAAAAAGAACATGTACTTTTTCAAGAAAGATAAAAAAAGGGCTCTGTATTTCCTTTACTTGTTTCAAGAAAAAAACTCTCCGTTCTTCTCTTCTCTGTAAACTCTTCCTTCTCTTCTTTGTAGTTTTTCAACTTTCTCCTCTTTACGTCGCCGTCGCTGGAACTGTTTTTCTCTTCTTCTTTTCTCTGTACTTTTTCAAGCTTTGTCCTCTTTACGTCACCGCGTCACCGGAAATTGATTTTTTCTTCCCTAATCTTTTCTCAACTTCGGTCAAAGTGTTCGGATTGGATTGAATGAATTCGACACGCATCCCGCACCCGCACCAGAGTCGCGTCTAGACGGGTTCGCCTGCATATATGAAGAGTCCGCACAACATATGTTCTTAATGCATTTTAAGCCTCTCTTTTACTATAATGTTTAACAACATATCTTCCTTACTCATTTCAGTGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAAGTGAGTTGCCTTTCTCGTTTTTACTAATAAACTACATAAATTTGATCTAACACCTGGATTTGCAGAATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAGGTTTATTATCATTCTGCCTTTTTTTCTAATTTATCTTATTTCGATTTCCTTTGCTCTTCGTAGAGGTTTGTTTGTAAATAACAACACATTAACTGATTGTTTTCCTACGTAAATTGATTATTCTGCCCTTGGAAATCAGCTTTACTGTTTCTGTTGAACTCGTTTTTGTTGATGGAAGAAAATCAAATATAAAGAATGGTTGTATATTCTACGTTCTGCAACTGTAGAATTGGCGTCGGGATTGCCAAACTCTTAAATAATTCTGGAATCTGATTTAAGCCTTCTTGTCAGTTCCATATAACAAGTAGATCGGAGTTTTATCTTTAAATGATCCTTGAATAGTTGTGGTGAAACTCAATTAAGTTTTGCTCTTTTAAGTTTTTGCTATTTGCCCCCCTTTTCTCTTCTAGGTATAGGACAGCTGAAACAAGCTCAGTGATGGAAGTCGATTATGTGGCTAATTGGAAGTAGTGCTTCATTTCAGACTTATCTGTCCATGAAATCAACCTTGTATTTTCACTTGAAATGCATGTCGCCTATTTACAACATTTAATGAAATTATTTTGCAAACAAAACTTGGCTGATCCTTTTTTTGGTTTATTTGTTTGGGGCATCCTGGTGTGAGAATTACTGGAGACATTAAATAGTTTAACTATGATATGAATATTGGTGAATAAGTGCCAATTTACATGTGCAATTGGTTTCATCCACTCTCTTTGGTTTACTTATTTGTGCCTTTGGCTTGCTTTTTATTCAGTTTGATCTCTTTTAAGCTGTTTGAATGGTATGCGTGAAAATATTTTGGAGTAGGAACAAAATTGTTTCACTCTAAAGATATGATAATTTTACCATGATGAATCTGAGATATTAAGGGCTAGTTATGACATTGTTTTCTATTCTATGGTATTATAGAGCACCATTATGTGTAGGAGAGGTAAACTCATTAATCATAGGTAGTGCAACCAAAGACCACTTTTTGGGCTTGAGTCGGTGAGTATTTTGGAGATGATTTTGTACACTCGACCAATTAGGCTAATGGGTCTGAGGTCAGTGAGCTCCTTAGCTCCCATTTTTTTTGAAATTAAAGCCAGATAGGTAGAGTTGAAGCTTTTCTCAAAGACGCACCTCTCATGAAAGTTCTTGACTGTGGCGATCACATCTTTTCCAATAACCTCCCAACAATGGGTATAGAAGGCCATGGTAAAACCATCAGGAGCAGGAGCTTTGTCACTAGCACAAAGTTTGACACTATCCTTATCTCTTGATCCTCAAATTCCTTCTAAAGCATGAAATTATCTTCAGCATTAATTTTGTGATTCATCCTGCACCCACCTGAAGGTCTCCAAGTTTCTGATTCTGAATAAGTTCTAACAGAAAACTACAATTTCCTTCTTTATGTCTTTTGGATTCCTGAATACTTCACCCCCCACATTTAGCTCATCAATATTGTTGTATCTTCTGTGTAAGTTGGTGCGCGAGTTGGCAGTTTTGTGGGAGAACTTGGTGTTGTTGTTGCCCTGTTTTAGCCAACTAACCCTTGATCTCTGTCTCCATGCAATCTCCAAACTCTTAACAGAAGCTTAGCTTTTGAGTGGATCTCCTCTTCCCCAAGAGCTCTTTGATCCTGGACTTCCTCAAATTCAGCAAATTGATTGACTATGTTCTCTTTCTGTAATGCCAAATTTCCTTGTGCTGATTTGCTACACTCTCTCAACTCAATTTTAAGTGTTTTCAGCTGAAAGGCTAAGATGAAATCTGGCCTTCCTTCACAGTCAAAGGACCTCCACCATTCCTTGATTCTATCTAAAAAACCCTCAGTCTGCAGCCACCAATTTTCGAATTTAAAATAGGACCTCACAGGCTACCGAAACCATCAGTCTGCAGCCACTAATTTTCGAATTTAAAATAGGACCTCACAGGCTACCAATTCCCACATTGTATTAGAATTGGTGAGTGATCAGAAGTGACCTTTTGCAGGATTGATTGCTTGTTATTTTTGAAGCCTCCATTCCACTCATCAGACACTAGAAACCTATCTAGCCTAGCTGCAATTTCATGTTCCCCCATGTGTAACTTCTTACTGCTAATTGAAGGTCCAACAAGCTCATATCTTCAATGAAATCAGGGAGGTCAGACATCAATTTTGTGATTCTTGAACAATTTTTCTTCTCAGAGAGGAATCTAACTGTGTTGAGATCCCCACAAACTACCCAAGGGCCGTTGAACAGGCCTCTAGCTGACCCAACTTCCCACAAATCTTCTTCTCTTTCTTCTCTACTATTTGGAGCATAGATGCCAATAAGTACTGGTGAAGTCAAGACTTTTACCTATGAACTTGCAGGATATAGAGCATGCTTCCACACTGCTAACCTGCCCTGTCCAAACCTTCCCGTCCCAAATAATTAGGATGTCCCCGCTAGTACCACGAGCTTCAAGTTGACAAAATTCCACTCCTCAGTTTGCCCATAAATCTTTAATAATGTTTCTCACATCCCCTATAATCTTGGTCTCTTGGAAGCAATAAACATCAGCCTTCCACCCTTGGATAGATTCTTGATTACACACCTCTTATTTGCCTGATTCAGGCTTCTCCATTCCATGAAATTATCTTGACTGTCATTTATCACTAGCTAATGTTTAACCCTCCCTGCTTCTGGTACCATTATTTCTGAAGTTGCTCCCACATCCTAGGCTCTTAAGTTCTTTTGAGCCTTTAACTACTGAAGTTGAATTCAAGTTCTTCCCACCCAGTCAGTGTTATTCTGTCTCATACTATTGATCTTCATAAACAACCTCGTAGCTTCCTCTTTGCATCCCTTAGTGTTTACTCCGAAATCCTTTGCTAATTTTATGTTCTGATAGATCCAAATCGGAACGTCAAGCTCTGAATCATCTTCTTCCTCTGGACTACGTGGTTTAAAGGAACTACATCTTCAATTATTGTCAAAGAGTAGTTCTCTTCACCTCTCTGTGAATCAAGTTTTTGAAAGCAATAGTTTTCCAAATGCAGAATGAGAATCAGGAAGGTCTGGGCACTTGTTTGACACTTCCACTGTTTCTCTATCAACATTATCTTCTGTATCAGCTTCCTTCTCCATCGCATTTTCTTCCAGTTCTGTTCCTTCTATTTTTTTTGCACCTTGAAGCTGATGGAGGAATAGAAGTGGCTTCAAGTTCCGCAGTGATTGGCTCATTTAGCTGAGAGAAGGAGTTTTCAATGAGAGGCCCACTTAAAATGAATTGTGCCAGCAGATCCGGGCCCATTTTTTCGCCCTATCTTACATATTTGGATTTCTTAGGAATCGAATTGTTGAACGGTACAAAGGTTCACGTGCTGGTACAGCAGGTTGTTTCAAAATTGCTGGATCCTACGAGGAATCCACGTGTGCAGAAACCTCTGTAAAGCTTAAAAGGCTCTCATCCCCTCTATGTCCAATCAATCTTTGGACCTGGTTGTTAGGGACAACTGGAATTCTCTCATCGGTAACCACCCTCGCAGATGTTTCCACCCAAATCTTAACTTTGAAAGTCAAACCCTCATGAACCAGCTGTGCTGAATAAGGGACAAAATAGCCATCACCTCTCACCTTTAACCTCGCCCATTCAAGTGATTACAAAGCTCCGTCTCTTCTTCAGTTTGAATCCAACCTCCACAGAAATTCCCGATCTCCCGGAAGACTTTCTTGGACCAAAGTTGGAGGGGTAAACCCACTATCCTGATCCAAATCTGATCCGGCTTTTCATGGATGGAGTTCGAAGTCGGCGACCACCTTGAAGATTGAACTTGTGTGTTTTCCAGAACCATTTTCCTCTTACTATGTGTTCTGCAACAGTTTTATTGGGGAGTTCAAATAAAAATCAATTATTCCCCAAGTCATAGATATTGATGCCATGATGATGTCTCCAGGTACTCCCAACCCATCTATGAATCTCCGACAAAATGATATCTGGGATCTCCTCCGGCAGAGTTACACTCTTAGCTAGTATGTCATACTGGGTTTTTGGTATGGCATCTGTAATAACCAGCAAATTTCCTTTTTGTTGTATCTTGGCATCAGTAAAGTCTCTTGTAGTCCATTTATTACTTCTGACAGTATCGAATATGATAGGCCCTCTGTTTCCCTGTGTGTTGTATTAACTGTTCTCTGAACCTTAACATTGATAAAAATTGATAATTTGCAATTCCATCCATCCGGAATTTTGAGACCACTCCGGGATGATGATCACTGCTCTTCTCCTACCCTGCATGTTAATGATGCTGATGTATCGACCATATTTGTTGAAATTTCTTGAGCAAAAGAATTCTGAAAAAAGATCCTTTAACTTCCAGCTGCGAACTGAGTTCCCTTGTCCTTGTGAAGCTTCTTTAAGAGCGTAAATCAACCATTCCATGTCTTCTGGTTAAAGCTCATCCTTGTTATCTCGTTACGGCCTCTTTCTATCCAGTCATACCATGTATCTGTTGTAGGCCTACCGCGAAAAAAATGGTGTCCACTCCCATGAGAGAGTGCCGGTGACCTGTGAAGCGATTGGCGTCCCACGCGATAGGCGTGTGAGGCGCGTGGCGTCGGTGTCTGATGGAGAAAGGAGGCGCGTGGGAGCGCATGAGGTGTTTTTTGAGGATGGGTATTTTTGGGGTAGGGTCGGAATAGGGTGAAGGAGGTTGTGATGGAGGCAATTGGAAGAAGGAGAAAGAGAGATGGAATTCCGGTGGTCAGAAGGACCACCGGATAGGTTTTCTGGGTAGTGAGAGGATTTTAAAAGTTACATCGGGATTAGTGCCTGGGAGAATTAAAAAAGTAGAACATCCTGCTATATTGTGCACATTTTGTGGTTAACTTAAAAGATCTTTCAAGCTTTCTGCTGAATGTGCTTAAGGTGGAGTAGGGAAGATAATGATAAATATATTGTGAGAAATTGTATTGAAGGCTCAATGCTCTTCACTGGCTTATACCTTCTGGCCTTGTCACATCTTCCCTTCCTCAGAATGTTTTTTATTTCCTTTTCCATCTTTATGCTCAAGTCATTGTGTACTAACACTATGGTATTTGATCTTTTTTTCAAAAGAACCTATGGACACACAAATAAGTTTGACTTGATCATTTATTCATCTACATGATATAAGGTGGTTACATGACTATATGATATTTTCCCCGAGACAAAAGAAAAAGACTTCCTCTGGCATGCTGTTTGTTTTTTGTTTTCTTGTAAGTAAGCCATTTTCTTTGATTACGTGATAGGTTATTGATCTAAGTACGTTTTTTTCAGAACATTAATAAATTGAATAATCTTCTTTGGTTTAGGATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAAGAAGGTCTTAATCTAGATTCAGAGGTGTGGGGATATAGTAACTTGATTCCTTTTTTGTAACTACTGTTTGCTTCATTCATTTAATTGATGGTTCAATTGTCACTTTGGAATTAAGCTATATATAGGAGTGTGTCATCTGATTGCAGGCTCTTTCTACCCTCAGTTCAATTTCTCAAGGTGATTTGCGAAGGGCTATTACATACTTACAAGTAAGATGAATTTTCTGCCTTCTACATTTTTTAGTATTAAGAAAAGAAGCTAAAAGAATTGCTAGTTGGCTCAGCACAAGGAAAGAGAAGAACACCTATAAAAAAGAACCATTCTTCGTGAATTAGAGGAAATATTTCTCTGCTTTGATTTATCTAAATATAATCTGCTTAGTTCTAGACTATATCTTTGGATTGTGCAGTGAAAAAAACAAGGATAAGAACTATATATGCAGTTCTAGCTAATCTTCCCTGAGATGAGAAAATACGTAGGACTGAAGAAGTAAAGGAGTAATCACATTTATTGATGATTGGAAAAAAAGGTGAGAGTGGAACATCATACCCATAATAAATATCGCAGAGACACTTGTTCAGCTATGAGATGCTGCTGCTGCTGCAATTTCAGTTCATTCTAGAATTAGAATGAAGCTTTCCTTATTGTTTTATGGAAGGAATAAATATTATGCAATTTCTACCCTCTGCTTCTTGCCATCTTTTACTTCCTGACTATATTATCAAACATTGAAAATTGATTGGTAACATTTTAATTGCTGCAGAGTGCTGCTCGGTTATTTGGATCTTCCATATCAGCAAAGGAACTGATTAGTGTGTCTGGGGTAAGTTCATATCTGGTTCTGTTGTGTTAATTTGATATTTCTTTTAGACCAACTAAGGGATCATTATTAAGCTTTCACATGATCAATGCGTTCATCTATTAAAATTTTTGGGACGGAAAATTGTTGATTTATGCATCAAGCCTTTTCTTTACCTTGATGTATATAATACTTTGACCCTGTTTGGATGGGCTTTGCTTATGACTTTATAGCCAAAAGCCAAAGAAAATTCTAGCTTATGGCTTTGACTGGTTTTGGCTTAAAAATAAGTGCTTATAAAAACTTCTTTTATTTTACCCAAAGCACTTCTTTTATTTTACCCAAACACTACAAAATTGCTTAAAAGCTATTTTTGCTTAAAAGCACCTACAATAAGCCAATCCAAACAGGCTATTATTGTAGCAGTATATAGATGTATAAGACATTCTCCTTATTAGTACTGTGCGTTTTTATGTGGTTCTAATTTATTCCTTTATTTCAATGAAGGCTATTATAAATTTCACCATTTTCTTTGGCATCTGAGCCTTTGATATTTGGGCTATGCTGATGTCACAAATCTGAAAGAGTTTATTTACAACTTTTAGTAGTAGTAGTTAAAACTAAGGAAAAGAAGAGAATTTTTTTTTGGAATGTCTTTAAATATCTTAAAATGAGAAAGCAAGCATAAAGTCCTTTTGATTGGTGTCAATAATTACATTCTTAACTGAAAATATAAAGATTCTAATATAGAACCTGGACAATTTCATAACAATGCCCTTTAAATTGGAGCACGCATACTGTATGCTCGTTACTTGTCTCAAATATAATCACTCGTGGAGTTCCACGGTGATTTTGCAAACATCTGTTATTATTTGAGTTGACAACTTGTAGCAATACATTCATATTCAATCTTTTTTCTTAAAATTGATGAAGTAAGTTTACTGAAAAGCATCAAGAAAGATGCATAAAACTTTACTATGAAAGGTTAAAGCTCCTTACACTGCAAAAAACTATTAGAAGCTGGGAGCTTGAAACCATGAGGAAAAATTTAAGGCTGCTAAGCCACTGAGATAATAAGTTCTAAAAGGTCATAGCATCATTAACAGCGGATAATTTGCTCCAACTAAAAAGGTTAACAAAACACTTGGTTTTTAGATCACAGTTAGGAGTTGAAGTCCCATCAAAGTATCTGCTGTTCCTCTTTGTCCATGAACACCAAAAAATACATACTGGTTTCATTTGCCAGATATTCTTGATGACTCTATCTACTTTCCATAAGCTCCAACTTTCAACTGCTCCTTTTAAGCTGTTTGGGGTTGTCCAACTGATTTCAGATATTACTGTTAACATGTGCCAAAGGTCTGCTGTAACAGGGCAGTGTAAAAAAAAAGGTTAACTGACTCCTGAGTCTTTTGGCACATATAACATCTGTTCATCAGCGAGATCCTTTTCTTTTAAAGATTATCCTGTGTTAGTATGGCATCTTTGAGGGCTGTCCAAGTAAAACACTTGACTTCGGTGCGTAGTTGTCTTTCATATCAGTTTCCAAGGCCAAGAACCAGTCAAAACATTGACAGCGTTCGTACTACTATAACCTGCTTCACTGAAAACACTTCTTTGCTTGAATTTCTCCATTTCCGGCTGTTTGATGTTTGAGAATTCACTGGAAGACCTTCCAAAGATGATTAGGTCGGTATTAGGATTTTGCTATGGTTTTGGTATGTGTAGATATAGAATTCAACTTAATATATTTATCATTACATATAATTCAATTTATTTTTGCTATGGTTTTGGTATGTGTAGATAAGCTCACATCTGAAGTCATGGTCAATACTGTACTTTTGGTTTATAACTGAGAAATTGTCTGAGTTAGCTGGTCCAATTCCAAGTTTGTAGACTTATTCAACACTTAGGGGAGTATAAGCCCACCCATCTGCCTTATTCGCACTTATATACTAGGGTTCTACGCTTGTTTTAGCGACTGACGTGCAATTACTATGATCAGGTCATCCCAAATGAAGTTGTTCAGGCTATATTCTCAGCTTGCAGAAGTGGCAATTTTGACTTGGCAAACAAAGAAGTGAACAATGTCATTGCAGAAGGATATCCTGTTTCTCAGATGCTGTCTCAGGTCCCAATATCTGTGTATCATCTCATTTTTCATTCAACCATGCTAACATGTTGTACTAACATGCTGCTTCTTTCAGTTGTATGATATATTAGTTGATGCAGACGACATTTCTGATGAACAAAAAGCAAGAATATGCAAGAAATTTGCTGAAGCAGACAAGGTTATTCCTCTTCTTCAGCTTACTCTAATAGTATTGTTGTCAGAGTGATTATTGCTGTTTATACTCCTTTGTGTTTTATTTTTTATTTCCTCCATCTCTGAAAGAATGATGAGGTTAGAACTACGAGGGTCCCAACATTTAGTTCTCTGCATCAATTTCTTAATTTGTAGTCAAAAGTGCAACTTGTTTTAAGACGTGAGTATTAGTTTTGGTTATTTTTTTCTTTCCCAGTGAACTAGAGTACTGACTAATGAATAGCTGTGTGCTATGAATTCGGTATTAGTGATAGTGTCATCTGAAATTCTCCCCTAGTTTAGCTTATTGCAGTAACGTATCAGCACCATAGTCGATTAGCACCATAGAATTGACTGTCTCCAGCACAGTTAGCTGACAATGATGTGCTTATGTTTTCCTTTTTCTGCAGTGTCTTGTTGACGGAGCGGATGAGTATTTGCAACTTTTGAATGTTGCAAGCAGCACAATGCAAGCACTTAGCAACATGCCACAGGACATGACATTTTGAATTTGTATTCCTCTTATTAAAACTTGCTAAGTCACATTAATCGACAGCTTATTTGGTTTATTGGAAAGTCTTTTGATATGGTTTGCTTTCTAGTCTTTCTTAGTTCTTTACCTCATAAATTTGTCTACTTAGGTAGCGGCTTGTTTTTGCATTTCATCTTTCATCTTTCATCTTCATCTTCACTAAATATGTTATATAGCAAGAA</genome_strand>
        <mrna_strand>GTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAA.................................................................AATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAAGAAGGTCTTAATCTAGATTCAGAG..........................................................................................................................GCTCTTTCTACCCTCAGTTCAATTTCTCAAGGTGATTTGCGAAGGGCTATTACATACTTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGCTCGGTTATTTGGATCTTCCATATCAGCAAAGGAACTGATTAGTGTGTCTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCCCAAATGAAGTTGTTCAGGCTATATTCTCAGCTTGCAGAAGTGGCAATTTTGACTTGGCAAACAAAGAAGTGAACAATGTCATTGCAGAAGGATATCCTGTTTCTCAGATGCTGTCTCAG............................................................................TTGTATGATATATTAGTTGATGCAGACGACATTTCTGATGAACAAAAAGCAAGAATATGCAAGAAATTTGCTGAAGCAGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTTGTTGACGGAGCGGATGAGTATTTGCAACTTTTGAATGTTGCAAGCAGCACAATGCAAGCACTTAGCAACATGCCACAGGACATGACATTTTGAATTTGTATTCCTCTTATTAAAACTTGCTAAGTCACATTAATCGACAGCTTATTTGGTTTATTGGAAAGTCTTTTGATAAA.......................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716757" ref_strand="+" ref_description="SGN-E716757 [FB17DG08]">
      <seq>cctcagttcaatttctcaaggtgatttgcgaagggctattacatacttacaaagtgctgctcggttatttggatcttccatatcagcaaaggaactgattagtgtgtctggggtcatcccaaatgaagttgttcaggctatattctcagcttgcagaagtggcaattttgacttggcaaacaaagaagtgaacaatgtcattgcagaaggatatcctgtttctcagatgctgtctcagttgtatgatatattagttgatgcagacgacatttctgatgaacaaaaagcaagaatatgcaagaaatttgctgaagcagacaagtgtcttgttgacggagcggatgagtatttgcaacttttgaatgttgcaagcagcacaatgcaagcacttagcaacatgccacaggacatgacattttgaatttgtattcctcttattaaaacttgctaagtcacattaatcgacagcttatttggtttattggaaagtcttttgataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="89301" stop="85168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89001" g_stop="88950" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88949" i_stop="88396" i_length="554">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88395" g_stop="88336" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="112" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88335" i_stop="86355" i_length="1981">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86354" g_stop="86229" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="238" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86228" i_stop="86153" i_length="76">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86152" g_stop="86069" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="322" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86068" i_stop="85645" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85644" g_stop="85466" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="501" r_length="179" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="511"/>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E716757" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89001" e_stop="88950"/>
          <exon e_start="88395" e_stop="88336"/>
          <exon e_start="86354" e_stop="86229"/>
          <exon e_start="86152" e_stop="86069"/>
          <exon e_start="85644" e_stop="85466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAGTTCAATTTCTCAAGGTGATTTGCGAAGGGCTATTACATACTTACAAGTAAGATGAATTTTCTGCCTTCTACATTTTTTAGTATTAAGAAAAGAAGCTAAAAGAATTGCTAGTTGGCTCAGCACAAGGAAAGAGAAGAACACCTATAAAAAAGAACCATTCTTCGTGAATTAGAGGAAATATTTCTCTGCTTTGATTTATCTAAATATAATCTGCTTAGTTCTAGACTATATCTTTGGATTGTGCAGTGAAAAAAACAAGGATAAGAACTATATATGCAGTTCTAGCTAATCTTCCCTGAGATGAGAAAATACGTAGGACTGAAGAAGTAAAGGAGTAATCACATTTATTGATGATTGGAAAAAAAGGTGAGAGTGGAACATCATACCCATAATAAATATCGCAGAGACACTTGTTCAGCTATGAGATGCTGCTGCTGCTGCAATTTCAGTTCATTCTAGAATTAGAATGAAGCTTTCCTTATTGTTTTATGGAAGGAATAAATATTATGCAATTTCTACCCTCTGCTTCTTGCCATCTTTTACTTCCTGACTATATTATCAAACATTGAAAATTGATTGGTAACATTTTAATTGCTGCAGAGTGCTGCTCGGTTATTTGGATCTTCCATATCAGCAAAGGAACTGATTAGTGTGTCTGGGGTAAGTTCATATCTGGTTCTGTTGTGTTAATTTGATATTTCTTTTAGACCAACTAAGGGATCATTATTAAGCTTTCACATGATCAATGCGTTCATCTATTAAAATTTTTGGGACGGAAAATTGTTGATTTATGCATCAAGCCTTTTCTTTACCTTGATGTATATAATACTTTGACCCTGTTTGGATGGGCTTTGCTTATGACTTTATAGCCAAAAGCCAAAGAAAATTCTAGCTTATGGCTTTGACTGGTTTTGGCTTAAAAATAAGTGCTTATAAAAACTTCTTTTATTTTACCCAAAGCACTTCTTTTATTTTACCCAAACACTACAAAATTGCTTAAAAGCTATTTTTGCTTAAAAGCACCTACAATAAGCCAATCCAAACAGGCTATTATTGTAGCAGTATATAGATGTATAAGACATTCTCCTTATTAGTACTGTGCGTTTTTATGTGGTTCTAATTTATTCCTTTATTTCAATGAAGGCTATTATAAATTTCACCATTTTCTTTGGCATCTGAGCCTTTGATATTTGGGCTATGCTGATGTCACAAATCTGAAAGAGTTTATTTACAACTTTTAGTAGTAGTAGTTAAAACTAAGGAAAAGAAGAGAATTTTTTTTTGGAATGTCTTTAAATATCTTAAAATGAGAAAGCAAGCATAAAGTCCTTTTGATTGGTGTCAATAATTACATTCTTAACTGAAAATATAAAGATTCTAATATAGAACCTGGACAATTTCATAACAATGCCCTTTAAATTGGAGCACGCATACTGTATGCTCGTTACTTGTCTCAAATATAATCACTCGTGGAGTTCCACGGTGATTTTGCAAACATCTGTTATTATTTGAGTTGACAACTTGTAGCAATACATTCATATTCAATCTTTTTTCTTAAAATTGATGAAGTAAGTTTACTGAAAAGCATCAAGAAAGATGCATAAAACTTTACTATGAAAGGTTAAAGCTCCTTACACTGCAAAAAACTATTAGAAGCTGGGAGCTTGAAACCATGAGGAAAAATTTAAGGCTGCTAAGCCACTGAGATAATAAGTTCTAAAAGGTCATAGCATCATTAACAGCGGATAATTTGCTCCAACTAAAAAGGTTAACAAAACACTTGGTTTTTAGATCACAGTTAGGAGTTGAAGTCCCATCAAAGTATCTGCTGTTCCTCTTTGTCCATGAACACCAAAAAATACATACTGGTTTCATTTGCCAGATATTCTTGATGACTCTATCTACTTTCCATAAGCTCCAACTTTCAACTGCTCCTTTTAAGCTGTTTGGGGTTGTCCAACTGATTTCAGATATTACTGTTAACATGTGCCAAAGGTCTGCTGTAACAGGGCAGTGTAAAAAAAAAGGTTAACTGACTCCTGAGTCTTTTGGCACATATAACATCTGTTCATCAGCGAGATCCTTTTCTTTTAAAGATTATCCTGTGTTAGTATGGCATCTTTGAGGGCTGTCCAAGTAAAACACTTGACTTCGGTGCGTAGTTGTCTTTCATATCAGTTTCCAAGGCCAAGAACCAGTCAAAACATTGACAGCGTTCGTACTACTATAACCTGCTTCACTGAAAACACTTCTTTGCTTGAATTTCTCCATTTCCGGCTGTTTGATGTTTGAGAATTCACTGGAAGACCTTCCAAAGATGATTAGGTCGGTATTAGGATTTTGCTATGGTTTTGGTATGTGTAGATATAGAATTCAACTTAATATATTTATCATTACATATAATTCAATTTATTTTTGCTATGGTTTTGGTATGTGTAGATAAGCTCACATCTGAAGTCATGGTCAATACTGTACTTTTGGTTTATAACTGAGAAATTGTCTGAGTTAGCTGGTCCAATTCCAAGTTTGTAGACTTATTCAACACTTAGGGGAGTATAAGCCCACCCATCTGCCTTATTCGCACTTATATACTAGGGTTCTACGCTTGTTTTAGCGACTGACGTGCAATTACTATGATCAGGTCATCCCAAATGAAGTTGTTCAGGCTATATTCTCAGCTTGCAGAAGTGGCAATTTTGACTTGGCAAACAAAGAAGTGAACAATGTCATTGCAGAAGGATATCCTGTTTCTCAGATGCTGTCTCAGGTCCCAATATCTGTGTATCATCTCATTTTTCATTCAACCATGCTAACATGTTGTACTAACATGCTGCTTCTTTCAGTTGTATGATATATTAGTTGATGCAGACGACATTTCTGATGAACAAAAAGCAAGAATATGCAAGAAATTTGCTGAAGCAGACAAGGTTATTCCTCTTCTTCAGCTTACTCTAATAGTATTGTTGTCAGAGTGATTATTGCTGTTTATACTCCTTTGTGTTTTATTTTTTATTTCCTCCATCTCTGAAAGAATGATGAGGTTAGAACTACGAGGGTCCCAACATTTAGTTCTCTGCATCAATTTCTTAATTTGTAGTCAAAAGTGCAACTTGTTTTAAGACGTGAGTATTAGTTTTGGTTATTTTTTTCTTTCCCAGTGAACTAGAGTACTGACTAATGAATAGCTGTGTGCTATGAATTCGGTATTAGTGATAGTGTCATCTGAAATTCTCCCCTAGTTTAGCTTATTGCAGTAACGTATCAGCACCATAGTCGATTAGCACCATAGAATTGACTGTCTCCAGCACAGTTAGCTGACAATGATGTGCTTATGTTTTCCTTTTTCTGCAGTGTCTTGTTGACGGAGCGGATGAGTATTTGCAACTTTTGAATGTTGCAAGCAGCACAATGCAAGCACTTAGCAACATGCCACAGGACATGACATTTTGAATTTGTATTCCTCTTATTAAAACTTGCTAAGTCACATTAATCGACAGCTTATTTGGTTTATTGGAAAGTCTTTTGATATG</genome_strand>
        <mrna_strand>CCTCAGTTCAATTTCTCAAGGTGATTTGCGAAGGGCTATTACATACTTACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGCTCGGTTATTTGGATCTTCCATATCAGCAAAGGAACTGATTAGTGTGTCTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCCCAAATGAAGTTGTTCAGGCTATATTCTCAGCTTGCAGAAGTGGCAATTTTGACTTGGCAAACAAAGAAGTGAACAATGTCATTGCAGAAGGATATCCTGTTTCTCAGATGCTGTCTCAG............................................................................TTGTATGATATATTAGTTGATGCAGACGACATTTCTGATGAACAAAAAGCAAGAATATGCAAGAAATTTGCTGAAGCAGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTTGTTGACGGAGCGGATGAGTATTTGCAACTTTTGAATGTTGCAAGCAGCACAATGCAAGCACTTAGCAACATGCCACAGGACATGACATTTTGAATTTGTATTCCTCTTATTAAAACTTGCTAAGTCACATTAATCGACAGCTTATTTGGTTTATTGGAAAGTCTTTTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620415" ref_strand="+" ref_description="SGN-E620415 [71116]">
      <seq>tgacttggcaaacaaagaagtgaacaatgtcattgcagaaggatatcctgtttctcagatgctgtctcagttgtatgatatagtagttgatgcagacgacatttctgatgaacagaaagcaagaatatgcaagaaatttgctgaagcagacaagtgtcttgttgacggagcggatgagtatttgcaacttttgaatgttgcaagcagcacaatgcaagcgcttagcaacatgccacaggacatggcattttgaatttgtattcctcttatcaaaacttcttgctaagtcacattaatcgacggcttatttggtttattggaaagtctgctttctagtctttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="86598" stop="85175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86298" g_stop="86229" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86228" i_stop="86153" i_length="76">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86152" g_stop="86069" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="154" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86068" i_stop="85645" i_length="424">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85644" g_stop="85466" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="335" r_length="181" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="353"/>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E620415" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86298" e_stop="86229"/>
          <exon e_start="86152" e_stop="86069"/>
          <exon e_start="85644" e_stop="85466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTGGCAAACAAAGAAGTGAACAATGTCATTGCAGAAGGATATCCTGTTTCTCAGATGCTGTCTCAGGTCCCAATATCTGTGTATCATCTCATTTTTCATTCAACCATGCTAACATGTTGTACTAACATGCTGCTTCTTTCAGTTGTATGATATATTAGTTGATGCAGACGACATTTCTGATGAACAAAAAGCAAGAATATGCAAGAAATTTGCTGAAGCAGACAAGGTTATTCCTCTTCTTCAGCTTACTCTAATAGTATTGTTGTCAGAGTGATTATTGCTGTTTATACTCCTTTGTGTTTTATTTTTTATTTCCTCCATCTCTGAAAGAATGATGAGGTTAGAACTACGAGGGTCCCAACATTTAGTTCTCTGCATCAATTTCTTAATTTGTAGTCAAAAGTGCAACTTGTTTTAAGACGTGAGTATTAGTTTTGGTTATTTTTTTCTTTCCCAGTGAACTAGAGTACTGACTAATGAATAGCTGTGTGCTATGAATTCGGTATTAGTGATAGTGTCATCTGAAATTCTCCCCTAGTTTAGCTTATTGCAGTAACGTATCAGCACCATAGTCGATTAGCACCATAGAATTGACTGTCTCCAGCACAGTTAGCTGACAATGATGTGCTTATGTTTTCCTTTTTCTGCAGTGTCTTGTTGACGGAGCGGATGAGTATTTGCAACTTTTGAATGTTGCAAGCAGCACAATGCAAGCACTTAGCAACATGCCACAGGACATGACATTTTGAATTTGTATTCCTCTTATTAAAA---CTTGCTAAGTCACATTAATCGACAGCTTATTTGGTTTATTGGAAAGTCTTTTGATATG</genome_strand>
        <mrna_strand>TGACTTGGCAAACAAAGAAGTGAACAATGTCATTGCAGAAGGATATCCTGTTTCTCAGATGCTGTCTCAG............................................................................TTGTATGATATAGTAGTTGATGCAGACGACATTTCTGATGAACAGAAAGCAAGAATATGCAAGAAATTTGCTGAAGCAGACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTTGTTGACGGAGCGGATGAGTATTTGCAACTTTTGAATGTTGCAAGCAGCACAATGCAAGCGCTTAGCAACATGCCACAGGACATGGCATTTTGAATTTGTATTCCTCTTATCAAAACTTCTTGCTAAGTCACATTAATCGACGGCTTATTTGGTTTATTGGAAAGTCTGCT-TTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590183" ref_strand="+" ref_description="SGN-E590183 [43773]">
      <seq>aacaaagagaacagctatggcgccagttatgcaaagctctcagccatgggtcgagaaatatcgaccgaagaaagtgaaggatgtagctcaccaggatgaggtcgtctcgagttctcaccaacactctcgagacctctaactgcccgcatatgttgttttatggtcctcctgggaactggaaagacgaccattgctcttggccattgcccatcagcttttcggacctgagctgtataagtcgagggtattggagctaaatgctagtgatgaccgtggtatcaatgtagttcgcacaagaaattaagaactttgctgctgttgctgtaggttctaatcggcaaagtggttatccttgcccaccttttaagatcataatccttgatgaagcagattcaatgactcaagatgctcaaaatgccttgcgacgaactatggagacatattcaaaagttacaagattcttcttcatttgtaattacatcagcaggatcatagagccacttgcttccagatgtgcgaagtttagattcaagccacttcctgaagaagtaatgggcagccgaatattgcatatcttgtacaagaggaaggtcttaatcctagattcagaggctctttctaccctcagttccatttctcaaggttgattcgcgaagggctattacataccttacaaagttgctgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="97296" stop="88648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96996" g_stop="96937" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96936" i_stop="96862" i_length="75">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96861" g_stop="96783" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="140" r_length="80" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96782" i_stop="96621" i_length="162">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.923" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96620" g_stop="96541" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="222" r_length="82" r_score="0.925"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96540" i_stop="95595" i_length="946">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95594" g_stop="95475" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="343" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95474" i_stop="94768" i_length="707">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94767" g_stop="94698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="413" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94697" i_stop="94633" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94632" g_stop="94559" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="487" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94558" i_stop="89256" i_length="5303">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89255" g_stop="89135" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="611" r_length="124" r_score="0.917"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89134" i_stop="89013" i_length="122">
            <donor d_prob="0.548" d_score="0.85"/>
            <acceptor a_prob="0.959" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89012" g_stop="88950" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="676" r_length="65" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E590183" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96996" e_stop="96937"/>
          <exon e_start="96861" e_stop="96783"/>
          <exon e_start="96620" e_stop="96541"/>
          <exon e_start="95594" e_stop="95475"/>
          <exon e_start="94767" e_stop="94698"/>
          <exon e_start="94632" e_stop="94559"/>
          <exon e_start="89255" e_stop="89135"/>
          <exon e_start="89012" e_stop="88950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATAGTAACCTTCCAATTAACTTAGCTCCTCTTTTCTAGCTCTCAGCCATGGAAATGTAACTTTTGGAAATTTTTGCAGTCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGT-TCGAGTCCTCACCAACACTCTCGAGACTTCTAACGTAAACCATCACTTTCATTTGATTGATTTACTGCTAAGCACATTAAACACTTACTGCCTAGGGTTTTCTTTAATTTCCTGTTGAGAATACAGAATTCAGCATTCTTTACGTGAAGAAACAAACATCAGTACTAAGTTATTATCATTTTTTTATTTGTTATAGTGCCCGCATATGTTGTTTTATGGTCCTCCT-GGAACTGGAAAGACAACCACTGCTCTT-GCCATTGCCCATCAGCTTTTCGGGTATGTTTTTAAGTTGTGTGTGGATTTTACTTGGGGTTCTCCCTAGTTGATGTTAACTTTTTTTGAACTGGTAACATTCCTAGTGGATGTCAATTTCATTTAGAAATTGGTAGTTTTGGGGGAGTTGATTATGTATAAGTTTCTATTGATGTGATTCCTGAAAATCAATATCTATTTTAGTAAAAATAGAAGTGTTTTTATATGTTAATTTCATGGGAATTTGTAGTTCGGTGGAATTGATTATGAATAAGTCTGTATAAATATGATTCCTGAAAATCCCTTTCTGCCTTTCAGTTGCCTAATGACCTATAATGCTAGTCGCTATCCAATTGGGGCTAGGAGTTTCTATCTTACACTGTTTCTAGTTTAGCAAAGAAAAGTAATTTCGTTCTTCTGCGAAAAGTTGATTCGAAATTCAAGTGTGAAGAGGAATAAGACTTGAACTTTTGAAAAAAGTTTACTACTTCTGGAGCAATTTAAATCCTCCTTTTGTTTTAAAAGAATGATATTGAGTAATAACGGAACTTTGGGACATCTGTTTTCTTTACATTCTTTTTATTCTTGAAATTGAGAGGACTTATAGTCTTAAACAGCAAGCTGCAGCTCTGCCTTGCTTCAAATTTTGGTGTCTTGACCTAGGACTTATGGCGATTCTTCTGGATGCTGCTAGTTTGGTGTCTTGACCTAGTCATGTTTCTACATACACGTTCTCTGTATGATTCATAGACAGACAACTAAGATCGTGTTGTTAAATGCATTTGGATAAGAAAATGTATTTACTTCCTTGATTCTATGTTCATATGTTGTTTAGGATTCTCTCTGACAAAAGAGAAATCATATCATCAAACTTGGGCCTTGTTAGTTTCTGCTGTTTGATTGTTACCTTTTGCCTACCTTACTTTCTGTATGTATATATTTCATCTTCCAATGATTTCTTCTTTAACAGACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAA-AAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAGGTATACTTTTGTCTTGTCTAGCTCAGTTCTTAACTAAGTTGCTCGACTCAGGTGCGGGTATTCGAGAAGGATGCGAATCCGAGTATGAATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAAAATAGTTATGAAGATATTAAAAAAAAATTCAGTTGGAAATATCGTGTATATATATATATATAGTACACTTATTTTAAGAAAAAAATAAACCCTTTTTCTGCTGGTTGATGTCCTTTTCAAGAAAAATTAAAAAGAACATGTACTTTTTCAAGAAAGATAAAAAAAGGGCTCTGTATTTCCTTTACTTGTTTCAAGAAAAAAACTCTCCGTTCTTCTCTTCTCTGTAAACTCTTCCTTCTCTTCTTTGTAGTTTTTCAACTTTCTCCTCTTTACGTCGCCGTCGCTGGAACTGTTTTTCTCTTCTTCTTTTCTCTGTACTTTTTCAAGCTTTGTCCTCTTTACGTCACCGCGTCACCGGAAATTGATTTTTTCTTCCCTAATCTTTTCTCAACTTCGGTCAAAGTGTTCGGATTGGATTGAATGAATTCGACACGCATCCCGCACCCGCACCAGAGTCGCGTCTAGACGGGTTCGCCTGCATATATGAAGAGTCCGCACAACATATGTTCTTAATGCATTTTAAGCCTCTCTTTTACTATAATGTTTAACAACATATCTTCCTTACTCATTTCAGTGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAAGTGAGTTGCCTTTCTCGTTTTTACTAATAAACTACATAAATTTGATCTAACACCTGGATTTGCAGAATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAGGTTTATTATCATTCTGCCTTTTTTTCTAATTTATCTTATTTCGATTTCCTTTGCTCTTCGTAGAGGTTTGTTTGTAAATAACAACACATTAACTGATTGTTTTCCTACGTAAATTGATTATTCTGCCCTTGGAAATCAGCTTTACTGTTTCTGTTGAACTCGTTTTTGTTGATGGAAGAAAATCAAATATAAAGAATGGTTGTATATTCTACGTTCTGCAACTGTAGAATTGGCGTCGGGATTGCCAAACTCTTAAATAATTCTGGAATCTGATTTAAGCCTTCTTGTCAGTTCCATATAACAAGTAGATCGGAGTTTTATCTTTAAATGATCCTTGAATAGTTGTGGTGAAACTCAATTAAGTTTTGCTCTTTTAAGTTTTTGCTATTTGCCCCCCTTTTCTCTTCTAGGTATAGGACAGCTGAAACAAGCTCAGTGATGGAAGTCGATTATGTGGCTAATTGGAAGTAGTGCTTCATTTCAGACTTATCTGTCCATGAAATCAACCTTGTATTTTCACTTGAAATGCATGTCGCCTATTTACAACATTTAATGAAATTATTTTGCAAACAAAACTTGGCTGATCCTTTTTTTGGTTTATTTGTTTGGGGCATCCTGGTGTGAGAATTACTGGAGACATTAAATAGTTTAACTATGATATGAATATTGGTGAATAAGTGCCAATTTACATGTGCAATTGGTTTCATCCACTCTCTTTGGTTTACTTATTTGTGCCTTTGGCTTGCTTTTTATTCAGTTTGATCTCTTTTAAGCTGTTTGAATGGTATGCGTGAAAATATTTTGGAGTAGGAACAAAATTGTTTCACTCTAAAGATATGATAATTTTACCATGATGAATCTGAGATATTAAGGGCTAGTTATGACATTGTTTTCTATTCTATGGTATTATAGAGCACCATTATGTGTAGGAGAGGTAAACTCATTAATCATAGGTAGTGCAACCAAAGACCACTTTTTGGGCTTGAGTCGGTGAGTATTTTGGAGATGATTTTGTACACTCGACCAATTAGGCTAATGGGTCTGAGGTCAGTGAGCTCCTTAGCTCCCATTTTTTTTGAAATTAAAGCCAGATAGGTAGAGTTGAAGCTTTTCTCAAAGACGCACCTCTCATGAAAGTTCTTGACTGTGGCGATCACATCTTTTCCAATAACCTCCCAACAATGGGTATAGAAGGCCATGGTAAAACCATCAGGAGCAGGAGCTTTGTCACTAGCACAAAGTTTGACACTATCCTTATCTCTTGATCCTCAAATTCCTTCTAAAGCATGAAATTATCTTCAGCATTAATTTTGTGATTCATCCTGCACCCACCTGAAGGTCTCCAAGTTTCTGATTCTGAATAAGTTCTAACAGAAAACTACAATTTCCTTCTTTATGTCTTTTGGATTCCTGAATACTTCACCCCCCACATTTAGCTCATCAATATTGTTGTATCTTCTGTGTAAGTTGGTGCGCGAGTTGGCAGTTTTGTGGGAGAACTTGGTGTTGTTGTTGCCCTGTTTTAGCCAACTAACCCTTGATCTCTGTCTCCATGCAATCTCCAAACTCTTAACAGAAGCTTAGCTTTTGAGTGGATCTCCTCTTCCCCAAGAGCTCTTTGATCCTGGACTTCCTCAAATTCAGCAAATTGATTGACTATGTTCTCTTTCTGTAATGCCAAATTTCCTTGTGCTGATTTGCTACACTCTCTCAACTCAATTTTAAGTGTTTTCAGCTGAAAGGCTAAGATGAAATCTGGCCTTCCTTCACAGTCAAAGGACCTCCACCATTCCTTGATTCTATCTAAAAAACCCTCAGTCTGCAGCCACCAATTTTCGAATTTAAAATAGGACCTCACAGGCTACCGAAACCATCAGTCTGCAGCCACTAATTTTCGAATTTAAAATAGGACCTCACAGGCTACCAATTCCCACATTGTATTAGAATTGGTGAGTGATCAGAAGTGACCTTTTGCAGGATTGATTGCTTGTTATTTTTGAAGCCTCCATTCCACTCATCAGACACTAGAAACCTATCTAGCCTAGCTGCAATTTCATGTTCCCCCATGTGTAACTTCTTACTGCTAATTGAAGGTCCAACAAGCTCATATCTTCAATGAAATCAGGGAGGTCAGACATCAATTTTGTGATTCTTGAACAATTTTTCTTCTCAGAGAGGAATCTAACTGTGTTGAGATCCCCACAAACTACCCAAGGGCCGTTGAACAGGCCTCTAGCTGACCCAACTTCCCACAAATCTTCTTCTCTTTCTTCTCTACTATTTGGAGCATAGATGCCAATAAGTACTGGTGAAGTCAAGACTTTTACCTATGAACTTGCAGGATATAGAGCATGCTTCCACACTGCTAACCTGCCCTGTCCAAACCTTCCCGTCCCAAATAATTAGGATGTCCCCGCTAGTACCACGAGCTTCAAGTTGACAAAATTCCACTCCTCAGTTTGCCCATAAATCTTTAATAATGTTTCTCACATCCCCTATAATCTTGGTCTCTTGGAAGCAATAAACATCAGCCTTCCACCCTTGGATAGATTCTTGATTACACACCTCTTATTTGCCTGATTCAGGCTTCTCCATTCCATGAAATTATCTTGACTGTCATTTATCACTAGCTAATGTTTAACCCTCCCTGCTTCTGGTACCATTATTTCTGAAGTTGCTCCCACATCCTAGGCTCTTAAGTTCTTTTGAGCCTTTAACTACTGAAGTTGAATTCAAGTTCTTCCCACCCAGTCAGTGTTATTCTGTCTCATACTATTGATCTTCATAAACAACCTCGTAGCTTCCTCTTTGCATCCCTTAGTGTTTACTCCGAAATCCTTTGCTAATTTTATGTTCTGATAGATCCAAATCGGAACGTCAAGCTCTGAATCATCTTCTTCCTCTGGACTACGTGGTTTAAAGGAACTACATCTTCAATTATTGTCAAAGAGTAGTTCTCTTCACCTCTCTGTGAATCAAGTTTTTGAAAGCAATAGTTTTCCAAATGCAGAATGAGAATCAGGAAGGTCTGGGCACTTGTTTGACACTTCCACTGTTTCTCTATCAACATTATCTTCTGTATCAGCTTCCTTCTCCATCGCATTTTCTTCCAGTTCTGTTCCTTCTATTTTTTTTGCACCTTGAAGCTGATGGAGGAATAGAAGTGGCTTCAAGTTCCGCAGTGATTGGCTCATTTAGCTGAGAGAAGGAGTTTTCAATGAGAGGCCCACTTAAAATGAATTGTGCCAGCAGATCCGGGCCCATTTTTTCGCCCTATCTTACATATTTGGATTTCTTAGGAATCGAATTGTTGAACGGTACAAAGGTTCACGTGCTGGTACAGCAGGTTGTTTCAAAATTGCTGGATCCTACGAGGAATCCACGTGTGCAGAAACCTCTGTAAAGCTTAAAAGGCTCTCATCCCCTCTATGTCCAATCAATCTTTGGACCTGGTTGTTAGGGACAACTGGAATTCTCTCATCGGTAACCACCCTCGCAGATGTTTCCACCCAAATCTTAACTTTGAAAGTCAAACCCTCATGAACCAGCTGTGCTGAATAAGGGACAAAATAGCCATCACCTCTCACCTTTAACCTCGCCCATTCAAGTGATTACAAAGCTCCGTCTCTTCTTCAGTTTGAATCCAACCTCCACAGAAATTCCCGATCTCCCGGAAGACTTTCTTGGACCAAAGTTGGAGGGGTAAACCCACTATCCTGATCCAAATCTGATCCGGCTTTTCATGGATGGAGTTCGAAGTCGGCGACCACCTTGAAGATTGAACTTGTGTGTTTTCCAGAACCATTTTCCTCTTACTATGTGTTCTGCAACAGTTTTATTGGGGAGTTCAAATAAAAATCAATTATTCCCCAAGTCATAGATATTGATGCCATGATGATGTCTCCAGGTACTCCCAACCCATCTATGAATCTCCGACAAAATGATATCTGGGATCTCCTCCGGCAGAGTTACACTCTTAGCTAGTATGTCATACTGGGTTTTTGGTATGGCATCTGTAATAACCAGCAAATTTCCTTTTTGTTGTATCTTGGCATCAGTAAAGTCTCTTGTAGTCCATTTATTACTTCTGACAGTATCGAATATGATAGGCCCTCTGTTTCCCTGTGTGTTGTATTAACTGTTCTCTGAACCTTAACATTGATAAAAATTGATAATTTGCAATTCCATCCATCCGGAATTTTGAGACCACTCCGGGATGATGATCACTGCTCTTCTCCTACCCTGCATGTTAATGATGCTGATGTATCGACCATATTTGTTGAAATTTCTTGAGCAAAAGAATTCTGAAAAAAGATCCTTTAACTTCCAGCTGCGAACTGAGTTCCCTTGTCCTTGTGAAGCTTCTTTAAGAGCGTAAATCAACCATTCCATGTCTTCTGGTTAAAGCTCATCCTTGTTATCTCGTTACGGCCTCTTTCTATCCAGTCATACCATGTATCTGTTGTAGGCCTACCGCGAAAAAAATGGTGTCCACTCCCATGAGAGAGTGCCGGTGACCTGTGAAGCGATTGGCGTCCCACGCGATAGGCGTGTGAGGCGCGTGGCGTCGGTGTCTGATGGAGAAAGGAGGCGCGTGGGAGCGCATGAGGTGTTTTTTGAGGATGGGTATTTTTGGGGTAGGGTCGGAATAGGGTGAAGGAGGTTGTGATGGAGGCAATTGGAAGAAGGAGAAAGAGAGATGGAATTCCGGTGGTCAGAAGGACCACCGGATAGGTTTTCTGGGTAGTGAGAGGATTTTAAAAGTTACATCGGGATTAGTGCCTGGGAGAATTAAAAAAGTAGAACATCCTGCTATATTGTGCACATTTTGTGGTTAACTTAAAAGATCTTTCAAGCTTTCTGCTGAATGTGCTTAAGGTGGAGTAGGGAAGATAATGATAAATATATTGTGAGAAATTGTATTGAAGGCTCAATGCTCTTCACTGGCTTATACCTTCTGGCCTTGTCACATCTTCCCTTCCTCAGAATGTTTTTTATTTCCTTTTCCATCTTTATGCTCAAGTCATTGTGTACTAACACTATGGTATTTGATCTTTTTTTCAAAAGAACCTATGGACACACAAATAAGTTTGACTTGATCATTTATTCATCTACATGATATAAGGTGGTTACATGACTATATGATATTTTCCCCGAGACAAAAGAAAAAGACTTCCTCTGGCATGCTGTTTGTTTTTTGTTTTCTTGTAAGTAAGCCATTTTCTTTGATTACGTGATAGGTTATTGATCTAAGTACGTTTTTTTCAGAACATTAATAAATTGAATAATCTTCTTTGGTTTAGGATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATAT-TTGTA-AAGAAGAAGGTCTTAAT-CTAGATTCAGAGGTGTGGGGATATAGTAACTTGATTCCTTTTTTGTAACTACTGTTTGCTTCATTCATTTAATTGATGGTTCAATTGTCACTTTGGAATTAAGCTATATATAGGAGTGTGTCATCTGATTGCAGGCTCTTTCTACCCTCAGTTCAATTTCTCAAGG-TGATTTGCGAAGGGCTATTACATA-CTTACAA</genome_strand>
        <mrna_strand>AACAAAGAGAACAGCTATGGCGCCAGTTATGCAAAGCTCTCAGCCATGGGTCGAGAAATA...........................................................................TCGACCGAAGAAAGTGAAGGATGTAGCTCACCAGGATGAGGTCGTCTCGAGTTCTCACCAACACTCTCGAGACCTCTAAC..................................................................................................................................................................TGCCCGCATATGTTGTTTTATGGTCCTCCTGGGAACTGGAAAGACGACCATTGCTCTTGGCCATTGCCCATCAGCTTTTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGAGCTGTATAAGTCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGCACAAGAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAA.................................................................AATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATAGAGCCACTTGCTTCCAGATGTGCGAAGTTTAGATTCAAGCCACTTCCTGAAGAAGTAATGGGCAGCCGAATATTGCATATCTTGTACAAGAGGAAGGTCTTAATCCTAGATTCAGAG..........................................................................................................................GCTCTTTCTACCCTCAGTTCCATTTCTCAAGGTTGATTCGCGAAGGGCTATTACATACCTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578687" ref_strand="+" ref_description="SGN-E578687 [85807]">
      <seq>gagaacagctatggcgccagttatgcaaagctctcagccatgggtcgagaaatatcgaccgaagaaagtgaaggatgtagctcaccaggatgaggtcgttcgagttctcaccaacactctcgagacctctaactgcccgcatatgctgttttatggtcctcctggaactggaaagacgaccactgctcttgccattgcccatcagctttttggacctgagctgtataagtcgagggtattggagctaaatgctagtgatgaccgtggtatcaatgtagttcgcacaaaaattaagaactttgctgctgttgctgtaggttctaatcggcaaagtggttatccttgcccaccttttaagatcataatccttgatgaagcagattcaatgactcaagatgctcaaaatgccttgcgacgaactatggagacatattcaaaagttacaagattcttcttcatttgtaattacatcagcaggatcatagagccacttgcttccagatgtgcgaagtttagattcaagccacttcctgaagaaataatgggcagccgaatattgcatatttgtaaagaggaaggtcttaatctagattcagagactatatatagagaagtgtgtcatctgattgcaggctctttctaccctcagttccatttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="97290" stop="88684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96990" g_stop="96937" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96936" i_stop="96862" i_length="75">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96861" g_stop="96783" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="133" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96782" i_stop="96621" i_length="162">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.923" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96620" g_stop="96541" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="213" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96540" i_stop="95595" i_length="946">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95594" g_stop="95475" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="333" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95474" i_stop="94768" i_length="707">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94767" g_stop="94698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="403" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94697" i_stop="94633" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94632" g_stop="94559" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="477" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94558" i_stop="89256" i_length="5303">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89255" g_stop="89135" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="598" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89134" i_stop="89047" i_length="88">
            <donor d_prob="0.548" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89046" g_stop="88984" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="661" r_length="63" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E578687" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96990" e_stop="96937"/>
          <exon e_start="96861" e_stop="96783"/>
          <exon e_start="96620" e_stop="96541"/>
          <exon e_start="95594" e_stop="95475"/>
          <exon e_start="94767" e_stop="94698"/>
          <exon e_start="94632" e_stop="94559"/>
          <exon e_start="89255" e_stop="89135"/>
          <exon e_start="89046" e_stop="88984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATAGTAACCTTCCAATTAACTTAGCTCCTCTTTTCTAGCTCTCAGCCATGGAAATGTAACTTTTGGAAATTTTTGCAGTCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAACGTAAACCATCACTTTCATTTGATTGATTTACTGCTAAGCACATTAAACACTTACTGCCTAGGGTTTTCTTTAATTTCCTGTTGAGAATACAGAATTCAGCATTCTTTACGTGAAGAAACAAACATCAGTACTAAGTTATTATCATTTTTTTATTTGTTATAGTGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGGGTATGTTTTTAAGTTGTGTGTGGATTTTACTTGGGGTTCTCCCTAGTTGATGTTAACTTTTTTTGAACTGGTAACATTCCTAGTGGATGTCAATTTCATTTAGAAATTGGTAGTTTTGGGGGAGTTGATTATGTATAAGTTTCTATTGATGTGATTCCTGAAAATCAATATCTATTTTAGTAAAAATAGAAGTGTTTTTATATGTTAATTTCATGGGAATTTGTAGTTCGGTGGAATTGATTATGAATAAGTCTGTATAAATATGATTCCTGAAAATCCCTTTCTGCCTTTCAGTTGCCTAATGACCTATAATGCTAGTCGCTATCCAATTGGGGCTAGGAGTTTCTATCTTACACTGTTTCTAGTTTAGCAAAGAAAAGTAATTTCGTTCTTCTGCGAAAAGTTGATTCGAAATTCAAGTGTGAAGAGGAATAAGACTTGAACTTTTGAAAAAAGTTTACTACTTCTGGAGCAATTTAAATCCTCCTTTTGTTTTAAAAGAATGATATTGAGTAATAACGGAACTTTGGGACATCTGTTTTCTTTACATTCTTTTTATTCTTGAAATTGAGAGGACTTATAGTCTTAAACAGCAAGCTGCAGCTCTGCCTTGCTTCAAATTTTGGTGTCTTGACCTAGGACTTATGGCGATTCTTCTGGATGCTGCTAGTTTGGTGTCTTGACCTAGTCATGTTTCTACATACACGTTCTCTGTATGATTCATAGACAGACAACTAAGATCGTGTTGTTAAATGCATTTGGATAAGAAAATGTATTTACTTCCTTGATTCTATGTTCATATGTTGTTTAGGATTCTCTCTGACAAAAGAGAAATCATATCATCAAACTTGGGCCTTGTTAGTTTCTGCTGTTTGATTGTTACCTTTTGCCTACCTTACTTTCTGTATGTATATATTTCATCTTCCAATGATTTCTTCTTTAACAGACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAGGTATACTTTTGTCTTGTCTAGCTCAGTTCTTAACTAAGTTGCTCGACTCAGGTGCGGGTATTCGAGAAGGATGCGAATCCGAGTATGAATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAAAATAGTTATGAAGATATTAAAAAAAAATTCAGTTGGAAATATCGTGTATATATATATATATAGTACACTTATTTTAAGAAAAAAATAAACCCTTTTTCTGCTGGTTGATGTCCTTTTCAAGAAAAATTAAAAAGAACATGTACTTTTTCAAGAAAGATAAAAAAAGGGCTCTGTATTTCCTTTACTTGTTTCAAGAAAAAAACTCTCCGTTCTTCTCTTCTCTGTAAACTCTTCCTTCTCTTCTTTGTAGTTTTTCAACTTTCTCCTCTTTACGTCGCCGTCGCTGGAACTGTTTTTCTCTTCTTCTTTTCTCTGTACTTTTTCAAGCTTTGTCCTCTTTACGTCACCGCGTCACCGGAAATTGATTTTTTCTTCCCTAATCTTTTCTCAACTTCGGTCAAAGTGTTCGGATTGGATTGAATGAATTCGACACGCATCCCGCACCCGCACCAGAGTCGCGTCTAGACGGGTTCGCCTGCATATATGAAGAGTCCGCACAACATATGTTCTTAATGCATTTTAAGCCTCTCTTTTACTATAATGTTTAACAACATATCTTCCTTACTCATTTCAGTGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAAGTGAGTTGCCTTTCTCGTTTTTACTAATAAACTACATAAATTTGATCTAACACCTGGATTTGCAGAATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAGGTTTATTATCATTCTGCCTTTTTTTCTAATTTATCTTATTTCGATTTCCTTTGCTCTTCGTAGAGGTTTGTTTGTAAATAACAACACATTAACTGATTGTTTTCCTACGTAAATTGATTATTCTGCCCTTGGAAATCAGCTTTACTGTTTCTGTTGAACTCGTTTTTGTTGATGGAAGAAAATCAAATATAAAGAATGGTTGTATATTCTACGTTCTGCAACTGTAGAATTGGCGTCGGGATTGCCAAACTCTTAAATAATTCTGGAATCTGATTTAAGCCTTCTTGTCAGTTCCATATAACAAGTAGATCGGAGTTTTATCTTTAAATGATCCTTGAATAGTTGTGGTGAAACTCAATTAAGTTTTGCTCTTTTAAGTTTTTGCTATTTGCCCCCCTTTTCTCTTCTAGGTATAGGACAGCTGAAACAAGCTCAGTGATGGAAGTCGATTATGTGGCTAATTGGAAGTAGTGCTTCATTTCAGACTTATCTGTCCATGAAATCAACCTTGTATTTTCACTTGAAATGCATGTCGCCTATTTACAACATTTAATGAAATTATTTTGCAAACAAAACTTGGCTGATCCTTTTTTTGGTTTATTTGTTTGGGGCATCCTGGTGTGAGAATTACTGGAGACATTAAATAGTTTAACTATGATATGAATATTGGTGAATAAGTGCCAATTTACATGTGCAATTGGTTTCATCCACTCTCTTTGGTTTACTTATTTGTGCCTTTGGCTTGCTTTTTATTCAGTTTGATCTCTTTTAAGCTGTTTGAATGGTATGCGTGAAAATATTTTGGAGTAGGAACAAAATTGTTTCACTCTAAAGATATGATAATTTTACCATGATGAATCTGAGATATTAAGGGCTAGTTATGACATTGTTTTCTATTCTATGGTATTATAGAGCACCATTATGTGTAGGAGAGGTAAACTCATTAATCATAGGTAGTGCAACCAAAGACCACTTTTTGGGCTTGAGTCGGTGAGTATTTTGGAGATGATTTTGTACACTCGACCAATTAGGCTAATGGGTCTGAGGTCAGTGAGCTCCTTAGCTCCCATTTTTTTTGAAATTAAAGCCAGATAGGTAGAGTTGAAGCTTTTCTCAAAGACGCACCTCTCATGAAAGTTCTTGACTGTGGCGATCACATCTTTTCCAATAACCTCCCAACAATGGGTATAGAAGGCCATGGTAAAACCATCAGGAGCAGGAGCTTTGTCACTAGCACAAAGTTTGACACTATCCTTATCTCTTGATCCTCAAATTCCTTCTAAAGCATGAAATTATCTTCAGCATTAATTTTGTGATTCATCCTGCACCCACCTGAAGGTCTCCAAGTTTCTGATTCTGAATAAGTTCTAACAGAAAACTACAATTTCCTTCTTTATGTCTTTTGGATTCCTGAATACTTCACCCCCCACATTTAGCTCATCAATATTGTTGTATCTTCTGTGTAAGTTGGTGCGCGAGTTGGCAGTTTTGTGGGAGAACTTGGTGTTGTTGTTGCCCTGTTTTAGCCAACTAACCCTTGATCTCTGTCTCCATGCAATCTCCAAACTCTTAACAGAAGCTTAGCTTTTGAGTGGATCTCCTCTTCCCCAAGAGCTCTTTGATCCTGGACTTCCTCAAATTCAGCAAATTGATTGACTATGTTCTCTTTCTGTAATGCCAAATTTCCTTGTGCTGATTTGCTACACTCTCTCAACTCAATTTTAAGTGTTTTCAGCTGAAAGGCTAAGATGAAATCTGGCCTTCCTTCACAGTCAAAGGACCTCCACCATTCCTTGATTCTATCTAAAAAACCCTCAGTCTGCAGCCACCAATTTTCGAATTTAAAATAGGACCTCACAGGCTACCGAAACCATCAGTCTGCAGCCACTAATTTTCGAATTTAAAATAGGACCTCACAGGCTACCAATTCCCACATTGTATTAGAATTGGTGAGTGATCAGAAGTGACCTTTTGCAGGATTGATTGCTTGTTATTTTTGAAGCCTCCATTCCACTCATCAGACACTAGAAACCTATCTAGCCTAGCTGCAATTTCATGTTCCCCCATGTGTAACTTCTTACTGCTAATTGAAGGTCCAACAAGCTCATATCTTCAATGAAATCAGGGAGGTCAGACATCAATTTTGTGATTCTTGAACAATTTTTCTTCTCAGAGAGGAATCTAACTGTGTTGAGATCCCCACAAACTACCCAAGGGCCGTTGAACAGGCCTCTAGCTGACCCAACTTCCCACAAATCTTCTTCTCTTTCTTCTCTACTATTTGGAGCATAGATGCCAATAAGTACTGGTGAAGTCAAGACTTTTACCTATGAACTTGCAGGATATAGAGCATGCTTCCACACTGCTAACCTGCCCTGTCCAAACCTTCCCGTCCCAAATAATTAGGATGTCCCCGCTAGTACCACGAGCTTCAAGTTGACAAAATTCCACTCCTCAGTTTGCCCATAAATCTTTAATAATGTTTCTCACATCCCCTATAATCTTGGTCTCTTGGAAGCAATAAACATCAGCCTTCCACCCTTGGATAGATTCTTGATTACACACCTCTTATTTGCCTGATTCAGGCTTCTCCATTCCATGAAATTATCTTGACTGTCATTTATCACTAGCTAATGTTTAACCCTCCCTGCTTCTGGTACCATTATTTCTGAAGTTGCTCCCACATCCTAGGCTCTTAAGTTCTTTTGAGCCTTTAACTACTGAAGTTGAATTCAAGTTCTTCCCACCCAGTCAGTGTTATTCTGTCTCATACTATTGATCTTCATAAACAACCTCGTAGCTTCCTCTTTGCATCCCTTAGTGTTTACTCCGAAATCCTTTGCTAATTTTATGTTCTGATAGATCCAAATCGGAACGTCAAGCTCTGAATCATCTTCTTCCTCTGGACTACGTGGTTTAAAGGAACTACATCTTCAATTATTGTCAAAGAGTAGTTCTCTTCACCTCTCTGTGAATCAAGTTTTTGAAAGCAATAGTTTTCCAAATGCAGAATGAGAATCAGGAAGGTCTGGGCACTTGTTTGACACTTCCACTGTTTCTCTATCAACATTATCTTCTGTATCAGCTTCCTTCTCCATCGCATTTTCTTCCAGTTCTGTTCCTTCTATTTTTTTTGCACCTTGAAGCTGATGGAGGAATAGAAGTGGCTTCAAGTTCCGCAGTGATTGGCTCATTTAGCTGAGAGAAGGAGTTTTCAATGAGAGGCCCACTTAAAATGAATTGTGCCAGCAGATCCGGGCCCATTTTTTCGCCCTATCTTACATATTTGGATTTCTTAGGAATCGAATTGTTGAACGGTACAAAGGTTCACGTGCTGGTACAGCAGGTTGTTTCAAAATTGCTGGATCCTACGAGGAATCCACGTGTGCAGAAACCTCTGTAAAGCTTAAAAGGCTCTCATCCCCTCTATGTCCAATCAATCTTTGGACCTGGTTGTTAGGGACAACTGGAATTCTCTCATCGGTAACCACCCTCGCAGATGTTTCCACCCAAATCTTAACTTTGAAAGTCAAACCCTCATGAACCAGCTGTGCTGAATAAGGGACAAAATAGCCATCACCTCTCACCTTTAACCTCGCCCATTCAAGTGATTACAAAGCTCCGTCTCTTCTTCAGTTTGAATCCAACCTCCACAGAAATTCCCGATCTCCCGGAAGACTTTCTTGGACCAAAGTTGGAGGGGTAAACCCACTATCCTGATCCAAATCTGATCCGGCTTTTCATGGATGGAGTTCGAAGTCGGCGACCACCTTGAAGATTGAACTTGTGTGTTTTCCAGAACCATTTTCCTCTTACTATGTGTTCTGCAACAGTTTTATTGGGGAGTTCAAATAAAAATCAATTATTCCCCAAGTCATAGATATTGATGCCATGATGATGTCTCCAGGTACTCCCAACCCATCTATGAATCTCCGACAAAATGATATCTGGGATCTCCTCCGGCAGAGTTACACTCTTAGCTAGTATGTCATACTGGGTTTTTGGTATGGCATCTGTAATAACCAGCAAATTTCCTTTTTGTTGTATCTTGGCATCAGTAAAGTCTCTTGTAGTCCATTTATTACTTCTGACAGTATCGAATATGATAGGCCCTCTGTTTCCCTGTGTGTTGTATTAACTGTTCTCTGAACCTTAACATTGATAAAAATTGATAATTTGCAATTCCATCCATCCGGAATTTTGAGACCACTCCGGGATGATGATCACTGCTCTTCTCCTACCCTGCATGTTAATGATGCTGATGTATCGACCATATTTGTTGAAATTTCTTGAGCAAAAGAATTCTGAAAAAAGATCCTTTAACTTCCAGCTGCGAACTGAGTTCCCTTGTCCTTGTGAAGCTTCTTTAAGAGCGTAAATCAACCATTCCATGTCTTCTGGTTAAAGCTCATCCTTGTTATCTCGTTACGGCCTCTTTCTATCCAGTCATACCATGTATCTGTTGTAGGCCTACCGCGAAAAAAATGGTGTCCACTCCCATGAGAGAGTGCCGGTGACCTGTGAAGCGATTGGCGTCCCACGCGATAGGCGTGTGAGGCGCGTGGCGTCGGTGTCTGATGGAGAAAGGAGGCGCGTGGGAGCGCATGAGGTGTTTTTTGAGGATGGGTATTTTTGGGGTAGGGTCGGAATAGGGTGAAGGAGGTTGTGATGGAGGCAATTGGAAGAAGGAGAAAGAGAGATGGAATTCCGGTGGTCAGAAGGACCACCGGATAGGTTTTCTGGGTAGTGAGAGGATTTTAAAAGTTACATCGGGATTAGTGCCTGGGAGAATTAAAAAAGTAGAACATCCTGCTATATTGTGCACATTTTGTGGTTAACTTAAAAGATCTTTCAAGCTTTCTGCTGAATGTGCTTAAGGTGGAGTAGGGAAGATAATGATAAATATATTGTGAGAAATTGTATTGAAGGCTCAATGCTCTTCACTGGCTTATACCTTCTGGCCTTGTCACATCTTCCCTTCCTCAGAATGTTTTTTATTTCCTTTTCCATCTTTATGCTCAAGTCATTGTGTACTAACACTATGGTATTTGATCTTTTTTTCAAAAGAACCTATGGACACACAAATAAGTTTGACTTGATCATTTATTCATCTACATGATATAAGGTGGTTACATGACTATATGATATTTTCCCCGAGACAAAAGAAAAAGACTTCCTCTGGCATGCTGTTTGTTTTTTGTTTTCTTGTAAGTAAGCCATTTTCTTTGATTACGTGATAGGTTATTGATCTAAGTACGTTTTTTTCAGAACATTAATAAATTGAATAATCTTCTTTGGTTTAGGATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAAGAAGGTCTTAATCTAGATTCAGAGGTGTGGGGATATAGTAACTTGATTCCTTTTTTGTAACTACTGTTTGCTTCATTCATTTAATTGATGGTTCAATTGTCACTTTGGAATTAAGCTATATATAGGAGTGTGTCATCTGATTGCAGGCTCTTTCTACCCTCAGTTCAATTTCTCA</genome_strand>
        <mrna_strand>GAGAACAGCTATGGCGCCAGTTATGCAAAGCTCTCAGCCATGGGTCGAGAAATA...........................................................................TCGACCGAAGAAAGTGAAGGATGTAGCTCACCAGGATGAGGTCGTTCGAGTTCTCACCAACACTCTCGAGACCTCTAAC..................................................................................................................................................................TGCCCGCATATGCTGTTTTATGGTCCTCCTGGAACTGGAAAGACGACCACTGCTCTTGCCATTGCCCATCAGCTTTTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGAGCTGTATAAGTCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGCACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAA.................................................................AATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATAGAGCCACTTGCTTCCAGATGTGCGAAGTTTAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAGGAAGGTCTTAATCTAGATTCAGAG........................................................................................ACTATATATAGAGAAGTGTGTCATCTGATTGCAGGCTCTTTCTACCCTCAGTTCCATTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338281" ref_strand="+" ref_description="SGN-E338281 [cTOE-13-M24]">
      <seq>actgctcttgccattgcccatcagcttttcggacctgagctgtataaatcgagggtattggagctaaatgctagtgatgaccgtggtatcaatgtagttcgtacaaaaattaagaactttgctgctgttgctgtaggttctaatcggcaaagtggttatccttgcccaccttttaagatcataatccttgatgaagcagattcaatgactcaagatgctcaaaatgccttgcgacgaactatggagacatattcaaaagttacaagattcttcttcatttgtaattacatcagcaggatcatagagccacttgcttctagatgtgcgaagttcagattcaagccacttcctgaagaaataatgggcagccgaatattgcatatttgtaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="96872" stop="88859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96572" g_stop="96541" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96540" i_stop="95595" i_length="946">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95594" g_stop="95475" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="152" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95474" i_stop="94768" i_length="707">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94767" g_stop="94698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="222" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94697" i_stop="94633" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94632" g_stop="94559" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="296" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94558" i_stop="89256" i_length="5303">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89255" g_stop="89159" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="393" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E338281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96572" e_stop="96541"/>
          <exon e_start="95594" e_stop="95475"/>
          <exon e_start="94767" e_stop="94698"/>
          <exon e_start="94632" e_stop="94559"/>
          <exon e_start="89255" e_stop="89159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCTCTTGCCATTGCCCATCAGCTTTTCGGGTATGTTTTTAAGTTGTGTGTGGATTTTACTTGGGGTTCTCCCTAGTTGATGTTAACTTTTTTTGAACTGGTAACATTCCTAGTGGATGTCAATTTCATTTAGAAATTGGTAGTTTTGGGGGAGTTGATTATGTATAAGTTTCTATTGATGTGATTCCTGAAAATCAATATCTATTTTAGTAAAAATAGAAGTGTTTTTATATGTTAATTTCATGGGAATTTGTAGTTCGGTGGAATTGATTATGAATAAGTCTGTATAAATATGATTCCTGAAAATCCCTTTCTGCCTTTCAGTTGCCTAATGACCTATAATGCTAGTCGCTATCCAATTGGGGCTAGGAGTTTCTATCTTACACTGTTTCTAGTTTAGCAAAGAAAAGTAATTTCGTTCTTCTGCGAAAAGTTGATTCGAAATTCAAGTGTGAAGAGGAATAAGACTTGAACTTTTGAAAAAAGTTTACTACTTCTGGAGCAATTTAAATCCTCCTTTTGTTTTAAAAGAATGATATTGAGTAATAACGGAACTTTGGGACATCTGTTTTCTTTACATTCTTTTTATTCTTGAAATTGAGAGGACTTATAGTCTTAAACAGCAAGCTGCAGCTCTGCCTTGCTTCAAATTTTGGTGTCTTGACCTAGGACTTATGGCGATTCTTCTGGATGCTGCTAGTTTGGTGTCTTGACCTAGTCATGTTTCTACATACACGTTCTCTGTATGATTCATAGACAGACAACTAAGATCGTGTTGTTAAATGCATTTGGATAAGAAAATGTATTTACTTCCTTGATTCTATGTTCATATGTTGTTTAGGATTCTCTCTGACAAAAGAGAAATCATATCATCAAACTTGGGCCTTGTTAGTTTCTGCTGTTTGATTGTTACCTTTTGCCTACCTTACTTTCTGTATGTATATATTTCATCTTCCAATGATTTCTTCTTTAACAGACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAGGTATACTTTTGTCTTGTCTAGCTCAGTTCTTAACTAAGTTGCTCGACTCAGGTGCGGGTATTCGAGAAGGATGCGAATCCGAGTATGAATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAAAATAGTTATGAAGATATTAAAAAAAAATTCAGTTGGAAATATCGTGTATATATATATATATAGTACACTTATTTTAAGAAAAAAATAAACCCTTTTTCTGCTGGTTGATGTCCTTTTCAAGAAAAATTAAAAAGAACATGTACTTTTTCAAGAAAGATAAAAAAAGGGCTCTGTATTTCCTTTACTTGTTTCAAGAAAAAAACTCTCCGTTCTTCTCTTCTCTGTAAACTCTTCCTTCTCTTCTTTGTAGTTTTTCAACTTTCTCCTCTTTACGTCGCCGTCGCTGGAACTGTTTTTCTCTTCTTCTTTTCTCTGTACTTTTTCAAGCTTTGTCCTCTTTACGTCACCGCGTCACCGGAAATTGATTTTTTCTTCCCTAATCTTTTCTCAACTTCGGTCAAAGTGTTCGGATTGGATTGAATGAATTCGACACGCATCCCGCACCCGCACCAGAGTCGCGTCTAGACGGGTTCGCCTGCATATATGAAGAGTCCGCACAACATATGTTCTTAATGCATTTTAAGCCTCTCTTTTACTATAATGTTTAACAACATATCTTCCTTACTCATTTCAGTGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAAGTGAGTTGCCTTTCTCGTTTTTACTAATAAACTACATAAATTTGATCTAACACCTGGATTTGCAGAATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAGGTTTATTATCATTCTGCCTTTTTTTCTAATTTATCTTATTTCGATTTCCTTTGCTCTTCGTAGAGGTTTGTTTGTAAATAACAACACATTAACTGATTGTTTTCCTACGTAAATTGATTATTCTGCCCTTGGAAATCAGCTTTACTGTTTCTGTTGAACTCGTTTTTGTTGATGGAAGAAAATCAAATATAAAGAATGGTTGTATATTCTACGTTCTGCAACTGTAGAATTGGCGTCGGGATTGCCAAACTCTTAAATAATTCTGGAATCTGATTTAAGCCTTCTTGTCAGTTCCATATAACAAGTAGATCGGAGTTTTATCTTTAAATGATCCTTGAATAGTTGTGGTGAAACTCAATTAAGTTTTGCTCTTTTAAGTTTTTGCTATTTGCCCCCCTTTTCTCTTCTAGGTATAGGACAGCTGAAACAAGCTCAGTGATGGAAGTCGATTATGTGGCTAATTGGAAGTAGTGCTTCATTTCAGACTTATCTGTCCATGAAATCAACCTTGTATTTTCACTTGAAATGCATGTCGCCTATTTACAACATTTAATGAAATTATTTTGCAAACAAAACTTGGCTGATCCTTTTTTTGGTTTATTTGTTTGGGGCATCCTGGTGTGAGAATTACTGGAGACATTAAATAGTTTAACTATGATATGAATATTGGTGAATAAGTGCCAATTTACATGTGCAATTGGTTTCATCCACTCTCTTTGGTTTACTTATTTGTGCCTTTGGCTTGCTTTTTATTCAGTTTGATCTCTTTTAAGCTGTTTGAATGGTATGCGTGAAAATATTTTGGAGTAGGAACAAAATTGTTTCACTCTAAAGATATGATAATTTTACCATGATGAATCTGAGATATTAAGGGCTAGTTATGACATTGTTTTCTATTCTATGGTATTATAGAGCACCATTATGTGTAGGAGAGGTAAACTCATTAATCATAGGTAGTGCAACCAAAGACCACTTTTTGGGCTTGAGTCGGTGAGTATTTTGGAGATGATTTTGTACACTCGACCAATTAGGCTAATGGGTCTGAGGTCAGTGAGCTCCTTAGCTCCCATTTTTTTTGAAATTAAAGCCAGATAGGTAGAGTTGAAGCTTTTCTCAAAGACGCACCTCTCATGAAAGTTCTTGACTGTGGCGATCACATCTTTTCCAATAACCTCCCAACAATGGGTATAGAAGGCCATGGTAAAACCATCAGGAGCAGGAGCTTTGTCACTAGCACAAAGTTTGACACTATCCTTATCTCTTGATCCTCAAATTCCTTCTAAAGCATGAAATTATCTTCAGCATTAATTTTGTGATTCATCCTGCACCCACCTGAAGGTCTCCAAGTTTCTGATTCTGAATAAGTTCTAACAGAAAACTACAATTTCCTTCTTTATGTCTTTTGGATTCCTGAATACTTCACCCCCCACATTTAGCTCATCAATATTGTTGTATCTTCTGTGTAAGTTGGTGCGCGAGTTGGCAGTTTTGTGGGAGAACTTGGTGTTGTTGTTGCCCTGTTTTAGCCAACTAACCCTTGATCTCTGTCTCCATGCAATCTCCAAACTCTTAACAGAAGCTTAGCTTTTGAGTGGATCTCCTCTTCCCCAAGAGCTCTTTGATCCTGGACTTCCTCAAATTCAGCAAATTGATTGACTATGTTCTCTTTCTGTAATGCCAAATTTCCTTGTGCTGATTTGCTACACTCTCTCAACTCAATTTTAAGTGTTTTCAGCTGAAAGGCTAAGATGAAATCTGGCCTTCCTTCACAGTCAAAGGACCTCCACCATTCCTTGATTCTATCTAAAAAACCCTCAGTCTGCAGCCACCAATTTTCGAATTTAAAATAGGACCTCACAGGCTACCGAAACCATCAGTCTGCAGCCACTAATTTTCGAATTTAAAATAGGACCTCACAGGCTACCAATTCCCACATTGTATTAGAATTGGTGAGTGATCAGAAGTGACCTTTTGCAGGATTGATTGCTTGTTATTTTTGAAGCCTCCATTCCACTCATCAGACACTAGAAACCTATCTAGCCTAGCTGCAATTTCATGTTCCCCCATGTGTAACTTCTTACTGCTAATTGAAGGTCCAACAAGCTCATATCTTCAATGAAATCAGGGAGGTCAGACATCAATTTTGTGATTCTTGAACAATTTTTCTTCTCAGAGAGGAATCTAACTGTGTTGAGATCCCCACAAACTACCCAAGGGCCGTTGAACAGGCCTCTAGCTGACCCAACTTCCCACAAATCTTCTTCTCTTTCTTCTCTACTATTTGGAGCATAGATGCCAATAAGTACTGGTGAAGTCAAGACTTTTACCTATGAACTTGCAGGATATAGAGCATGCTTCCACACTGCTAACCTGCCCTGTCCAAACCTTCCCGTCCCAAATAATTAGGATGTCCCCGCTAGTACCACGAGCTTCAAGTTGACAAAATTCCACTCCTCAGTTTGCCCATAAATCTTTAATAATGTTTCTCACATCCCCTATAATCTTGGTCTCTTGGAAGCAATAAACATCAGCCTTCCACCCTTGGATAGATTCTTGATTACACACCTCTTATTTGCCTGATTCAGGCTTCTCCATTCCATGAAATTATCTTGACTGTCATTTATCACTAGCTAATGTTTAACCCTCCCTGCTTCTGGTACCATTATTTCTGAAGTTGCTCCCACATCCTAGGCTCTTAAGTTCTTTTGAGCCTTTAACTACTGAAGTTGAATTCAAGTTCTTCCCACCCAGTCAGTGTTATTCTGTCTCATACTATTGATCTTCATAAACAACCTCGTAGCTTCCTCTTTGCATCCCTTAGTGTTTACTCCGAAATCCTTTGCTAATTTTATGTTCTGATAGATCCAAATCGGAACGTCAAGCTCTGAATCATCTTCTTCCTCTGGACTACGTGGTTTAAAGGAACTACATCTTCAATTATTGTCAAAGAGTAGTTCTCTTCACCTCTCTGTGAATCAAGTTTTTGAAAGCAATAGTTTTCCAAATGCAGAATGAGAATCAGGAAGGTCTGGGCACTTGTTTGACACTTCCACTGTTTCTCTATCAACATTATCTTCTGTATCAGCTTCCTTCTCCATCGCATTTTCTTCCAGTTCTGTTCCTTCTATTTTTTTTGCACCTTGAAGCTGATGGAGGAATAGAAGTGGCTTCAAGTTCCGCAGTGATTGGCTCATTTAGCTGAGAGAAGGAGTTTTCAATGAGAGGCCCACTTAAAATGAATTGTGCCAGCAGATCCGGGCCCATTTTTTCGCCCTATCTTACATATTTGGATTTCTTAGGAATCGAATTGTTGAACGGTACAAAGGTTCACGTGCTGGTACAGCAGGTTGTTTCAAAATTGCTGGATCCTACGAGGAATCCACGTGTGCAGAAACCTCTGTAAAGCTTAAAAGGCTCTCATCCCCTCTATGTCCAATCAATCTTTGGACCTGGTTGTTAGGGACAACTGGAATTCTCTCATCGGTAACCACCCTCGCAGATGTTTCCACCCAAATCTTAACTTTGAAAGTCAAACCCTCATGAACCAGCTGTGCTGAATAAGGGACAAAATAGCCATCACCTCTCACCTTTAACCTCGCCCATTCAAGTGATTACAAAGCTCCGTCTCTTCTTCAGTTTGAATCCAACCTCCACAGAAATTCCCGATCTCCCGGAAGACTTTCTTGGACCAAAGTTGGAGGGGTAAACCCACTATCCTGATCCAAATCTGATCCGGCTTTTCATGGATGGAGTTCGAAGTCGGCGACCACCTTGAAGATTGAACTTGTGTGTTTTCCAGAACCATTTTCCTCTTACTATGTGTTCTGCAACAGTTTTATTGGGGAGTTCAAATAAAAATCAATTATTCCCCAAGTCATAGATATTGATGCCATGATGATGTCTCCAGGTACTCCCAACCCATCTATGAATCTCCGACAAAATGATATCTGGGATCTCCTCCGGCAGAGTTACACTCTTAGCTAGTATGTCATACTGGGTTTTTGGTATGGCATCTGTAATAACCAGCAAATTTCCTTTTTGTTGTATCTTGGCATCAGTAAAGTCTCTTGTAGTCCATTTATTACTTCTGACAGTATCGAATATGATAGGCCCTCTGTTTCCCTGTGTGTTGTATTAACTGTTCTCTGAACCTTAACATTGATAAAAATTGATAATTTGCAATTCCATCCATCCGGAATTTTGAGACCACTCCGGGATGATGATCACTGCTCTTCTCCTACCCTGCATGTTAATGATGCTGATGTATCGACCATATTTGTTGAAATTTCTTGAGCAAAAGAATTCTGAAAAAAGATCCTTTAACTTCCAGCTGCGAACTGAGTTCCCTTGTCCTTGTGAAGCTTCTTTAAGAGCGTAAATCAACCATTCCATGTCTTCTGGTTAAAGCTCATCCTTGTTATCTCGTTACGGCCTCTTTCTATCCAGTCATACCATGTATCTGTTGTAGGCCTACCGCGAAAAAAATGGTGTCCACTCCCATGAGAGAGTGCCGGTGACCTGTGAAGCGATTGGCGTCCCACGCGATAGGCGTGTGAGGCGCGTGGCGTCGGTGTCTGATGGAGAAAGGAGGCGCGTGGGAGCGCATGAGGTGTTTTTTGAGGATGGGTATTTTTGGGGTAGGGTCGGAATAGGGTGAAGGAGGTTGTGATGGAGGCAATTGGAAGAAGGAGAAAGAGAGATGGAATTCCGGTGGTCAGAAGGACCACCGGATAGGTTTTCTGGGTAGTGAGAGGATTTTAAAAGTTACATCGGGATTAGTGCCTGGGAGAATTAAAAAAGTAGAACATCCTGCTATATTGTGCACATTTTGTGGTTAACTTAAAAGATCTTTCAAGCTTTCTGCTGAATGTGCTTAAGGTGGAGTAGGGAAGATAATGATAAATATATTGTGAGAAATTGTATTGAAGGCTCAATGCTCTTCACTGGCTTATACCTTCTGGCCTTGTCACATCTTCCCTTCCTCAGAATGTTTTTTATTTCCTTTTCCATCTTTATGCTCAAGTCATTGTGTACTAACACTATGGTATTTGATCTTTTTTTCAAAAGAACCTATGGACACACAAATAAGTTTGACTTGATCATTTATTCATCTACATGATATAAGGTGGTTACATGACTATATGATATTTTCCCCGAGACAAAAGAAAAAGACTTCCTCTGGCATGCTGTTTGTTTTTTGTTTTCTTGTAAGTAAGCCATTTTCTTTGATTACGTGATAGGTTATTGATCTAAGTACGTTTTTTTCAGAACATTAATAAATTGAATAATCTTCTTTGGTTTAGGATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAA</genome_strand>
        <mrna_strand>ACTGCTCTTGCCATTGCCCATCAGCTTTTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAA.................................................................AATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336264" ref_strand="+" ref_description="SGN-E336264 [cTOE-10-J12]">
      <seq>agcactctgacaaaagaaagagaacagctatggcgccagttatgcagagctctcagccatgggtcgagaaatatcgaccgaagcaagtgaaggatgtagctcaccaggatgaagtcgttcgagtcctcaccaacactctcgagacttctaactgcccgcatatgttgttttatggtcctcctggaactggaaagacaaccactgctcttgccattgcccatcagcttttcggacctgagctgtataaatcgagggtattggagctaaatgctagtgatgaccgtggtatcaatgtagttcgtacaaaaattaagaactttgctgctgttgctgtaggttctaatcggcaaagtggttatccttgcccaccttttaagatcataatccttgatgaagcagattcaatgactcaagatgctcaaaatgccttgcgacgaactatggagacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="97309" stop="94304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97009" g_stop="96937" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96936" i_stop="96862" i_length="75">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96861" g_stop="96783" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="152" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96782" i_stop="96621" i_length="162">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96620" g_stop="96541" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="232" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96540" i_stop="95595" i_length="946">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95594" g_stop="95475" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="352" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95474" i_stop="94768" i_length="707">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94767" g_stop="94698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="422" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94697" i_stop="94633" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94632" g_stop="94604" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="451" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E336264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97009" e_stop="96937"/>
          <exon e_start="96861" e_stop="96783"/>
          <exon e_start="96620" e_stop="96541"/>
          <exon e_start="95594" e_stop="95475"/>
          <exon e_start="94767" e_stop="94698"/>
          <exon e_start="94632" e_stop="94604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATAGTAACCTTCCAATTAACTTAGCTCCTCTTTTCTAGCTCTCAGCCATGGAAATGTAACTTTTGGAAATTTTTGCAGTCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAACGTAAACCATCACTTTCATTTGATTGATTTACTGCTAAGCACATTAAACACTTACTGCCTAGGGTTTTCTTTAATTTCCTGTTGAGAATACAGAATTCAGCATTCTTTACGTGAAGAAACAAACATCAGTACTAAGTTATTATCATTTTTTTATTTGTTATAGTGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGGGTATGTTTTTAAGTTGTGTGTGGATTTTACTTGGGGTTCTCCCTAGTTGATGTTAACTTTTTTTGAACTGGTAACATTCCTAGTGGATGTCAATTTCATTTAGAAATTGGTAGTTTTGGGGGAGTTGATTATGTATAAGTTTCTATTGATGTGATTCCTGAAAATCAATATCTATTTTAGTAAAAATAGAAGTGTTTTTATATGTTAATTTCATGGGAATTTGTAGTTCGGTGGAATTGATTATGAATAAGTCTGTATAAATATGATTCCTGAAAATCCCTTTCTGCCTTTCAGTTGCCTAATGACCTATAATGCTAGTCGCTATCCAATTGGGGCTAGGAGTTTCTATCTTACACTGTTTCTAGTTTAGCAAAGAAAAGTAATTTCGTTCTTCTGCGAAAAGTTGATTCGAAATTCAAGTGTGAAGAGGAATAAGACTTGAACTTTTGAAAAAAGTTTACTACTTCTGGAGCAATTTAAATCCTCCTTTTGTTTTAAAAGAATGATATTGAGTAATAACGGAACTTTGGGACATCTGTTTTCTTTACATTCTTTTTATTCTTGAAATTGAGAGGACTTATAGTCTTAAACAGCAAGCTGCAGCTCTGCCTTGCTTCAAATTTTGGTGTCTTGACCTAGGACTTATGGCGATTCTTCTGGATGCTGCTAGTTTGGTGTCTTGACCTAGTCATGTTTCTACATACACGTTCTCTGTATGATTCATAGACAGACAACTAAGATCGTGTTGTTAAATGCATTTGGATAAGAAAATGTATTTACTTCCTTGATTCTATGTTCATATGTTGTTTAGGATTCTCTCTGACAAAAGAGAAATCATATCATCAAACTTGGGCCTTGTTAGTTTCTGCTGTTTGATTGTTACCTTTTGCCTACCTTACTTTCTGTATGTATATATTTCATCTTCCAATGATTTCTTCTTTAACAGACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAGGTATACTTTTGTCTTGTCTAGCTCAGTTCTTAACTAAGTTGCTCGACTCAGGTGCGGGTATTCGAGAAGGATGCGAATCCGAGTATGAATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAAAATAGTTATGAAGATATTAAAAAAAAATTCAGTTGGAAATATCGTGTATATATATATATATAGTACACTTATTTTAAGAAAAAAATAAACCCTTTTTCTGCTGGTTGATGTCCTTTTCAAGAAAAATTAAAAAGAACATGTACTTTTTCAAGAAAGATAAAAAAAGGGCTCTGTATTTCCTTTACTTGTTTCAAGAAAAAAACTCTCCGTTCTTCTCTTCTCTGTAAACTCTTCCTTCTCTTCTTTGTAGTTTTTCAACTTTCTCCTCTTTACGTCGCCGTCGCTGGAACTGTTTTTCTCTTCTTCTTTTCTCTGTACTTTTTCAAGCTTTGTCCTCTTTACGTCACCGCGTCACCGGAAATTGATTTTTTCTTCCCTAATCTTTTCTCAACTTCGGTCAAAGTGTTCGGATTGGATTGAATGAATTCGACACGCATCCCGCACCCGCACCAGAGTCGCGTCTAGACGGGTTCGCCTGCATATATGAAGAGTCCGCACAACATATGTTCTTAATGCATTTTAAGCCTCTCTTTTACTATAATGTTTAACAACATATCTTCCTTACTCATTTCAGTGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAAGTGAGTTGCCTTTCTCGTTTTTACTAATAAACTACATAAATTTGATCTAACACCTGGATTTGCAGAATGCCTTGCGACGAACTATGGAGACATA</genome_strand>
        <mrna_strand>AGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATA...........................................................................TCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAAC..................................................................................................................................................................TGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAA.................................................................AATGCCTTGCGACGAACTATGGAGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444747" ref_strand="+" ref_description="SGN-E444747 [cSTA-44-A21]">
      <seq>attttcccgtttcttcttcttcctctccaagcgggaaacagcactctgagaaaacaaagagaacagctatggcgccagttatgcaaagctctcagccatgggtcgagaaatatcgaccgaagaaagtgaaggatgtagctcaccaggatgaggtcgttcgagtcctcaccaacactctcgagacctctaactgcccgcatatgctgttttatggtcctcctggaactggaaagacgaccactgctcttgccattgcccatcagctttttggacctgagctgtataagtcgagggtattggagctaaatgctagtgatgaccgtggtatcaatgtagttcgcacaaaaattaagaactttgctgctgttgctgtaggttctaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="97353" stop="95182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97053" g_stop="96937" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96936" i_stop="96862" i_length="75">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96861" g_stop="96783" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="191" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96782" i_stop="96621" i_length="162">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96620" g_stop="96541" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="271" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96540" i_stop="95595" i_length="946">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95594" g_stop="95482" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="384" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E444747" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97053" e_stop="96937"/>
          <exon e_start="96861" e_stop="96783"/>
          <exon e_start="96620" e_stop="96541"/>
          <exon e_start="95594" e_stop="95482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCCCGTTTCTTCTTCTTCTTCTTCAAGCGGGAAACAGTACAGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATAGTAACCTTCCAATTAACTTAGCTCCTCTTTTCTAGCTCTCAGCCATGGAAATGTAACTTTTGGAAATTTTTGCAGTCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAACGTAAACCATCACTTTCATTTGATTGATTTACTGCTAAGCACATTAAACACTTACTGCCTAGGGTTTTCTTTAATTTCCTGTTGAGAATACAGAATTCAGCATTCTTTACGTGAAGAAACAAACATCAGTACTAAGTTATTATCATTTTTTTATTTGTTATAGTGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGGGTATGTTTTTAAGTTGTGTGTGGATTTTACTTGGGGTTCTCCCTAGTTGATGTTAACTTTTTTTGAACTGGTAACATTCCTAGTGGATGTCAATTTCATTTAGAAATTGGTAGTTTTGGGGGAGTTGATTATGTATAAGTTTCTATTGATGTGATTCCTGAAAATCAATATCTATTTTAGTAAAAATAGAAGTGTTTTTATATGTTAATTTCATGGGAATTTGTAGTTCGGTGGAATTGATTATGAATAAGTCTGTATAAATATGATTCCTGAAAATCCCTTTCTGCCTTTCAGTTGCCTAATGACCTATAATGCTAGTCGCTATCCAATTGGGGCTAGGAGTTTCTATCTTACACTGTTTCTAGTTTAGCAAAGAAAAGTAATTTCGTTCTTCTGCGAAAAGTTGATTCGAAATTCAAGTGTGAAGAGGAATAAGACTTGAACTTTTGAAAAAAGTTTACTACTTCTGGAGCAATTTAAATCCTCCTTTTGTTTTAAAAGAATGATATTGAGTAATAACGGAACTTTGGGACATCTGTTTTCTTTACATTCTTTTTATTCTTGAAATTGAGAGGACTTATAGTCTTAAACAGCAAGCTGCAGCTCTGCCTTGCTTCAAATTTTGGTGTCTTGACCTAGGACTTATGGCGATTCTTCTGGATGCTGCTAGTTTGGTGTCTTGACCTAGTCATGTTTCTACATACACGTTCTCTGTATGATTCATAGACAGACAACTAAGATCGTGTTGTTAAATGCATTTGGATAAGAAAATGTATTTACTTCCTTGATTCTATGTTCATATGTTGTTTAGGATTCTCTCTGACAAAAGAGAAATCATATCATCAAACTTGGGCCTTGTTAGTTTCTGCTGTTTGATTGTTACCTTTTGCCTACCTTACTTTCTGTATGTATATATTTCATCTTCCAATGATTTCTTCTTTAACAGACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATC</genome_strand>
        <mrna_strand>ATTTTCCCGTTTCTTCTTCTTCCTCTCCAAGCGGG--A-A--ACAGCACTCTGAGAAAACAAAGAGAACAGCTATGGCGCCAGTTATGCAAAGCTCTCAGCCATGGGTCGAGAAATA...........................................................................TCGACCGAAGAAAGTGAAGGATGTAGCTCACCAGGATGAGGTCGTTCGAGTCCTCACCAACACTCTCGAGACCTCTAAC..................................................................................................................................................................TGCCCGCATATGCTGTTTTATGGTCCTCCTGGAACTGGAAAGACGACCACTGCTCTTGCCATTGCCCATCAGCTTTTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGAGCTGTATAAGTCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGCACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445817" ref_strand="+" ref_description="SGN-E445817 [cSTA-18-P1]">
      <seq>attttcccgtttcttcttcttcctctccaagcgggaaacagcactctgagaaaacaaagagaacagctatggcgccagttatgcaaagctctcagccatgggtcgagaaatatcgaccgaagaaagtgaaggatgtagctcaccaggatgaggtcgttcgagtcctcaccaacactctcgagacctctaactgcccgcatatgctgttttatggtcctcctggaactggaaagacgaccactgctcttgccattgcccatcagctttttggacctgagctgtataagtcgagggtattggagctaaatgctagtgatgaccagggtatcaatgtagttcgcacaaaaattaagaactttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="97353" stop="95203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97053" g_stop="96937" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96936" i_stop="96862" i_length="75">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96861" g_stop="96783" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="191" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96782" i_stop="96621" i_length="162">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96620" g_stop="96541" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="271" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96540" i_stop="95595" i_length="946">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95594" g_stop="95503" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="363" r_length="92" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E445817" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97053" e_stop="96937"/>
          <exon e_start="96861" e_stop="96783"/>
          <exon e_start="96620" e_stop="96541"/>
          <exon e_start="95594" e_stop="95503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCCCGTTTCTTCTTCTTCTTCTTCAAGCGGGAAACAGTACAGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATAGTAACCTTCCAATTAACTTAGCTCCTCTTTTCTAGCTCTCAGCCATGGAAATGTAACTTTTGGAAATTTTTGCAGTCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAACGTAAACCATCACTTTCATTTGATTGATTTACTGCTAAGCACATTAAACACTTACTGCCTAGGGTTTTCTTTAATTTCCTGTTGAGAATACAGAATTCAGCATTCTTTACGTGAAGAAACAAACATCAGTACTAAGTTATTATCATTTTTTTATTTGTTATAGTGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGGGTATGTTTTTAAGTTGTGTGTGGATTTTACTTGGGGTTCTCCCTAGTTGATGTTAACTTTTTTTGAACTGGTAACATTCCTAGTGGATGTCAATTTCATTTAGAAATTGGTAGTTTTGGGGGAGTTGATTATGTATAAGTTTCTATTGATGTGATTCCTGAAAATCAATATCTATTTTAGTAAAAATAGAAGTGTTTTTATATGTTAATTTCATGGGAATTTGTAGTTCGGTGGAATTGATTATGAATAAGTCTGTATAAATATGATTCCTGAAAATCCCTTTCTGCCTTTCAGTTGCCTAATGACCTATAATGCTAGTCGCTATCCAATTGGGGCTAGGAGTTTCTATCTTACACTGTTTCTAGTTTAGCAAAGAAAAGTAATTTCGTTCTTCTGCGAAAAGTTGATTCGAAATTCAAGTGTGAAGAGGAATAAGACTTGAACTTTTGAAAAAAGTTTACTACTTCTGGAGCAATTTAAATCCTCCTTTTGTTTTAAAAGAATGATATTGAGTAATAACGGAACTTTGGGACATCTGTTTTCTTTACATTCTTTTTATTCTTGAAATTGAGAGGACTTATAGTCTTAAACAGCAAGCTGCAGCTCTGCCTTGCTTCAAATTTTGGTGTCTTGACCTAGGACTTATGGCGATTCTTCTGGATGCTGCTAGTTTGGTGTCTTGACCTAGTCATGTTTCTACATACACGTTCTCTGTATGATTCATAGACAGACAACTAAGATCGTGTTGTTAAATGCATTTGGATAAGAAAATGTATTTACTTCCTTGATTCTATGTTCATATGTTGTTTAGGATTCTCTCTGACAAAAGAGAAATCATATCATCAAACTTGGGCCTTGTTAGTTTCTGCTGTTTGATTGTTACCTTTTGCCTACCTTACTTTCTGTATGTATATATTTCATCTTCCAATGATTTCTTCTTTAACAGACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTG</genome_strand>
        <mrna_strand>ATTTTCCCGTTTCTTCTTCTTCCTCTCCAAGCGGG--A-A--ACAGCACTCTGAGAAAACAAAGAGAACAGCTATGGCGCCAGTTATGCAAAGCTCTCAGCCATGGGTCGAGAAATA...........................................................................TCGACCGAAGAAAGTGAAGGATGTAGCTCACCAGGATGAGGTCGTTCGAGTCCTCACCAACACTCTCGAGACCTCTAAC..................................................................................................................................................................TGCCCGCATATGCTGTTTTATGGTCCTCCTGGAACTGGAAAGACGACCACTGCTCTTGCCATTGCCCATCAGCTTTTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGAGCTGTATAAGTCGAGGGTATTGGAGCTAAATGCTAGTGATGACCAGGGTATCAATGTAGTTCGCACAAAAATTAAGAACTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318640" ref_strand="+" ref_description="SGN-E318640 [cTOB-9-F2]">
      <seq>aatatcgaccgaagcaagtgaaggatgtagctcaccaggatgaagtcgttcgagtcctcaccaacactctcgagacttctaactgcccgcatatgttgttatatggtcctcctggaactggaaagacaaccactgctcttgccattgcccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="97161" stop="96251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96940" g_stop="96937" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96936" i_stop="96862" i_length="75">
            <donor d_prob="0.914" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96861" g_stop="96783" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="83" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96782" i_stop="96621" i_length="162">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96620" g_stop="96551" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="153" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E318640" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96940" e_stop="96937"/>
          <exon e_start="96861" e_stop="96783"/>
          <exon e_start="96620" e_stop="96551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGTAACCTTCCAATTAACTTAGCTCCTCTTTTCTAGCTCTCAGCCATGGAAATGTAACTTTTGGAAATTTTTGCAGTCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAACGTAAACCATCACTTTCATTTGATTGATTTACTGCTAAGCACATTAAACACTTACTGCCTAGGGTTTTCTTTAATTTCCTGTTGAGAATACAGAATTCAGCATTCTTTACGTGAAGAAACAAACATCAGTACTAAGTTATTATCATTTTTTTATTTGTTATAGTGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATC</genome_strand>
        <mrna_strand>AATA...........................................................................TCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAAC..................................................................................................................................................................TGCCCGCATATGTTGTTATATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449766" ref_strand="+" ref_description="SGN-E449766 [cSTS-7-O6]">
      <seq>tggagatgcaaatgattctcacattgagcagcaatcaacaatgaaaggaaatgccgagccggtgctggttgttaacagcaaaatagccactacagctgttcacaaccaaaatacttcaagtgaagaaaatgcactctacacggttaagaatgataaaaaagttaatacgctttcaatagaactcgtagtaactggtgaaagaggaaaaccttggaaggatcttggcattttggacgataggccttcaaaacgaataaaagcaaatggttctgtgacactatcagaggacaagggtggggacaatgtacagaagtccactgtttgcacaaatgacaaataggttatgggaacaggtgctactccttctgaagaaaaaaagaaatctggagacagtaagctttctggtggactggacaagaacatgcagaacagaaaggatggtgctgccttggatatcacacctcccaagagggcaaacatacactctcttaaagctaaagacgatagagatagaagtaacatgtcaatacgtaagcctgttgacaatataggcaagttgcctaagttatctgctggaatatcccccaaggaacttgagaggatgggaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="128714" stop="127505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128414" g_stop="127805" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E449766" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128414" e_stop="127805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGATGCAAATGATTCTCAAAATGAGCAGCAATCAACAATGAAAGGAAATGATGCGCCGGTGCTGGTTGTTAACAGCAAAATAGCCACTACAATTGTTCACAACCAAAATACGTCAAGTGAAGAAAATGCACTCTACACGGTTAAGAATGATAAAAAAGTTAATACACTCTCAATAGAACTCTTAGTAGCTGGCGAAAGAGGTAAACCTTCGAAGGATCTTGGCATTTTGGACGATAGGCCTTCAAAACGAATAAAAGTAAATGGTTCTGTGACACTATCAGAGGACAAGGGTGGGGACAGTGTACAGAAGTTCACTGTTTGCACAAATGACAAAGAGGTTATGGGAACAGGTGCCACTCCTTCTGAAGAAAGAAAGAAATCTGGAGATAGTAAGCTTTCTGGTGGACTGGACAAGAACATGCAGAACAGAAACGATGGTGCTGCCTTGGATATCAGGCCTCCAAAGAAGGCAATCATAGACTCTGTTAAAGTGAAAGAGGATAGAGATAGAGGTAACATGTCAATTGGTAAGCTTGTTGACAATATAGGCAAGTTGCCTAAATTATCTGCTGGAGTATCCCCCAAGGAAGTTGAGAGGATGGGTGGC</genome_strand>
        <mrna_strand>TGGAGATGCAAATGATTCTCACATTGAGCAGCAATCAACAATGAAAGGAAATGCCGAGCCGGTGCTGGTTGTTAACAGCAAAATAGCCACTACAGCTGTTCACAACCAAAATACTTCAAGTGAAGAAAATGCACTCTACACGGTTAAGAATGATAAAAAAGTTAATACGCTTTCAATAGAACTCGTAGTAACTGGTGAAAGAGGAAAACCTTGGAAGGATCTTGGCATTTTGGACGATAGGCCTTCAAAACGAATAAAAGCAAATGGTTCTGTGACACTATCAGAGGACAAGGGTGGGGACAATGTACAGAAGTCCACTGTTTGCACAAATGACAAATAGGTTATGGGAACAGGTGCTACTCCTTCTGAAGAAAAAAAGAAATCTGGAGACAGTAAGCTTTCTGGTGGACTGGACAAGAACATGCAGAACAGAAAGGATGGTGCTGCCTTGGATATCACACCTCCCAAGAGGGCAAACATACACTCTCTTAAAGCTAAAGACGATAGAGATAGAAGTAACATGTCAATACGTAAGCCTGTTGACAATATAGGCAAGTTGCCTAAGTTATCTGCTGGAATATCCCCCAAGGAACTTGAGAGGATGGGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267530" ref_strand="+" ref_description="SGN-E267530 [cLEI-8-K15]">
      <seq>ggagatgcaaatgattctcaaaatgagcagcaatcaacaatgaaaggaaatgatgcgccggtgctggttgttaacagcaaaatagccactacaattgttcacaaccaaaatacgtcaagtgaagaaaatgcactctacacggttaagaatgataaaaaagttaatacactctcaatagaactcttagtagctggcgaaagaggtaaaccttcgaaggatcttggcattttggacgataggccttcaaaacgaataaaagtaaatggttctgtgacactatcagaggacaagggtggggacagtgtacagaagttcactgtttgcacaaatgacaaagaggttatgggaacaggtgccactccttctgaagaaagaaagaaatctggagatagtaagctttctggtggactggacaagaacatgcagaacagaaacgatggtgctgccttggatatcaggcctccaaagaaggcaatcatagactctgttaaagtgaaagaggatagagataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="128713" stop="127601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128413" g_stop="127901" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E267530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128413" e_stop="127901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGCAAATGATTCTCAAAATGAGCAGCAATCAACAATGAAAGGAAATGATGCGCCGGTGCTGGTTGTTAACAGCAAAATAGCCACTACAATTGTTCACAACCAAAATACGTCAAGTGAAGAAAATGCACTCTACACGGTTAAGAATGATAAAAAAGTTAATACACTCTCAATAGAACTCTTAGTAGCTGGCGAAAGAGGTAAACCTTCGAAGGATCTTGGCATTTTGGACGATAGGCCTTCAAAACGAATAAAAGTAAATGGTTCTGTGACACTATCAGAGGACAAGGGTGGGGACAGTGTACAGAAGTTCACTGTTTGCACAAATGACAAAGAGGTTATGGGAACAGGTGCCACTCCTTCTGAAGAAAGAAAGAAATCTGGAGATAGTAAGCTTTCTGGTGGACTGGACAAGAACATGCAGAACAGAAACGATGGTGCTGCCTTGGATATCAGGCCTCCAAAGAAGGCAATCATAGACTCTGTTAAAGTGAAAGAGGATAGAGATAGA</genome_strand>
        <mrna_strand>GGAGATGCAAATGATTCTCAAAATGAGCAGCAATCAACAATGAAAGGAAATGATGCGCCGGTGCTGGTTGTTAACAGCAAAATAGCCACTACAATTGTTCACAACCAAAATACGTCAAGTGAAGAAAATGCACTCTACACGGTTAAGAATGATAAAAAAGTTAATACACTCTCAATAGAACTCTTAGTAGCTGGCGAAAGAGGTAAACCTTCGAAGGATCTTGGCATTTTGGACGATAGGCCTTCAAAACGAATAAAAGTAAATGGTTCTGTGACACTATCAGAGGACAAGGGTGGGGACAGTGTACAGAAGTTCACTGTTTGCACAAATGACAAAGAGGTTATGGGAACAGGTGCCACTCCTTCTGAAGAAAGAAAGAAATCTGGAGATAGTAAGCTTTCTGGTGGACTGGACAAGAACATGCAGAACAGAAACGATGGTGCTGCCTTGGATATCAGGCCTCCAAAGAAGGCAATCATAGACTCTGTTAAAGTGAAAGAGGATAGAGATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414527" ref_strand="+" ref_description="SGN-E414527 [STM-19-N23]">
      <seq>catatccaaaattagaaggagtagcacctgtttctcataacctctttgtcatttgtgcaaacagtggacttctgtacattgtccccacccttgccctctgatagtgtcacagaaccatttacttttattcgttttgaaggcctatcgtccaaaatgccaagatccttcgaaggttttcctctttcaccagctactacgagttctattgaaagcgtattaacttttttatcattcttaaccgtgtagagtgcattttcttcacttgaagtattttggttgtgaacagctgtagtggctattttgctgttaacaaccagcaccggcgcggcatttcctttcattgttgattgctgctcattgtgagaatcatttgcatctccatgtaaggcatcctctctaataggtgaactttgcgcatctacatcatttcttcccactaaatgacttgatttaccagcagcttttgcaactcccaaatcatgtgagtttttctcaccagggacagaattcacttccttggcagtttcctgattaacacgtgaaacatttgtatctctcggtacggcatcctgtctaaccagagaattttgtccatctacatcactttttccaagtaaatgactcagtttggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="127745" stop="128963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128050" g_stop="128664" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="634" r_length="619" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E414527" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128050" e_stop="128664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGTGGCACCTG-TTCCCATAACCTCTTTGTCATTTGTGCAAACAGTGAACTTCTGTACACTGTCCCCACCCTTGTCCTCTGATAGTGTCACAGAACCATTTACTTTTATTCGTTTTGAAGGCCTATCGTCCAAAATGCCAAGATCCTTCGAAGGTTTACCTCTTTCGCCAGCTACTAAGAGTTCTATTGAGAGTGTATTAACTTTTTTATCATTCTTAACCGTGTAGAGTGCATTTTCTTCACTTGACGTATTTTGGTTGTGAACAATTGTAGTGGCTATTTTGCTGTTAACAACCAGCACCGGCGCATCATTTCCTTTCATTGTTGATTGCTGCTCATTTTGAGAATCATTTGCATCTCCATGTAAGGCATCCTCTCTAATCGGTGAACTTTGTGCATCTACATCATTTCTTCCCACTAAATGACTTGATTTACCAGCAACTTTTGCAACTCCCAAATCATGTGAGTTTTTCTCACCAGGGACATAATTCACTTCCTTAACAGTTTCCTGATTAACAGATGAAACATTTGTATCTCTCTGTAC-G--TCCTGTCTAACAAGAGAACTTTGTCCATCTACATCACTTTTTCCAAGTAAATGACTCACTTTGGCAT</genome_strand>
        <mrna_strand>AAGGAGTAGCACCTGTTTCTCATAACCTCTTTGTCATTTGTGCAAACAGTGGACTTCTGTACATTGTCCCCACCCTTGCCCTCTGATAGTGTCACAGAACCATTTACTTTTATTCGTTTTGAAGGCCTATCGTCCAAAATGCCAAGATCCTTCGAAGGTTTTCCTCTTTCACCAGCTACTACGAGTTCTATTGAAAGCGTATTAACTTTTTTATCATTCTTAACCGTGTAGAGTGCATTTTCTTCACTTGAAGTATTTTGGTTGTGAACAGCTGTAGTGGCTATTTTGCTGTTAACAACCAGCACCGGCGCGGCATTTCCTTTCATTGTTGATTGCTGCTCATTGTGAGAATCATTTGCATCTCCATGTAAGGCATCCTCTCTAATAGGTGAACTTTGCGCATCTACATCATTTCTTCCCACTAAATGACTTGATTTACCAGCAGCTTTTGCAACTCCCAAATCATGTGAGTTTTTCTCACCAGGGACAGAATTCACTTCCTTGGCAGTTTCCTGATTAACACGTGAAACATTTGTATCTCTCGGTACGGCATCCTGTCTAACCAGAGAATTTTGTCCATCTACATCACTTTTTCCAAGTAAATGACTCAGTTTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474018" ref_strand="+" ref_description="SGN-E474018 [cSTB-34-O24]">
      <seq>gacaagtctaggaagataaagatccactggttttttcggtcaacagagatcttgtatcacctgaaagatataaaggtagctgagaatgaagtatttcttgcctctggtgaaggcacaggtttggccaatgttaatcctttggaagctattgctggcagatgcaatgttatctgcacttcagaggacaacagaaatccgcaaccatcagatgaagaagtaaaaatggctgactatgttttctaccgtgcttttgatgttggaacttgtgcaattttggataagatgattgacaaagttggtgggctggatgtcaagtatgtttttaacaggaaagagagtgaaaaggccagtcatgtcctcaaacttgcttctgacaagaaagataacaaaactgctgtggaatatcgagctaatggggagtcctttgggctaaaaccacagaatcatcttggtgctgccaaactgagtcatttacttggaaaaagtgatgtagatggacaaaattctctggttagacaggatgccgtaccgagagatacaaatgtttcacgtgttaatcaggaaactgccaaggaagtgaattctgtccctggtgagaaaaactcacatgatttgggagttgcaaaagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="135060" stop="128189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134760" g_stop="134620" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134619" i_stop="129096" i_length="5524">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129095" g_stop="128927" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="310" r_length="169" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128926" i_stop="128800" i_length="127">
            <donor d_prob="0.818" d_score="0.96"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128799" g_stop="128489" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="633" r_length="323" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E474018" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134760" e_stop="134620"/>
          <exon e_start="129095" e_stop="128927"/>
          <exon e_start="128799" e_stop="128489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAGTCTAGGAAGGTAAAGATCCAGTGGTTTTTTCGGTCGACAGAGATCTTGTATCACCTGAAAGATGTAAAGGTAGCTGAGAATGAAGTATTTCTTGCCTCTGGTGAAGGCACAGGATTGGCCAATGTTAATCCTTTGGTGAGCGTCATAAAATTGCTTTATCTCATTGTGTTTTCTTTCTGTCTGCTTTTACCTTACATTAAAATAGAAATTAACTATGTAGAGTTACTTAAACCATATTGTTTTATGTATAGCATAAAAACTATCTTTTTAACCAACTGCTTATGGTTAGAGGAGTTCAATTTGTGTGCACATCTAATCCAATATATATCTATTTATTGTCCACCTCGTCAATGTTAGTAAAATTCACTCAGTTCTTGTGGAGACACTTCTGCTTATTTCTATTTGGTTTTGGTGGATCTTCAAAGGAAGCCGGGCTTCTTTTTGAGGTGATACAACACAAATTAACTTGAAACATATGTTATTATTGCTATCTTTGTGGTGGAAGACGAACAACCAGAAGGAAGCCTGAGATGATTTATTACTTGCTGATGATGACAAAGCAGATGAACCTGTAACAACAAGTACTTCTCTATGAAGTTTGTCTAAAATGAGAGATGGGAGAAGCTAGCAGATCGATCTGTCCTATATTCCTATTGAATGCCAATTCTGTCCCTCCTTGTTGCCGGTCTGCCTTTTTAGAAATTTATCCTTTTTATTGAGAGGCTACCTCTTTCTTAATTTTTTTTGTGTAGATCTTCTCGACCCAACAGAAGGAAGAAAAAAGGGAATGATAAGGTGGGTGGGTGTTGGTTTGAATAGGCAAGGGGCATTTAAAAGTTAAATATAGGATGAAAGGAGTAATTTTTTTATAAGCAAGTTCCTTCTTTTGCATGATTAGTGCAAAAGCATCAATGGCAGCCAAGTTGCCTCATTGTAATAGGAAATCATTGTTGAAAGTAAGGGAGTCAAAAAAATGAATGAAAGGAAAATGGAAGGGGAAACTTAGAAATAAAAGCTGGCGAGGGTTTTGATTAGGTTTGGGAACAAAGACAAGAATACAATTGATTCCTCTTTGCTATAAGATCTGGTTGGAGCTTTTCTTTTTACCCTAAGGGCGAGGTCTGATTAGGTTTGGGAACAAACTTACAAACGATAATTCAATAAATTTCTCTTTTTTGAGATCTTGCCGATTTTTTTTTGCCACAAGGGCATTGAAGGTTTTGGTAAGCACCTGTGCTTGCTAAATATACACGTAATAAGCTCCTTCAAAACGAGTGTGTACATAAATTCTGCCGACATGGACAAAATTAGGTGTTGCACGACCTCATCTCCACTCTTCAAATTCTTGTTGACTTCCATTGATTGTAGGTTCCACTTCTTTTTCTTCTTCACCATCACAAACAAAATTGTCACTTAAAGTAGAAACCTATCAAATCCAAATTCTTTTTTTTTTTGGGAATTGATACTTTTCAATTCATCTTCCTCTTTCTCCACCATTGCAAGCCTATAATTTCACATAAACCTATTCAAACCCCGCTGCTCATTTTTCCCCACCATTACACCCAAAAGATTGAGCCAACTAGCAAATCCAGTCTCTTTGTGATTAAAGCCAACTTGTCTCAAATTTCAAATGACCCATTTTCTGCTTGTTTCTTTCTCTTGTTGTGCGCTCTCACATCTCTTGAGACAATGAATGCCTATCCCAATGCTAGAAGATAAGTAAAAGATTTTCAAGGGCAACAGTGGCAGGAGATAAATGAAATGGACTAGGATTAAAAGAATGGGTTCTCAATTTTAGGTTCAAAAATGGTTTTACCATGATTGGTGATCAGAGCCAACATTGATGAGCGATGAGGTCGATTTCTCTGTTGGGATTGTTTCAAAACATTAAAGGTCATTTGGATAATTATTCAAGTGCATCTCTACCTTTCTGCAAGTTCCAATTTACAAGACTTAGAAAACAAAACAATAGCCAACAAAACTAATTCTCCATTGAAGTTTGTTTTAATGAGCATTAACCAAACAAAGAGTCTAACTAATAACTTCCTTACCGATGTAACTTCTATGAGACCACAATGTGAATGCATGTTTATTGTGTAAGTGCTAGGGAGAAAAACTTCCAAGTTGAGTTAGTTCTTTTTTCTATTAAATCCTTTTAATATGTATTCTTTATTGTTATTCGTGTTAATTTTGTTAGCCCATGGTACAAAGACTACACCTCCCTCTTGCTATTATAAAAGTTAACAAGAGAGTCGAGATTATACTATCACCAGTAGATAATTCTTGTGAAGTCACATAAATGCTTTTCATTTTCTTTTGGACATCATAATTTGACCAAGGGTAGTGGTGATAGGGCTTTTATTTTCGATTATTGAATGAGAAATCTACAACTCATTAGTGGAGTTGGAATGTATTAGATGACATGAACACGACAATTTGTAAACTTTCATGCTTTTAATATGCCTGATGTGCATGTGATTTTGCCATATCAACAATCTGAAAAGGAAAATATGCATGGTAAATGGCTAGAGGTATTATATGTGTAGTTTTGCATCTTTTGAACATCTTTTTAGTATATTTCACTTCATTAAAAAGTACTTATTATGTGTGGTTTTAACAAGTACAGATGTTAAACTGAACTTGCTATTGAAAGGGTGTTAACCTGGAACCTATTATTAAAAGAAGCATTAAACTAGGACGTAGAGAAGTGAAATCAGGAGTACACTTGCATATAAGGTTACAGTACAACCCATACCCATGCATTGTTTTGTGATATAATACAAAGTTACTAAGTTAAAAAAACAAAAAAGTGTTAAAACCAGAATAGGTCTTAAGTTAGGGGTTTGCTATTTTACGTGCAAGTTGGACTGTTAATTTGTGTAGAGTCTTTTTTATTCATTGGCGTTGTTGTCACCCCCAAGACATTTTTTTGAACTTCCTTTGTGACTTATTAATTGACCAACAAGATTTGAAGAAATGTAACTTTTCATATCTGACATGACTTTATTTAGTTAGAATTATGTCTTTTCGAGGTAGATTAACAACACACTCAGTGAAATTCCTCAAGCGGGGTTGGTGTTGAGAGGTGGAGTAATTAAGAAAGTTGGGTTCAACTTTATGAATGTGTCACTTCATTTAAGCTCACCCTAATCTTATATTATATGAAATAAAATAAAAAACAGTTAAGTTCTTTGTATTTTCTACTAGTAATGGAATATAAACTTCTAACATAAGTAGAACACCTTGGGCATCGTGGACACAGACATAATCAGAAAATCAGGCAAGGGAAGGGAACGATAGTGGTCTTTTGAAATGCCCACATAGGCGAGCAAAATCAATCTTGTACCCAACCATCAAACATGTCACCATCACCGCCCATTCTAAAGTCAAGTGGTTATCTGCCATGGCGGTGATAGTCAAGCACGTACAATAGACCACCAAAACATGGTCGGAAAATTCAATAAGGCCTTCTTGATCAGGGCTATATCGGGTACCCAATCGACATCAACACCTTGCTCGGTGATGTATCTTGGCACCCATTTGCGCAAATTTTCCTTTGAGACACATCCTTCATTGCATTTTTATTTTGGAATATCTGCATTAAATAATAAAACTCAGCAGTAAAGGCAATCTGTAGTAGGTTGGTATGTGGATGAACCCGTCGGTTGATACGCCTAAATTACACCTCCTAAAAGAAGAATAAGCGATTGTTCAAATGAATACCCTAACATAGGTTAGGGTTGATCTCACGAGGAATGAAGTCTAGACTAACCTAATTGATTATTAGATTATACATTTAGTCGAGTTATTTCCGTAACGGGGGGGGGGGTTGTAAAACAAAAGCTTGAGTTAATGATTGTAGTAACAAGGAAGCAGGAGATTGATTGGTTGTAAAATCAATAGAAGATAGGACATTTATGTTCTCCACAAGTTCATAACTGTAAGCCTTACAGTAGTAACCTTGTTTAGTGTCTAGCATGCAAAGTTAGTAAGTTAGGTATCTCTTAAGTAGCTGGTCCCCCAAATAATTGAATTTCACCACGCAACTTTGGTCAGTCTACGGGTGTATTCTTTAATAACCGTTACCCTTGAGCCTAGATTAGCTATCCATGGCCCGTTCAAGCTACTAGATGAGGCTTGGTAACATCAAATTTTATTGTATAATCTCTTTTTCATTCGTTACCCCTTTGGTCAGGTAAGTATCAATAATGCGAGTTCTGACGTAGGTCTTTGTTAAAAGGCAATCAAACTGAAGAGAGAAACAGTACATGCATAAACATTATCTAAGAATTACTTACTAGTCATTAGGTTTGCATTGTTAATTCCTCATGGTTCCCGCAACTCTAGTTGTGGATTTAGCTACTCATGCTTGGGTGATCACAATTCATATTAATTTTTTAAAGATAAATCATGCACTTACAATTAGAGTAGTTAAATTTCGGAATCTTGATTCATGAACAAAAGATGTAATAATAACCACCTATTCTAGAATTAAAATGCAGACGTATTCCACAATTTAATTCTCAAAACAAAGTATGATTTGTCTATCTTCAAAAAATAAATAAAAAATGACTATTTATAGACGTCTTATATCCTAAATAAAGTAGACTAAGAAAACATAGGAAAAAGTAGGATTCGGCAGTCGCTTCTACGGCTCGTACGAACCTTTCGTGGAACACAACTTCTTCAATATTCCTCTTGACTTACCTACGGACATATTTTACGACTCGTCGAACTTTGCACAACCCGTTCTGGCTGCTCGCTGTCCAAGTACTGAACTCCAACATCTTTGGTCTTTTCTACGCCTTGGACCTACGGCTCGTAGAAATTCCTATGGCTCGTAGTCCAGTCTCGTGGTCCCATATTTAGCTCCAAAAATCACCGGTCTCTTCTACGGCTCATACCTACGGCTCGTAGGTCAATTGACTCAATTCATCAAACCTCAAAATCTGTTGTTTCATTGTACTCTTCACCCCGACTTGCCAAAATCTATTTTCCTGCAAAACAAAGATAAAATACCATCAAATCTACTATCAAGTGCTTAAAAGACAGAGAAAACCTCAATTTTAAAGCATTTTAAGTACTGTAAATATGCAGTACATCAGAGACACATGTCACTCCCTAGACTCATGTAACTTTGCATACAACTACTTTGTGTGGTAATACTTTTTTCCTCAGTTTTAAATAAAATATGTGCTTTCATCAAAAGATAAGCTCTCATTGATTAAAAAAAGGTTGCAATCAGAGTGACATCTATGATTTTCATGACGATGTTCAGCCTGTTTGCGCACACCTCGAATTTACACTAGGTGCTTGCTTTTTTCCATTAGCATAGGTACTAGATAATTTATCTACCAAGGTGGGATGAAATCACCGACTGTTTTTTGCTTCCATGAGATATAAACATGATGGTTATTCACCTACTTCATTAATTACTTAGCCATTCCATTGGATGCAGAATTGTGGCCTATTTTTCTTCCCTAGTGGTATGTGAATTACGAAAGATATTTGTTCTGTTTGGTTGTCTTGTTAAGTGTTCTCTGTTTCTACTATGAGTCTGTCCCGAGTTTGCATATAGCCATTGTCAATATCACACGCTTAACTTGTAATTTATCATATGCCTTTGGCTGCTTAACTTCTTGTCGATTTACTTGACCAGGAAGCTATTGCTGGCAGATGTAATGTTATCTGCACTTCAGAGGACATCAGAAATCCGCAGCCATCAGATGAAGAAGTTAAATTGGCTGACTATGTTTTCTACCGTGCTTTTGATGTTGGAACTTGTGCAATTTTGGATAAGATGATCGACAAAGTTGGTGGGCTGGACGGTATGTGCCTCAGCTCCCTGGGTGTCCTCTCTTTGTGGTGTCACTACAGTATAAATTCATTTTAATGGAATAATATAAAGCAGCTTAGATTAATCTCTCATGCAAATTTGTTTATGTTTTGGTACAGTCAAGTATGTTTTTAACAGGAAAGATAGTGAAAAGGCCAGTCATGTCCTCAAATTTGCTTCTGACAAGAAAGATAACAAAACTGCCATGGAATATCGAGCTAATGGGGAGTCCTCTGGGCTAAAACCACAGAATCA---------TGCCAAAGTGAGTCATTTACTTGGAAAAAGTGATGTAGATGGACAAAGTTCTCTTGTTAGACAGGA---CGTACAGAGAGATACAAATGTTTCATCTGTTAATCAGGAAACTGTTAAGGAAGTGAATTATGTCCCTGGTGAGAAAAACTCACATGATTTGGGAGTTGCAAAAGTTGCT</genome_strand>
        <mrna_strand>GACAAGTCTAGGAAGATAAAGATCCACTGGTTTTTTCGGTCAACAGAGATCTTGTATCACCTGAAAGATATAAAGGTAGCTGAGAATGAAGTATTTCTTGCCTCTGGTGAAGGCACAGGTTTGGCCAATGTTAATCCTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTATTGCTGGCAGATGCAATGTTATCTGCACTTCAGAGGACAACAGAAATCCGCAACCATCAGATGAAGAAGTAAAAATGGCTGACTATGTTTTCTACCGTGCTTTTGATGTTGGAACTTGTGCAATTTTGGATAAGATGATTGACAAAGTTGGTGGGCTGGATG...............................................................................................................................TCAAGTATGTTTTTAACAGGAAAGAGAGTGAAAAGGCCAGTCATGTCCTCAAACTTGCTTCTGACAAGAAAGATAACAAAACTGCTGTGGAATATCGAGCTAATGGGGAGTCCTTTGGGCTAAAACCACAGAATCATCTTGGTGCTGCCAAACTGAGTCATTTACTTGGAAAAAGTGATGTAGATGGACAAAATTCTCTGGTTAGACAGGATGCCGTACCGAGAGATACAAATGTTTCACGTGTTAATCAGGAAACTGCCAAGGAAGTGAATTCTGTCCCTGGTGAGAAAAACTCACATGATTTGGGAGTTGCAAAAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273237" ref_strand="+" ref_description="SGN-E273237 [cLEM-24-M13]">
      <seq>tgaatcttgacctcgcgatatattttatttacttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggataccatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctacctgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtcccttattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="139527" stop="142683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139827" g_stop="139962" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139963" i_stop="140040" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140041" g_stop="140069" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="164" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140070" i_stop="140183" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140184" g_stop="140267" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="249" r_length="85" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140268" i_stop="140365" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140366" g_stop="140419" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="303" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140743" g_stop="140820" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="382" r_length="79" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="436" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="496" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="142339" g_stop="142383" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="541" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E273237" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139827" e_stop="139962"/>
          <exon e_start="140041" e_stop="140069"/>
          <exon e_start="140184" e_stop="140267"/>
          <exon e_start="140366" e_stop="140419"/>
          <exon e_start="140743" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTTGACCTCGCGATATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATA-CATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTAC-TGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTG</genome_strand>
        <mrna_strand>TGAATCTTGACCTCGCGATATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACCATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACCTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317537" ref_strand="+" ref_description="SGN-E317537 [cTOB-17-E7]">
      <seq>tatattttatttacttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcagcctgttggaaggtagtcaaacctcttctacaggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="139545" stop="143604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139845" g_stop="139962" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139963" i_stop="140742" i_length="780">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140743" g_stop="140820" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="195" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="249" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140996" i_stop="142338" i_length="1343">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142339" g_stop="142434" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="345" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="143064" g_stop="143165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="447" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143279" g_stop="143304" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="473" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E317537" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139845" e_stop="139962"/>
          <exon e_start="140743" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142339" e_stop="142434"/>
          <exon e_start="143064" e_stop="143165"/>
          <exon e_start="143279" e_stop="143304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAG</genome_strand>
        <mrna_strand>TATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542066" ref_strand="+" ref_description="SGN-E542066 [TUS-63-C22]">
      <seq>attttatttacttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcagcctgttggaaggtagtcaaacctcttctacaggagagaacccgaaaaaaggttcaagttttatcaggttgtggacaggatgatctattgaagatcatggactattcgtcactgccccatttttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="139548" stop="143843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139848" g_stop="139962" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139963" i_stop="140040" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140041" g_stop="140069" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="143" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140070" i_stop="140183" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140184" g_stop="140267" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="227" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140268" i_stop="140365" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140366" g_stop="140419" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="281" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140743" g_stop="140820" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="359" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="413" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="473" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="142339" g_stop="142434" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="569" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="143064" g_stop="143165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="671" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="143279" g_stop="143359" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="752" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="143510" g_stop="143543" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="786" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E542066" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139848" e_stop="139962"/>
          <exon e_start="140041" e_stop="140069"/>
          <exon e_start="140184" e_stop="140267"/>
          <exon e_start="140366" e_stop="140419"/>
          <exon e_start="140743" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142434"/>
          <exon e_start="143064" e_stop="143165"/>
          <exon e_start="143279" e_stop="143359"/>
          <exon e_start="143510" e_stop="143543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCC</genome_strand>
        <mrna_strand>ATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220816" ref_strand="-" ref_description="SGN-E220816 [cLEL-22-O2](-)">
      <seq>tttttatttacttttctttattcgctctgtcctctctnttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttaccagataattcgtgattctcaaactaataggaatgccaggttacacgaaagagggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="139549" stop="141121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139848" g_stop="139962" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139963" i_stop="140040" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140041" g_stop="140069" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="143" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140070" i_stop="140183" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140184" g_stop="140267" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="227" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140268" i_stop="140365" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140366" g_stop="140419" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="281" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140743" g_stop="140820" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="360" r_length="79" r_score="0.936"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140942" g_stop="140946" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="365" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E220816" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220816" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="139848" e_stop="139962"/>
          <exon e_start="140041" e_stop="140069"/>
          <exon e_start="140184" e_stop="140267"/>
          <exon e_start="140366" e_stop="140419"/>
          <exon e_start="140743" e_stop="140820"/>
          <exon e_start="140942" e_stop="140946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTA-CAGATCAATTCGTGATTCTC-AACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCT</genome_strand>
        <mrna_strand>TTTTTATTTACTTTTCTTTATTCGCTCTGTCCTCTCTNTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACCAGAT-AATTCGTGATTCTCAAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221220" ref_strand="-" ref_description="SGN-E221220 [cLEL-22-O2](-)">
      <seq>tttttatttacttttctggattcgctctgtcctctctcttctctgtttctgaagaagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgtaggttgattctttgaattggagagtcaaaaatgagatagatgctattttatccaatcctatcattcctactgagctttacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="139549" stop="141073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139848" g_stop="139962" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139963" i_stop="140040" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140041" g_stop="140069" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="143" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140070" i_stop="140183" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140184" g_stop="140267" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="227" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140268" i_stop="140365" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140366" g_stop="140419" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="281" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323">
            <donor d_prob="0.517" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140743" g_stop="140773" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="312" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E221220" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221220" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="139848" e_stop="139962"/>
          <exon e_start="140041" e_stop="140069"/>
          <exon e_start="140184" e_stop="140267"/>
          <exon e_start="140366" e_stop="140419"/>
          <exon e_start="140743" e_stop="140773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGAT</genome_strand>
        <mrna_strand>TTTTTATTTACTTTTCTGGATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGAAGAAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TAGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGCTATTTTATCC...................................................................................................................................................................................................................................................................................................................................AATCCTATCATTCCTACTGAGCTTTACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298202" ref_strand="+" ref_description="SGN-E298202 [cLEW-9-M9]">
      <seq>ttttatttacttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="139549" stop="142534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139849" g_stop="139962" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139963" i_stop="140040" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140041" g_stop="140069" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="142" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140070" i_stop="140183" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140184" g_stop="140267" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="226" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140268" i_stop="140365" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140366" g_stop="140419" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="280" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140743" g_stop="140820" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="358" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="412" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="142189" g_stop="142234" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="458" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E298202" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139849" e_stop="139962"/>
          <exon e_start="140041" e_stop="140069"/>
          <exon e_start="140184" e_stop="140267"/>
          <exon e_start="140366" e_stop="140419"/>
          <exon e_start="140743" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCG</genome_strand>
        <mrna_strand>TTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272562" ref_strand="+" ref_description="SGN-E272562 [cLEM-21-K6]">
      <seq>tttacttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgattgtcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="139554" stop="142764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139854" g_stop="139962" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139963" i_stop="140040" i_length="78">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140041" g_stop="140069" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="138" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140070" i_stop="140183" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140184" g_stop="140267" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="222" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140268" i_stop="140365" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140366" g_stop="140419" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="276" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140743" g_stop="140820" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="354" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="408" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="468" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="142339" g_stop="142434" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="564" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E272562" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139854" e_stop="139962"/>
          <exon e_start="140041" e_stop="140069"/>
          <exon e_start="140184" e_stop="140267"/>
          <exon e_start="140366" e_stop="140419"/>
          <exon e_start="140743" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATT-TCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG</genome_strand>
        <mrna_strand>TTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTGTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319216" ref_strand="+" ref_description="SGN-E319216 [cTOB-16-L8]">
      <seq>tttacttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="139554" stop="142673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139854" g_stop="139962" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139963" i_stop="140040" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140041" g_stop="140069" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="137" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140070" i_stop="140183" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140184" g_stop="140267" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="221" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140268" i_stop="140365" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140366" g_stop="140419" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="275" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140743" g_stop="140820" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="353" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="407" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="467" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="142339" g_stop="142373" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="502" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E319216" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139854" e_stop="139962"/>
          <exon e_start="140041" e_stop="140069"/>
          <exon e_start="140184" e_stop="140267"/>
          <exon e_start="140366" e_stop="140419"/>
          <exon e_start="140743" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAG</genome_strand>
        <mrna_strand>TTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317572" ref_strand="+" ref_description="SGN-E317572 [cTOB-8-A11]">
      <seq>ttttcttcattcgctctgtcctctctcttctctgtttctgtagtagccatgtgtgtgatttcagaagaatccatcgctcagtttgaagctttaatggaacaagttgatgaatcactcaaaactacttttcagaatgttcatcaaggttgtacaagggatacatatctgcggttcctaatagcaagagagggaaatgttgcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="139559" stop="142533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139859" g_stop="139962" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139963" i_stop="140040" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140041" g_stop="140069" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="132" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140070" i_stop="140183" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140184" g_stop="140267" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="216" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140268" i_stop="140365" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140366" g_stop="140419" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="270" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140743" g_stop="140820" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="348" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="402" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="142189" g_stop="142233" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="447" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E317572" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139859" e_stop="139962"/>
          <exon e_start="140041" e_stop="140069"/>
          <exon e_start="140184" e_stop="140267"/>
          <exon e_start="140366" e_stop="140419"/>
          <exon e_start="140743" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGC</genome_strand>
        <mrna_strand>TTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAG-AAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAAAACTACTTTTCAG..................................................................................................................AATGTTCATCAAGGTTGTACAAGGGATACATATCTGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408455" ref_strand="+" ref_description="SGN-E408455 [PPI-11-K17]">
      <seq>gaccttgggatccatttacttacttttattcttcgtcttcttcattcattctgttctctcttctctgttctgtagccatgtgtgtgatttcagaagaagccatcgctcagtttgaagctttaatggaacaagttgatgaagcactcaaaactacttttcagaatattcatcaaggatgtacaagggacgcatatctgcggttcctaacagcaagagagggaaatgttgcaaatgcccataaaatgttggttgattctttgacttggagggtcgaaaatgagatagatgatattttagcgaaacctatcattcctactgagctttacagagcaattcgtgattctcaactaataggaatgccaggttacaccaaagagggccttccaatattcgcttttggtgcaggactcagcacatatgataaagcatctgtccattattatgtgcaatcacacattcagattaatgaatatcgcgatcgtgtggttttgcctgctgcaagtaagaagaatgggaaacatatcagcaaatctctgaaggttntagatatgaccggcttgaaactttcagctctaaacaaaataaagctattgactataattttctccatcgatgaccttaattacccggagaaggtagttgcatactacattgtgaacgctccctatatcttttcagcttgttggaaggagagaactcgaaaaaaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="139575" stop="143466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139902" g_stop="139962" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="132" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139963" i_stop="140040" i_length="78">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140041" g_stop="140069" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="161" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140070" i_stop="140183" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140184" g_stop="140267" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="245" r_length="84" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140268" i_stop="140365" i_length="98">
            <donor d_prob="0.906" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140366" g_stop="140419" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="299" r_length="54" r_score="0.926"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323">
            <donor d_prob="0.517" d_score="0.92"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140743" g_stop="140820" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="377" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="431" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="491" r_length="60" r_score="0.917"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.920" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="142339" g_stop="142434" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="587" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.810" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="143064" g_stop="143165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="689" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="143166" i_stop="143299" i_length="134">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.887" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="143300" g_stop="143320" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="710" r_length="21" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E408455" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139902" e_stop="139962"/>
          <exon e_start="140041" e_stop="140069"/>
          <exon e_start="140184" e_stop="140267"/>
          <exon e_start="140366" e_stop="140419"/>
          <exon e_start="140743" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142434"/>
          <exon e_start="143064" e_stop="143165"/>
          <exon e_start="143300" e_stop="143320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTT</genome_strand>
        <mrna_strand>TAGCCATGTGTGTGATTTCAG-AAGAAGCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAAGCACTCAAAACTACTTTTCAG..................................................................................................................AATATTCATCAAGGATGTACAAGGGACGCATATCTGCGGTTCCTAACAGCAAGAGAGGGAAATGTTGCAAATGCCCATAAAATG..................................................................................................TTGGTTGATTCTTTGACTTGGAGGGTCGAAAATGAGATAGATGATATTTTAGCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGAGCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACCAAAGAG.........................................................................................................................GGCCTTCCAATATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGATTAATGAATATCGCGATCGTGTGGTTTTG..........................................................................................CCTGCTGCAAGTAAGAAGAATGGGAAACATATCAGCAAATCTCTGAAGGTTNTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACAAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTTCTCCATCGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTGAACGCTCCCTATATCTTTTCAGCTTGTTGGAAG......................................................................................................................................GAGAGAACTCGAAAAAAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319315" ref_strand="+" ref_description="SGN-E319315 [cTOB-16-L12]">
      <seq>ccatgtgtgtgatttcataagaatccatccgctcactttgaagctttaatggaacaagttgatgaatcactcagaactacttttcagaatgctcatcaacgttgttcacgggatacatatctgcggctcctaatagcaagagagggaaatgtggcaaatgctcataaaatgttggttgattctttgaattggagagtcaaaaatgagatagatgatattttatcgaaacctatcattcctactgagctttacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcgggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtcattctgcctgctgcaagtgagaagtatgggaaacgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="139605" stop="142671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139905" g_stop="139962" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139963" i_stop="140040" i_length="78">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140041" g_stop="140069" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="87" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140070" i_stop="140183" i_length="114">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140184" g_stop="140267" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="171" r_length="84" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140268" i_stop="140365" i_length="98">
            <donor d_prob="0.906" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="140366" g_stop="140419" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="225" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323">
            <donor d_prob="0.517" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140743" g_stop="140820" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="303" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="357" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="417" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="142339" g_stop="142371" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="450" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E319315" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139905" e_stop="139962"/>
          <exon e_start="140041" e_stop="140069"/>
          <exon e_start="140184" e_stop="140267"/>
          <exon e_start="140366" e_stop="140419"/>
          <exon e_start="140743" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTGTGTGATTTCAGCAAGAATCCAT-CGCTCAGTTTGAAGCTTTAATGGAACAAGGTACATATAAACTTCATCATCTTTTTAATTTTGCTATGCTAATGGCTAATTGCTAATCCCGTTCATTTTTCTGACCAGTTGATGAATCACTCAAAACTACTTTTCAGGTTCTCTAACTAATTTTTTTTTAGCTCTATCAAATCTACCCATATTTTTAATTTTGGGTTTAATTAAAAATATGTTGACCCAGTTTTTTTTTTGAATTACAAATTATTGAGCAGAATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATGGTCAAAATCTATGTTTAAGATTTTTTCAACTTTTTTAGCAAGCTGATAGATACTGTATATTAAAAAGATGCTCTTTTTTTTTTTTGGGAATGTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATC</genome_strand>
        <mrna_strand>CCATGTGTGTGATTTCA-TAAGAATCCATCCGCTCACTTTGAAGCTTTAATGGAACAAG..............................................................................TTGATGAATCACTCAGAACTACTTTTCAG..................................................................................................................AATGCTCATCAACGTTGTTCACGGGATACATATCTGCGGCTCCTAATAGCAAGAGAGGGAAATGTGGCAAATGCTCATAAAATG..................................................................................................TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCGGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTCATTCTG..........................................................................................CCTGCTGCAAGTGAGAAGTATGGGAAACGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557778" ref_strand="+" ref_description="SGN-E557778 [16631]">
      <seq>gtttcagttggttgattctttgacttggagggtcgaaaatgagatagatgatattttagcgaaacctatcattcctactgagctttacagagcaattcgtgattctcaactaataggaatgccaggttacactaaagagggccttccaatattcgcttttggtgcaggactcagcacatatgataaagcatctgtccattattatgtgcaatcacacattcagattaatgaatatcgcgatcgtgtggttctgcctgctgcaagtaagaagaatgggaaacatatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctccatcgatgaccttaattacccggagaaggtagttgcatactacattgtgaacgctccctatatcttttcagcttgttggaagcgtaggtcaaacctcttctgcaggagagaactcgaaaaaaggttcaaagttctatcagggctgtgcgacaggatgatctattgaagatcatggactattcgtcactgccccattttgccggaagaaggtcctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="140059" stop="143862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140359" g_stop="140419" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323">
            <donor d_prob="0.517" d_score="0.92"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140743" g_stop="140820" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="139" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="193" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="253" r_length="60" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.920" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="142339" g_stop="142434" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="349" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143064" g_stop="143165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="452" r_length="103" r_score="0.931"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143279" g_stop="143359" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="537" r_length="85" r_score="0.852"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150">
            <donor d_prob="0.895" d_score="0.83"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="143510" g_stop="143562" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="588" r_length="51" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E557778" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140359" e_stop="140419"/>
          <exon e_start="140743" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142434"/>
          <exon e_start="143064" e_stop="143165"/>
          <exon e_start="143279" e_stop="143359"/>
          <exon e_start="143510" e_stop="143562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCGGTGAGTAGTATGGAAAATTACACTGTCGTAGCTATATATTACACATTGACACTCCTCGACTTTTATACGAGTTAACTTCTTTGACATTCTGACTCCGATCTCACCCTCGGCTTAAGTAATTAATTGTATTTTATCATAATGTAAGCTTACATTAACCCTCCCTATGTTGAGGAGGTTGAGAGATTGTTTCTGGTGGACACTAGGCTCATGTTATTAATTATATTTTATCTTAGTATATTCTTACTATGGTTGAAAATTGTATGTATCTAATTGGCTACTTTGCAAATTACTATATGTTGATTCGTTTGTAATTGTTGTCTCAGAAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG-GTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTA-GTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTC-AAGTTTTATCA-GGTTGTG-GACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATC</genome_strand>
        <mrna_strand>GTTTCAGTTGGTTGATTCTTTGACTTGGAGGGTCGAAAATGAGATAGATGATATTTTAGCG...................................................................................................................................................................................................................................................................................................................................AAACCTATCATTCCTACTGAGCTTTACAGAGCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACTAAAGAG.........................................................................................................................GGCCTTCCAATATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGATTAATGAATATCGCGATCGTGTGGTTCTG..........................................................................................CCTGCTGCAAGTAAGAAGAATGGGAAACATATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCCATCGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTGAACGCTCCCTATATCTTTTCAGCTTGTTGGAAGC.................................................................................................................GTAGGTCAAACCTCTTCTGCAGGAGAGAACTCGAAAAAAGGTTCAAAGTTCTATCAGGGCTGTGCGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCA-TTTTGCCGGA-AGAAGGTCCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336659" ref_strand="+" ref_description="SGN-E336659 [cTOE-4-D12]">
      <seq>tacagatcaattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcagcctgttggaaggtagtcaaacctcttctacaggagagaacccgaaaaaaggttcaagttttatcaggttgtggacaggatgatctattgaagatcatggactattcgtcactgccccatttttgccggagagaaggttctggatcttccaaatactcaggcagctcaagtgaaaattgttattccctggatcatccattccaccagcaactttatgattacataaagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="140467" stop="143948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140767" g_stop="140820" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="108" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="168" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142339" g_stop="142434" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="264" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="143064" g_stop="143165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="366" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143279" g_stop="143359" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="447" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143510" g_stop="143648" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="586" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E336659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140767" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142434"/>
          <exon e_start="143064" e_stop="143165"/>
          <exon e_start="143279" e_stop="143359"/>
          <exon e_start="143510" e_stop="143648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGC</genome_strand>
        <mrna_strand>TACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255251" ref_strand="+" ref_description="SGN-E255251 [cLEG-31-F10]">
      <seq>caattcgtgattctcaactaataggaatgctaggttacacgaaagagggcctgccagtatgcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtattgggggggcaaacgtatcancaaatctctgaaggttttaaatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcaacctgttggaaggtagtcaaacctcttctacaggagagaacccgaaaaaaggttcaagttttatcaggttgtggacaggatgatctattgaagatcatggactattcgtcactgccccattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="140474" stop="143840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140774" g_stop="140820" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="101" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="161" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142339" g_stop="142434" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="263" r_length="102" r_score="0.854"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="143064" g_stop="143165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="365" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143279" g_stop="143359" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="446" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143510" g_stop="143540" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="477" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E255251" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140774" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142434"/>
          <exon e_start="143064" e_stop="143165"/>
          <exon e_start="143279" e_stop="143359"/>
          <exon e_start="143510" e_stop="143540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTA-T----GGG-AAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTT</genome_strand>
        <mrna_strand>CAATTCGTGATTCTCAACTAATAGGAATGCTAGGTTACACGAAAGAG.........................................................................................................................GGCCTGCCAGTATGCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATTGGGGGGGCAAACGTATCANCAAATCTCTGAAGGTTTTAAATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAACCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264054" ref_strand="+" ref_description="SGN-E264054 [cLEG-64-A19]">
      <seq>caattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="140474" stop="142683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140774" g_stop="140820" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="101" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="161" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142339" g_stop="142383" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="206" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E264054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140774" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTG</genome_strand>
        <mrna_strand>CAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264107" ref_strand="+" ref_description="SGN-E264107 [cLEG-64-G22]">
      <seq>aattcgtgattctcaactaataggaatgccaggttacacgaaagagggccttccagtattcgcttttggtgcaggactcagcacatatgataaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcagcctgttggaaggtagtcaaacctcttctacaggagagaacccgaaaaaaggttcaagttttatcaggttgtggacaggatgatctattgaagatcatggactattcgtcactgccccatttttgccggagagaaggttctggatcttccaaatactcaggcagctcaagtgaaaattgttattccctggatcatccattccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="140475" stop="143921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140775" g_stop="140820" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="140942" g_stop="140995" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="100" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="160" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142339" g_stop="142434" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="256" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="143064" g_stop="143165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="358" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143279" g_stop="143359" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="439" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143510" g_stop="143621" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="551" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E264107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140775" e_stop="140820"/>
          <exon e_start="140942" e_stop="140995"/>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142434"/>
          <exon e_start="143064" e_stop="143165"/>
          <exon e_start="143279" e_stop="143359"/>
          <exon e_start="143510" e_stop="143621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAGGTATCCAATTCATGAAATAATGTCGTCACTATAACACACATCATAGCTATCTTTTTTCTATTGATGCTCATATGGACTTAATATAACTTTTTGAGAACTCTGTTGTTTCCCTCTTTTTCAGGGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCGGTAAGGGTCGTTTAAGATTCTCATCTTCCCTCAAGGCTATAATATTTCATGTGCATTTACTTACTCAAGAACTTGTTGTTAAGTAATGGATGTTTGATTTGTGGATAATGGAAGTCTACTGCTTGGATTAGTTTCAGAGACAAAAAACAAGAAAACCATCCATATCAAGACCGATCGATGCTATTTATTGTCAAGTCCAATAGCAACACTCTTTTGCAAACAGTTTGCATACATATAGATATTAAATTGCTAAACCTGATACAGTTTCATAATCGATTGGTATTTGAACATTTTTCCTTTACTTTGGTTGGGTGTCAAATGAGCGGGTTGAGTTGAAATTGGAGATATCTAAATTGGGTGTTGGGTCTTGATCCACCCCTAGTTTACTCTGGACTCAAAACGGGTTGGGTCTTAACCCACCCAATTTGACTCGCTTAATCTCAATAATTTTAATAGATTGTTATTTAAGTTTTTATTACCACAATTTGAATTTCATCTCAACAAAATTAAAAAGAAGAAATCACAAATGGATAGGTAACTCCTAAAAGATATAATAGATAGTAACTCATACCTTCAATATAAAAACATACATTACATCAATGCATATATAGAGTCTTAAAACGGATTGAAATTAAGCACGTTGAAATTGAAGATTAAATTGGGCTCAATTGATGATTCTTTTAGAATGGGTTAAGGCTTGAGTGGATTGAGATTGAACCCAATTGAAATTATGTTGAGCCCAATCCTTCAAATTCTGAGCAAGTTACCTATAATTGAGCTCATTTTTGATACCTCTAGTTCTACTTATCAGAGATTAGAGATGAAGCATAAAAGAGGGAAAGTAAAATTGTAAATAGAAGGCCAACTTACATATATTAATTGGTAGTAGTAATAGTAGATCTTTGATCTTTCAATCAGGTCCCTGGTATGTCTTTACTCTGTAGTATTTGGTGTGACTGACTGTTACATCATGGACATGCACTGGGAACTTCCGCGTAATTTGCGCACCTTGTTATACATTTTCCCTTGCCTTTGGCTATTTAGTTCTCAGCTTTTTTTCCCTTATTTGCCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACC</genome_strand>
        <mrna_strand>AATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG.........................................................................................................................GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574656" ref_strand="+" ref_description="SGN-E574656 [34159]">
      <seq>ctgtccattattatgtgcaatcacacattcagattaatgaattatcgcgatcgtgtggttctgcctgctgcaagtaagaagaatgggaaacatatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctccatcgatgaccttaattacccggagaaggtagttgcatactacattgtgaacgctccctatatcttttcagcttgttggaaggtagtcaaacctcttctgcaggagagaactcgaaaaaaggttcaagttttatcagggtgtggacaggatgatctattgaagatcatggactattcgtcactgccccatttttgccggagagaaggttctggatcttccagatactcaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="141889" stop="143879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142065" g_stop="142066" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142067" i_stop="142188" i_length="122">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="63" r_length="61" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="0.88"/>
            <acceptor a_prob="0.920" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="142339" g_stop="142434" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="159" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143064" g_stop="143165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="261" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="143279" g_stop="143359" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="342" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150">
            <donor d_prob="0.895" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143510" g_stop="143576" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="409" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E574656" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142065" e_stop="142066"/>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142434"/>
          <exon e_start="143064" e_stop="143165"/>
          <exon e_start="143279" e_stop="143359"/>
          <exon e_start="143510" e_stop="143576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTATCCCTAGCAGGGAGGTTTGAGTGTTTGAACTCATCCGTTTTCCATGTTTTAATTATTACTTTCATTATTTTGACTATTGTTCTGCTAATATAAATAGTAACTTGAGTTCTTTATATCAGGTCCATTATTATGTGCAATCACACATTCAGTTCAATGAA-TATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAG</genome_strand>
        <mrna_strand>CT..........................................................................................................................GTCCATTATTATGTGCAATCACACATTCAGATTAATGAATTATCGCGATCGTGTGGTTCTG..........................................................................................CCTGCTGCAAGTAAGAAGAATGGGAAACATATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCCATCGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTGAACGCTCCCTATATCTTTTCAGCTTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTGCAGGAGAGAACTCGAAAAAAGGTTCAAGTTTTATCAGGGTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAGATACTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551765" ref_strand="+" ref_description="SGN-E551765 [cTSB-1-M15]">
      <seq>aaagcatcggtccattattatgtgcaatcacacattcagttcaatgaatatcgcgatcgtgtaattctgcctgctgcaagtaagaagtatgggaaacgtatcagcaaatctctgaaggttttagatatgaccggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcagcctgttggaaggtagtcaaacctcttctacaggagagaacccgaaaaaaggttcaagttttatcaggttgtggacaggatgatctattgaagatcatggactattcgtcactgccccatttttgccggagagaaggttctggatcttccaaatactcaggcagctcaagtgaaaattgttattccctggatcatccattccaccagcaactttatgattacataaagcagcaggcattgcttcgcagacctgttcggccagttaaacagggctctgtccatgtggattttcctgatgctgtcactgaggggactgagtttgttcagacgttggcatcagaatttcaaaagttcggtaagcaaaatggactttctcaatcactagatgatcttaatatcaatgatcatcaagcatagataataagagtttgggtcattatgcactcgctgacaattctggattctcatgcaagtacagtattaatagctcgagcagtatagcagaggttttctcctaattagacgcctcactcaaattttatatgttatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="141884" stop="144267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142189" g_stop="142248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="69" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142339" g_stop="142434" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="165" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143064" g_stop="143165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="267" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143279" g_stop="143359" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="348" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="143510" g_stop="143967" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="806" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E551765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142189" e_stop="142248"/>
          <exon e_start="142339" e_stop="142434"/>
          <exon e_start="143064" e_stop="143165"/>
          <exon e_start="143279" e_stop="143359"/>
          <exon e_start="143510" e_stop="143967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTGGTAAAAAGGATTCATAAATCACTTTCCTTTGTGTATGTCTGTGCGCGCTTTAATCCCTTAAATTTTACTAAGTTGATTCATATGTCACAGCCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAGCAGAGGTTTTCTCCTAATTAGACGCCTCACTCAAATTTTATATGTTATAG</genome_strand>
        <mrna_strand>GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG..........................................................................................CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAGCAGAGGTTTTCTCCTAATTAGACGCCTCACTCAAATTTTATATGTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235283" ref_strand="+" ref_description="SGN-E235283 [cLED-11-K19]">
      <seq>cggcttgaaactttcagctctaaaccaaataaagctattgactataatttcctcaattgatgaccttaattacccggagaaggtagttgcatactacattgtcaatgctccctatatcttttcagcctgttggaaggtagtcaaacctcttctacaggagagaacccgaaaaaaggttcaagttttatcaggttgtggacaggatgatctattgaagatcatggactattcgtcactgccccatttttgccggagagaaggttctggatcttccaaatactcaggcagctcaagtgaaaattgttattccctggatcatccattccaccagcaactttatgattacataaagcagcaggcattgcttcgcagacctgttcggccagttaaacagggctctgtccatgtggattttcctgatgctgtcactgaggggactgagtttgttcagacgttggcatcagaatttcaaaagttcggtaagcaaaatggactttctcaatcactagatgatcttaatatcaatgatcatcaagcatagataataagagtttgggtcattatgcactcgctgacaattctggattctcatgcaagtacagtattaatagctcgagcagtatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="142101" stop="144217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142401" g_stop="142434" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143064" g_stop="143165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="136" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143279" g_stop="143359" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="217" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143510" g_stop="143917" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="625" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E235283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142401" e_stop="142434"/>
          <exon e_start="143064" e_stop="143165"/>
          <exon e_start="143279" e_stop="143359"/>
          <exon e_start="143510" e_stop="143917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTTGAAACTTTCAGCTCTAAACCAAATAAAGGTATATTCCCTCAAAAGTTCTAATCTCGTTTAGTTTTGTTCTTTCAAAATATGATGTAATGGACTTATGGTCTAGCTCAATCCCGTAAGCTAGCTAATGAGGGGAGGCTTACCCAAGATCATATTAGGAGACCACAACCCATTCCCTCATTCAGACACGCTTAGGATCAGAAAACTAGAGTGTGCATGATATAGCATGAGAGCACAATATTGAGAAACACAACAAAATAGATCGACGAGGCTGGCTTTGATAGCATGTCAAGAAATGGTCTTTTGGTCTAATTCAATCTCAGAAGTTAGCTAATGAGGAGAGGATTACCCCATACCGTACAAGGAGACCACAACCCATTTCATCAACCAATAGGCAGTTAATACAGTATTATTTGATTTGTTAAATTGGGGAAGATTTCGATGGTTGCTGATCTTTCATGTAGTTTTTTTTCCTTTCCACTCTTCGCTAGTGCAAAGAACAAAGATATTTCTTTTGCAGAAGAGTTTGTAATTGCAAGACTTCTGTCTATGTTTAATCATATTGACTGATGTATATCTTTATTTGAGAATTACCTTGGAACTGTTCCTGTAGATCTTTGGATAAAAATAGACTAACTGAATGTTATTGCTATCATTCAGCTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAGGTTCGTCTCTTATTTATACAATTTATACAATACAATTCTCTTTTCCTTTTCCTTTTTGTTACTCTATCAATTATTTCAATTTTCTAATTTGTTGTAACATATGATTTCATTAGGTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAG</genome_strand>
        <mrna_strand>CGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG.................................................................................................................GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421745" ref_strand="-" ref_description="SGN-E421745 [STM-33-K2]">
      <seq>aaaaaagttcaagttttatcagggtgtggacaggatgatctatgaaagatcatggactattcgtcactgccccatttttgccggagagaaggttctggatcttccagatactcaggcagctcaaatgaaaattgttattccttggatcatccattccaccagcaactttatgattacataaagcagcaggcattgcttcgccgacctgttcggccagttaaacagggctctgtccatgtggattttcctgatgctgtcactgaggggactgagtttgttcagacgttggcatcagaatttcaaaagtttggaaagcaaaatgggcttgctcaatcactagatgaccttaatatcaatgatcatcgagcatagataataagagtttgggtcattatgcactctacctgctgacaattctggatgctcatgcaagtatagtagtattaatatctcgagcagtatagcagaggttttctcctaattagtagcctcactcaaattttatatgttatagttgcacgaggggcattttcaatatacctagtatgtataggggaaatgcggttgacatttattatttttatgttagatgtacatagaggcatatgttgcttgagctcttactagtcaccacatgtattaataatacaaattatccatcactgatgctgacccttttatgtattgacactatgatataaataatgtccagcacaatgagtgaagctggttgaggaaaaaaaaatataggattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="143012" stop="144472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143312" g_stop="143359" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150">
            <donor d_prob="0.895" d_score="0.92"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143510" g_stop="144170" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="716" r_length="668" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="737" polyA_stop="747"/>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E421745" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421745" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="143312" e_stop="143359"/>
          <exon e_start="143510" e_stop="144170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAGGTAACAGTTCTTGACAATTGTTTGGTTGTCATTTCCTTTATCTTCTATGAGGATGTAGTAATGTACCACTACCTTGTGAAGGAATAATATTGTGTTATTCGTTTACGGAGTTGAGAGATCTAACTCTGTCTGATCTGTTAACTTGTGTAGATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCA--CT--C-GCTGACAATTCTGGATTCTCATGCAAG--TA-CAGTATTAATAGCTCGAGCAGTATAGCAGAGGTTTTCTCCTAATTAGACGCCTCACTCAAATTTTATATGTTATAGTTGCACGAGGGGTATTTTCAATATACCAAGTATGTATAGGGGAGATGCGGTTGACATGTATTATTGTTATGTTAGATGTACATAAGAGGCATATGTTGCCTGAGCTCTTACTAGTCATCGCATGTATTAATAATACAAATTATCCATCACTGATGCTGACCCTTTTATGTATTGACACTATGATATAAATAATGTCCAGCACA</genome_strand>
        <mrna_strand>AAAAAAGTTCAAGTTTTATCAGGGTGTGGACAGGATGATCTATGAAAG......................................................................................................................................................ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAGATACTCAGGCAGCTCAAATGAAAATTGTTATTCCTTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCCGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTTGGAAAGCAAAATGGGCTTGCTCAATCACTAGATGACCTTAATATCAATGATCATCGAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCTACCTGCTGACAATTCTGGATGCTCATGCAAGTATAGTAGTATTAATATCTCGAGCAGTATAGCAGAGGTTTTCTCCTAATTAGTAGCCTCACTCAAATTTTATATGTTATAGTTGCACGAGGGGCATTTTCAATATACCTAGTATGTATAGGGGAAATGCGGTTGACATTTATTATTTTTATGTTAGATGTACAT-AGAGGCATATGTTGCTTGAGCTCTTACTAGTCACCACATGTATTAATAATACAAATTATCCATCACTGATGCTGACCCTTTTATGTATTGACACTATGATATAAATAATGTCCAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715416" ref_strand="-" ref_description="SGN-E715416 [FB14AH04]">
      <seq>ttttttttccccccttaaggggggaagggggttcgggcccccccccccggatttttttttttttttttttttttttttttttttttttttttttttttttttggtgctaatgttactggttccatacaccacaaaatgcttacaaatctacagttcacaagaatccgcggatcatatgaaggagggaggaactacaacagacgcacttctgttactaatctaaacaaacaaaatatacaaaatgaagacacaagactacaacaaaaaccgagctgcaacacaggatcggttcgtcgggtaagttaatgccaacttactacactagagctgtacaatgcctaagagaactgctattgatgcatatcagttacctctagaccgcagctacacaaactatgggaatgcacattcttgtccttgctccctaccttttaataaacctgtgacctaccattttctatgtggtaaactgtacttcataaacttattaatgttactgttaatggtatcatcttcctaggatgacggtatttggattgatgctacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="16362" stop="153190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145609" g_stop="145631" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.609"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145632" i_stop="146414" i_length="783">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146415" g_stop="146494" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="102" r_length="79" r_score="0.637"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="146495" i_stop="152443" i_length="5949">
            <donor d_prob="0.000" d_score="0.66"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="152444" g_stop="152890" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="549" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E715416" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715416" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="145609" e_stop="145631"/>
          <exon e_start="146415" e_stop="146494"/>
          <exon e_start="152444" e_stop="152890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATTAGCCTTTTTTGGGGAGCAACCAGAAGTGCCAGTCTCACCAAACAAAGTAACAGCAGCTTTGACAGATTGAAAAGGTGATCTGGTGTCTATCTCTCCGACCTCATGACGACTTGTAGGAGAACCACCTATGGTTCGAGTTACTATTATTCGCGGAGAACCTGATGGACTACTCATTGGAGAAGGTGTGTATCTTGGAGAACCTCCATTTTGCTTACGGTTTCTTAACATTCTTCTGTCTGCTGAATCCTACATCACAATGCCATCATCTTATGTTACTTACTCAGTACTCTTCTCTTTTTACAGTTCATGTTAATTCACTATGGTTTACACCTATGTATTGAAATACTCAATCACATGAAAATTATTGGATTAAATATGTTGGCCCAATTGAAAAGAGTTTTCAAAATAAAAACTTAGCTTTACATCATTTTATATATTTGACCGAACAATAATCATCATATATATTACGGAAAGTATGAAGAAGTCCAGTCAAATTTAGATTACCATTTTACCTTCTTTTTTTTTTTAAAAAAAATAAATATTTTACCCTTTTTAAAAAATAATAAAAATAGATCAACTATATATTCTACATTAATGATCACAACTATGATTAAGCCTATACCCTTCGGGGTGGCTCAATGGTTAAGGCTTGGGACTTTCATGTTGGAGGTCTCAAGTTCAAAGCAAGAGGTTTGCCTTTTGGGTCGAGCTTATCGCACCTGATATGCCTAATGCGGGTTATCTCTCTTATGTGATTTGTGAGTTATTCTCCTATGTGATTTGTGAGTTATTGCACAGGAATAGAGGTTTGCGCGCACCCAAAAGGCTACTTCAATTATTCTTTTTTCGTTTCTCTTTTTCTATTTTTACTTTTTTGGGTTCCTTTACTGTAGATCTTCTAGGTACAGGAGAAAATAATAATACCATTGTCTTTTTATATTTGGAAGACAATAGATCTTTATCACTATGTATGGATTAGAATGATATAAAGACATATACTATTTTATACATGATAATTTTTATATTTTAGTTTTTATTCTAATTGATGTAAGATGAAGAATACACATCTCCCGAAGATGTTTGGAGATGTTGCTAGAATTCAAATTTTGGTATTATTTCATGTAAATTGATTTCTTTGTAAGTGATTTTTATATTTAAATTCTTAAAATTTTATTTTTACGTTTTCAAATTGAATATGGGATCTACGTGTAAAGCACGTAATGAAAGATTATTGAGGATAAATTATATCAATATATTCATACCATTACATTTTATATTATCTTAAGATATTTCATGCTTGATGGCAAATGCAACATTCTATCGTTAATATTGTTATTCTAACATTTTCTATATGATAATTCAATAATATGGAATAAGCATGAAGACTCCAAACCAAACATTTCATAATGAAATGAAGTAGAACCAATAAACATATTTGCCTATCTTTGAGATTATGATAAAAATAATTACTCCATATTTTTACATTTATAATAATAATAAAAAATGATAAAAATGAAGGTAGATTTCAAACACCTCTAACTAGTACATACCTGACAAATAAGCTTGTAACTTGCCTTATTCAAAGTCAGGATCCAACAGATAGCGTTTATAAGCTAGTTAATTAATGTTTTATCATATGATCTCAATGATATATATCAAGATGTGTCTTTGTGTTTATTACTTAAAGGTAAAAAATATATGAATGTTTGTAAAAACTCAAAGTTGCATCTTCTTTTCCCCTGGTAGAAAATTATAAAGAATAAATAGGTTATACAGGGGTAAGAAAAAAGAAGAAAATCACACAAGACACAGATGGCTATAGTTTCATATGTCTAATTTTTTTTTAAAATTATTATTGCATTACACAATGCAATGGCAGAATATACCAATTTTTTTTTTATTTTTTCTCTTTGTGAAGTTGTTCATTTCCAAGAGGGGTTTTTGCTGAATAAACGCAAAACCATACAAATAATGGCTGTTGAGGGAGAAATGGCCACAAAAATGACAAATGTGAGGTGCAATGGATATTATTCTCTTTTTTAGATATGAATTTTGTAACTCGGAAATAAAAAAATGCCCATAAATTACGCAATTCATGGATACATATCAATCAGAATATAGTTGAAAATGTGTATAGTTGACATCAAGGTAACAATACTTTTCTCAGCTTTAATGCATCGATTTCTTAAAGATAGCAGTCAAAATGACGATGAGCTTCACCAAAAATACAGAACAGCAATGGTATGTTAATCCATCAGCTCAATGCTGCTATTGAAAAGAACTAGGAGAAGCAATGTTCTAACAAGGATTTAGCTGGAGCACAAGTACACACCATTATGAATATATATAATACATTTGAGATACAACTAAGTGCTGGCTCTCCTACTGGATATATCACACATGCTAAACCTTTACCTGCGACAAGAAAGTAAATCTAAGGACCAACCAATCCTAACTTCAACAGATCTATCTCCGTCTTACTTAGAGGGAGCTGCAGAAGGGAGATCGATCAATATGATCTTCAGTTCTATATCCCCAGAATCCACATCACAAAGCCTCAACCAGACATCTTGAACAACCTCACCATTCACCCAATTAATACTGCTATCCGCTGCTAGACAGTTATCACTCTCTGGAATAACCTTCCTCAGTGTTGTTCCTTCAGCGGTAACCCCAAGAATCTTTCTCAATCTAGCAGAAGCAACTAAAGGCTGAAGGCTGAGATGAGCATTTCCCATTTTGTCATCGGCCTTGAAGTGGTCTTTGTCAAACACTTGCTGTCACAATTGAATTTTCATTAGCTAAAAAAAAACTTAAAAGGTATAAAATTTTGAAATGGCTATTCAAGAACTGAAAAGATCACGTTTCAGGTAGTAAAGATACAACCCTGAAGACAAAAAAGCCTAGTGAAAATGTTTTCTTTTTCTTTTTGGCATGGAGCAGTACTTCTCTTACATCGAAGTTCATCTTCAACATACATGTAAAATATCATCACCGAAGCATAGAAATTAAAAACTGTGTGCACGCACATGCCCGCTCACTACAAAGAAGGATCAAAGAACAGTGCAGCAACTGAAGCTCAGTCATAGCAAGAATCCTCCTAATATATAGTGGATAACTGAAAGACCTGTTTGACCAACTTATCTGATCATAACATTAAAACAAAATTATGTTGAAGAATGAAAAAGTACCACATCGGTGGTTAATGAGATGGGTAGTCTCTTTATTTAACTAAATCTATGATTTTTTTCCCTTTCATAAGAGTGACAATATCAGCTTAGAGAACTCTAACTCCCAATCTTTGGACAATAAGCTACAAGGTACAGTCTGATATTTTCTTCTCCCCATATCCTGTAAAGACCCCTCTCCCGCTGTTTGATTGTTTTCCTTTTTGTTTCATCCGCTTAGTTTCATCATATCATCTGTACTATCACACCACTTGGAAGTGAAAAAATTACATAAAAAATGGGTAAGATAATTTTTACCTATTCCAAAGTGACTGCATTATTATCATTTATGTTTCACCCATTAAGGAATTTGCCTTTATATTATCTTTCAAACAGTTCAATATGCTCATGGACTAACATGGAAGAACTAACCAACTGATTGTGACCACCTCTCAAAAAAGAACGACGGATAGCTATGTTAGCTAGGCACCTGCCTGATCAGGGTTCCCATCCGAACTAGTGCCTTAAGCAGGAAGGCGAATGAAACTTATTTATGTCCTAAAAAGATCTTTTATTGCTTTTTATATTTGTGCATTCAAATGCATGATTAACTCCCTTGAGAGCATTATATTTTCTTGATAACTCCATATTGTGGTGTAATTCTTGAGCATAGACAGTTCTAAGACAAATTCCTATAAAGAATAATATACATGGCTGCTTAAACCAGACATACACCTTGATCAACATCCACAAATTACATGCTATGAATTTCTTCAAAATATAGTTTTTGTCCACAGAGCTACTCGCATATAATACCTCAGCAGCAAAATGAAAGCTTAAATATCACTTCTCTCAACATGAAAGCTATCATATGCCTTGATACTAGACAAAAACGTTCCTTCACTTGAAAGTAGAAGTTGCTAGCTCATGATATTAAATTCTCAAGAGGCAGCGTGTACATTGGAGAAAAACTACACAGCCACCAACTTATTGTATTAAAATCTTGCCCAAATTGAAAAATATGGACCTTCGAGTAGTGTTGTTTCCTGAGGCGAATCTAGGATTTTTCGAACATGGGTGCACCAAGTAAAACGTATTGAAGTGGGAATTGATCCTTAATCCTCAAGGTCAAAAGCTCAACATTTAACCATGTGGACGATTTAGACTTGTTGTAGTACGGGTGCCACAGTATAATATCTAATTTTACGAAGATATCACGGGTGCTGGTGCCCTATCTTTTGGCTCTAAATTTGCCACGGGCTGTTTCCATGTAAGAGCTTTCTCTTAGTCTTCCTAACCACTCACTTCAATTTAGGTTTCCTCTTTCGATTATTTCATTTTATGCTCTCTTCATTAGCTTCTTTCTCCATTTCTCTGGGGGTTTTGCCGGTCAGGTGTATAAAGATTAAGCTTGCGGTCTCTCATGCATCAACAATTATCGGATTATCATCCTTGGACTTTTAGTTCATTATTAATAATTTATGGTTGTTTCCCCAAGTGAAACATATAGGATCCAATGGTTACTTCATCATAAAAACTATTTTTCGGTTCTTAATGAATGCTATGTACCCATTCATTCCATGATATATCTCAAGATAACCATTTTCCTTTCTCCATTTTTATCTCTGCTAGATTCCTATATTTCCGTTTATACAATTCTGTCACTCAGATATACAAACATCACACTTAAGTATGTCGAATTCACGGACACCTTTATCCAACCTTAACAAGCTGTAACATTTACACATGATGCCAACAATTTTCATTCTTTAAGAAATAATCCAAGATTATGCAAGTGTAGTTCAAAACAGTATGAGACACAAGATTAGTCAAGTAAATGAATTTGAGGCTTGAGAGGGTTCAAAACTCACCAATTTGAGAACCTGAGCATGTTCTGAAATGGAAAAATGAAATTCTTCATTCCAAACAGGATTAAGGCAGCTATTTATGACCTTTGTTTTTGCAGTCTGATACAACAAATATAGATAATTTTATATCGATTCAACCTAAAAATTGAATCTTTTCTTGAAGAATTAAGTCTTTTTGTTACCTGATTACCCAGTTTGAGAATGACATAAGGATCACTGCTCTTAAAGTCCCGAATCACCAAACGCCTGCCTTGAACAACTATAACTTTTACCTGTCCAAATTTGCTTCCCATATTGACTGAATTTGACATATACATTCAAATTAGCACATGAAAACAAATAAAATTACTACTCCATTAAAGCAGAAAAAACCCTTTTTTTAGGGTACAATAAAATGACTCAACTGAGAAGAACAACAACAATACTCGCTGACCAAAAAGAGGCGAAGCCAAAATTAAAAATTTGAGTTCTAAATTAATTTTCTGCCATGATTCATATGCTATTATACATATATTTATTTATTTTTTTAATATAAATATAAAATCTACGAAAAAAACTTACACGGTCTCAATTAGAGCTAGCAAATGTTGACTCTTCTTCTATTCTGTTCTCTTCTCTTGACCCAGTAAGCAAAATGGACTAAACTTTATTTGAGAGTTTGGCAAAATTTTACTTTAATTATTACTATGTGAAAATGATTTGCTATTGGATTTTATTTATTACAAACCAAATTATCATTATTCTATTTACGCGCTTTCCTACTTATGTCCAATTTTTTTAAATAATTAATTTGATATTCTTTTTCTTTTAAATTAATATGTTTTTAAAATTATAAATGAGTTTCCCTTTGCTTTTAACTTTATTTTATACATCAGATTTTATTAATTTTTTTTGGCAAGTAGAGAAAATGAGGGGTAATTATGTAGAGAATAGTTTATCGCTGAATTTGGACGAAGGAAAATACTTAAATTTGTCATGTTGCATTTTTTAAAAGTCAGTTGACTTATTTTTTAAATTTAAATTAGATTTCATTAATTTGATTTTTTAAATGAAAAAAATTTAGATATCTAAAAATTATACGAAAAGTATTATACGTTGCAATTTTTTATATATTAAATATATCCTAAAATGTTAGTTAAAATTTTTATAATTCAACTCTAAAATTGAAAAGTATGACAATAATAGTGAACGAAGGAAGTACCTTTTTAAGCCGTAGATACAATACTTCATGAATAAAATAAATACGCCCATAAAATAAGGAAAAAATGACAGTAAGAGTTAGAATTCATTAAGAAAAACGCAATTTGTATTTTGTTTCAAGTTGGATCAGTCCCAATTTGTAATTAGCGATAATTAGTTTTGTATGTATAAAAGAACTTACTTTAATACATAGATGAACACTGCTTAATTCTCATTCATCTTTTCATGCCAATTAAGGATAAGGTGTTTCTCACGTGTTGTTCAGTTTTTGCGTAAAAATTACTTTTTGATAATTTAATAAAATTCACCAAAGTGATAATTGAAGCAAAAGTGAGATGATTCTTATGTAAAAAGAAGCGATTTTTGTGTAATGAACTCAGCCGGACGATCATCAACTGTTTATCAAAACACACATCTAACCATCAATTTTCTCTTTTCCTACATAATGGTGGAAACACGACTCATAATTGATGCGTGTTTTTGATAAATAGTTGATCATAGTTCAAATAGAAAAAGTGAATATCTAATAGTTCAAGTAGAGAACACCTCATTCACAAATATTGAGAATTAGAAGCAAAAAAGAAGTGAAAAGGGTGCTAATGTTACTGGTTCCATACACCACAAAATGCTTACAAATCTACAGTTCACAAGAATCCGCGGATCATATGAAGGAGGGAGGAACTACAACAGACGCACTTCTGTTACTAATCTAAACAAACAAAATATACAAAATGAAGACACAAGACTACAACAAAAACCGAGCTGCAACACAGGATCGGTTCGTCGGGTAAGTTAATGCCAACTTACTACACTAGAGCTGTACAATGCCTAAGAGAACTGCTATTGATGCATATCAGTTACCTCTAGACCGCAGCTACACAAACTATGGGAATGCACATTCTTGTCCTTGCTCCCTACCTTTTAATAAACCTGTGACCTACCATTTTCTATGTGGTAAACTGTACTTCATAAACTTATTAATGTTACTGTTAATGGTATCATCTTCCTAGGATGACGGTATTTGGATTGATGCTACTTG</genome_strand>
        <mrna_strand>TTTTTTTTCCCCCCTTAAGGGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-GGGGGTTCGGGCCCCCCCCCCCGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTAATGTTACTGGTTCCATACACCACAAAATGCTTACAAATCTACAGTTCACAAGAATCCGCGGATCATATGAAGGAGGGAGGAACTACAACAGACGCACTTCTGTTACTAATCTAAACAAACAAAATATACAAAATGAAGACACAAGACTACAACAAAAACCGAGCTGCAACACAGGATCGGTTCGTCGGGTAAGTTAATGCCAACTTACTACACTAGAGCTGTACAATGCCTAAGAGAACTGCTATTGATGCATATCAGTTACCTCTAGACCGCAGCTACACAAACTATGGGAATGCACATTCTTGTCCTTGCTCCCTACCTTTTAATAAACCTGTGACCTACCATTTTCTATGTGGTAAACTGTACTTCATAAACTTATTAATGTTACTGTTAATGGTATCATCTTCCTAGGATGACGGTATTTGGATTGATGCTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374098" ref_strand="+" ref_description="SGN-E374098 [TUS-33-D17](-)">
      <seq>ttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttttgctagattgagaaagattcttggggttaccgctgaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaaaatgtttggttgaggctttgtgatgtggattttggggatatagaactgaagatcatattgatcgatttcccttttgcagctccctttaagtaagacggagatagatctgttgaagttaggattggttggtccttaaatttactttcttgtcgcaggtaaaggtttagcatgtgtgatatatccagtaggagagccagcacttagttgtatttcaaatgtattatatatattcataatggtgtggacttgtgctccagctaaatccttgttagaacattgcttttcctagtttttttcaatagcagcattgagctgatggattaacataccattgctgttttgtatttttggtgaagctcatcgtcattttgactgctatctttaagaaatcgatgcattaaagctgagaaaagtattgttaccttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="150995" stop="16372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150695" g_stop="150655" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="148393" g_stop="147759" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="676" r_length="635" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="147758" i_stop="147523" i_length="236">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="147522" g_stop="147507" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="692" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E374098" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150695" e_stop="150655"/>
          <exon e_start="148393" e_stop="147759"/>
          <exon e_start="147522" e_stop="147507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTGATGTCAACTATACACATTTTCAACTATATTCTGATTGATATGTATCCATGAATTGCGTAATTTATGGGCATTTTTTTATTTCCGAGTTACAAAATTCATATCTAAAAAAGAGAATAATATCCATTGCACCTCACATTTGTCATTTTTGTGGCCATTTCTCCCTCAACAGCCATTATTTGTATGGTTTTGCGTTTATTCAGCAAAAACCCCTCTTGGAAATGAACAACTTCACAAAGAGAAAAAATAAAAAAAAA</genome_strand>
        <mrna_strand>TTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTTTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAAATGTTTGGTTGAGGCTTTGTGATGTGGATTTTGGGGATATAGAACTGAAGATCATATTGATCGATTTCCCTTTTGCAGCTCCCTTTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAAATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATTTCAAATGTATTATATATATTCATAATGGTGTGGACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTTTCCTAGTTTTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTTTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTAAA............................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225610" ref_strand="-" ref_description="SGN-E225610 [cLEL-17-I8](-)">
      <seq>ttttttttttttttttttttgagctttaatgcatcgatttcttaaagatagcagtcaaaatgacgatgagcttcaccaaaaatacagaacagcaatggtatgttaatccatcagctcaatgctgctattgaaaagaactaggagaagcaatgttctaacaaggatttagctggagcacaagtacacaccattatgaatatatataatacatttgagatacaactaagtgctggctctcctactggatatatcacacatgctaaacctttacctgcgacaagaaagtaaatctaaggaccaaccaatcctaacttcaacagatctatctccgtcttacttagagggagctgcagaagggagatcgatcaatatgatcttcagttctatatccccagaatccacatcacaaagcctcaaccagacatcttgaacaacctcaccattcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="16372" stop="148509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="147511" g_stop="147533" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.783"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="147534" i_stop="147783" i_length="250">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.389" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="147784" g_stop="148209" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="449" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E225610" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225610" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="147511" e_stop="147533"/>
          <exon e_start="147784" e_stop="148209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTTTTCTCTTTGTGAAGTTGTTCATTTCCAAGAGGGGTTTTTGCTGAATAAACGCAAAACCATACAAATAATGGCTGTTGAGGGAGAAATGGCCACAAAAATGACAAATGTGAGGTGCAATGGATATTATTCTCTTTTTTAGATATGAATTTTGTAACTCGGAAATAAAAAAATGCCCATAAATTACGCAATTCATGGATACATATCAATCAGAATATAGTTGAAAATGTGTATAGTTGACATCAAGGTAACAATACTTTTCTCAGCTTTAATGCATCGATTTCTTAAAGATAGCAGTCAAAATGACGATGAGCTTCACCAAAAATACAGAACAGCAATGGTATGTTAATCCATCAGCTCAATGCTGCTATTGAAAAGAACTAGGAGAAGCAATGTTCTAACAAGGATTTAGCTGGAGCACAAGTACACACCATTATGAATATATATAATACATTTGAGATACAACTAAGTGCTGGCTCTCCTACTGGATATATCACACATGCTAAACCTTTACCTGCGACAAGAAAGTAAATCTAAGGACCAACCAATCCTAACTTCAACAGATCTATCTCCGTCTTACTTAGAGGGAGCTGCAGAAGGGAGATCGATCAATATGATCTTCAGTTCTATATCCCCAGAATCCACATCACAAAGCCTCAACCAGACATCTTGAACAACCTCACCATTCACCC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTGAG..........................................................................................................................................................................................................................................................CTTTAATGCATCGATTTCTTAAAGATAGCAGTCAAAATGACGATGAGCTTCACCAAAAATACAGAACAGCAATGGTATGTTAATCCATCAGCTCAATGCTGCTATTGAAAAGAACTAGGAGAAGCAATGTTCTAACAAGGATTTAGCTGGAGCACAAGTACACACCATTATGAATATATATAATACATTTGAGATACAACTAAGTGCTGGCTCTCCTACTGGATATATCACACATGCTAAACCTTTACCTGCGACAAGAAAGTAAATCTAAGGACCAACCAATCCTAACTTCAACAGATCTATCTCCGTCTTACTTAGAGGGAGCTGCAGAAGGGAGATCGATCAATATGATCTTCAGTTCTATATCCCCAGAATCCACATCACAAAGCCTCAACCAGACATCTTGAACAACCTCACCATTCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733604" ref_strand="+" ref_description="SGN-E733604 [LB10BH02]">
      <seq>cgttttttctgctttaatggagtagtaattttatttgttttcatgtgctaatttgaatgtatatgtcaaattcagtcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctgaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatctcccttctgcagctccctctaagtaagacggagatagatctgttgaagttaggattggttggtccttagatttactttcttgtcgcaggtaaaggtttagcatgtgtgatatatccagtaggagagccagcacttagttgtatctcaaatgtattatatatattcataatggtgtgtacttgtgctccnagctaatccttgttagaacattgcttctcctagttcttttcaatagcagcattgagctgatggattaacataccattgctgttctgtatttttggtgaagctcatcgtcattttgactgctatctttaagaaatcgatgcattaaagctgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="151323" stop="147475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151024" g_stop="150834" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150750" g_stop="150655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="287" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148393" g_stop="147775" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="906" r_length="619" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E733604" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151024" e_stop="150834"/>
          <exon e_start="150750" e_stop="150655"/>
          <exon e_start="148393" e_stop="147775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCC-AGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAA</genome_strand>
        <mrna_strand>CGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCNAGCT-AATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723056" ref_strand="+" ref_description="SGN-E723056 [FC19AH05]">
      <seq>gaaaagtttagtccattttgcttactgggtcaagagaagagaacagaatagaagaagagtcaacatttgctagctctaattgagaccgttcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcaaaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctgaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatctcccttctgcagctccctctaagtaagacggagatagatctgttgaagttaggattggttggtccttagatttactttcttgtcgcaggtaaaggtttagcatgtgtgatatatccagtaggagagccagcacttagttgtatctcaaatgtattatatatattcataatggtgtgtacttgtgctccacctaaatccttgttagaacattgcttcccctagttcttttcaatagcaacattgagctgatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="151599" stop="147565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151301" g_stop="151213" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151212" i_stop="150950" i_length="263">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150949" g_stop="150834" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="205" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="150750" g_stop="150655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="301" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148393" g_stop="147865" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="830" r_length="529" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E723056" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151301" e_stop="151213"/>
          <exon e_start="150949" e_stop="150834"/>
          <exon e_start="150750" e_stop="150655"/>
          <exon e_start="148393" e_stop="147865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGTTTAGTCCATTTTGCTTACTGGGTCAAGAGAAGAGAACAGAATAGAAGAAGAGTCAACATTTGCTAGCTCTAATTGAGACCGTGTAAGTTTTTTTCGTAGATTTTATATTTATATTAAAAAAATAAATAAATATATGTATAATAGCATATGAATCATGGCAGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATT</genome_strand>
        <mrna_strand>GAAAAGTTTAGTCCATTTTGCTTACTGGGTCAAGAGAAGAGAACAGAATAGAAGAAGAGTCAACATTTGCTAGCTCTAATTGAGACCGT.......................................................................................................................................................................................................................................................................TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAAAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCACCTAAATCCTTGTTAGAACATTGCTTCCCCTAGTTCTTTTCAATAGCAACATTGAGCTGATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210776" ref_strand="+" ref_description="SGN-E210776 [cLEC-68-I2]">
      <seq>agagtcaacatttgctagctctaattgagaccgttcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctaaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatctcccttctgcagctccctctaagtaagacggagatagatctgttgaagttaggattggttggtccttagatttactttcttgtcgcaggtaaaggtttagcatgtgtgatatatccagtaggagagccagcacttagttgtatctcaaatgtattatatatattcataatggtgtgtacttgtgctccagctaatccttgatagacattgcttctcctagttcttttcatagcagcattgagctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="151546" stop="147567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151246" g_stop="151213" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151212" i_stop="150950" i_length="263">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150949" g_stop="150834" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="150" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="150750" g_stop="150655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="246" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148393" g_stop="147867" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="770" r_length="524" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E210776" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151246" e_stop="151213"/>
          <exon e_start="150949" e_stop="150834"/>
          <exon e_start="150750" e_stop="150655"/>
          <exon e_start="148393" e_stop="147867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGTGTAAGTTTTTTTCGTAGATTTTATATTTATATTAAAAAAATAAATAAATATATGTATAATAGCATATGAATCATGGCAGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGA</genome_strand>
        <mrna_strand>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGT.......................................................................................................................................................................................................................................................................TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTAAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCT-AATCCTTGATAG-ACATTGCTTCTCCTAGTTCTTTTC-ATAGCAGCATTGAGCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374099" ref_strand="+" ref_description="SGN-E374099 [TUS-33-D17]">
      <seq>agaaaattaatttagaactcaaatttttaattttggcttcgcctctttttggtcagcgagtattgttgttgttcttctcatcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctgaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatctcccttctgcagctccctctaagtaagacggagatagatctgttgaagttaggattggttggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="151435" stop="147756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151135" g_stop="151056" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151055" i_stop="150950" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150949" g_stop="150834" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="196" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="150750" g_stop="150655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="292" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148393" g_stop="148056" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="630" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E374099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151135" e_stop="151056"/>
          <exon e_start="150949" e_stop="150834"/>
          <exon e_start="150750" e_stop="150655"/>
          <exon e_start="148393" e_stop="148056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTC</genome_strand>
        <mrna_strand>AGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCA..........................................................................................................TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374606" ref_strand="+" ref_description="SGN-E374606 [TUS-15-P9]">
      <seq>agagtcaacatttgctagctctaattgagaccgttcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctaaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatctcccttctgcagctccttctaagtaagacggagatagatctgttgaagttaggattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="151546" stop="147761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151246" g_stop="151213" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151212" i_stop="150950" i_length="263">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150949" g_stop="150834" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="150" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="150750" g_stop="150655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="246" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148393" g_stop="148061" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="579" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E374606" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151246" e_stop="151213"/>
          <exon e_start="150949" e_stop="150834"/>
          <exon e_start="150750" e_stop="150655"/>
          <exon e_start="148393" e_stop="148061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGTGTAAGTTTTTTTCGTAGATTTTATATTTATATTAAAAAAATAAATAAATATATGTATAATAGCATATGAATCATGGCAGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGT</genome_strand>
        <mrna_strand>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGT.......................................................................................................................................................................................................................................................................TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTAAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCTTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429648" ref_strand="+" ref_description="SGN-E429648 [STM-52-M4]">
      <seq>tgttgtcccgttttctgctttaatggactagtatatttatttgttttcatgtatatgccaaattcagtcaatatgggagacaaatttggacaggtaaaagtgatggttgtacaaggcaggcgtttggtcattcgggactttaagagtagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaaccaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctgaaggaacaacactgaggaaggttatcccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgtgcaagatgtctggttgaagctttgtgatgtggattctggggatatagaactgaagatcaaattgatcaatcttccttctgcagctcccctctagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="151299" stop="147795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150973" g_stop="150834" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="183" r_length="140" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150750" g_stop="150655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="279" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148393" g_stop="148095" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="578" r_length="299" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E429648" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150973" e_stop="150834"/>
          <exon e_start="150750" e_stop="150655"/>
          <exon e_start="148393" e_stop="148095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTA</genome_strand>
        <mrna_strand>TTTTCATGTATATGCCAAATTCAGTCAATATGGGAGACAAATTTGGACAGGTAAAAGTGATGGTTGTACAAGGCAGGCGTTTGGTCATTCGGGACTTTAAGAGTAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACCAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATCCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTGCAAGATGTCTGGTTGAAGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCAAATTGATCAATCTTCCTTCTGCAGCTCCCCTCTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242901" ref_strand="+" ref_description="SGN-E242901 [cLED-31-E18]">
      <seq>aaaaaaagggttttttctgctttaatggagtagtaattttatttgttttcatgtgctaatttgaatgtatatgtcaaattcagtcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctgaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatctcccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="151332" stop="147813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151032" g_stop="150834" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150750" g_stop="150655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="295" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148393" g_stop="148113" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="576" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E242901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151032" e_stop="150834"/>
          <exon e_start="150750" e_stop="150655"/>
          <exon e_start="148393" e_stop="148113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTC</genome_strand>
        <mrna_strand>AAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300427" ref_strand="+" ref_description="SGN-E300427 [cLET-45-I12]">
      <seq>agaaaattaatttagaactcaaatttttaattttggcttcgcctctttttggtcagcgagtattgttgttgttcttctcatcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctgaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="151435" stop="147820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151135" g_stop="151056" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151055" i_stop="150950" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150949" g_stop="150834" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="196" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="150750" g_stop="150655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="292" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148393" g_stop="148120" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="566" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E300427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151135" e_stop="151056"/>
          <exon e_start="150949" e_stop="150834"/>
          <exon e_start="150750" e_stop="150655"/>
          <exon e_start="148393" e_stop="148120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATC</genome_strand>
        <mrna_strand>AGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCA..........................................................................................................TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457302" ref_strand="+" ref_description="SGN-E457302 [cPRO-2-G2]">
      <seq>gttttctgctttaatggactagtatttttatttgttttcatgtatatgccaaattcagtcaatatgggagacaaatttggacaggtaaaagtgatggttgtacaaggcaggcgtttggtcattcgggactttaagagtagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaaccaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctgaaggaacaacactgaggaaggttatcccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgtgcaagatgtctggttgaagctttgtgatgtggattctggggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="151320" stop="147846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151021" g_stop="150834" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150750" g_stop="150655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="270" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148393" g_stop="148146" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="518" r_length="248" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E457302" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151021" e_stop="150834"/>
          <exon e_start="150750" e_stop="150655"/>
          <exon e_start="148393" e_stop="148146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATAT</genome_strand>
        <mrna_strand>GTTTTCTGCTTTAATGGACTAGTATTTTTATTTG--TT--T-T-C--AT------GTATATGCCAAATTCAGTCAATATGGGAGACAAATTTGGACAGGTAAAAGTGATGGTTGTACAAGGCAGGCGTTTGGTCATTCGGGACTTTAAGAGTAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACCAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATCCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTGCAAGATGTCTGGTTGAAGCTTTGTGATGTGGATTCTGGGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204712" ref_strand="+" ref_description="SGN-E204712 [cLEC-14-P5]">
      <seq>agagtcaacatttgctagctctaattgagaccgttcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctaaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="151546" stop="147903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151246" g_stop="151213" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151212" i_stop="150950" i_length="263">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150949" g_stop="150834" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="150" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="150750" g_stop="150655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="246" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="148393" g_stop="148203" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="437" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E204712" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151246" e_stop="151213"/>
          <exon e_start="150949" e_stop="150834"/>
          <exon e_start="150750" e_stop="150655"/>
          <exon e_start="148393" e_stop="148203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGTGTAAGTTTTTTTCGTAGATTTTATATTTATATTAAAAAAATAAATAAATATATGTATAATAGCATATGAATCATGGCAGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAA</genome_strand>
        <mrna_strand>AGAGTCAACATTTGCTAGCTCTAATTGAGACCGT.......................................................................................................................................................................................................................................................................TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTAAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203890" ref_strand="+" ref_description="SGN-E203890 [cLEC-17-F9]">
      <seq>atttagaactcaaatttttaattttggcttcgcctctttttggtcagcgagtattgttgttgttcttctcagttgagtcattttattgtaccctaaaaaaagggttttttctgctttaatggagtagtaattttatttgttttcatgtgctaatttgaatgtatatgtcaaattcagtcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattggtgagttttgaaccctctcaagcctcaaattcatttacttgactaatcttgtgtctcatactgttttgaactacacttgcataatcttggattatttcttaaagaatgaaaattgttggcatcatgtgtaaatgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="151426" stop="150217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151126" g_stop="150834" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150750" g_stop="150517" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="527" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E203890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151126" e_stop="150834"/>
          <exon e_start="150750" e_stop="150517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTAC</genome_strand>
        <mrna_strand>ATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616181" ref_strand="-" ref_description="SGN-E616181 [65988]">
      <seq>ttttttttttttttacaagaatccacggatcttataaaggagggaggaactacaacagacgcacttctgtaactactctaaacaacaaaatatacaaaatgaagacacaagactacaacaataaccgagctgcaacacaggatcggttaattgggtaagttaatgccaacttactacactagagctgtacaatgcctaagagaactgctattgactcatatcagttgcctctagaccgcagctacacaaactgtgggaatgcacattcttgtccttgctccctaccttttaataaacctgtgccctaccattttctatgtggtaaactgtacttcataaacttattaatgtcactgttaatggtatcatcttcttaggatgacggtattcggcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="19302" stop="153182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151434" g_stop="151444" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.545"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151445" i_stop="152494" i_length="1050">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152495" g_stop="152882" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="398" r_length="387" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E616181" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616181" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="151434" e_stop="151444"/>
          <exon e_start="152495" e_stop="152882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAATTTGATATTCTTTTTCTTTTAAATTAATATGTTTTTAAAATTATAAATGAGTTTCCCTTTGCTTTTAACTTTATTTTATACATCAGATTTTATTAATTTTTTTTGGCAAGTAGAGAAAATGAGGGGTAATTATGTAGAGAATAGTTTATCGCTGAATTTGGACGAAGGAAAATACTTAAATTTGTCATGTTGCATTTTTTAAAAGTCAGTTGACTTATTTTTTAAATTTAAATTAGATTTCATTAATTTGATTTTTTAAATGAAAAAAATTTAGATATCTAAAAATTATACGAAAAGTATTATACGTTGCAATTTTTTATATATTAAATATATCCTAAAATGTTAGTTAAAATTTTTATAATTCAACTCTAAAATTGAAAAGTATGACAATAATAGTGAACGAAGGAAGTACCTTTTTAAGCCGTAGATACAATACTTCATGAATAAAATAAATACGCCCATAAAATAAGGAAAAAATGACAGTAAGAGTTAGAATTCATTAAGAAAAACGCAATTTGTATTTTGTTTCAAGTTGGATCAGTCCCAATTTGTAATTAGCGATAATTAGTTTTGTATGTATAAAAGAACTTACTTTAATACATAGATGAACACTGCTTAATTCTCATTCATCTTTTCATGCCAATTAAGGATAAGGTGTTTCTCACGTGTTGTTCAGTTTTTGCGTAAAAATTACTTTTTGATAATTTAATAAAATTCACCAAAGTGATAATTGAAGCAAAAGTGAGATGATTCTTATGTAAAAAGAAGCGATTTTTGTGTAATGAACTCAGCCGGACGATCATCAACTGTTTATCAAAACACACATCTAACCATCAATTTTCTCTTTTCCTACATAATGGTGGAAACACGACTCATAATTGATGCGTGTTTTTGATAAATAGTTGATCATAGTTCAAATAGAAAAAGTGAATATCTAATAGTTCAAGTAGAGAACACCTCATTCACAAATATTGAGAATTAGAAGCAAAAAAGAAGTGAAAAGGGTGCTAATGTTACTGGTTCCATACACCACAAAATGCTTACAAATCTACAGTTCACAAGAATCCGCGGATCATATGAAGGAGGGAGGAACTACAACAGACGCACTTCTGTTACTAATCTAAACAAACAAAATATACAAAATGAAGACACAAGACTACAACAAAAACCGAGCTGCAACACAGGATCGGTTCGTCGGGTAAGTTAATGCCAACTTACTACACTAGAGCTGTACAATGCCTAAGAGAACTGCTATTGATGCATATCAGTTACCTCTAGACCGCAGCTACACAAACTATGGGAATGCACATTCTTGTCCTTGCTCCCTACCTTTTAATAAACCTGTGACCTACCATTTTCTATGTGGTAAACTGTACTTCATAAACTTATTAATGTTACTGTTAATGGTATCATCTTCCTAGGATGACGGTATTTGGATTGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAAGAATCCACGGATCTTATAAAGGAGGGAGGAACTACAACAGACGCACTTCTGTAACTACTCTAAAC-AACAAAATATACAAAATGAAGACACAAGACTACAACAATAACCGAGCTGCAACACAGGATCGGTTAATTGGGTAAGTTAATGCCAACTTACTACACTAGAGCTGTACAATGCCTAAGAGAACTGCTATTGACTCATATCAGTTGCCTCTAGACCGCAGCTACACAAACTGTGGGAATGCACATTCTTGTCCTTGCTCCCTACCTTTTAATAAACCTGTGCCCTACCATTTTCTATGTGGTAAACTGTACTTCATAAACTTATTAATGTCACTGTTAATGGTATCATCTTCTTAGGATGACGGTATTCGGCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233888" ref_strand="-" ref_description="SGN-E233888 [cLEL-8-L89](-)">
      <seq>tttttttttttttttttttggngctaatgttactggttccatacaccacaaaatgcttacaaatctacagttcacaagaatccgcggatcatatgaaggagggaggaactacaacagacgcacttctgttactaatctaaacaaacaaaatatacaaaatgaagacacaagactacaacaaaaaccgagctgcaacacaggatcggttcgtcgggtaagttaatgccaacttactacactagagctgtacaatgcctaagagaactgctattgatgcatatcagttacctctagaccgcagctacacaaactatgggaatgcacattcttgtccttgctccctaccttttaataaacctgtgacctaccattttctatgtggtaaactgtacttcataaacttattaatggtactgttaatggtatcatcttcctaggatgaccggatttggattgatgctacttgctctccaggatgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="16372" stop="153207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151751" g_stop="151769" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.579"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151770" i_stop="152443" i_length="674">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152444" g_stop="152907" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="483" r_length="464" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-E233888" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233888" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="151751" e_stop="151769"/>
          <exon e_start="152444" e_stop="152907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTATATATTAAATATATCCTAAAATGTTAGTTAAAATTTTTATAATTCAACTCTAAAATTGAAAAGTATGACAATAATAGTGAACGAAGGAAGTACCTTTTTAAGCCGTAGATACAATACTTCATGAATAAAATAAATACGCCCATAAAATAAGGAAAAAATGACAGTAAGAGTTAGAATTCATTAAGAAAAACGCAATTTGTATTTTGTTTCAAGTTGGATCAGTCCCAATTTGTAATTAGCGATAATTAGTTTTGTATGTATAAAAGAACTTACTTTAATACATAGATGAACACTGCTTAATTCTCATTCATCTTTTCATGCCAATTAAGGATAAGGTGTTTCTCACGTGTTGTTCAGTTTTTGCGTAAAAATTACTTTTTGATAATTTAATAAAATTCACCAAAGTGATAATTGAAGCAAAAGTGAGATGATTCTTATGTAAAAAGAAGCGATTTTTGTGTAATGAACTCAGCCGGACGATCATCAACTGTTTATCAAAACACACATCTAACCATCAATTTTCTCTTTTCCTACATAATGGTGGAAACACGACTCATAATTGATGCGTGTTTTTGATAAATAGTTGATCATAGTTCAAATAGAAAAAGTGAATATCTAATAGTTCAAGTAGAGAACACCTCATTCACAAATATTGAGAATTAGAAGCAAAAAAGAAGTGAAAAGGGTGCTAATGTTACTGGTTCCATACACCACAAAATGCTTACAAATCTACAGTTCACAAGAATCCGCGGATCATATGAAGGAGGGAGGAACTACAACAGACGCACTTCTGTTACTAATCTAAACAAACAAAATATACAAAATGAAGACACAAGACTACAACAAAAACCGAGCTGCAACACAGGATCGGTTCGTCGGGTAAGTTAATGCCAACTTACTACACTAGAGCTGTACAATGCCTAAGAGAACTGCTATTGATGCATATCAGTTACCTCTAGACCGCAGCTACACAAACTATGGGAATGCACATTCTTGTCCTTGCTCCCTACCTTTTAATAAACCTGTGACCTACCATTTTCTATGTGGTAAACTGTACTTCATAAACTTATTAATGTTACTGTTAATGGTATCATCTTCCTAGGATGACGGTATTTGGATTGATGCTACTTGCTCTCCAGGATGCTGCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGNGCTAATGTTACTGGTTCCATACACCACAAAATGCTTACAAATCTACAGTTCACAAGAATCCGCGGATCATATGAAGGAGGGAGGAACTACAACAGACGCACTTCTGTTACTAATCTAAACAAACAAAATATACAAAATGAAGACACAAGACTACAACAAAAACCGAGCTGCAACACAGGATCGGTTCGTCGGGTAAGTTAATGCCAACTTACTACACTAGAGCTGTACAATGCCTAAGAGAACTGCTATTGATGCATATCAGTTACCTCTAGACCGCAGCTACACAAACTATGGGAATGCACATTCTTGTCCTTGCTCCCTACCTTTTAATAAACCTGTGACCTACCATTTTCTATGTGGTAAACTGTACTTCATAAACTTATTAATGGTACTGTTAATGGTATCATCTTCCTAGGATGACCGGATTTGGATTGATGCTACTTGCTCTCCAGGATGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540863" ref_strand="+" ref_description="SGN-E540863 [TUS-61-F19](-)">
      <seq>aaagatgaggatgaacttggcacccctcaggattctcgtgatcagacagggagatctctctttcacatgagaaaccacatgcagatggttccacagagaagtcaaatgatgatgctgaaagatcagattctcatgggagtgtaagagatgatgcagacagtcattcaactgatcaaggcgactctggaagtagctcggctgccaaatctgatgaagaattatccgacgatgagctacttagcacgtggaaacaacgagcagggaagtcggctggagggaagtaaaccagcagaaaggctatcatgtgaatgactgatgatttgtagcgatgcagcatcctggagagcaagtagcatcaatccaaataccgtcatcctaggaagatgataccattaacagtaacattaataagtttatgaagtacagtttaccacatagaaaatggtaggtcacaggtttattaaaaggtagggagcaaggacaagaatgtgcattcccatagtttgtgtagctgcggtctagaggtaactgatatgcatcaatagcagttctcttaggcattgtacagctctagtgtagtaagttggcattaacttacccgacgaaccgatcctgtgttgcagctcggtttttgttgtagtcttgtgtcttcattttgtatattttgtttgtttagattagtaacagaagtgcgtctgttgtagttcctccctccttcatatgatccgcggattcttgtgaactgtagatttgtaagcattttgtggtgtatggaaccagtaacattagcacccttttcacttcttttttgcttctaattctcaatatttgtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="153622" stop="152102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="153322" g_stop="153083" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="153082" i_stop="152998" i_length="85">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152997" g_stop="152405" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="832" r_length="593" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="152404" i_stop="152290" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.388" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="152289" g_stop="152278" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="844" r_length="12" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E540863" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="153322" e_stop="153083"/>
          <exon e_start="152997" e_stop="152405"/>
          <exon e_start="152289" e_stop="152278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTTGTAATGCCTATTCTTATGCACTATTTATTGGGACGTATATTTCTTGATGAATCATAATTTAGTAACAAATTATTGCCTTACGCAGAGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCGACGAACCGATCCTGTGTTGCAGCTCGGTTTTTGTTGTAGTCTTGTGTCTTCATTTTGTATATTTTGTTTGTTTAGATTAGTAACAGAAGTGCGTCTGTTGTAGTTCCTCCCTCCTTCATATGATCCGCGGATTCTTGTGAACTGTAGATTTGTAAGCATTTTGTGGTGTATGGAACCAGTAACATTAGCACCCTTTTCACTTCTTTTTTGCTTCTAATTCTCAATATTTGTGAATGAGGTGTTCTCTACTTGAACTATTAGATATTCACTTTTTCTATTTGAACTATGATCAACTATTTATCAAAAACACGCATCAATTATGAGTCGTGTTTCCACCATTATGTAGGAAAAGAGAAAA</genome_strand>
        <mrna_strand>AAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGT-GATCAGACAGGGAGATCTCTCTTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTT.....................................................................................AGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCGACGAACCGATCCTGTGTTGCAGCTCGGTTTTTGTTGTAGTCTTGTGTCTTCATTTTGTATATTTTGTTTGTTTAGATTAGTAACAGAAGTGCGTCTGTTGTAGTTCCTCCCTCCTTCATATGATCCGCGGATTCTTGTGAACTGTAGATTTGTAAGCATTTTGTGGTGTATGGAACCAGTAACATTAGCACCCTTTTCACTTCTTTTTTGCTTCTAATTCTCAATATTTGT...................................................................................................................GAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436351" ref_strand="-" ref_description="SGN-E436351 [STM-62-J20]">
      <seq>tgcagatggatctacagagaagttgaatgatgttgctgaaagatcagattctcatgggagtgtaagagatgatgcagacagtcattcaactgatcaaggcgactctgaaagtagctctgctactaaatctgatgaagaattatccgacgatgagctacttagcacgtggaaacaacgagcagggaagtcggctggagggaagtaaaccagcagaaaggccatcatatgatcatgactactgatttttagagatgcagcatcctggagagcatgtaggatcaagccgaataccgtcatcctaagaagatgataccattaacagtgacattaataagtttatgaagtacagtttaccacatagaaaatggtagggcacaggtttattaaaaggtagggagcaaggacaagaatgtgcattcccacagtttgtgtagctgcggtctagaggcaactgatatgagtcaatagcagttctcttaggcattgtacagctctagtgtagtaagttggcattaacttacccaactaaccgatcctgtgttgcagctcggttattgttgtagtcttgtgtcttcattttgtatattttgttgtttagagtagttacagaagtgcgtctgttgtagttcctccctcctttataagatccgtggattcttgtaaactgtagatttgtaagcatttgtggtgcatggaatcagtaacattagcacgcttttcacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="153542" stop="152134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="153242" g_stop="153083" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="153082" i_stop="152998" i_length="85">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152997" g_stop="152435" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="723" r_length="563" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="152434" i_stop="152290" i_length="145">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.388" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="152289" g_stop="152278" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="735" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E436351" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436351" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="153242" e_stop="153083"/>
          <exon e_start="152997" e_stop="152435"/>
          <exon e_start="152289" e_stop="152278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTTGTAATGCCTATTCTTATGCACTATTTATTGGGACGTATATTTCTTGATGAATCATAATTTAGTAACAAATTATTGCCTTACGCAGAGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGA--ATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCGACGAACCGATCCTGTGTTGCAGCTCGGTTTTTGTTGTAGTCTTGTGTCTTCATTTTGTATATTTTGTTTGTTTAGATTAGTAACAGAAGTGCGTCTGTTGTAGTTCCTCCCTCCTTCATATGATCCGCGGATTCTTGTGAACTGTAGATTTGTAAGCATTTTGTGGTGTATGGAACCAGTAACATTAGCACCCTTTTCACTTCTTTTTTGCTTCTAATTCTCAATATTTGTGAATGAGGTGTTCTCTACTTGAACTATTAGATATTCACTTTTTCTATTTGAACTATGATCAACTATTTATCAAAAACACGCATCAATTATGAGTCGTGTTTCCACCATTATGTAGGAAAAGAGAAAA</genome_strand>
        <mrna_strand>TGCAGATGGATCTACAGAGAAGTTGAATGATGTTGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGAAAGTAGCTCTGCTACTAAATCTGATGAAGAATTATCCGACGATGAGCTACTT.....................................................................................AGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCCATCATATGATCATGACTACTGATTTTTAGAGATGCAGCATCCTGGAGAGCATGTAGGATCAAGCCGAATACCGTCATCCTAAGAAGATGATACCATTAACAGTGACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGGCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCACAGTTTGTGTAGCTGCGGTCTAGAGGCAACTGATATGAGTCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCAACTAACCGATCCTGTGTTGCAGCTCGGTTATTGTTGTAGTCTTGTGTCTTCATTTTGTATATTTTG-TTGTTTAGAGTAGTTACAGAAGTGCGTCTGTTGTAGTTCCTCCCTCCTTTATAAGATCCGTGGATTCTTGTAAACTGTAGATTTGTAAGCA-TTTGTGGTGCATGGAATCAGTAACATTAGCACGCTTTTCACT.................................................................................................................................................TAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594615" ref_strand="+" ref_description="SGN-E594615 [37871]">
      <seq>ctgtgttgcagctcggttattgttgtagtcttgtgtcttcattttgtatattttgttgtttagagtagttacagaagtgcgtctgttgtagttcctccctcctttataagatccgtggattcttgtaaactgtagatttgtaagcatttgtggtgcatggaatcagtaacattagcacgcttttcacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="152924" stop="152134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="152624" g_stop="152435" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="152434" i_stop="152290" i_length="145">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.388" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152289" g_stop="152279" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="199" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E594615" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="152624" e_stop="152435"/>
          <exon e_start="152289" e_stop="152279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTTGCAGCTCGGTTTTTGTTGTAGTCTTGTGTCTTCATTTTGTATATTTTGTTTGTTTAGATTAGTAACAGAAGTGCGTCTGTTGTAGTTCCTCCCTCCTTCATATGATCCGCGGATTCTTGTGAACTGTAGATTTGTAAGCATTTTGTGGTGTATGGAACCAGTAACATTAGCACCCTTTTCACTTCTTTTTTGCTTCTAATTCTCAATATTTGTGAATGAGGTGTTCTCTACTTGAACTATTAGATATTCACTTTTTCTATTTGAACTATGATCAACTATTTATCAAAAACACGCATCAATTATGAGTCGTGTTTCCACCATTATGTAGGAAAAGAGAAA</genome_strand>
        <mrna_strand>CTGTGTTGCAGCTCGGTTATTGTTGTAGTCTTGTGTCTTCATTTTGTATATTTTG-TTGTTTAGAGTAGTTACAGAAGTGCGTCTGTTGTAGTTCCTCCCTCCTTTATAAGATCCGTGGATTCTTGTAAACTGTAGATTTGTAAGCA-TTTGTGGTGCATGGAATCAGTAACATTAGCACGCTTTTCACT.................................................................................................................................................TAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554987" ref_strand="+" ref_description="SGN-E554987 [cTSC-6-A8]">
      <seq>ccgttgataacctcaaagtccaaggcggacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgagttcagcttgtctgaacatgaactgtctgacaaggatgacatagcatactttgatgggaaacccggggctgatgctgatagattgagtggtatggaggagtctgaagaagaagaatgttccgtggaaaataaagatgaggatgaacttggcacccctcaggattctcgtggatcagacagggagatctcttcttcacatgagaaaccacatgcagatggttccacagagaagtcaaatgatgatgctgaaagatcagattctcatgggagtgtaagagatgatgcagacagtcattcaactgatcaaggcgactctggaagtagctcggctgccaaatctgatgaagaattatccgacgatgagctacttagcacgtggaaacaacgagcagggaagtcggctggagggaagtaaaccagcagaaaggctatcatgtgaatgactgatgatttgtagcgatgcagcatcctggagagcaagtagcatcaatccaaataccgtcatcctaggaagatgataccattaacagtaacattaataagtttatgaagtacagtttaccacatagaaaatggtaggtcacaggtttattaaaaggtagggagcaaggacaagaatgtgcattcccatagtttgtgtagctgcggtctagaggtaactgatatgcatcaatagcagttctcttaggcattgtacagctctagtgtagtaagttggcattaacttacccgacgaaccgatcctgtgttgcagctcggtttttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="155444" stop="152299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155144" g_stop="155102" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155101" i_stop="153490" i_length="1612">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="153489" g_stop="153083" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="450" r_length="407" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="153082" i_stop="152998" i_length="85">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="152997" g_stop="152599" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="849" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E554987" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155144" e_stop="155102"/>
          <exon e_start="153489" e_stop="153083"/>
          <exon e_start="152997" e_stop="152599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTTGTAATGCCTATTCTTATGCACTATTTATTGGGACGTATATTTCTTGATGAATCATAATTTAGTAACAAATTATTGCCTTACGCAGAGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCGACGAACCGATCCTGTGTTGCAGCTCGGTTTTTGTTGT</genome_strand>
        <mrna_strand>CCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTTCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTT.....................................................................................AGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCGACGAACCGATCCTGTGTTGCAGCTCGGTTTTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556559" ref_strand="+" ref_description="SGN-E556559 [cTSD-3-N5]">
      <seq>ccgttgataacctcaaagtccaaggcggacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgagttcagcttgtctgaacatgaactgtctgacaaggatgacatagcatactttgatgggaaacccggggctgatgctgatagattgagtggtatggaggagtctgaagaagaagaatgttccgtggaaaataaagatgaggatgaacttggcacccctcaggattctcgtggatcagacagggagatctcttcttcacatgagaaaccacatgcagatggttccacagagaagtcaaatgatgatgctgaaagatcagattctcatgggagtgtaagagatgatgcagacagtcattcaactgatcaaggcgactctggaagtagctcggctgccaaatctgatgaagaattatccgacgatgagctacttagcacgtggaaacaacgagcagggaagtcggctggagggaagtaaaccagcagaaaggctatcatgtgaatgactgatgatttgtagcgatgcagcatcctggagagcaagtagcatcaatccaaataccgtcatcctaggaagatgataccattaacagtaacattaataagtttatgaagtacagtttaccacatagaaaatggtaggtcacaggtttattaaaaggtagggagcaaggacaagaatgtgcattcccatagtttgtgtagctgcggtctagaggtaactgatatgcatcaatagcagttctcttaagcattgtacagctctagtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="155444" stop="152359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155144" g_stop="155102" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155101" i_stop="153490" i_length="1612">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="153489" g_stop="153083" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="450" r_length="407" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="153082" i_stop="152998" i_length="85">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="152997" g_stop="152659" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="789" r_length="339" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E556559" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155144" e_stop="155102"/>
          <exon e_start="153489" e_stop="153083"/>
          <exon e_start="152997" e_stop="152659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTTGTAATGCCTATTCTTATGCACTATTTATTGGGACGTATATTTCTTGATGAATCATAATTTAGTAACAAATTATTGCCTTACGCAGAGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTA</genome_strand>
        <mrna_strand>CCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTTCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTT.....................................................................................AGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAAGCATTGTACAGCTCTAGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329452" ref_strand="+" ref_description="SGN-E329452 [cTOD-11-C6]">
      <seq>aagaatgtcctttggaaaataaagatgaggatgaacttggcagccctcatgattctcgtggatcagacagggagatctcttcttcacatgagaaaccacatgcagatggttccacagagaagtcaaatgatgatgctgaaagatcagattctcatgggagtgtaagagatgatgcagacagtcattcaactgatcaaggcgactctggaagtagctcggctgccaaatctgatgaagaattatccgacgatgagctacttagcacgtggaaacaacgagcagggaagtcggctggagggaagtaaaccagcagaaaggctatcatgtgaatgactgatgatttgtagcgatgcagcatcctggagagcaagtagcatcaatccaaataccgtcatcctaggaagatgataccattaacagtaacattaataagtttatgaagtacagtttaccacatagaaaatggtaggtcacaggtttattaaaaggtagggagcaaggacaagaatgtgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="153642" stop="152442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="153342" g_stop="153083" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="153082" i_stop="152998" i_length="85">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="152997" g_stop="152742" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="516" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E329452" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="153342" e_stop="153083"/>
          <exon e_start="152997" e_stop="152742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTTGTAATGCCTATTCTTATGCACTATTTATTGGGACGTATATTTCTTGATGAATCATAATTTAGTAACAAATTATTGCCTTACGCAGAGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATT</genome_strand>
        <mrna_strand>AAGAATGTCCTTTGGAAAATAAAGATGAGGATGAACTTGGCAGCCCTCATGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTT.....................................................................................AGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708832" ref_strand="+" ref_description="SGN-E708832 [FA36DE12]">
      <seq>ccgtttaagaaggagaccgataagatgtctccattatcgccagtacgagggaagagaactccaaggaagaatttgaagtatggacaaaaaggtccatcaaaatcttctttgaacagaagaagcctgcttttaggcaagccgttgataacctcaaagtccaaggcggacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgagttcagcttgtctgaacatgaactgactgacaaggatgacataccatactttgatgggaaacccggggctgatgctgatagattgagtggtatggaggagtctgaagaagaagaatgtcccgtggaaaataaagatgaggatgaacttggcacccctcaggattctcgtggatcatacagggagatctcttcttcacatgagaaaccacatgcagatggttccacagacaagtcaaatgatgatgctgaaagatcacattctcatgggagtgtaagagatgatgcagacagtcattcaactgatcaaggcgactctggaagtagctcggctgccaaatctgatgaagaattatccgacgatgagctacttagcacgtggaaacaacgagcatggaagtcagctggagggaagtaaaccagcagaaaggctatcatgtgaatgactgatgatttgtagcgatgcagcatcctggagagcaagtatcatcaatccaaataccgtcatcctaggaagatgataccattaacagtatcattaataagtttatgaagtacagtttaccacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="155658" stop="152501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155364" g_stop="155339" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.808"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155338" i_stop="155257" i_length="82">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155256" g_stop="155102" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="181" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155101" i_stop="153490" i_length="1612">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="153489" g_stop="153083" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="588" r_length="407" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="153082" i_stop="152998" i_length="85">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="152997" g_stop="152801" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="785" r_length="197" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E708832" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155364" e_stop="155339"/>
          <exon e_start="155256" e_stop="155102"/>
          <exon e_start="153489" e_stop="153083"/>
          <exon e_start="152997" e_stop="152801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAAAGAAGGAGACCGATAAGATGTGAGCTTGATTCTTTAACTTGATTGCACATAATTTTTTTGTGTATTTCCTATTTGCCTTATGCGTGTTGTTTTACTGACAGGTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTTGTAATGCCTATTCTTATGCACTATTTATTGGGACGTATATTTCTTGATGAATCATAATTTAGTAACAAATTATTGCCTTACGCAGAGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACAT</genome_strand>
        <mrna_strand>CCGTTTAAGAAGGAGACCGATAAGAT..................................................................................GTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAACAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGACTGACAAGGATGACATACCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCATACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGACAAGTCAAATGATGATGCTGAAAGATCACATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTT.....................................................................................AGCACGTGGAAACAACGAGCATGGAAGTCAGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTATCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTATCATTAATAAGTTTATGAAGTACAGTTTACCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540865" ref_strand="+" ref_description="SGN-E540865 [TUS-61-F19]">
      <seq>tggaaaaggagtgttgggagcttgttggtggtgtgcagaaacctgtgaagggttcaaattccaaaaagggttcaggctccaagaaagaatctggagagaggaaaaaaagaactcttgctgcctccaggcaaaagaaggagaccgataagatgtctccattatcgccagtacgagggaagagaactccaaggaagaatttgaagtatggacaaaaaggtccatcaaaatcttctttgagcagaagaagcctgcttttaggcaagccgttgataacctcaaagtccaaggcggacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgagttcagcttgtctgaacatgaactgtctgacaaggatgacatagcatactttgatgggaaacccggggctgatgctgatagattgagtggtatggaggagtctgaagaagaagaatgtcccgtggaaaataaagatgaggatgaacttggcacccctcaggattctcgtggatcagacagggagatctcttcttcacatgagaaaccacatgcagatggttccacagagaagtcaaatgatgatgctgaaagatcagattctcatgggagtgtaagagatgatgcagacagtcattcaactgatcaaggcgactctggaagtagctcggctggcaaatctgatgaagattatccgacgatgagctacttagcacgtggaaaacacgagcagggaagtcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="156377" stop="152666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156077" g_stop="156028" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156027" i_stop="155919" i_length="109">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155918" g_stop="155881" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="88" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155880" i_stop="155402" i_length="479">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155401" g_stop="155339" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="151" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="155338" i_stop="155257" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="155256" g_stop="155102" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="306" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="155101" i_stop="153490" i_length="1612">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="153489" g_stop="153083" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="712" r_length="406" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="153082" i_stop="152998" i_length="85">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="152997" g_stop="152966" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="744" r_length="32" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E540865" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156077" e_stop="156028"/>
          <exon e_start="155918" e_stop="155881"/>
          <exon e_start="155401" e_stop="155339"/>
          <exon e_start="155256" e_stop="155102"/>
          <exon e_start="153489" e_stop="153083"/>
          <exon e_start="152997" e_stop="152966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAGGTATGCTTTTCCTTATAGTGTTCATCCTCGCAAACTTTTTATTTTTATTCTTGGTATGAACCCATGCATTTTGGTTTTACTGATTTGTATATTTGAACATTATTTACAGGGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGAGTAAGTGATTCATCTGCTTTAGTAGTCGCTGTAATTTTAAAAATTATTTTTGTGATTATCACAATTCCTTTTCTTCTTTTGATAAGTTCTGGGGATTCTGTTTTATATGGTACTTAAAATTGAGGAATTGCATTCTTGAGCGTTTGAATTGTGTTGATGGTACTTCTCTTGTTAAATGCTCTGGATATCATACCTCAGGCTGCATAGTTCTTCTCCCCATTGATGTGGATGGGTAATGGGTTGGTAAATAATGATTATTTCTGCCTTTATTGTTCAGACTATTATCAAGTGTTGATGACTAGCTTAATTCTTTTCTAATCTTGATTTTTTGACGCCTTTCACGAAAGAACTGTTAACTTTGCATAATGTGGCTCCTTTTTAAGTTTCATGCATTATGATGCTACCTGAGCCTTGTGTATTAGCATCATAGACGAATTATGAGTAGCTTTAACCTCCCCGTCTTCATTTAATGACTGCAGATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGATGTGAGCTTGATTCTTTAACTTGATTGCACATAATTTTTTTGTGTATTTCCTATTTGCCTTATGCGTGTTGTTTTACTGACAGGTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTTGTAATGCCTATTCTTATGCACTATTTATTGGGACGTATATTTCTTGATGAATCATAATTTAGTAACAAATTATTGCCTTACGCAGAGCACGTGGAAACAACGAGCAGGGAAGTCGGC</genome_strand>
        <mrna_strand>TGGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAG.............................................................................................................GGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGAT..................................................................................GTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGGCAAATCTGATGAAG-ATTATCCGACGATGAGCTACTT.....................................................................................AGCACGTGGAAAACACGAGCAGGGAAGTCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436350" ref_strand="+" ref_description="SGN-E436350 [STM-62-J20]">
      <seq>gtcaagtcttttgacactcagaaaagcaaacacgttgtgctatatgatgatggtgatgtagaagtcctccgattggaaaaggagtgttgggagcttgttggtggtgtgcagaaacctgcgaagggttcaaattccaaaaagggttcaggctacaagaaagaatctggagagaggaaaaataggactcttgctgcctccaggcaaaagaaggagacagataagatgtctccattatcgccagtacgagggaagagaactccaaggaagaacttaaagtatggacaaaaaggtccatcaaaatcttctttgagcagaagaagcctgcttttaggcaagccgttgacaacctcaaagtccaaggcagacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgggttcagtttgtctgaacatgaactgtctgacaaggatgacatatcatactctgatgggaaaccaggggctgatgctgatangttgagtggtatggaggagtctgaagaagaagaatgtcccatggaaaataaagacgaggatgaacctggcacccctcaggattctcgtggatcagacagggagatctcttcttcacatgagaaaccacatgcagatggatctacagagaagttgaatgatgttgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="156576" stop="152903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156276" g_stop="156241" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156240" i_stop="156115" i_length="126">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156114" g_stop="156028" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="123" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="156027" i_stop="155919" i_length="109">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155918" g_stop="155881" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="161" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="155880" i_stop="155402" i_length="479">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.684" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="155401" g_stop="155339" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="224" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="155338" i_stop="155257" i_length="82">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="155256" g_stop="155102" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="379" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="155101" i_stop="153490" i_length="1612">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="153489" g_stop="153203" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="666" r_length="287" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E436350" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156276" e_stop="156241"/>
          <exon e_start="156114" e_stop="156028"/>
          <exon e_start="155918" e_stop="155881"/>
          <exon e_start="155401" e_stop="155339"/>
          <exon e_start="155256" e_stop="155102"/>
          <exon e_start="153489" e_stop="153203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGTCTTTTGACACTCATAAAAGCAAACACGTTGTAAGCTGCATTTCTAGTACAACAATTATTTATTTTTTATTACTAAAGTTGATGAACTTCAGCAATTTTTTAATATGTCAACTTCTATTGATTCTTGGTTATGGTTTGTTATCAATTGTATCAAAGGTGCTATATGATGATGGTGATGTAGAAGTCCTGCGATTGGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAGGTATGCTTTTCCTTATAGTGTTCATCCTCGCAAACTTTTTATTTTTATTCTTGGTATGAACCCATGCATTTTGGTTTTACTGATTTGTATATTTGAACATTATTTACAGGGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGAGTAAGTGATTCATCTGCTTTAGTAGTCGCTGTAATTTTAAAAATTATTTTTGTGATTATCACAATTCCTTTTCTTCTTTTGATAAGTTCTGGGGATTCTGTTTTATATGGTACTTAAAATTGAGGAATTGCATTCTTGAGCGTTTGAATTGTGTTGATGGTACTTCTCTTGTTAAATGCTCTGGATATCATACCTCAGGCTGCATAGTTCTTCTCCCCATTGATGTGGATGGGTAATGGGTTGGTAAATAATGATTATTTCTGCCTTTATTGTTCAGACTATTATCAAGTGTTGATGACTAGCTTAATTCTTTTCTAATCTTGATTTTTTGACGCCTTTCACGAAAGAACTGTTAACTTTGCATAATGTGGCTCCTTTTTAAGTTTCATGCATTATGATGCTACCTGAGCCTTGTGTATTAGCATCATAGACGAATTATGAGTAGCTTTAACCTCCCCGTCTTCATTTAATGACTGCAGATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGATGTGAGCTTGATTCTTTAACTTGATTGCACATAATTTTTTTGTGTATTTCCTATTTGCCTTATGCGTGTTGTTTTACTGACAGGTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAA</genome_strand>
        <mrna_strand>GTCAAGTCTTTTGACACTCAGAAAAGCAAACACGTT..............................................................................................................................GTGCTATATGATGATGGTGATGTAGAAGTCCTCCGATTGGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGCGAAG.............................................................................................................GGTTCAAATTCCAAAAAGGGTTCAGGCTACAAGAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGAGAGAGGAAAAATAGGACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACAGATAAGAT..................................................................................GTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAACTTAAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGACAACCTCAAAGTCCAAGGCAGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGGGTTCAGTTTGTCTGAACATGAACTGTCTGACAAGGATGACATATCATACTCTGATGGGAAACCAGGGGCTGATGCTGATANGTTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCATGGAAAATAAAGACGAGGATGAACCTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGATCTACAGAGAAGTTGAATGATGTTGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251176" ref_strand="+" ref_description="SGN-E251176 [cLEG-10-J3]">
      <seq>ggaaaaggagtgttgggatcttgttggtggtgtgcanaaacctgtgaagggtgcaaattccaaaaagggttcaggctccaagaaagaatctggagagaggaaaaaagaactcttgctgcctccaggcaaaagaaggagaccgataagatgtctccattatcgccagtacgagggaagagaactccaaggaagaatttgaagtatggacaaaaaggtccatcaaaatcttctttgagcagaagaagcctgcttttaggcaagccgttgataacctcaaagtccaaggcggacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgagttcagcttgtctgaacatgaactgtctgacaaggatgacatagcatactttgatgggaaacccggggctgatgctgatagattgagtggtatggaggagtctgaagaagaagaatgtcccgtggaaaataaagatgaggatgaacttggcacccctcatgattctcgtggatcagacagggagatctcttcttcacatgagaaaccacatgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="156376" stop="152937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156076" g_stop="156028" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156027" i_stop="155919" i_length="109">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155918" g_stop="155881" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="87" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155880" i_stop="155402" i_length="479">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.684" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155401" g_stop="155339" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="149" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="155338" i_stop="155257" i_length="82">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="155256" g_stop="155102" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="304" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="155101" i_stop="153490" i_length="1612">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="153489" g_stop="153237" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="557" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E251176" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156076" e_stop="156028"/>
          <exon e_start="155918" e_stop="155881"/>
          <exon e_start="155401" e_stop="155339"/>
          <exon e_start="155256" e_stop="155102"/>
          <exon e_start="153489" e_stop="153237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAGGTATGCTTTTCCTTATAGTGTTCATCCTCGCAAACTTTTTATTTTTATTCTTGGTATGAACCCATGCATTTTGGTTTTACTGATTTGTATATTTGAACATTATTTACAGGGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGAGTAAGTGATTCATCTGCTTTAGTAGTCGCTGTAATTTTAAAAATTATTTTTGTGATTATCACAATTCCTTTTCTTCTTTTGATAAGTTCTGGGGATTCTGTTTTATATGGTACTTAAAATTGAGGAATTGCATTCTTGAGCGTTTGAATTGTGTTGATGGTACTTCTCTTGTTAAATGCTCTGGATATCATACCTCAGGCTGCATAGTTCTTCTCCCCATTGATGTGGATGGGTAATGGGTTGGTAAATAATGATTATTTCTGCCTTTATTGTTCAGACTATTATCAAGTGTTGATGACTAGCTTAATTCTTTTCTAATCTTGATTTTTTGACGCCTTTCACGAAAGAACTGTTAACTTTGCATAATGTGGCTCCTTTTTAAGTTTCATGCATTATGATGCTACCTGAGCCTTGTGTATTAGCATCATAGACGAATTATGAGTAGCTTTAACCTCCCCGTCTTCATTTAATGACTGCAGATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGATGTGAGCTTGATTCTTTAACTTGATTGCACATAATTTTTTTGTGTATTTCCTATTTGCCTTATGCGTGTTGTTTTACTGACAGGTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGA</genome_strand>
        <mrna_strand>GGAAAAGGAGTGTTGGGATCTTGTTGGTGGTGTGCANAAACCTGTGAAG.............................................................................................................GGTGCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGAGAGAGG-AAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGAT..................................................................................GTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCATGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460724" ref_strand="+" ref_description="SGN-E460724 [cPRO-32-M13]">
      <seq>gtcaagtcttttgacactcagaaaagcaaacacgttgtgctatatgatgatggtgatgtagaagtcctccgattggaaaaggagtgttgggagcttgttggtggtgtgcagaaacctgcgaagggttcaaattccaaaaagggttcaggctacaagaaagaatctggagagaggaaaaataggactcttgctgcctccaggcaaaagaaggagacagataagatgtctccattatcgccagtacgagggaagagaactccaaggaagaacttaaagtatggacaaaaaggtccatcaaaatcttctttgagcagaagaagcctgcttttaggcaagccgttgacaacctcaaagtccaaggcagacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgggttcagtttgtctgaacatgaactgtctgacaaggatgacatatcatactctgatgggaaaccaggggctgatgctgataggttgagtggtatggaggagtctgaagaagaagaatgtcccatgggaaataaagacgaggatgaacctggcacccctcaagattctcgtggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="156576" stop="152979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156276" g_stop="156241" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156240" i_stop="156115" i_length="126">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156114" g_stop="156028" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="123" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="156027" i_stop="155919" i_length="109">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155918" g_stop="155881" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="161" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="155880" i_stop="155402" i_length="479">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.684" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="155401" g_stop="155339" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="224" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="155338" i_stop="155257" i_length="82">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="155256" g_stop="155102" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="379" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="155101" i_stop="153490" i_length="1612">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.929" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="153489" g_stop="153279" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="590" r_length="211" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E460724" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156276" e_stop="156241"/>
          <exon e_start="156114" e_stop="156028"/>
          <exon e_start="155918" e_stop="155881"/>
          <exon e_start="155401" e_stop="155339"/>
          <exon e_start="155256" e_stop="155102"/>
          <exon e_start="153489" e_stop="153279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGTCTTTTGACACTCATAAAAGCAAACACGTTGTAAGCTGCATTTCTAGTACAACAATTATTTATTTTTTATTACTAAAGTTGATGAACTTCAGCAATTTTTTAATATGTCAACTTCTATTGATTCTTGGTTATGGTTTGTTATCAATTGTATCAAAGGTGCTATATGATGATGGTGATGTAGAAGTCCTGCGATTGGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAGGTATGCTTTTCCTTATAGTGTTCATCCTCGCAAACTTTTTATTTTTATTCTTGGTATGAACCCATGCATTTTGGTTTTACTGATTTGTATATTTGAACATTATTTACAGGGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGAGTAAGTGATTCATCTGCTTTAGTAGTCGCTGTAATTTTAAAAATTATTTTTGTGATTATCACAATTCCTTTTCTTCTTTTGATAAGTTCTGGGGATTCTGTTTTATATGGTACTTAAAATTGAGGAATTGCATTCTTGAGCGTTTGAATTGTGTTGATGGTACTTCTCTTGTTAAATGCTCTGGATATCATACCTCAGGCTGCATAGTTCTTCTCCCCATTGATGTGGATGGGTAATGGGTTGGTAAATAATGATTATTTCTGCCTTTATTGTTCAGACTATTATCAAGTGTTGATGACTAGCTTAATTCTTTTCTAATCTTGATTTTTTGACGCCTTTCACGAAAGAACTGTTAACTTTGCATAATGTGGCTCCTTTTTAAGTTTCATGCATTATGATGCTACCTGAGCCTTGTGTATTAGCATCATAGACGAATTATGAGTAGCTTTAACCTCCCCGTCTTCATTTAATGACTGCAGATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGATGTGAGCTTGATTCTTTAACTTGATTGCACATAATTTTTTTGTGTATTTCCTATTTGCCTTATGCGTGTTGTTTTACTGACAGGTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATC</genome_strand>
        <mrna_strand>GTCAAGTCTTTTGACACTCAGAAAAGCAAACACGTT..............................................................................................................................GTGCTATATGATGATGGTGATGTAGAAGTCCTCCGATTGGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGCGAAG.............................................................................................................GGTTCAAATTCCAAAAAGGGTTCAGGCTACAAGAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGAGAGAGGAAAAATAGGACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACAGATAAGAT..................................................................................GTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAACTTAAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGACAACCTCAAAGTCCAAGGCAGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGGGTTCAGTTTGTCTGAACATGAACTGTCTGACAAGGATGACATATCATACTCTGATGGGAAACCAGGGGCTGATGCTGATAGGTTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCATGGGAAATAAAGACGAGGATGAACCTGGCACCCCTCAAGATTCTCGTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289984" ref_strand="+" ref_description="SGN-E289984 [cLET-9-L14]">
      <seq>ggaaaatgagtgttgggagcttgttggtggtgtgcagaaacctgtgaagggttcaaattccaaaaagggttcaggctccaagaaagaatctggagagaggaaaaaaagaactcttgctgcctccaggcaaaagaaggagaccgataagatgtctccattatcgccagtacgagggaagagaactccaaggaagaatttgaagtatggacaaaaaggtccatcaaaatcttctttgagcagaagaagcctgcttttaggcaagccgttgataacctcaaagtccaaggcggacaatttaagctcaggtgaatcagaaagtgagcagaaagaaagcacgcatgagttcagcttgtctgaacatgaactgtctgacaaggatgacatagcatactttgatgggaaacccggggctgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="156376" stop="153076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156076" g_stop="156028" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156027" i_stop="155919" i_length="109">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155918" g_stop="155881" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="87" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155880" i_stop="155402" i_length="479">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155401" g_stop="155339" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="150" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="155338" i_stop="155257" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="155256" g_stop="155102" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="305" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="155101" i_stop="153490" i_length="1612">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="153489" g_stop="153376" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="419" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-E289984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156076" e_stop="156028"/>
          <exon e_start="155918" e_stop="155881"/>
          <exon e_start="155401" e_stop="155339"/>
          <exon e_start="155256" e_stop="155102"/>
          <exon e_start="153489" e_stop="153376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAGGTATGCTTTTCCTTATAGTGTTCATCCTCGCAAACTTTTTATTTTTATTCTTGGTATGAACCCATGCATTTTGGTTTTACTGATTTGTATATTTGAACATTATTTACAGGGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGAGTAAGTGATTCATCTGCTTTAGTAGTCGCTGTAATTTTAAAAATTATTTTTGTGATTATCACAATTCCTTTTCTTCTTTTGATAAGTTCTGGGGATTCTGTTTTATATGGTACTTAAAATTGAGGAATTGCATTCTTGAGCGTTTGAATTGTGTTGATGGTACTTCTCTTGTTAAATGCTCTGGATATCATACCTCAGGCTGCATAGTTCTTCTCCCCATTGATGTGGATGGGTAATGGGTTGGTAAATAATGATTATTTCTGCCTTTATTGTTCAGACTATTATCAAGTGTTGATGACTAGCTTAATTCTTTTCTAATCTTGATTTTTTGACGCCTTTCACGAAAGAACTGTTAACTTTGCATAATGTGGCTCCTTTTTAAGTTTCATGCATTATGATGCTACCTGAGCCTTGTGTATTAGCATCATAGACGAATTATGAGTAGCTTTAACCTCCCCGTCTTCATTTAATGACTGCAGATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGATGTGAGCTTGATTCTTTAACTTGATTGCACATAATTTTTTTGTGTATTTCCTATTTGCCTTATGCGTGTTGTTTTACTGACAGGTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAGGTGAGGTTCTTGTGATTCTCTTTTTCTTTCGATTTTTTTATTTATTATTCTTGTTGGCATTCTAGTTAATTGTATCATTTGTTGCTTGGTATATTCTGTCATGCAAAGGTCAACAAATGAAAGGATAGAGGGTCTGGAAGTCATTTATGCACATGGAGGGGAGGGTATGCTTAGGTGTTTAAGAGGGTGGAGTCTATCAGGTGGCTGATGAGGGTGGGAAAGGAGGCAATAGTTCGGGTTTCAAAGTTATTTTCTGATGGAGGGGATAATTGGATATTTCCTCAGGTGTAAAGTAAAAAAGAATGAGGAACTATCAGAGTGATGGAATGTTGAGTGGGACATTTGATGATTTAAAATGCAGCAATGTCATCTCTTTCTTTAAAGAATGAACAATAACCTCACTTGGATCTCGAAGTTCCTTGAAACTTAAGAGTACTTCTCTAAGTTAATTTTTAAGCCAAAGTTATTACCCTTTTTTTAGCTCTTGTAAATTGACTGTAGAAAGTGGAAAATTTCTTTTCGTTGTGGTTTTTGGATATTACATTTTGAAGGAGTGGGATACTTTAAGTGGCAATACATCTTTCAAGATAGGGGATGGGAGTAGGGTTAGTTTTGAGGGGCATGACTGGTGTAGAGACAACATTTGAGATCCACTTTCTCAAACATCTACGAAGGTTCATGCCAAAAAGAGATGACTGTCCAACATCTATGGATATTATAAGAGGGGAACATCTTTTTGGCATTTCCCCTTCCAGAAGCAACCTTCTGGACTGGAAGTTTGAGGAATCCAAAGCCTCCTTGAAATGCCTTTAAACAAGGCATACTTGCGTAGATGTAGGCTATGTAGTTTACCTAACATGGCCGAAATATGCACTGCATACACTGTCGGAGTCTCAGTTGTATGTATATATTGTGTATAGGTATGTAACTTTAATGTATAGCTATGTAGTTTTAATATAAAGTACAAACTTCTTACACACTGTGTACATATTTTGTAAACCAGATGGCCTAATGGTATTGGGCTGCAATTTTCTTTTTTAAGAAAACCATCATTTTAAAAAAAAATGAATCTTGGAAATGGGAGAGATCTGTATTGGACAAAATTACAACTTAGAAGTATCTTTCTGGTCGTAGTTTTTTTGCTTATTTCCCTTTTGGGACAGCTGTTTAGTACATTGTAGCCTTCTTTTGAGATAACATTGGATGATAGGTTAAAATTTTTCAAGTAATTGAAAATGTTAGATGACGATCTAATGTTTTATTGGTAAGTTTTATACGAAGAAATAGTAGACCCGAGTCTAACCTTCTCCGGAGTGATCTTCCGAAGTCTATATTTGCTTAATTTTATTAGTAGGGACAAAAATTAGATGTGTCCTAAAAAGGAGACATTTTTTAGGGATCAGGCAACAATTTGTGCTCTTGCCACGATTATCCAGAATTAGGAGTGGAATAAAAAACACTCTTATTTTCAATCTAGAGTATGAAAAGAGAGAACTTCCATTATGTCTTAGGTGTTGCAATAGTTTCTTAAGGTAGAATAATTTTGACAGTCTCCCTGTTATGCTATTCATGATCTCCCCTAGCTTTCTAATCTGGCATTTGGCTTTACTAGGTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTG</genome_strand>
        <mrna_strand>GGAAAATGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAG.............................................................................................................GGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGAT..................................................................................GTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>187</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3126" PGL_stop="2673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3126" e_stop="2943"/>
            <exon e_start="2749" e_stop="2673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="3126" e_stop="2943" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2942" i_stop="2750" i_length="193"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2749" e_stop="2673" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3126" stop="2943"/>
              <exon start="2749" stop="2692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3070" stop="2943"/>
              <exon start="2749" stop="2673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTATAGAAAGGTATTAACCAATCCACAACATTCTTTGGCTCTGCTCAAATTTCATTTGAGGAATAAAAAAAAATGGTGATGTGGGTATTTGGATATGGATCTCTAATTTGGAAGCCTGGGTTTAACTACGATGATCGTCTTTTCGGTTTTATCAAAGGCTATCGTCGTGTCTTTTATCAAG : GCAGTACTGATCATAGAGGGACACCAGAATTCCCAGGTAGAACAGTAACACTGGAGCCTGCTGAAGGAGAAATTTGT</gDNA_template>
            <first_frame> F  V  *  K  G  I  N  Q  S  T  T  F  F  G  S  A  Q  I  S  F  E  E  *  K  K  M  V  M  W  V  F  G  Y  G  S  L  I  W  K  P  G  F  N  Y  D  D  R  L  F  G  F  I  K  G  Y  R  R  V  F  Y  Q   : G  S  T  D  H  R  G  T  P  E  F  P  G  R  T  V  T  L  E  P  A  E  G  E  I  C </first_frame>
            <second_frame>  L  Y  R  K  V  L  T  N  P  Q  H  S  L  A  L  L  K  F  H  L  R  N  K  K  K  W  *  C  G  Y  L  D  M  D  L  *  F  G  S  L  G  L  T  T  M  I  V  F  S  V  L  S  K  A  I  V  V  S  F  I  K  :  A  V  L  I  I  E  G  H  Q  N  S  Q  V  E  Q  *  H  W  S  L  L  K  E  K  F   </second_frame>
            <third_frame>   C  I  E  R  Y  *  P  I  H  N  I  L  W  L  C  S  N  F  I  *  G  I  K  K  N  G  D  V  G  I  W  I  W  I  S  N  L  E  A  W  V  *  L  R  *  S  S  F  R  F  Y  Q  R  L  S  S  C  L  L  S  R :   Q  Y  *  S  *  R  D  T  R  I  P  R  *  N  S  N  T  G  A  C  *  R  R  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3057" stop="2943"/>
                    <exon start="2749" stop="2673"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMVMWVFGYGSLIWKPGFNYDDRLFGFIKGYRRVFYQGSTDHRGTPEFPGRTVTLEPAEGEIC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5403" PGL_stop="19476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5421" e_stop="5509"/>
            <exon e_start="8321" e_stop="8538"/>
            <exon e_start="9573" e_stop="9606"/>
            <exon e_start="11764" e_stop="11900"/>
            <exon e_start="14571" e_stop="14637"/>
            <exon e_start="16299" e_stop="16398"/>
            <exon e_start="16946" e_stop="17109"/>
            <exon e_start="18339" e_stop="18385"/>
            <exon e_start="18485" e_stop="18535"/>
            <exon e_start="18927" e_stop="19476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.743" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5421" e_stop="5509" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8321" e_stop="8538" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9573" e_stop="9606" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.893" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11764" e_stop="11900" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.982">
            <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14571" e_stop="14637" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16299" e_stop="16398" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.743" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16946" e_stop="17109" e_length="164"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17110" i_stop="18338" i_length="1229"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18339" e_stop="18385" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18485" e_stop="18535" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.898" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18536" i_stop="18926" i_length="391"/>
          </intron>
          <exon e_serial="10" e_score="0.929">
            <gDNA_exon_boundary e_start="18927" e_stop="19476" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5421" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5421" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5427" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5431" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5432" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5433" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5433" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5438" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5441" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5451" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11871" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11872" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11878" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11885" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14580" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16975" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16997" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18488" stop="18535"/>
              <exon start="18927" stop="19329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18983" stop="19476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411097" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG : TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG : GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG : GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG : GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG : GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG : GGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAG : CATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGG : GTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAG : AGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTATAAGAATAAGCAGGAGCGTCAATCTTGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCGGGATAACATGAATGGAAGATCAACACCAAATTGAGGCCATTTATGTTAGTGAACTCAACCTCATTCTCGAGTTGATTAACATCTCCATCCTTTTTACCTGTTGCTTTTTTGGTGAAGTGCACTCTTGCATCTGAATTGATCATCTTCCCCTCGACATGATTTGTACATTAAAGATCTAAAACTCAGGTTTGCAGTGTAATCTTAGG</gDNA_template>
            <first_frame> V  V  S  S  V  N  G  E  A  E  D  G  F  S  S  L  A  S  H  S  S  L  L  L  A  L  P  *  F  C :   G  T  C  C  R  S  *  L  *  R  T  *  G  C  *  A  M  S  I  R  G  F  *  D  *  S  F  I  S  C  L  K  F  R  L  I  S  G  H  I  Q  F  R  G  S  S  *  P  K  P  K  K  C  R  S  *  A  *  C  I  F  I  R  C  S  L  Y  I  F  K  A  E   : G  R  R  *  D  K  R  S  S  Q  F  W :   Y  I  Q  R  *  A  L  W  A  V  F  *  C  S  *  K  I  S  L  F  Q  K  L  A  R  W  K  *  R  S  G  S  V  G  *  G  I  K  D  I  P  Y  C  F  G   : G  D  A  K  I  W  M  Y  Y  F  Q  P  K  Q  P  R  *  D  L  K  I  T  R :   *  *  S  D  A  V  K  T  L  P  *  C  Y  *  A  V  F  F  C  N  C  T  L  *  R  *  C  S  L  L  L  Q  Q  :  G  S  C  F  N  P  D  P  T  I  *  S  S  S  S  R  L  P  K  I  Y  C  N  Q  P  Q  L  *  Q  G  L  *  *  I  G  F  C  L  L  C  S  R  E  V  P  *  C  H  R  *  G  I  H  K  S :   I  A  V  G  S  *  *  *  F  H  Q  G  K  Y  T   : G  S  R  T  K  V  E  R  R  A  T  E  E  M  E  *  S   : E  L  N  L  F  K  P  W  T  R  L  K  S  P  A  C  W  C  T  *  K  S  C  H  A  S  T  I  W  I  S  V  I  *  W  E  *  H  S  *  F  D  E  R  V  Y  E  H  D  K  R  C  I  P  R  A  A  W  S  R  P  A  R  R  K  Q  Q  H  *  F  N  Q  *  S  C  Y  K  N  K  Q  E  R  Q  S  W  F  W  *  T  D  A  *  G  I  D  R  N  L  K  V  C  Y  G  D  V  F  R  S  S  T  S  *  E  S  S  G  *  H  E  W  K  I  N  T  K  L  R  P  F  M  L  V  N  S  T  S  F  S  S  *  L  T  S  P  S  F  L  P  V  A  F  L  V  K  C  T  L  A  S  E  L  I  I  F  P  S  T  *  F  V  H  *  R  S  K  T  Q  V  C  S  V  I  L   </first_frame>
            <second_frame>  W  S  P  P  S  M  A  K  L  K  T  D  S  P  L  S  R  R  I  V  L  S  F  L  R  F  L  D  S   : V  E  P  A  A  G  V  D  Y  E  G  L  E  V  A  K  Q  C  L  S  E  A  F  K  I  D  P  S  S  H  A  S  S  S  D  S  L  V  D  I  F  S  S  G  E  A  V  D  Q  S  Q  R  S  V  D  L  R  H  D  V  S  S  S  D  A  P  C  T  S  S  R  Q  K  :  A  E  D  R  T  K  E  A  H  S  F   : G  I  S  K  D  E  L  F  G  Q  F  F  D  A  L  E  K  S  H  Y  F  R  S  L  P  D  G  N  D  D  Q  A  Q  L  D  K  A  S  R  I  F  H  T  A  L  E  :  E  M  Q  K  S  G  C  T  I  F  N  R  N  N  L  A  E  I  L  K  S  Q   : G  N  K  A  M  Q  S  K  L  Y  P  D  A  I  E  L  Y  S  F  A  I  A  L  C  E  D  N  A  V  Y  Y  C  N  R :   A  A  A  L  T  Q  I  Q  Q  Y  E  A  A  V  Q  D  C  Q  K  S  I  A  I  N  P  N  Y  S  K  A  Y  S  R  L  G  F  V  Y  Y  A  Q  G  K  Y  R  D  A  I  D  K  G  F  T  K   : A  L  Q  L  D  P  N  N  D  S  I  K  E  N  I  R  :  V  A  E  Q  K  L  K  E  E  Q  Q  R  R  W  N  D  Q  :  S  S  T  S  S  S  H  G  Q  D  S  N  H  Q  P  A  G  A  P  R  S  H  A  M  P  P  P  F  G  S  V  S  F  D  G  N  S  I  P  D  L  T  N  V  F  M  N  M  T  R  D  A  F  Q  G  Q  H  G  P  D  R  P  E  G  S  N  N  T  D  S  T  N  D  P  V  I  R  I  S  R  S  V  N  L  G  F  G  E  Q  M  P  E  E  L  T  G  T  L  R  S  V  M  E  M  F  S  G  A  Q  P  P  E  N  P  R  D  N  M  N  G  R  S  T  P  N  *  G  H  L  C  *  *  T  Q  P  H  S  R  V  D  *  H  L  H  P  F  Y  L  L  L  F  W  *  S  A  L  L  H  L  N  *  S  S  S  P  R  H  D  L  Y  I  K  D  L  K  L  R  F  A  V  *  S  *  </second_frame>
            <third_frame>   G  L  L  R  Q  W  R  S  *  R  R  I  L  L  S  R  V  A  *  F  S  P  S  C  A  S  L  I  L  :  W  N  L  L  Q  E  L  I  M  K  D  L  R  L  L  S  N  V  Y  Q  R  L  L  R  L  I  L  H  L  M  P  Q  V  Q  T  H  *  W  T  Y  S  V  Q  G  K  Q  L  T  K  A  K  E  V  *  I  L  G  M  M  Y  L  H  Q  M  L  L  V  H  L  Q  G  R  R :   P  K  I  G  Q  K  K  L  T  V  L  :  V  Y  P  K  M  S  S  L  G  S  F  L  M  L  L  K  N  L  T  I  S  E  A  C  P  M  E  M  T  I  R  L  S  W  I  R  H  Q  G  Y  S  I  L  L  W  R :   R  C  K  N  L  D  V  L  F  S  T  E  T  T  S  L  R  S  *  N  H  K  :  V  I  K  R  C  S  Q  N  F  T  L  M  L  L  S  C  I  L  L  Q  L  H  F  V  K  I  M  Q  F  T  I  A  T   : G  Q  L  L  *  P  R  S  N  N  M  K  Q  Q  F  K  T  A  K  N  L  L  Q  S  T  P  I  I  A  R  L  I  V  D  W  V  L  S  I  M  L  K  G  S  T  V  M  P  *  I  R  D  S  Q  K  :  H  C  S  W  I  L  I  M  I  P  S  R  K  I  Y  G :   *  Q  N  K  S  *  K  K  S  N  R  G  D  G  M  I  R :   A  Q  P  L  Q  A  M  D  K  T  Q  I  T  S  L  L  V  H  L  E  V  M  P  C  L  H  H  L  D  Q  C  H  L  M  G  I  A  F  L  I  *  R  T  C  L  *  T  *  Q  E  M  H  S  K  G  S  M  V  Q  T  G  Q  K  E  A  T  T  L  I  Q  P  M  I  L  L  *  E  *  A  G  A  S  I  L  V  L  V  N  R  C  L  R  N  *  Q  E  P  *  G  L  L  W  R  C  F  Q  E  L  N  L  L  R  I  L  G  I  T  *  M  E  D  Q  H  Q  I  E  A  I  Y  V  S  E  L  N  L  I  L  E  L  I  N  I  S  I  L  F  T  C  C  F  F  G  E  V  H  S  C  I  *  I  D  H  L  P  L  D  M  I  C  T  L  K  I  *  N  S  G  L  Q  C  N  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5422" stop="5509"/>
                    <exon start="8321" stop="8538"/>
                    <exon start="9573" stop="9606"/>
                    <exon start="11764" stop="11900"/>
                    <exon start="14571" stop="14637"/>
                    <exon start="16299" stop="16398"/>
                    <exon start="16946" stop="17109"/>
                    <exon start="18339" stop="18385"/>
                    <exon start="18485" stop="18535"/>
                    <exon start="18927" stop="19304"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSPPSMAKLKTDSPLSRRIVLSFLRFLDSVEPAAGVDYEGLEVAKQCLSEAFKIDPSSHASSSDSLVDIFSSGEAVDQSQRSVDLRHDVSSSDAPCTSSRQKAEDRTKEAHSFGISKDELFGQFFDALEKSHYFRSLPDGNDDQAQLDKASRIFHTALEEMQKSGCTIFNRNNLAEILKSQGNKAMQSKLYPDAIELYSFAIALCEDNAVYYCNRAAALTQIQQYEAAVQDCQKSIAINPNYSKAYSRLGFVYYAQGKYRDAIDKGFTKALQLDPNNDSIKENIRVAEQKLKEEQQRRWNDQSSTSSSHGQDSNHQPAGAPRSHAMPPPFGSVSFDGNSIPDLTNVFMNMTRDAFQGQHGPDRPEGSNNTDSTNDPVIRISRSVNLGFGEQMPEELTGTLRSVMEMFSGAQPPENPRDNMNGRSTPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5403" e_stop="5509"/>
            <exon e_start="8321" e_stop="8577"/>
            <exon e_start="9573" e_stop="9606"/>
            <exon e_start="11764" e_stop="11900"/>
            <exon e_start="14571" e_stop="14637"/>
            <exon e_start="16299" e_stop="16398"/>
            <exon e_start="16946" e_stop="17109"/>
            <exon e_start="18339" e_stop="18385"/>
            <exon e_start="18485" e_stop="18535"/>
            <exon e_start="18927" e_stop="19476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.743" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5403" e_stop="5509" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8321" e_stop="8577" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8578" i_stop="9572" i_length="995"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9573" e_stop="9606" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.893" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11764" e_stop="11900" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.982">
            <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14571" e_stop="14637" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16299" e_stop="16398" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.743" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16946" e_stop="17109" e_length="164"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17110" i_stop="18338" i_length="1229"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18339" e_stop="18385" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18485" e_stop="18535" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.898" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18536" i_stop="18926" i_length="391"/>
          </intron>
          <exon e_serial="10" e_score="0.929">
            <gDNA_exon_boundary e_start="18927" e_stop="19476" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5403" stop="5509"/>
              <exon start="8321" stop="8577"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5404" stop="5509"/>
              <exon start="8321" stop="8577"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5416" stop="5509"/>
              <exon start="8321" stop="8577"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5420" stop="5509"/>
              <exon start="8321" stop="8577"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5426" stop="5509"/>
              <exon start="8321" stop="8577"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5426" stop="5509"/>
              <exon start="8321" stop="8577"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5432" stop="5509"/>
              <exon start="8321" stop="8577"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5432" stop="5509"/>
              <exon start="8321" stop="8577"/>
              <exon start="9573" stop="9604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5465" stop="5509"/>
              <exon start="8321" stop="8577"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11871" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11872" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11878" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11885" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14580" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16975" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16997" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18488" stop="18535"/>
              <exon start="18927" stop="19329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18983" stop="19476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411097" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATAAAAAGCCACGCGGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG : TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAGGTTGTACATGCTAAAGATGCAGATCGATCACATTTGCTG : GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG : GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG : GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG : GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG : GGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAG : CATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGG : GTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAG : AGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTATAAGAATAAGCAGGAGCGTCAATCTTGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCGGGATAACATGAATGGAAGATCAACACCAAATTGAGGCCATTTATGTTAGTGAACTCAACCTCATTCTCGAGTTGATTAACATCTCCATCCTTTTTACCTGTTGCTTTTTTGGTGAAGTGCACTCTTGCATCTGAATTGATCATCTTCCCCTCGACATGATTTGTACATTAAAGATCTAAAACTCAGGTTTGCAGTGTAATCTTAGG</gDNA_template>
            <first_frame> F  I  K  S  H  A  V  V  S  S  V  N  G  E  A  E  D  G  F  S  S  L  A  S  H  S  S  L  L  L  A  L  P  *  F  C :   G  T  C  C  R  S  *  L  *  R  T  *  G  C  *  A  M  S  I  R  G  F  *  D  *  S  F  I  S  C  L  K  F  R  L  I  S  G  H  I  Q  F  R  G  S  S  *  P  K  P  K  K  C  R  S  *  A  *  C  I  F  I  R  C  S  L  Y  I  F  K  A  E  G  C  T  C  *  R  C  R  S  I  T  F  A   : G  R  R  *  D  K  R  S  S  Q  F  W :   Y  I  Q  R  *  A  L  W  A  V  F  *  C  S  *  K  I  S  L  F  Q  K  L  A  R  W  K  *  R  S  G  S  V  G  *  G  I  K  D  I  P  Y  C  F  G   : G  D  A  K  I  W  M  Y  Y  F  Q  P  K  Q  P  R  *  D  L  K  I  T  R :   *  *  S  D  A  V  K  T  L  P  *  C  Y  *  A  V  F  F  C  N  C  T  L  *  R  *  C  S  L  L  L  Q  Q  :  G  S  C  F  N  P  D  P  T  I  *  S  S  S  S  R  L  P  K  I  Y  C  N  Q  P  Q  L  *  Q  G  L  *  *  I  G  F  C  L  L  C  S  R  E  V  P  *  C  H  R  *  G  I  H  K  S :   I  A  V  G  S  *  *  *  F  H  Q  G  K  Y  T   : G  S  R  T  K  V  E  R  R  A  T  E  E  M  E  *  S   : E  L  N  L  F  K  P  W  T  R  L  K  S  P  A  C  W  C  T  *  K  S  C  H  A  S  T  I  W  I  S  V  I  *  W  E  *  H  S  *  F  D  E  R  V  Y  E  H  D  K  R  C  I  P  R  A  A  W  S  R  P  A  R  R  K  Q  Q  H  *  F  N  Q  *  S  C  Y  K  N  K  Q  E  R  Q  S  W  F  W  *  T  D  A  *  G  I  D  R  N  L  K  V  C  Y  G  D  V  F  R  S  S  T  S  *  E  S  S  G  *  H  E  W  K  I  N  T  K  L  R  P  F  M  L  V  N  S  T  S  F  S  S  *  L  T  S  P  S  F  L  P  V  A  F  L  V  K  C  T  L  A  S  E  L  I  I  F  P  S  T  *  F  V  H  *  R  S  K  T  Q  V  C  S  V  I  L   </first_frame>
            <second_frame>  S  *  K  A  T  R  W  S  P  P  S  M  A  K  L  K  T  D  S  P  L  S  R  R  I  V  L  S  F  L  R  F  L  D  S   : V  E  P  A  A  G  V  D  Y  E  G  L  E  V  A  K  Q  C  L  S  E  A  F  K  I  D  P  S  S  H  A  S  S  S  D  S  L  V  D  I  F  S  S  G  E  A  V  D  Q  S  Q  R  S  V  D  L  R  H  D  V  S  S  S  D  A  P  C  T  S  S  R  Q  K  V  V  H  A  K  D  A  D  R  S  H  L  L  :  A  E  D  R  T  K  E  A  H  S  F   : G  I  S  K  D  E  L  F  G  Q  F  F  D  A  L  E  K  S  H  Y  F  R  S  L  P  D  G  N  D  D  Q  A  Q  L  D  K  A  S  R  I  F  H  T  A  L  E  :  E  M  Q  K  S  G  C  T  I  F  N  R  N  N  L  A  E  I  L  K  S  Q   : G  N  K  A  M  Q  S  K  L  Y  P  D  A  I  E  L  Y  S  F  A  I  A  L  C  E  D  N  A  V  Y  Y  C  N  R :   A  A  A  L  T  Q  I  Q  Q  Y  E  A  A  V  Q  D  C  Q  K  S  I  A  I  N  P  N  Y  S  K  A  Y  S  R  L  G  F  V  Y  Y  A  Q  G  K  Y  R  D  A  I  D  K  G  F  T  K   : A  L  Q  L  D  P  N  N  D  S  I  K  E  N  I  R  :  V  A  E  Q  K  L  K  E  E  Q  Q  R  R  W  N  D  Q  :  S  S  T  S  S  S  H  G  Q  D  S  N  H  Q  P  A  G  A  P  R  S  H  A  M  P  P  P  F  G  S  V  S  F  D  G  N  S  I  P  D  L  T  N  V  F  M  N  M  T  R  D  A  F  Q  G  Q  H  G  P  D  R  P  E  G  S  N  N  T  D  S  T  N  D  P  V  I  R  I  S  R  S  V  N  L  G  F  G  E  Q  M  P  E  E  L  T  G  T  L  R  S  V  M  E  M  F  S  G  A  Q  P  P  E  N  P  R  D  N  M  N  G  R  S  T  P  N  *  G  H  L  C  *  *  T  Q  P  H  S  R  V  D  *  H  L  H  P  F  Y  L  L  L  F  W  *  S  A  L  L  H  L  N  *  S  S  S  P  R  H  D  L  Y  I  K  D  L  K  L  R  F  A  V  *  S  *  </second_frame>
            <third_frame>   H  K  K  P  R  G  G  L  L  R  Q  W  R  S  *  R  R  I  L  L  S  R  V  A  *  F  S  P  S  C  A  S  L  I  L  :  W  N  L  L  Q  E  L  I  M  K  D  L  R  L  L  S  N  V  Y  Q  R  L  L  R  L  I  L  H  L  M  P  Q  V  Q  T  H  *  W  T  Y  S  V  Q  G  K  Q  L  T  K  A  K  E  V  *  I  L  G  M  M  Y  L  H  Q  M  L  L  V  H  L  Q  G  R  R  L  Y  M  L  K  M  Q  I  D  H  I  C  W :   P  K  I  G  Q  K  K  L  T  V  L  :  V  Y  P  K  M  S  S  L  G  S  F  L  M  L  L  K  N  L  T  I  S  E  A  C  P  M  E  M  T  I  R  L  S  W  I  R  H  Q  G  Y  S  I  L  L  W  R :   R  C  K  N  L  D  V  L  F  S  T  E  T  T  S  L  R  S  *  N  H  K  :  V  I  K  R  C  S  Q  N  F  T  L  M  L  L  S  C  I  L  L  Q  L  H  F  V  K  I  M  Q  F  T  I  A  T   : G  Q  L  L  *  P  R  S  N  N  M  K  Q  Q  F  K  T  A  K  N  L  L  Q  S  T  P  I  I  A  R  L  I  V  D  W  V  L  S  I  M  L  K  G  S  T  V  M  P  *  I  R  D  S  Q  K  :  H  C  S  W  I  L  I  M  I  P  S  R  K  I  Y  G :   *  Q  N  K  S  *  K  K  S  N  R  G  D  G  M  I  R :   A  Q  P  L  Q  A  M  D  K  T  Q  I  T  S  L  L  V  H  L  E  V  M  P  C  L  H  H  L  D  Q  C  H  L  M  G  I  A  F  L  I  *  R  T  C  L  *  T  *  Q  E  M  H  S  K  G  S  M  V  Q  T  G  Q  K  E  A  T  T  L  I  Q  P  M  I  L  L  *  E  *  A  G  A  S  I  L  V  L  V  N  R  C  L  R  N  *  Q  E  P  *  G  L  L  W  R  C  F  Q  E  L  N  L  L  R  I  L  G  I  T  *  M  E  D  Q  H  Q  I  E  A  I  Y  V  S  E  L  N  L  I  L  E  L  I  N  I  S  I  L  F  T  C  C  F  F  G  E  V  H  S  C  I  *  I  D  H  L  P  L  D  M  I  C  T  L  K  I  *  N  S  G  L  Q  C  N  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5410" stop="5509"/>
                    <exon start="8321" stop="8577"/>
                    <exon start="9573" stop="9606"/>
                    <exon start="11764" stop="11900"/>
                    <exon start="14571" stop="14637"/>
                    <exon start="16299" stop="16398"/>
                    <exon start="16946" stop="17109"/>
                    <exon start="18339" stop="18385"/>
                    <exon start="18485" stop="18535"/>
                    <exon start="18927" stop="19304"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1332</number_coding_nucleotides>
                  <number_encoded_amino_acids>444</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KATRWSPPSMAKLKTDSPLSRRIVLSFLRFLDSVEPAAGVDYEGLEVAKQCLSEAFKIDPSSHASSSDSLVDIFSSGEAVDQSQRSVDLRHDVSSSDAPCTSSRQKVVHAKDADRSHLLAEDRTKEAHSFGISKDELFGQFFDALEKSHYFRSLPDGNDDQAQLDKASRIFHTALEEMQKSGCTIFNRNNLAEILKSQGNKAMQSKLYPDAIELYSFAIALCEDNAVYYCNRAAALTQIQQYEAAVQDCQKSIAINPNYSKAYSRLGFVYYAQGKYRDAIDKGFTKALQLDPNNDSIKENIRVAEQKLKEEQQRRWNDQSSTSSSHGQDSNHQPAGAPRSHAMPPPFGSVSFDGNSIPDLTNVFMNMTRDAFQGQHGPDRPEGSNNTDSTNDPVIRISRSVNLGFGEQMPEELTGTLRSVMEMFSGAQPPENPRDNMNGRSTPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="5421" e_stop="5509"/>
            <exon e_start="8321" e_stop="8538"/>
            <exon e_start="9573" e_stop="9606"/>
            <exon e_start="11764" e_stop="11900"/>
            <exon e_start="14571" e_stop="14637"/>
            <exon e_start="16299" e_stop="16398"/>
            <exon e_start="16946" e_stop="17109"/>
            <exon e_start="18338" e_stop="18385"/>
            <exon e_start="18485" e_stop="18535"/>
            <exon e_start="18927" e_stop="19476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.743" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.976"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="0.958"/>
          <exon-intron don_prob="0.898" acc_prob="0.998" e_score="0.938"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5421" e_stop="5509" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8321" e_stop="8538" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9573" e_stop="9606" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.893" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11764" e_stop="11900" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.982">
            <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14571" e_stop="14637" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16299" e_stop="16398" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.743" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="16946" e_stop="17109" e_length="164"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17110" i_stop="18337" i_length="1228"/>
          </intron>
          <exon e_serial="8" e_score="0.958">
            <gDNA_exon_boundary e_start="18338" e_stop="18385" e_length="48"/>
          </exon>
          <intron i_serial="8" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="0.938">
            <gDNA_exon_boundary e_start="18485" e_stop="18535" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.898" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18536" i_stop="18926" i_length="391"/>
          </intron>
          <exon e_serial="10" e_score="0.929">
            <gDNA_exon_boundary e_start="18927" e_stop="19476" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5421" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5421" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5427" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5431" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5432" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5433" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5433" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5438" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5441" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5451" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11771" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18338" stop="18385"/>
              <exon start="18485" stop="18535"/>
              <exon start="18927" stop="19005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18488" stop="18535"/>
              <exon start="18927" stop="19329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18983" stop="19476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411097" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG : TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG : GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG : GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG : GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG : GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG : GGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAG : GCATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGG : GTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAG : AGCTCAACCTCTTCAAGCCATGGACAAGACTCAAATCACCAGCCTGCTGGTGCACCTAGAAGTCATGCCATGCCTCCACCATTTGGATCAGTGTCATTTGATGGGAATAGCATTCCTGATTTGACGAACGTGTTTATGAACATGACAAGAGATGCATTCCAAGGGCAGCATGGTCCAGACCGGCCAGAAGGAAGCAACAACACTGATTCAACCAATGATCCTGTTATAAGAATAAGCAGGAGCGTCAATCTTGGTTTTGGTGAACAGATGCCTGAGGAATTGACAGGAACCTTAAGGTCTGTTATGGAGATGTTTTCAGGAGCTCAACCTCCTGAGAATCCTCGGGATAACATGAATGGAAGATCAACACCAAATTGAGGCCATTTATGTTAGTGAACTCAACCTCATTCTCGAGTTGATTAACATCTCCATCCTTTTTACCTGTTGCTTTTTTGGTGAAGTGCACTCTTGCATCTGAATTGATCATCTTCCCCTCGACATGATTTGTACATTAAAGATCTAAAACTCAGGTTTGCAGTGTAATCTTAGG</gDNA_template>
            <first_frame> V  V  S  S  V  N  G  E  A  E  D  G  F  S  S  L  A  S  H  S  S  L  L  L  A  L  P  *  F  C :   G  T  C  C  R  S  *  L  *  R  T  *  G  C  *  A  M  S  I  R  G  F  *  D  *  S  F  I  S  C  L  K  F  R  L  I  S  G  H  I  Q  F  R  G  S  S  *  P  K  P  K  K  C  R  S  *  A  *  C  I  F  I  R  C  S  L  Y  I  F  K  A  E   : G  R  R  *  D  K  R  S  S  Q  F  W :   Y  I  Q  R  *  A  L  W  A  V  F  *  C  S  *  K  I  S  L  F  Q  K  L  A  R  W  K  *  R  S  G  S  V  G  *  G  I  K  D  I  P  Y  C  F  G   : G  D  A  K  I  W  M  Y  Y  F  Q  P  K  Q  P  R  *  D  L  K  I  T  R :   *  *  S  D  A  V  K  T  L  P  *  C  Y  *  A  V  F  F  C  N  C  T  L  *  R  *  C  S  L  L  L  Q  Q  :  G  S  C  F  N  P  D  P  T  I  *  S  S  S  S  R  L  P  K  I  Y  C  N  Q  P  Q  L  *  Q  G  L  *  *  I  G  F  C  L  L  C  S  R  E  V  P  *  C  H  R  *  G  I  H  K  R :   H  C  S  W  I  L  I  M  I  P  S  R  K  I  Y  G :   *  Q  N  K  S  *  K  K  S  N  R  G  D  G  M  I  R :   A  Q  P  L  Q  A  M  D  K  T  Q  I  T  S  L  L  V  H  L  E  V  M  P  C  L  H  H  L  D  Q  C  H  L  M  G  I  A  F  L  I  *  R  T  C  L  *  T  *  Q  E  M  H  S  K  G  S  M  V  Q  T  G  Q  K  E  A  T  T  L  I  Q  P  M  I  L  L  *  E  *  A  G  A  S  I  L  V  L  V  N  R  C  L  R  N  *  Q  E  P  *  G  L  L  W  R  C  F  Q  E  L  N  L  L  R  I  L  G  I  T  *  M  E  D  Q  H  Q  I  E  A  I  Y  V  S  E  L  N  L  I  L  E  L  I  N  I  S  I  L  F  T  C  C  F  F  G  E  V  H  S  C  I  *  I  D  H  L  P  L  D  M  I  C  T  L  K  I  *  N  S  G  L  Q  C  N  L  R </first_frame>
            <second_frame>  W  S  P  P  S  M  A  K  L  K  T  D  S  P  L  S  R  R  I  V  L  S  F  L  R  F  L  D  S   : V  E  P  A  A  G  V  D  Y  E  G  L  E  V  A  K  Q  C  L  S  E  A  F  K  I  D  P  S  S  H  A  S  S  S  D  S  L  V  D  I  F  S  S  G  E  A  V  D  Q  S  Q  R  S  V  D  L  R  H  D  V  S  S  S  D  A  P  C  T  S  S  R  Q  K  :  A  E  D  R  T  K  E  A  H  S  F   : G  I  S  K  D  E  L  F  G  Q  F  F  D  A  L  E  K  S  H  Y  F  R  S  L  P  D  G  N  D  D  Q  A  Q  L  D  K  A  S  R  I  F  H  T  A  L  E  :  E  M  Q  K  S  G  C  T  I  F  N  R  N  N  L  A  E  I  L  K  S  Q   : G  N  K  A  M  Q  S  K  L  Y  P  D  A  I  E  L  Y  S  F  A  I  A  L  C  E  D  N  A  V  Y  Y  C  N  R :   A  A  A  L  T  Q  I  Q  Q  Y  E  A  A  V  Q  D  C  Q  K  S  I  A  I  N  P  N  Y  S  K  A  Y  S  R  L  G  F  V  Y  Y  A  Q  G  K  Y  R  D  A  I  D  K  G  F  T  K   : G  I  A  V  G  S  *  *  *  F  H  Q  G  K  Y  T   : G  S  R  T  K  V  E  R  R  A  T  E  E  M  E  *  S   : E  L  N  L  F  K  P  W  T  R  L  K  S  P  A  C  W  C  T  *  K  S  C  H  A  S  T  I  W  I  S  V  I  *  W  E  *  H  S  *  F  D  E  R  V  Y  E  H  D  K  R  C  I  P  R  A  A  W  S  R  P  A  R  R  K  Q  Q  H  *  F  N  Q  *  S  C  Y  K  N  K  Q  E  R  Q  S  W  F  W  *  T  D  A  *  G  I  D  R  N  L  K  V  C  Y  G  D  V  F  R  S  S  T  S  *  E  S  S  G  *  H  E  W  K  I  N  T  K  L  R  P  F  M  L  V  N  S  T  S  F  S  S  *  L  T  S  P  S  F  L  P  V  A  F  L  V  K  C  T  L  A  S  E  L  I  I  F  P  S  T  *  F  V  H  *  R  S  K  T  Q  V  C  S  V  I  L   </second_frame>
            <third_frame>   G  L  L  R  Q  W  R  S  *  R  R  I  L  L  S  R  V  A  *  F  S  P  S  C  A  S  L  I  L  :  W  N  L  L  Q  E  L  I  M  K  D  L  R  L  L  S  N  V  Y  Q  R  L  L  R  L  I  L  H  L  M  P  Q  V  Q  T  H  *  W  T  Y  S  V  Q  G  K  Q  L  T  K  A  K  E  V  *  I  L  G  M  M  Y  L  H  Q  M  L  L  V  H  L  Q  G  R  R :   P  K  I  G  Q  K  K  L  T  V  L  :  V  Y  P  K  M  S  S  L  G  S  F  L  M  L  L  K  N  L  T  I  S  E  A  C  P  M  E  M  T  I  R  L  S  W  I  R  H  Q  G  Y  S  I  L  L  W  R :   R  C  K  N  L  D  V  L  F  S  T  E  T  T  S  L  R  S  *  N  H  K  :  V  I  K  R  C  S  Q  N  F  T  L  M  L  L  S  C  I  L  L  Q  L  H  F  V  K  I  M  Q  F  T  I  A  T   : G  Q  L  L  *  P  R  S  N  N  M  K  Q  Q  F  K  T  A  K  N  L  L  Q  S  T  P  I  I  A  R  L  I  V  D  W  V  L  S  I  M  L  K  G  S  T  V  M  P  *  I  R  D  S  Q  K  :  A  L  Q  L  D  P  N  N  D  S  I  K  E  N  I  R  :  V  A  E  Q  K  L  K  E  E  Q  Q  R  R  W  N  D  Q  :  S  S  T  S  S  S  H  G  Q  D  S  N  H  Q  P  A  G  A  P  R  S  H  A  M  P  P  P  F  G  S  V  S  F  D  G  N  S  I  P  D  L  T  N  V  F  M  N  M  T  R  D  A  F  Q  G  Q  H  G  P  D  R  P  E  G  S  N  N  T  D  S  T  N  D  P  V  I  R  I  S  R  S  V  N  L  G  F  G  E  Q  M  P  E  E  L  T  G  T  L  R  S  V  M  E  M  F  S  G  A  Q  P  P  E  N  P  R  D  N  M  N  G  R  S  T  P  N  *  G  H  L  C  *  *  T  Q  P  H  S  R  V  D  *  H  L  H  P  F  Y  L  L  L  F  W  *  S  A  L  L  H  L  N  *  S  S  S  P  R  H  D  L  Y  I  K  D  L  K  L  R  F  A  V  *  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5422" stop="5509"/>
                    <exon start="8321" stop="8538"/>
                    <exon start="9573" stop="9606"/>
                    <exon start="11764" stop="11900"/>
                    <exon start="14571" stop="14637"/>
                    <exon start="16299" stop="16398"/>
                    <exon start="16946" stop="17109"/>
                    <exon start="18338" stop="18357"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSPPSMAKLKTDSPLSRRIVLSFLRFLDSVEPAAGVDYEGLEVAKQCLSEAFKIDPSSHASSSDSLVDIFSSGEAVDQSQRSVDLRHDVSSSDAPCTSSRQKAEDRTKEAHSFGISKDELFGQFFDALEKSHYFRSLPDGNDDQAQLDKASRIFHTALEEMQKSGCTIFNRNNLAEILKSQGNKAMQSKLYPDAIELYSFAIALCEDNAVYYCNRAAALTQIQQYEAAVQDCQKSIAINPNYSKAYSRLGFVYYAQGKYRDAIDKGFTKGIAVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="5421" e_stop="5509"/>
            <exon e_start="8321" e_stop="8538"/>
            <exon e_start="9573" e_stop="9606"/>
            <exon e_start="11764" e_stop="11900"/>
            <exon e_start="14571" e_stop="14637"/>
            <exon e_start="16299" e_stop="16398"/>
            <exon e_start="16946" e_stop="17109"/>
            <exon e_start="18339" e_stop="18385"/>
            <exon e_start="18485" e_stop="18698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.743" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.982"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="0.979"/>
          <exon-only e_score="0.888"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5421" e_stop="5509" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8321" e_stop="8538" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9573" e_stop="9606" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.893" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9607" i_stop="11763" i_length="2157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11764" e_stop="11900" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.982">
            <gDNA_intron_boundary i_start="11901" i_stop="14570" i_length="2670"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14571" e_stop="14637" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="14638" i_stop="16298" i_length="1661"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16299" e_stop="16398" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.743" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16399" i_stop="16945" i_length="547"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="16946" e_stop="17109" e_length="164"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17110" i_stop="18338" i_length="1229"/>
          </intron>
          <exon e_serial="8" e_score="0.979">
            <gDNA_exon_boundary e_start="18339" e_stop="18385" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18386" i_stop="18484" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="0.888">
            <gDNA_exon_boundary e_start="18485" e_stop="18698" e_length="214"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5421" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5421" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5427" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5431" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5432" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5433" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5433" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5438" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5441" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5451" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="11764" stop="11900"/>
              <exon start="14571" stop="14635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11835" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11885" stop="11900"/>
              <exon start="14571" stop="14637"/>
              <exon start="16299" stop="16398"/>
              <exon start="16946" stop="17109"/>
              <exon start="18339" stop="18385"/>
              <exon start="18485" stop="18535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG : TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG : GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG : GTATATCCAAAGATGAGCTCTTTGGGCAGTTTTTTGATGCTCTTGAAAAATCTCACTATTTCAGAAGCTTGCCCGATGGAAATGACGATCAGGCTCAGTTGGATAAGGCATCAAGGATATTCCATACTGCTTTGGAG : GAGATGCAAAAATCTGGATGTACTATTTTCAACCGAAACAACCTCGCTGAGATCTTAAAATCACAAG : GTAATAAAGCGATGCAGTCAAAACTTTACCCTGATGCTATTGAGCTGTATTCTTTTGCAATTGCACTTTGTGAAGATAATGCAGTTTACTATTGCAACAG : GGCAGCTGCTTTAACCCAGATCCAACAATATGAAGCAGCAGTTCAAGACTGCCAAAAATCTATTGCAATCAACCCCAATTATAGCAAGGCTTATAGTAGATTGGGTTTTGTCTATTATGCTCAAGGGAAGTACCGTGATGCCATAGATAAGGGATTCACAAAAG : CATTGCAGTTGGATCCTAATAATGATTCCATCAAGGAAAATATACGG : GTAGCAGAACAAAAGTTGAAAGAAGAGCAACAGAGGAGATGGAATGATCAGGTAACTGACAATTGTGGCATTACAGAAGAGCTTTACTTGATTTATTAAGTTGATAATTACAAGGTATGTAATTAACAACCAAATCATGTGCTGAGCTCAATACTCTGTAATAATCTGTCTGTCTGTGGTAGCACCATCTAATGCTGCATTTTCGTGTGAGGAA</gDNA_template>
            <first_frame> V  V  S  S  V  N  G  E  A  E  D  G  F  S  S  L  A  S  H  S  S  L  L  L  A  L  P  *  F  C :   G  T  C  C  R  S  *  L  *  R  T  *  G  C  *  A  M  S  I  R  G  F  *  D  *  S  F  I  S  C  L  K  F  R  L  I  S  G  H  I  Q  F  R  G  S  S  *  P  K  P  K  K  C  R  S  *  A  *  C  I  F  I  R  C  S  L  Y  I  F  K  A  E   : G  R  R  *  D  K  R  S  S  Q  F  W :   Y  I  Q  R  *  A  L  W  A  V  F  *  C  S  *  K  I  S  L  F  Q  K  L  A  R  W  K  *  R  S  G  S  V  G  *  G  I  K  D  I  P  Y  C  F  G   : G  D  A  K  I  W  M  Y  Y  F  Q  P  K  Q  P  R  *  D  L  K  I  T  R :   *  *  S  D  A  V  K  T  L  P  *  C  Y  *  A  V  F  F  C  N  C  T  L  *  R  *  C  S  L  L  L  Q  Q  :  G  S  C  F  N  P  D  P  T  I  *  S  S  S  S  R  L  P  K  I  Y  C  N  Q  P  Q  L  *  Q  G  L  *  *  I  G  F  C  L  L  C  S  R  E  V  P  *  C  H  R  *  G  I  H  K  S :   I  A  V  G  S  *  *  *  F  H  Q  G  K  Y  T   : G  S  R  T  K  V  E  R  R  A  T  E  E  M  E  *  S  G  N  *  Q  L  W  H  Y  R  R  A  L  L  D  L  L  S  *  *  L  Q  G  M  *  L  T  T  K  S  C  A  E  L  N  T  L  *  *  S  V  C  L  W  *  H  H  L  M  L  H  F  R  V  R   </first_frame>
            <second_frame>  W  S  P  P  S  M  A  K  L  K  T  D  S  P  L  S  R  R  I  V  L  S  F  L  R  F  L  D  S   : V  E  P  A  A  G  V  D  Y  E  G  L  E  V  A  K  Q  C  L  S  E  A  F  K  I  D  P  S  S  H  A  S  S  S  D  S  L  V  D  I  F  S  S  G  E  A  V  D  Q  S  Q  R  S  V  D  L  R  H  D  V  S  S  S  D  A  P  C  T  S  S  R  Q  K  :  A  E  D  R  T  K  E  A  H  S  F   : G  I  S  K  D  E  L  F  G  Q  F  F  D  A  L  E  K  S  H  Y  F  R  S  L  P  D  G  N  D  D  Q  A  Q  L  D  K  A  S  R  I  F  H  T  A  L  E  :  E  M  Q  K  S  G  C  T  I  F  N  R  N  N  L  A  E  I  L  K  S  Q   : G  N  K  A  M  Q  S  K  L  Y  P  D  A  I  E  L  Y  S  F  A  I  A  L  C  E  D  N  A  V  Y  Y  C  N  R :   A  A  A  L  T  Q  I  Q  Q  Y  E  A  A  V  Q  D  C  Q  K  S  I  A  I  N  P  N  Y  S  K  A  Y  S  R  L  G  F  V  Y  Y  A  Q  G  K  Y  R  D  A  I  D  K  G  F  T  K   : A  L  Q  L  D  P  N  N  D  S  I  K  E  N  I  R  :  V  A  E  Q  K  L  K  E  E  Q  Q  R  R  W  N  D  Q  V  T  D  N  C  G  I  T  E  E  L  Y  L  I  Y  *  V  D  N  Y  K  V  C  N  *  Q  P  N  H  V  L  S  S  I  L  C  N  N  L  S  V  C  G  S  T  I  *  C  C  I  F  V  *  G  </second_frame>
            <third_frame>   G  L  L  R  Q  W  R  S  *  R  R  I  L  L  S  R  V  A  *  F  S  P  S  C  A  S  L  I  L  :  W  N  L  L  Q  E  L  I  M  K  D  L  R  L  L  S  N  V  Y  Q  R  L  L  R  L  I  L  H  L  M  P  Q  V  Q  T  H  *  W  T  Y  S  V  Q  G  K  Q  L  T  K  A  K  E  V  *  I  L  G  M  M  Y  L  H  Q  M  L  L  V  H  L  Q  G  R  R :   P  K  I  G  Q  K  K  L  T  V  L  :  V  Y  P  K  M  S  S  L  G  S  F  L  M  L  L  K  N  L  T  I  S  E  A  C  P  M  E  M  T  I  R  L  S  W  I  R  H  Q  G  Y  S  I  L  L  W  R :   R  C  K  N  L  D  V  L  F  S  T  E  T  T  S  L  R  S  *  N  H  K  :  V  I  K  R  C  S  Q  N  F  T  L  M  L  L  S  C  I  L  L  Q  L  H  F  V  K  I  M  Q  F  T  I  A  T   : G  Q  L  L  *  P  R  S  N  N  M  K  Q  Q  F  K  T  A  K  N  L  L  Q  S  T  P  I  I  A  R  L  I  V  D  W  V  L  S  I  M  L  K  G  S  T  V  M  P  *  I  R  D  S  Q  K  :  H  C  S  W  I  L  I  M  I  P  S  R  K  I  Y  G :   *  Q  N  K  S  *  K  K  S  N  R  G  D  G  M  I  R  *  L  T  I  V  A  L  Q  K  S  F  T  *  F  I  K  L  I  I  T  R  Y  V  I  N  N  Q  I  M  C  *  A  Q  Y  S  V  I  I  C  L  S  V  V  A  P  S  N  A  A  F  S  C  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5422" stop="5509"/>
                    <exon start="8321" stop="8538"/>
                    <exon start="9573" stop="9606"/>
                    <exon start="11764" stop="11900"/>
                    <exon start="14571" stop="14637"/>
                    <exon start="16299" stop="16398"/>
                    <exon start="16946" stop="17109"/>
                    <exon start="18339" stop="18385"/>
                    <exon start="18485" stop="18583"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>951</number_coding_nucleotides>
                  <number_encoded_amino_acids>317</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSPPSMAKLKTDSPLSRRIVLSFLRFLDSVEPAAGVDYEGLEVAKQCLSEAFKIDPSSHASSSDSLVDIFSSGEAVDQSQRSVDLRHDVSSSDAPCTSSRQKAEDRTKEAHSFGISKDELFGQFFDALEKSHYFRSLPDGNDDQAQLDKASRIFHTALEEMQKSGCTIFNRNNLAEILKSQGNKAMQSKLYPDAIELYSFAIALCEDNAVYYCNRAAALTQIQQYEAAVQDCQKSIAINPNYSKAYSRLGFVYYAQGKYRDAIDKGFTKALQLDPNNDSIKENIRVAEQKLKEEQQRRWNDQVTDNCGITEELYLIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="5419" e_stop="5509"/>
            <exon e_start="8321" e_stop="8538"/>
            <exon e_start="9573" e_stop="9606"/>
            <exon e_start="9873" e_stop="10242"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.672" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5419" e_stop="5509" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5510" i_stop="8320" i_length="2811"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8321" e_stop="8538" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8539" i_stop="9572" i_length="1034"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9573" e_stop="9606" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.893" acc_prob="0.672">
            <gDNA_intron_boundary i_start="9607" i_stop="9872" i_length="266"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="9873" e_stop="10242" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5419" stop="5509"/>
              <exon start="8321" stop="8538"/>
              <exon start="9573" stop="9606"/>
              <exon start="9873" stop="10242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGTGGTCTCCTCCGTCAATGGCGAAGCTGAAGACGGATTCTCCTCTCTCGCGTCGCATAGTTCTCTCCTTCTTGCGCTTCCTTGATTCTG : TGGAACCTGCTGCAGGAGTTGATTATGAAGGACTTGAGGTTGCTAAGCAATGTCTATCAGAGGCTTTTAAGATTGATCCTTCATCTCATGCCTCAAGTTCAGACTCATTAGTGGACATATTCAGTTCAGGGGAAGCAGTTGACCAAAGCCAAAGAAGTGTAGATCTTAGGCATGATGTATCTTCATCAGATGCTCCTTGTACATCTTCAAGGCAGAAG : GCCGAAGATAGGACAAAAGAAGCTCACAGTTTTG : TGTCATTAAATGCTCGCTTGAAGCACACTTAAACTCTGAAGTTTTGTGAGGCGCAATTTAGACGTTCCACCTTGCTGAGATGGCGGTTTTGTGCAAGCACCAAGCCACTTAGACCTACACCTCATCACCACGGGTCTGTCTTTAAGAGGGCAAATCTTGGCAATTAATATAGTTGGCAAAGCAATATAGTTTTTGTTAACAAAACGTTATTAATGAACTTGTTAGTGATCGGGATCAAGAAACTAGAGAACTAATAAAGCACTGCTAACTAACTTTTTTTTTTTAAAAAAATGTACATGTTTGCATCCAATTCTTAAGTTTAATTTGGTTCATGTACTTTTTGCATCTATATTTTGCCTAGTTCCAATTT</gDNA_template>
            <first_frame> R  W  S  P  P  S  M  A  K  L  K  T  D  S  P  L  S  R  R  I  V  L  S  F  L  R  F  L  D  S   : V  E  P  A  A  G  V  D  Y  E  G  L  E  V  A  K  Q  C  L  S  E  A  F  K  I  D  P  S  S  H  A  S  S  S  D  S  L  V  D  I  F  S  S  G  E  A  V  D  Q  S  Q  R  S  V  D  L  R  H  D  V  S  S  S  D  A  P  C  T  S  S  R  Q  K  :  A  E  D  R  T  K  E  A  H  S  F   : V  S  L  N  A  R  L  K  H  T  *  T  L  K  F  C  E  A  Q  F  R  R  S  T  L  L  R  W  R  F  C  A  S  T  K  P  L  R  P  T  P  H  H  H  G  S  V  F  K  R  A  N  L  G  N  *  Y  S  W  Q  S  N  I  V  F  V  N  K  T  L  L  M  N  L  L  V  I  G  I  K  K  L  E  N  *  *  S  T  A  N  *  L  F  F  F  K  K  M  Y  M  F  A  S  N  S  *  V  *  F  G  S  C  T  F  C  I  Y  I  L  P  S  S  N   </first_frame>
            <second_frame>  G  G  L  L  R  Q  W  R  S  *  R  R  I  L  L  S  R  V  A  *  F  S  P  S  C  A  S  L  I  L  :  W  N  L  L  Q  E  L  I  M  K  D  L  R  L  L  S  N  V  Y  Q  R  L  L  R  L  I  L  H  L  M  P  Q  V  Q  T  H  *  W  T  Y  S  V  Q  G  K  Q  L  T  K  A  K  E  V  *  I  L  G  M  M  Y  L  H  Q  M  L  L  V  H  L  Q  G  R  R :   P  K  I  G  Q  K  K  L  T  V  L  :  C  H  *  M  L  A  *  S  T  L  K  L  *  S  F  V  R  R  N  L  D  V  P  P  C  *  D  G  G  F  V  Q  A  P  S  H  L  D  L  H  L  I  T  T  G  L  S  L  R  G  Q  I  L  A  I  N  I  V  G  K  A  I  *  F  L  L  T  K  R  Y  *  *  T  C  *  *  S  G  S  R  N  *  R  T  N  K  A  L  L  T  N  F  F  F  L  K  K  C  T  C  L  H  P  I  L  K  F  N  L  V  H  V  L  F  A  S  I  F  C  L  V  P  I  </second_frame>
            <third_frame>   V  V  S  S  V  N  G  E  A  E  D  G  F  S  S  L  A  S  H  S  S  L  L  L  A  L  P  *  F  C :   G  T  C  C  R  S  *  L  *  R  T  *  G  C  *  A  M  S  I  R  G  F  *  D  *  S  F  I  S  C  L  K  F  R  L  I  S  G  H  I  Q  F  R  G  S  S  *  P  K  P  K  K  C  R  S  *  A  *  C  I  F  I  R  C  S  L  Y  I  F  K  A  E   : G  R  R  *  D  K  R  S  S  Q  F  C :   V  I  K  C  S  L  E  A  H  L  N  S  E  V  L  *  G  A  I  *  T  F  H  L  A  E  M  A  V  L  C  K  H  Q  A  T  *  T  Y  T  S  S  P  R  V  C  L  *  E  G  K  S  W  Q  L  I  *  L  A  K  Q  Y  S  F  C  *  Q  N  V  I  N  E  L  V  S  D  R  D  Q  E  T  R  E  L  I  K  H  C  *  L  T  F  F  F  *  K  N  V  H  V  C  I  Q  F  L  S  L  I  W  F  M  Y  F  L  H  L  Y  F  A  *  F  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5419" stop="5509"/>
                    <exon start="8321" stop="8538"/>
                    <exon start="9573" stop="9606"/>
                    <exon start="9873" stop="9904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RWSPPSMAKLKTDSPLSRRIVLSFLRFLDSVEPAAGVDYEGLEVAKQCLSEAFKIDPSSHASSSDSLVDIFSSGEAVDQSQRSVDLRHDVSSSDAPCTSSRQKAEDRTKEAHSFVSLNARLKHT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="21924" PGL_stop="21163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21924" e_stop="21633"/>
            <exon e_start="21481" e_stop="21163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.932"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="21924" e_stop="21633" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21632" i_stop="21482" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="21481" e_stop="21163" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21924" stop="21633"/>
              <exon start="21481" stop="21255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21399" stop="21163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTGTTAATGATGATGCCTTGGTACAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCAACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAG : TATATTGAGGAGCGGAGTGTCACGTACTGACACGAGGGGAATAAAGATAATGAATCTTGAAAGATGATAATATATTCAAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTTGTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  V  N  D  D  A  L  V  Q  K  K  A  *  *  M  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I   : V  Y  *  G  A  E  C  H  V  L  T  R  G  E  *  R  *  *  I  L  K  D  D  N  I  F  K  S  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  C  F  L  L  C  Y  L   </first_frame>
            <second_frame>  L  I  Y  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  *  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  Q  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  :  Y  I  E  E  R  S  V  T  Y  *  H  E  G  N  K  D  N  E  S  *  K  M  I  I  Y  S  N  L  M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  V  F  F  F  V  I  C  </second_frame>
            <third_frame>   *  S  T  C  *  *  *  C  L  G  T  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  N  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  S :   I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  R  *  *  Y  I  Q  I  *  *  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  L  F  S  S  L  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0062I24.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="24540" PGL_stop="24929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24540" e_stop="24929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="24540" e_stop="24929" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24540" stop="24929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGACGACGGATTCCACGACGGACCGTCATGGGCACGACGGACCGTCGAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGGCCGTCACAGACCCTTCAAAGAATTGAGTCTCTGAACTTTGTGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACGGGCCGTCACAGACTGCGTAATCCCAGGCTGGGTCGGATTTCTGTTAAATGTTTTAAGGGGCGTTTTGGGCTATTCCTGCTTATAATTATAAAGTTAGTGGTTGAATATTAATAATTCAATTTCTTGAGGGTTAAAAGAGATAACCTTGAATCAATT</gDNA_template>
            <first_frame> *  D  D  G  F  H  D  G  P  S  W  A  R  R  T  V  E  G  V  S  F  Q  N  T  *  N  S  E  I  W  V  L  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  Q  T  L  Q  R  I  E  S  L  N  F  V  T  E  A  A  G  R  T  V  A  G  T  T  G  R  H  R  L  R  N  P  R  L  G  R  I  S  V  K  C  F  K  G  R  F  G  L  F  L  L  I  I  I  K  L  V  V  E  Y  *  *  F  N  F  L  R  V  K  R  D  N  L  E  S  I </first_frame>
            <second_frame>  E  T  T  D  S  T  T  D  R  H  G  H  D  G  P  S  R  G  S  R  S  K  T  L  R  I  L  K  F  G  Y  *  N  R  L  S  E  L  R  D  G  M  A  G  R  T  V  T  G  V  T  G  R  H  R  P  F  K  E  L  S  L  *  T  L  *  R  K  Q  Q  D  G  P  S  Q  A  R  R  A  V  T  D  C  V  I  P  G  W  V  G  F  L  L  N  V  L  R  G  V  L  G  Y  S  C  L  *  L  *  S  *  W  L  N  I  N  N  S  I  S  *  G  L  K  E  I  T  L  N  Q   </second_frame>
            <third_frame>   R  R  R  I  P  R  R  T  V  M  G  T  T  D  R  R  G  G  L  V  P  K  H  L  E  F  *  N  L  G  T  E  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  R  A  V  T  D  P  S  K  N  *  V  S  E  L  C  D  G  S  S  R  T  D  R  R  R  H  D  G  P  S  Q  T  A  *  S  Q  A  G  S  D  F  C  *  M  F  *  G  A  F  W  A  I  P  A  Y  N  Y  K  V  S  G  *  I  L  I  I  Q  F  L  E  G  *  K  R  *  P  *  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24660" stop="24884"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNGRTDRHRRDGPSQTLQRIESLNFVTEAAGRTVAGTTGRHRLRNPRLGRISVKCFKGRFGLFLLIIIKLVVEY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28921" PGL_stop="35364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28921" e_stop="29218"/>
            <exon e_start="34616" e_stop="35098"/>
            <exon e_start="35350" e_stop="35364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28921" e_stop="29218" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.941">
            <gDNA_intron_boundary i_start="29219" i_stop="34615" i_length="5397"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34616" e_stop="35098" e_length="483"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35099" i_stop="35349" i_length="251"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="35350" e_stop="35364" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28921" stop="29218"/>
              <exon start="34616" stop="35010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29030" stop="29218"/>
              <exon start="34616" stop="35029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29048" stop="29218"/>
              <exon start="34616" stop="34977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34644" stop="35098"/>
              <exon start="35350" stop="35364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34735" stop="35098"/>
              <exon start="35350" stop="35364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGCAAGCAAAGTCGGAGACGCAGTAAGCAAAGCGCTGAACAGCAACAAAGTGTTGAATGTAGTGTTAATGAGTGCATTTGGATTGCTATGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG : GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAA : GAACTAGAACAAAAA</gDNA_template>
            <first_frame> L  A  S  K  V  G  D  A  V  S  K  A  L  N  S  N  K  V  L  N  V  V  L  M  S  A  F  G  L  L  C  M  R  S  V  Q  Q  Q  K  N  M  E  V  L  E  A  E  K  D  S  L  L  K  S  N  K  A  M  K  K  D  M  W  D  W  K  Q  Q  L  F  A  E  A  E  L  P  N  P  L  I  P  L  S  K  I  K  A  I  Y  G  D  V  Q  T  T  T  S  T  S   : G  G  D  A  H  N  G  D  G  K  S  P  A  G  V  F  V  I  *  K  P  L  L  *  L  V  H  D  E  A  S  C  F  L  A  K  *  Q  A  A  T  Q  I  C  E  I  S  C  F  S  *  *  N  G  K  L  G  K  V  V  *  F  *  V  F  S  W  N  L  V  I  Y  S  C  F  F  P  S  P  L  S  C  S  P  L  G  G  R  D  P  S  L  I  C  G  D  T  A  P  L  I  Y  F  C  C  W  D  Y  A  M  S  *  V  S  L  S  I  N  Q  I  F  M  S  S  C  I  W  M  F  D  *  F  H  F  S  L  G  M  G  V  L  S  K  I  T  M  *  P  A  F  L  S  H  C  E  D  M  I  F  F  I   : R  T  R  T  K  </first_frame>
            <second_frame>  W  Q  A  K  S  E  T  Q  *  A  K  R  *  T  A  T  K  C  *  M  *  C  *  *  V  H  L  D  C  Y  V  *  D  Q  C  S  N  R  R  I  W  K  F  L  K  Q  K  R  T  L  C  S  N  L  I  K  L  *  R  R  I  C  G  I  G  S  S  S  F  L  L  K  L  S  Y  P  I  H  L  F  H  S  L  R  L  K  P  F  M  E  T  F  K  P  P  H  R  L  L  :  V  E  M  L  I  T  E  M  E  N  H  L  Q  E  Y  L  L  S  E  S  H  C  C  S  L  F  M  T  K  Q  V  V  F  W  Q  N  N  K  R  P  L  R  S  V  K  Y  H  A  S  V  S  R  M  G  S  L  G  K  W  C  N  S  E  F  S  L  G  T  *  *  F  T  V  V  F  S  L  L  L  S  H  V  V  R  *  E  V  E  I  Q  V  *  F  V  V  T  L  H  H  L  S  T  F  V  A  G  T  M  P  *  A  E  F  H  Y  L  S  T  K  Y  L  *  V  H  A  F  G  C  L  I  D  S  T  S  V  *  A  W  V  F  S  A  R  *  Q  C  N  Q  L  F  L  V  T  V  K  I  *  Y  F  L  *  :  E  L  E  Q  K </second_frame>
            <third_frame>   G  K  Q  S  R  R  R  S  K  Q  S  A  E  Q  Q  Q  S  V  E  C  S  V  N  E  C  I  W  I  A  M  Y  E  I  S  A  A  T  E  E  Y  G  S  S  *  S  R  K  G  L  F  A  Q  I  *  *  S  Y  E  E  G  Y  V  G  L  E  A  A  A  F  C  *  S  *  V  T  Q  S  T  Y  S  T  L  *  D  *  S  H  L  W  R  R  S  N  H  H  I  D  F  W :   W  R  C  S  *  R  R  W  K  I  T  C  R  S  I  C  Y  L  K  A  I  V  V  A  C  S  *  R  S  K  L  F  S  G  K  I  T  S  G  H  S  D  L  *  N  I  M  L  Q  L  V  E  W  E  A  W  E  S  G  V  I  L  S  F  L  L  E  L  S  D  L  Q  L  F  F  P  F  S  S  L  M  *  S  V  R  R  S  R  S  K  F  N  L  W  *  H  C  T  T  Y  L  L  L  L  L  G  L  C  H  E  L  S  F  T  I  Y  Q  P  N  I  Y  E  F  M  H  L  D  V  *  L  I  P  L  Q  F  R  H  G  C  S  Q  Q  D  N  N  V  T  S  F  S  *  S  L  *  R  Y  D  I  F  Y  K :   N  *  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28921" stop="29218"/>
                    <exon start="34616" stop="34671"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LASKVGDAVSKALNSNKVLNVVLMSAFGLLCMRSVQQQKNMEVLEAEKDSLLKSNKAMKKDMWDWKQQLFAEAELPNPLIPLSKIKAIYGDVQTTTSTSGGDAHNGDGKSPAGVFVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29096" stop="29218"/>
                    <exon start="34616" stop="34822"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRICGIGSSSFLLKLSYPIHLFHSLRLKPFMETFKPPHRLLVEMLITEMENHLQEYLLSESHCCSLFMTKQVVFWQNNKRPLRSVKYHASVSRMGSLGKWCNSEFSLGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28921" e_stop="29218"/>
            <exon e_start="34616" e_stop="35100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.941" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28921" e_stop="29218" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.941">
            <gDNA_intron_boundary i_start="29219" i_stop="34615" i_length="5397"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="34616" e_stop="35100" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28921" stop="29218"/>
              <exon start="34616" stop="35010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29011" stop="29218"/>
              <exon start="34616" stop="35100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29030" stop="29218"/>
              <exon start="34616" stop="35029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29048" stop="29218"/>
              <exon start="34616" stop="34977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGCAAGCAAAGTCGGAGACGCAGTAAGCAAAGCGCTGAACAGCAACAAAGTGTTGAATGTAGTGTTAATGAGTGCATTTGGATTGCTATGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG : GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAACT</gDNA_template>
            <first_frame> L  A  S  K  V  G  D  A  V  S  K  A  L  N  S  N  K  V  L  N  V  V  L  M  S  A  F  G  L  L  C  M  R  S  V  Q  Q  Q  K  N  M  E  V  L  E  A  E  K  D  S  L  L  K  S  N  K  A  M  K  K  D  M  W  D  W  K  Q  Q  L  F  A  E  A  E  L  P  N  P  L  I  P  L  S  K  I  K  A  I  Y  G  D  V  Q  T  T  T  S  T  S   : G  G  D  A  H  N  G  D  G  K  S  P  A  G  V  F  V  I  *  K  P  L  L  *  L  V  H  D  E  A  S  C  F  L  A  K  *  Q  A  A  T  Q  I  C  E  I  S  C  F  S  *  *  N  G  K  L  G  K  V  V  *  F  *  V  F  S  W  N  L  V  I  Y  S  C  F  F  P  S  P  L  S  C  S  P  L  G  G  R  D  P  S  L  I  C  G  D  T  A  P  L  I  Y  F  C  C  W  D  Y  A  M  S  *  V  S  L  S  I  N  Q  I  F  M  S  S  C  I  W  M  F  D  *  F  H  F  S  L  G  M  G  V  L  S  K  I  T  M  *  P  A  F  L  S  H  C  E  D  M  I  F  F  I  T </first_frame>
            <second_frame>  W  Q  A  K  S  E  T  Q  *  A  K  R  *  T  A  T  K  C  *  M  *  C  *  *  V  H  L  D  C  Y  V  *  D  Q  C  S  N  R  R  I  W  K  F  L  K  Q  K  R  T  L  C  S  N  L  I  K  L  *  R  R  I  C  G  I  G  S  S  S  F  L  L  K  L  S  Y  P  I  H  L  F  H  S  L  R  L  K  P  F  M  E  T  F  K  P  P  H  R  L  L  :  V  E  M  L  I  T  E  M  E  N  H  L  Q  E  Y  L  L  S  E  S  H  C  C  S  L  F  M  T  K  Q  V  V  F  W  Q  N  N  K  R  P  L  R  S  V  K  Y  H  A  S  V  S  R  M  G  S  L  G  K  W  C  N  S  E  F  S  L  G  T  *  *  F  T  V  V  F  S  L  L  L  S  H  V  V  R  *  E  V  E  I  Q  V  *  F  V  V  T  L  H  H  L  S  T  F  V  A  G  T  M  P  *  A  E  F  H  Y  L  S  T  K  Y  L  *  V  H  A  F  G  C  L  I  D  S  T  S  V  *  A  W  V  F  S  A  R  *  Q  C  N  Q  L  F  L  V  T  V  K  I  *  Y  F  L  *   </second_frame>
            <third_frame>   G  K  Q  S  R  R  R  S  K  Q  S  A  E  Q  Q  Q  S  V  E  C  S  V  N  E  C  I  W  I  A  M  Y  E  I  S  A  A  T  E  E  Y  G  S  S  *  S  R  K  G  L  F  A  Q  I  *  *  S  Y  E  E  G  Y  V  G  L  E  A  A  A  F  C  *  S  *  V  T  Q  S  T  Y  S  T  L  *  D  *  S  H  L  W  R  R  S  N  H  H  I  D  F  W :   W  R  C  S  *  R  R  W  K  I  T  C  R  S  I  C  Y  L  K  A  I  V  V  A  C  S  *  R  S  K  L  F  S  G  K  I  T  S  G  H  S  D  L  *  N  I  M  L  Q  L  V  E  W  E  A  W  E  S  G  V  I  L  S  F  L  L  E  L  S  D  L  Q  L  F  F  P  F  S  S  L  M  *  S  V  R  R  S  R  S  K  F  N  L  W  *  H  C  T  T  Y  L  L  L  L  L  G  L  C  H  E  L  S  F  T  I  Y  Q  P  N  I  Y  E  F  M  H  L  D  V  *  L  I  P  L  Q  F  R  H  G  C  S  Q  Q  D  N  N  V  T  S  F  S  *  S  L  *  R  Y  D  I  F  Y  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28921" stop="29218"/>
                    <exon start="34616" stop="34671"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LASKVGDAVSKALNSNKVLNVVLMSAFGLLCMRSVQQQKNMEVLEAEKDSLLKSNKAMKKDMWDWKQQLFAEAELPNPLIPLSKIKAIYGDVQTTTSTSGGDAHNGDGKSPAGVFVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29096" stop="29218"/>
                    <exon start="34616" stop="34822"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRICGIGSSSFLLKLSYPIHLFHSLRLKPFMETFKPPHRLLVEMLITEMENHLQEYLLSESHCCSLFMTKQVVFWQNNKRPLRSVKYHASVSRMGSLGKWCNSEFSLGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35594" PGL_stop="35218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35594" e_stop="35218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="35594" e_stop="35218" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35594" stop="35218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35491" stop="35218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTGGGTGTACATTTTATGGTTATGTGAGGCACATCCTATCACAACATGCTCGAGAGTCTCCTCGTACGCCAGAGAACAAGATGGAATCTGTTCCTCTAATACATGAGAAAGAACAAGACCAAAGATAACCCCTTTAAAATCACAGATGAAGAGGTTTCATCAATTTTGCAGAAGATAGATTATTCGACCCCTCACTTCTCCCCTTATCAGTGCTTTATTTACTCAAATTTTTGTTCTAGTTCCTGCATATAAGGATGTCATTTGATAGGTATTTACAACAGGTTAACATAACCTCATTTCATTGAAAAGATTATTTGATGGTATTTTTAAAGTATAATAGTTACACTTGTATGTTGTAAATATTGTAGCTATGT</gDNA_template>
            <first_frame> L  L  G  V  H  F  M  V  M  *  G  T  S  Y  H  N  M  L  E  S  L  L  V  R  Q  R  T  R  W  N  L  F  L  *  Y  M  R  K  N  K  T  K  D  N  P  F  K  I  T  D  E  E  V  S  S  I  L  Q  K  I  D  Y  S  T  P  H  F  S  P  Y  Q  C  F  I  Y  S  N  F  C  S  S  S  C  I  *  G  C  H  L  I  G  I  Y  N  R  L  T  *  P  H  F  I  E  K  I  I  *  W  Y  F  *  S  I  I  V  T  L  V  C  C  K  Y  C  S  Y   </first_frame>
            <second_frame>  C  W  V  Y  I  L  W  L  C  E  A  H  P  I  T  T  C  S  R  V  S  S  Y  A  R  E  Q  D  G  I  C  S  S  N  T  *  E  R  T  R  P  K  I  T  P  L  K  S  Q  M  K  R  F  H  Q  F  C  R  R  *  I  I  R  P  L  T  S  P  L  I  S  A  L  F  T  Q  I  F  V  L  V  P  A  Y  K  D  V  I  *  *  V  F  T  T  G  *  H  N  L  I  S  L  K  R  L  F  D  G  I  F  K  V  *  *  L  H  L  Y  V  V  N  I  V  A  M  </second_frame>
            <third_frame>   V  G  C  T  F  Y  G  Y  V  R  H  I  L  S  Q  H  A  R  E  S  P  R  T  P  E  N  K  M  E  S  V  P  L  I  H  E  K  E  Q  D  Q  R  *  P  L  *  N  H  R  *  R  G  F  I  N  F  A  E  D  R  L  F  D  P  S  L  L  P  L  S  V  L  Y  L  L  K  F  L  F  *  F  L  H  I  R  M  S  F  D  R  Y  L  Q  Q  V  N  I  T  S  F  H  *  K  D  Y  L  M  V  F  L  K  Y  N  S  Y  T  C  M  L  *  I  L  *  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0062I24.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="37873" PGL_stop="35849"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37873" e_stop="37732"/>
            <exon e_start="36773" e_stop="36524"/>
            <exon e_start="36443" e_stop="36236"/>
            <exon e_start="36052" e_stop="35849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.542" e_score="0.972"/>
          <exon-intron don_prob="0.914" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.993" acc_prob="0.947" e_score="0.986"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="37873" e_stop="37732" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.542">
            <gDNA_intron_boundary i_start="37731" i_stop="36774" i_length="958"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="36773" e_stop="36524" e_length="250"/>
          </exon>
          <intron i_serial="2" don_prob="0.914" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36523" i_stop="36444" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="36443" e_stop="36236" e_length="208"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.947">
            <gDNA_intron_boundary i_start="36235" i_stop="36053" i_length="183"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="36052" e_stop="35849" e_length="204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37873" stop="37732"/>
              <exon start="36773" stop="36524"/>
              <exon start="36443" stop="36236"/>
              <exon start="36052" stop="35849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37843" stop="37732"/>
              <exon start="36773" stop="36716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360142" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCCTACAGGCGTGCCTATAGTTAGAGAAAAATGGAGGAGAATGTATTGTGCCAATGGAGTGTTGTTAGATCCATTTTTGCTATTCTTCAATGGTGGGGTTTCAATGTTGCTGTTATTATCATGAACAAATGGATCTTTCAG : AAATTGGTGTTTAAATTTCCTTTGACAGTATCTTGCGTGCACTTCATATGCTCAGCTATTGGTGCATACCTGGTAATTAAAGTGCTGAAACTTAAACCACTCATCGTGGTCGAACCCACAGATCAGTGGAGAAGAATTTTTCCGATGTCATTTGTGTTTTGTATCAACATAGTCTTGGGGAATGTAAGTTTGCGATATATTCCTGTCTCTTTTATGCAGACCGTAAAGTCATTTACTCCTGCTACAACAG : TGATTTTGCAGTGGCTAGTTTGGAGGAAGAGCTTTGAATGGAGGATCTGGACTTCCTTGATTCCCATTGTTGGAGGAATTCTTCTTACTTCTATTACTGAGCTCAGTTTCAACACTTTAGGATTTTGCGCTGCTTTGTTTGGTTGCCTTGCTACTTCTACAAAAACTATTCTAGCAGAGTCGTTGTTGCATGGGTACAAATTTGACAG : TATAAACACAGTATACTACATGGCTCCCTATGCAACTATGATACTGGCTCTGCCGTCTTTACTCTTTGAAGGAGCTGGGGTTGTAGAATGGTTATACACTTTCCCTTCAGTCGTTCCATCCATGCTTCTTATTTTTCTCTCCGGAGTGCTAGCTTTCTGCCTTAACTTCTCTATCTTCTATGTTATCCACTCCACGACTGCTGT</gDNA_template>
            <first_frame> A  L  Q  A  C  L  *  L  E  K  N  G  G  E  C  I  V  P  M  E  C  C  *  I  H  F  C  Y  S  S  M  V  G  F  Q  C  C  C  Y  Y  H  E  Q  M  D  L  S   : E  I  G  V  *  I  S  F  D  S  I  L  R  A  L  H  M  L  S  Y  W  C  I  P  G  N  *  S  A  E  T  *  T  T  H  R  G  R  T  H  R  S  V  E  K  N  F  S  D  V  I  C  V  L  Y  Q  H  S  L  G  E  C  K  F  A  I  Y  S  C  L  F  Y  A  D  R  K  V  I  Y  S  C  Y  N  S :   D  F  A  V  A  S  L  E  E  E  L  *  M  E  D  L  D  F  L  D  S  H  C  W  R  N  S  S  Y  F  Y  Y  *  A  Q  F  Q  H  F  R  I  L  R  C  F  V  W  L  P  C  Y  F  Y  K  N  Y  S  S  R  V  V  V  A  W  V  Q  I  *  Q  :  Y  K  H  S  I  L  H  G  S  L  C  N  Y  D  T  G  S  A  V  F  T  L  *  R  S  W  G  C  R  M  V  I  H  F  P  F  S  R  S  I  H  A  S  Y  F  S  L  R  S  A  S  F  L  P  *  L  L  Y  L  L  C  Y  P  L  H  D  C  C </first_frame>
            <second_frame>  P  Y  R  R  A  Y  S  *  R  K  M  E  E  N  V  L  C  Q  W  S  V  V  R  S  I  F  A  I  L  Q  W  W  G  F  N  V  A  V  I  I  M  N  K  W  I  F  Q  :  K  L  V  F  K  F  P  L  T  V  S  C  V  H  F  I  C  S  A  I  G  A  Y  L  V  I  K  V  L  K  L  K  P  L  I  V  V  E  P  T  D  Q  W  R  R  I  F  P  M  S  F  V  F  C  I  N  I  V  L  G  N  V  S  L  R  Y  I  P  V  S  F  M  Q  T  V  K  S  F  T  P  A  T  T   : V  I  L  Q  W  L  V  W  R  K  S  F  E  W  R  I  W  T  S  L  I  P  I  V  G  G  I  L  L  T  S  I  T  E  L  S  F  N  T  L  G  F  C  A  A  L  F  G  C  L  A  T  S  T  K  T  I  L  A  E  S  L  L  H  G  Y  K  F  D  S :   I  N  T  V  Y  Y  M  A  P  Y  A  T  M  I  L  A  L  P  S  L  L  F  E  G  A  G  V  V  E  W  L  Y  T  F  P  S  V  V  P  S  M  L  L  I  F  L  S  G  V  L  A  F  C  L  N  F  S  I  F  Y  V  I  H  S  T  T  A   </second_frame>
            <third_frame>   P  T  G  V  P  I  V  R  E  K  W  R  R  M  Y  C  A  N  G  V  L  L  D  P  F  L  L  F  F  N  G  G  V  S  M  L  L  L  L  S  *  T  N  G  S  F  R :   N  W  C  L  N  F  L  *  Q  Y  L  A  C  T  S  Y  A  Q  L  L  V  H  T  W  *  L  K  C  *  N  L  N  H  S  S  W  S  N  P  Q  I  S  G  E  E  F  F  R  C  H  L  C  F  V  S  T  *  S  W  G  M  *  V  C  D  I  F  L  S  L  L  C  R  P  *  S  H  L  L  L  L  Q  Q  :  *  F  C  S  G  *  F  G  G  R  A  L  N  G  G  S  G  L  P  *  F  P  L  L  E  E  F  F  L  L  L  L  L  S  S  V  S  T  L  *  D  F  A  L  L  C  L  V  A  L  L  L  L  Q  K  L  F  *  Q  S  R  C  C  M  G  T  N  L  T   : V  *  T  Q  Y  T  T  W  L  P  M  Q  L  *  Y  W  L  C  R  L  Y  S  L  K  E  L  G  L  *  N  G  Y  T  L  S  L  Q  S  F  H  P  C  F  L  F  F  S  P  E  C  *  L  S  A  L  T  S  L  S  S  M  L  S  T  P  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37848" stop="37732"/>
                    <exon start="36773" stop="36524"/>
                    <exon start="36443" stop="36236"/>
                    <exon start="36052" stop="35851"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKMEENVLCQWSVVRSIFAILQWWGFNVAVIIMNKWIFQKLVFKFPLTVSCVHFICSAIGAYLVIKVLKLKPLIVVEPTDQWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTVKSFTPATTVILQWLVWRKSFEWRIWTSLIPIVGGILLTSITELSFNTLGFCAALFGCLATSTKTILAESLLHGYKFDSINTVYYMAPYATMILALPSLLFEGAGVVEWLYTFPSVVPSMLLIFLSGVLAFCLNFSIFYVIHSTTA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="42668" PGL_stop="45395"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42668" e_stop="43510"/>
            <exon e_start="44893" e_stop="45010"/>
            <exon e_start="45102" e_stop="45263"/>
            <exon e_start="45366" e_stop="45395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="0.999"/>
          <exon-intron don_prob="0.895" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.986" e_score="0.969"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="42668" e_stop="43510" e_length="843"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="43511" i_stop="44892" i_length="1382"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44893" e_stop="45010" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.895" acc_prob="0.989">
            <gDNA_intron_boundary i_start="45011" i_stop="45101" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="45102" e_stop="45263" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.986">
            <gDNA_intron_boundary i_start="45264" i_stop="45365" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.900">
            <gDNA_exon_boundary e_start="45366" e_stop="45395" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42668" stop="43090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="43462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42743" stop="43510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42771" stop="43380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42852" stop="43346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43146" stop="43510"/>
              <exon start="44893" stop="45010"/>
              <exon start="45102" stop="45263"/>
              <exon start="45366" stop="45395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43171" stop="43510"/>
              <exon start="44893" stop="45010"/>
              <exon start="45102" stop="45189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43343" stop="43510"/>
              <exon start="44893" stop="44964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCATCACTGTCACTCCGTACCCCTCCCCCACCATTTTCAAGAAAACCCCTTTACTCTTTCAAACCCCAAATCTCCCATTTTGCTCTCTCCACTTGCAGAGACAAGAATTCATTTTTTTTTGTGTGTTTCTGCAACTTCTTGCTGTAGAACCAAGAATTGAGCTTAAAGGGCAAAAGGGTATCTGAGAAAAATGCTACCTTTCTTGTTCCTCTTGTTGAGCTTTAGTTTCATCGATCCCACAACTTCAAAATCTACTATTGAGCCATGTTCCAACTCTGATACTTGTTCTTCCCTTCTTGGCTACTCTCTTTATACTGACCTTAAGGTTTCTGAAGTGGCTTCACTCTTTCAAACAGACCCAATATCTCTTCTTACTACTAATGCTATTGATATCTCATATCCAGATGTTGAAAACCACATACTTCCAGCTAAACTGTTCCTTAAGGTTCCTGTTACTTGTTCTTGTGTTGATGGGATCTTTAAGTCTGCTTTTGTTCATTACAAGACTAGGCCTTCTGATACTCTGTCTTTGATTGCTGACATAATATATGGGGGTCTTGTTTCTGCTGACCAGATCAAGGAAGGAAACCCCAATGCTGTTGGTCCTGACCCTTCAGTGTTAAATGTTGGGACTAATCTTTGGATTCCTCTTCCTTGCACTTGCTTTAATGGGACTGACAATAATCTTCCTGCTATTTATATGTCATATGTTGTTAGAGCTGTTGATACTCTTGCAGGGATTGCTGCTAGGTACTCTACCACTCTTACTGACCTTATGAATGTTAATGCTTTGGGAGGTCCTTCTATTAAGGAGGGTGACATTCTTTCCATTCCTTTGTCTG : CTTGTACGTCTAGCTTCCCAAGATCTGCCTCGGATTATGGCTTATCTGTTGCGAATGGGAGCTATTCTATTACAGCTAGCCACTGTGTGCAATGCAGTTGTGGACCAGGGGGTCGGAA : TTTGTACTGCATGCCAGCTTCTTTAGCAGTTTCTTGCTCAAGCATGCAGTGCAAGAACAGCAATCTCATGCTCGGAAATGTTACCATACAACAGACTGGTGGTGGTTGCAATGTGACTTCTTGCAATTACGGTGGCCTTGTTAATGGAACCATCATCACTAC : ATTATCCACATCGCTTCAACCTCGATGCCC</gDNA_template>
            <first_frame> L  I  T  V  T  P  Y  P  S  P  T  I  F  K  K  T  P  L  L  F  Q  T  P  N  L  P  F  C  S  L  H  L  Q  R  Q  E  F  I  F  F  C  V  F  L  Q  L  L  A  V  E  P  R  I  E  L  K  G  Q  K  G  I  *  E  K  C  Y  L  S  C  S  S  C  *  A  L  V  S  S  I  P  Q  L  Q  N  L  L  L  S  H  V  P  T  L  I  L  V  L  P  F  L  A  T  L  F  I  L  T  L  R  F  L  K  W  L  H  S  F  K  Q  T  Q  Y  L  F  L  L  L  M  L  L  I  S  H  I  Q  M  L  K  T  T  Y  F  Q  L  N  C  S  L  R  F  L  L  L  V  L  V  L  M  G  S  L  S  L  L  L  F  I  T  R  L  G  L  L  I  L  C  L  *  L  L  T  *  Y  M  G  V  L  F  L  L  T  R  S  R  K  E  T  P  M  L  L  V  L  T  L  Q  C  *  M  L  G  L  I  F  G  F  L  F  L  A  L  A  L  M  G  L  T  I  I  F  L  L  F  I  C  H  M  L  L  E  L  L  I  L  L  Q  G  L  L  L  G  T  L  P  L  L  L  T  L  *  M  L  M  L  W  E  V  L  L  L  R  R  V  T  F  F  P  F  L  C  L  :  L  V  R  L  A  S  Q  D  L  P  R  I  M  A  Y  L  L  R  M  G  A  I  L  L  Q  L  A  T  V  C  N  A  V  V  D  Q  G  V  G   : I  C  T  A  C  Q  L  L  *  Q  F  L  A  Q  A  C  S  A  R  T  A  I  S  C  S  E  M  L  P  Y  N  R  L  V  V  V  A  M  *  L  L  A  I  T  V  A  L  L  M  E  P  S  S  L   : H  Y  P  H  R  F  N  L  D  A  </first_frame>
            <second_frame>  S  S  L  S  L  R  T  P  P  P  P  F  S  R  K  P  L  Y  S  F  K  P  Q  I  S  H  F  A  L  S  T  C  R  D  K  N  S  F  F  F  V  C  F  C  N  F  L  L  *  N  Q  E  L  S  L  K  G  K  R  V  S  E  K  N  A  T  F  L  V  P  L  V  E  L  *  F  H  R  S  H  N  F  K  I  Y  Y  *  A  M  F  Q  L  *  Y  L  F  F  P  S  W  L  L  S  L  Y  *  P  *  G  F  *  S  G  F  T  L  S  N  R  P  N  I  S  S  Y  Y  *  C  Y  *  Y  L  I  S  R  C  *  K  P  H  T  S  S  *  T  V  P  *  G  S  C  Y  L  F  L  C  *  W  D  L  *  V  C  F  C  S  L  Q  D  *  A  F  *  Y  S  V  F  D  C  *  H  N  I  W  G  S  C  F  C  *  P  D  Q  G  R  K  P  Q  C  C  W  S  *  P  F  S  V  K  C  W  D  *  S  L  D  S  S  S  L  H  L  L  *  W  D  *  Q  *  S  S  C  Y  L  Y  V  I  C  C  *  S  C  *  Y  S  C  R  D  C  C  *  V  L  Y  H  S  Y  *  P  Y  E  C  *  C  F  G  R  S  F  Y  *  G  G  *  H  S  F  H  S  F  V  C :   L  Y  V  *  L  P  K  I  C  L  G  L  W  L  I  C  C  E  W  E  L  F  Y  Y  S  *  P  L  C  A  M  Q  L  W  T  R  G  S  E  :  F  V  L  H  A  S  F  F  S  S  F  L  L  K  H  A  V  Q  E  Q  Q  S  H  A  R  K  C  Y  H  T  T  D  W  W  W  L  Q  C  D  F  L  Q  L  R  W  P  C  *  W  N  H  H  H  Y  :  I  I  H  I  A  S  T  S  M  P </second_frame>
            <third_frame>   H  H  C  H  S  V  P  L  P  H  H  F  Q  E  N  P  F  T  L  S  N  P  K  S  P  I  L  L  S  P  L  A  E  T  R  I  H  F  F  L  C  V  S  A  T  S  C  C  R  T  K  N  *  A  *  R  A  K  G  Y  L  R  K  M  L  P  F  L  F  L  L  L  S  F  S  F  I  D  P  T  T  S  K  S  T  I  E  P  C  S  N  S  D  T  C  S  S  L  L  G  Y  S  L  Y  T  D  L  K  V  S  E  V  A  S  L  F  Q  T  D  P  I  S  L  L  T  T  N  A  I  D  I  S  Y  P  D  V  E  N  H  I  L  P  A  K  L  F  L  K  V  P  V  T  C  S  C  V  D  G  I  F  K  S  A  F  V  H  Y  K  T  R  P  S  D  T  L  S  L  I  A  D  I  I  Y  G  G  L  V  S  A  D  Q  I  K  E  G  N  P  N  A  V  G  P  D  P  S  V  L  N  V  G  T  N  L  W  I  P  L  P  C  T  C  F  N  G  T  D  N  N  L  P  A  I  Y  M  S  Y  V  V  R  A  V  D  T  L  A  G  I  A  A  R  Y  S  T  T  L  T  D  L  M  N  V  N  A  L  G  G  P  S  I  K  E  G  D  I  L  S  I  P  L  S   : A  C  T  S  S  F  P  R  S  A  S  D  Y  G  L  S  V  A  N  G  S  Y  S  I  T  A  S  H  C  V  Q  C  S  C  G  P  G  G  R  N :   L  Y  C  M  P  A  S  L  A  V  S  C  S  S  M  Q  C  K  N  S  N  L  M  L  G  N  V  T  I  Q  Q  T  G  G  G  C  N  V  T  S  C  N  Y  G  G  L  V  N  G  T  I  I  T  T :   L  S  T  S  L  Q  P  R  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42835" stop="43510"/>
                    <exon start="44893" stop="45010"/>
                    <exon start="45102" stop="45263"/>
                    <exon start="45366" stop="45393"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAKGYLRKMLPFLFLLLSFSFIDPTTSKSTIEPCSNSDTCSSLLGYSLYTDLKVSEVASLFQTDPISLLTTNAIDISYPDVENHILPAKLFLKVPVTCSCVDGIFKSAFVHYKTRPSDTLSLIADIIYGGLVSADQIKEGNPNAVGPDPSVLNVGTNLWIPLPCTCFNGTDNNLPAIYMSYVVRAVDTLAGIAARYSTTLTDLMNVNALGGPSIKEGDILSIPLSACTSSFPRSASDYGLSVANGSYSITASHCVQCSCGPGGRNLYCMPASLAVSCSSMQCKNSNLMLGNVTIQQTGGGCNVTSCNYGGLVNGTIITTLSTSLQPRC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="47527" PGL_stop="52679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47527" e_stop="47758"/>
            <exon e_start="48349" e_stop="48505"/>
            <exon e_start="50081" e_stop="50273"/>
            <exon e_start="50661" e_stop="51955"/>
            <exon e_start="52069" e_stop="52679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.056" acc_prob="0.951" e_score="0.996"/>
          <exon-intron don_prob="0.962" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="47527" e_stop="47758" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.056" acc_prob="0.951">
            <gDNA_intron_boundary i_start="47759" i_stop="48348" i_length="590"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48349" e_stop="48505" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.970">
            <gDNA_intron_boundary i_start="48506" i_stop="50080" i_length="1575"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50081" e_stop="50273" e_length="193"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50274" i_stop="50660" i_length="387"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50661" e_stop="51955" e_length="1295"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.948">
            <gDNA_intron_boundary i_start="51956" i_stop="52068" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52069" e_stop="52679" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47527" stop="47758"/>
              <exon start="48349" stop="48505"/>
              <exon start="50081" stop="50273"/>
              <exon start="50661" stop="50889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47610" stop="47758"/>
              <exon start="48349" stop="48505"/>
              <exon start="50081" stop="50273"/>
              <exon start="50661" stop="51012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48392" stop="48505"/>
              <exon start="50081" stop="50273"/>
              <exon start="50661" stop="50973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50221" stop="50273"/>
              <exon start="50661" stop="51955"/>
              <exon start="52069" stop="52626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51413" stop="51955"/>
              <exon start="52069" stop="52157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51414" stop="51955"/>
              <exon start="52069" stop="52156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52302" stop="52679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52380" stop="52679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCAAAAATCTCCCCAAAAAACAGCATATATTAAAAAAAGATTATATTTTTATGAGAAATTTGAATGAATAGAGGCTTCTTGCTTGTGGTTTTTGGATATAATTGAGTAGTTAGTACTTGTTCTCTGACAATTCACAGCACAGATCTTTGACTGTCTGAATTTGTTTATTGCTTCATCAATCTGAAATCTTGAAACCCCAATTCATCTGTTATGGCTTCTTTACAGTAAT : ATGGACATTGTACTATGAGCATTTAGGAGATTAAATGCTTATTGAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAGAGTTCTGGTTCTTTATCTTCATATTCGGAGAGATACTCCGATGAGCAG : GATGCACTAAAAGAATTTCCTGACCATGACAAACAGTCACCAGAGGTTACCTCAAAAGCTGCATTCGTTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAGAAGCTATCGCAG : GTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAGCAACTAGATGCGGCTGTGCAGCAAAACTTGACTTTGGAAGTTCGTGTCAGTCATCTCGACGGTGCACTCAAGGAATGTGTCAGGCAGTTGAGACAAGCAAGAGATGAGCAAGAGAAAATGATTCAAGACGCTATGGCAGAAAAAAATGAAATGGAATCTGAAAAAACTGCACTTGAGAAACAGCTACTTAAGCTCCAGACACAAGTGGAGGCTGGTAAAGCTGAAATGCCTACTTCTACTGATCCTGATATCCTTGTCAGGCTTAAGTATCTAGAGAAAGAGAATGCAGCTCTCAAAATTGAACTTGTCTCTTGTTCAGAAGTGTTGGAAATTAGGACTATTGAGAGGGATTTGAGTACTCAAGCAGCAGAAACTGCCAGCAAGCAGCAGCTGGAAAGCATAAAAAAACTGACCAAACTTGAAGTTGAGTGTCGAAAGCTACAGGCCATGGCTCGCAAATCATCCCCATTCAATGATCAACGCTCCTCTGCTGTTTCATCTTTCTATGTGGACTCTGTCACCGATAGCCAGTCTGACAGTGGAGAGCGGTTAAACACAGTTGACAATGATGCCCTCAAAATGAGTAAACTGGAAACAAGAGAATATGAACCAAGTTGCTCAAATTCATGGGCTTCAGCACTCATTGCTGAGCTTGATCAATTTAAGAATGAAAAGGCCATGCCTAAAACTCTTGCTGCCTGTTCTATAGAAATCGATATGATGGATGATTTCTTGGAGATGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATACAATTCCATTTCACAAAGGGTGGTTGAATTAGAACAAAAGCTGGAGAAGATTGAAGCAGAGAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAGATGCCCTTAAAGTGTCCTCTTTGCAGCTTAAGGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAGACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACTTCTGGTTCAAATAGTGAATTGAAAATAAAACAG : GAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTCTAGAAGATTTCCTGACAGACACTGCAAATCTTCCTGGTGGAGGAGCAGTTGTTGCTAAAGCAGGAGGAGAACTATGGAAGTTGCATGTAAACGAGACATTTACCCCAAAACGTGATTCTGATCCTACCAAGGTTGAGGAGAATGTGAGTCATTCTACAAACGAAAATGAAGGGGAATCTCCAGCATCTTCATCTTCATCATCTACTTCATCCACTACTCAGGCTAGCACTGGCAAAAGCAAAAATGGCTTTGGGAAGTTGTTTTCTCGGAGTAAGAGTGGAGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGGAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTACACTGCTTTGGCTAATCTCCCTCTTTTTATTTAATCCATTTCAGTATATTTTT</gDNA_template>
            <first_frame> I  S  K  I  S  P  K  N  S  I  Y  *  K  K  I  I  F  L  *  E  I  *  M  N  R  G  F  L  L  V  V  F  G  Y  N  *  V  V  S  T  C  S  L  T  I  H  S  T  D  L  *  L  S  E  F  V  Y  C  F  I  N  L  K  S  *  N  P  N  S  S  V  M  A  S  L  Q  *   : Y  G  H  C  T  M  S  I  *  E  I  K  C  L  L  R  W  K  R  G  N  G  C  G  K  G  D  L  P  I  R  A  L  V  K  R  R  V  L  V  L  Y  L  H  I  R  R  D  T  P  M  S  R :   M  H  *  K  N  F  L  T  M  T  N  S  H  Q  R  L  P  Q  K  L  H  S  L  M  M  N  P  R  K  A  *  D  A  *  Q  R  N  Y  Q  L  L  L  L  M  L  A  P  K  K  T  *  L  S  S  M  L  K  L  P  K  K  L  S  Q  :  V  G  K  R  Q  K  M  K  L  Q  F  *  S  S  N  *  M  R  L  C  S  K  T  *  L  W  K  F  V  S  V  I  S  T  V  H  S  R  N  V  S  G  S  *  D  K  Q  E  M  S  K  R  K  *  F  K  T  L  W  Q  K  K  M  K  W  N  L  K  K  L  H  L  R  N  S  Y  L  S  S  R  H  K  W  R  L  V  K  L  K  C  L  L  L  L  I  L  I  S  L  S  G  L  S  I  *  R  K  R  M  Q  L  S  K  L  N  L  S  L  V  Q  K  C  W  K  L  G  L  L  R  G  I  *  V  L  K  Q  Q  K  L  P  A  S  S  S  W  K  A  *  K  N  *  P  N  L  K  L  S  V  E  S  Y  R  P  W  L  A  N  H  P  H  S  M  I  N  A  P  L  L  F  H  L  S  M  W  T  L  S  P  I  A  S  L  T  V  E  S  G  *  T  Q  L  T  M  M  P  S  K  *  V  N  W  K  Q  E  N  M  N  Q  V  A  Q  I  H  G  L  Q  H  S  L  L  S  L  I  N  L  R  M  K  R  P  C  L  K  L  L  L  P  V  L  *  K  S  I  *  W  M  I  S  W  R  W  S  N  L  L  H  Y  L  K  L  Q  T  R  H  L  Q  *  L  L  M  L  F  L  M  I  L  P  I  L  R  T  L  W  Q  Q  N  T  I  P  F  H  K  G  W  L  N  *  N  K  S  W  R  R  L  K  Q  R  K  L  N  W  R  M  L  S  T  R  V  K  M  P  L  K  C  P  L  C  S  L  R  K  L  K  P  G  W  K  G  C  R  R  S  *  M  W  *  M  S  Q  K  S  C  S  S  F  N  S  M  A  W  R  *  K  H  G  Q  C  L  *  I  L  I  L  *  R  R  K  L  K  K  K  N  L  C  H  Q  K  W  K  L  N  V  M  N  W  K  T  T  L  E  K  N  P  R  K  L  K  L  S  K  L  L  V  Q  I  V  N  *  K  *  N  R :   R  I  *  P  W  L  L  T  S  L  Q  N  A  R  K  Q  L  H  P  L  G  N  S  Y  N  P  *  L  L  *  K  I  S  *  Q  T  L  Q  I  F  L  V  E  E  Q  L  L  L  K  Q  E  E  N  Y  G  S  C  M  *  T  R  H  L  P  Q  N  V  I  L  I  L  P  R  L  R  R  M  *  V  I  L  Q  T  K  M  K  G  N  L  Q  H  L  H  L  H  H  L  L  H  P  L  L  R  L  A  L  A  K  A  K  M  A  L  G  S  C  F  L  G  V  R  V  E  F  Q  L  *  K  L  S  R  I  N  K  *  R  K  N  V  E  K  V  G  T  *  F  V  K  G  L  S  V  T  W  L  I  K  F  C  L  I  S  K  L  F  A  S  I  V  M  M  N  I  L  R  S  F  K  *  Q  *  T  P  *  I  Y  T  A  L  A  N  L  P  L  F  I  *  S  I  S  V  Y  F  </first_frame>
            <second_frame>  F  Q  K  S  P  Q  K  T  A  Y  I  K  K  R  L  Y  F  Y  E  K  F  E  *  I  E  A  S  C  L  W  F  L  D  I  I  E  *  L  V  L  V  L  *  Q  F  T  A  Q  I  F  D  C  L  N  L  F  I  A  S  S  I  *  N  L  E  T  P  I  H  L  L  W  L  L  Y  S  N  :  M  D  I  V  L  *  A  F  R  R  L  N  A  Y  *  D  G  K  E  E  M  V  V  E  K  E  T  F  R  *  E  P  W  *  N  G  E  F  W  F  F  I  F  I  F  G  E  I  L  R  *  A   : G  C  T  K  R  I  S  *  P  *  Q  T  V  T  R  G  Y  L  K  S  C  I  R  *  *  *  I  Q  G  K  L  E  M  L  D  R  E  I  I  S  C  S  C  *  C  *  R  Q  R  R  L  S  *  A  A  C  *  S  C  R  R  S  Y  R  R :   L  G  K  G  R  K  *  S  C  S  S  K  A  A  T  R  C  G  C  A  A  K  L  D  F  G  S  S  C  Q  S  S  R  R  C  T  Q  G  M  C  Q  A  V  E  T  S  K  R  *  A  R  E  N  D  S  R  R  Y  G  R  K  K  *  N  G  I  *  K  N  C  T  *  E  T  A  T  *  A  P  D  T  S  G  G  W  *  S  *  N  A  Y  F  Y  *  S  *  Y  P  C  Q  A  *  V  S  R  E  R  E  C  S  S  Q  N  *  T  C  L  L  F  R  S  V  G  N  *  D  Y  *  E  G  F  E  Y  S  S  S  R  N  C  Q  Q  A  A  A  G  K  H  K  K  T  D  Q  T  *  S  *  V  S  K  A  T  G  H  G  S  Q  I  I  P  I  Q  *  S  T  L  L  C  C  F  I  F  L  C  G  L  C  H  R  *  P  V  *  Q  W  R  A  V  K  H  S  *  Q  *  C  P  Q  N  E  *  T  G  N  K  R  I  *  T  K  L  L  K  F  M  G  F  S  T  H  C  *  A  *  S  I  *  E  *  K  G  H  A  *  N  S  C  C  L  F  Y  R  N  R  Y  D  G  *  F  L  G  D  G  A  T  C  C  I  I  *  N  C  K  Q  D  T  F  S  N  F  *  C  C  S  S  *  F  S  Q  Y  *  E  P  F  G  S  R  I  Q  F  H  F  T  K  G  G  *  I  R  T  K  A  G  E  D  *  S  R  E  S  *  T  G  E  C  F  Q  R  E  S  R  C  P  *  S  V  L  F  A  A  *  G  N  S  N  Q  V  G  R  A  A  E  G  A  R  C  G  K  *  V  K  R  V  A  R  V  S  T  L  W  H  G  G  R  S  T  D  N  V  C  K  Y  *  F  F  E  D  G  S  *  K  R  K  I  F  V  I  R  N  G  S  *  M  S  *  I  G  K  R  P  *  K  K  I  P  G  S  *  S  S  A  N  F  W  F  K  *  *  I  E  N  K  T   : G  G  F  S  R  G  C  *  Q  A  C  R  M  P  E  N  N  C  I  P  W  E  T  A  T  I  P  S  Y  S  R  R  F  P  D  R  H  C  K  S  S  W  W  R  S  S  C  C  *  S  R  R  R  T  M  E  V  A  C  K  R  D  I  Y  P  K  T  *  F  *  S  Y  Q  G  *  G  E  C  E  S  F  Y  K  R  K  *  R  G  I  S  S  I  F  I  F  I  I  Y  F  I  H  Y  S  G  *  H  W  Q  K  Q  K  W  L  W  E  V  V  F  S  E  *  E  W  S  S  N  S  K  S  Y  R  G  *  I  N  R  G  R  M  L  R  R  L  E  H  N  L  *  K  V  Y  Q  L  H  G  *  S  N  S  V  *  *  A  N  C  L  L  Q  *  L  *  *  I  S  *  E  A  S  N  S  N  R  H  L  E  F  T  L  L  W  L  I  S  L  F  L  F  N  P  F  Q  Y  I  F </second_frame>
            <third_frame>   F  K  N  L  P  K  K  Q  H  I  L  K  K  D  Y  I  F  M  R  N  L  N  E  *  R  L  L  A  C  G  F  W  I  *  L  S  S  *  Y  L  F  S  D  N  S  Q  H  R  S  L  T  V  *  I  C  L  L  L  H  Q  S  E  I  L  K  P  Q  F  I  C  Y  G  F  F  T  V  I :   W  T  L  Y  Y  E  H  L  G  D  *  M  L  I  E  M  E  K  R  K  W  L  W  K  R  R  P  S  D  K  S  P  G  E  T  E  S  S  G  S  L  S  S  Y  S  E  R  Y  S  D  E  Q  :  D  A  L  K  E  F  P  D  H  D  K  Q  S  P  E  V  T  S  K  A  A  F  V  D  D  E  S  K  E  S  L  R  C  L  T  E  K  L  S  A  A  L  V  N  V  S  A  K  E  D  L  V  K  Q  H  A  K  V  A  E  E  A  I  A   : G  W  E  K  A  E  N  E  V  A  V  L  K  Q  Q  L  D  A  A  V  Q  Q  N  L  T  L  E  V  R  V  S  H  L  D  G  A  L  K  E  C  V  R  Q  L  R  Q  A  R  D  E  Q  E  K  M  I  Q  D  A  M  A  E  K  N  E  M  E  S  E  K  T  A  L  E  K  Q  L  L  K  L  Q  T  Q  V  E  A  G  K  A  E  M  P  T  S  T  D  P  D  I  L  V  R  L  K  Y  L  E  K  E  N  A  A  L  K  I  E  L  V  S  C  S  E  V  L  E  I  R  T  I  E  R  D  L  S  T  Q  A  A  E  T  A  S  K  Q  Q  L  E  S  I  K  K  L  T  K  L  E  V  E  C  R  K  L  Q  A  M  A  R  K  S  S  P  F  N  D  Q  R  S  S  A  V  S  S  F  Y  V  D  S  V  T  D  S  Q  S  D  S  G  E  R  L  N  T  V  D  N  D  A  L  K  M  S  K  L  E  T  R  E  Y  E  P  S  C  S  N  S  W  A  S  A  L  I  A  E  L  D  Q  F  K  N  E  K  A  M  P  K  T  L  A  A  C  S  I  E  I  D  M  M  D  D  F  L  E  M  E  Q  L  A  A  L  S  E  T  A  N  K  T  P  S  V  T  S  D  A  V  P  H  D  S  P  N  I  E  N  P  L  A  A  E  Y  N  S  I  S  Q  R  V  V  E  L  E  Q  K  L  E  K  I  E  A  E  K  A  E  L  E  N  A  F  N  E  S  Q  D  A  L  K  V  S  S  L  Q  L  K  E  T  Q  T  R  L  E  G  L  Q  K  E  L  D  V  V  N  E  S  K  E  L  L  E  F  Q  L  Y  G  M  E  V  E  A  R  T  M  S  V  N  I  D  S  L  K  T  E  V  E  K  E  K  S  L  S  S  E  M  E  A  K  C  H  E  L  E  N  D  L  R  K  K  S  Q  E  A  E  A  Q  Q  T  S  G  S  N  S  E  L  K  I  K  Q  :  E  D  L  A  V  A  A  D  K  L  A  E  C  Q  K  T  I  A  S  L  G  K  Q  L  Q  S  L  A  T  L  E  D  F  L  T  D  T  A  N  L  P  G  G  G  A  V  V  A  K  A  G  G  E  L  W  K  L  H  V  N  E  T  F  T  P  K  R  D  S  D  P  T  K  V  E  E  N  V  S  H  S  T  N  E  N  E  G  E  S  P  A  S  S  S  S  S  S  T  S  S  T  T  Q  A  S  T  G  K  S  K  N  G  F  G  K  L  F  S  R  S  K  S  G  V  P  T  L  K  V  I  E  D  K  *  I  E  E  E  C  *  E  G  W  N  I  I  C  K  R  F  I  S  Y  M  A  D  Q  I  L  F  D  K  Q  T  V  C  F  N  S  Y  D  E  Y  L  E  K  L  Q  I  A  I  D  T  L  N  L  H  C  F  G  *  S  P  S  F  Y  L  I  H  F  S  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48383" stop="48505"/>
                    <exon start="50081" stop="50273"/>
                    <exon start="50661" stop="51955"/>
                    <exon start="52069" stop="52470"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2010</number_coding_nucleotides>
                  <number_encoded_amino_acids>670</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLIEMEKRKWLWKRRPSDKSPGETESSGSLSSYSERYSDEQDALKEFPDHDKQSPEVTSKAAFVDDESKESLRCLTEKLSAALVNVSAKEDLVKQHAKVAEEAIAGWEKAENEVAVLKQQLDAAVQQNLTLEVRVSHLDGALKECVRQLRQARDEQEKMIQDAMAEKNEMESEKTALEKQLLKLQTQVEAGKAEMPTSTDPDILVRLKYLEKENAALKIELVSCSEVLEIRTIERDLSTQAAETASKQQLESIKKLTKLEVECRKLQAMARKSSPFNDQRSSAVSSFYVDSVTDSQSDSGERLNTVDNDALKMSKLETREYEPSCSNSWASALIAELDQFKNEKAMPKTLAACSIEIDMMDDFLEMEQLAALSETANKTPSVTSDAVPHDSPNIENPLAAEYNSISQRVVELEQKLEKIEAEKAELENAFNESQDALKVSSLQLKETQTRLEGLQKELDVVNESKELLEFQLYGMEVEARTMSVNIDSLKTEVEKEKSLSSEMEAKCHELENDLRKKSQEAEAQQTSGSNSELKIKQEDLAVAADKLAECQKTIASLGKQLQSLATLEDFLTDTANLPGGGAVVAKAGGELWKLHVNETFTPKRDSDPTKVEENVSHSTNENEGESPASSSSSSTSSTTQASTGKSKNGFGKLFSRSKSGVPTLKVIEDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48090" e_stop="48223"/>
            <exon e_start="48349" e_stop="48505"/>
            <exon e_start="50081" e_stop="50273"/>
            <exon e_start="50661" e_stop="51955"/>
            <exon e_start="52069" e_stop="52679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.948" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48090" e_stop="48223" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="48224" i_stop="48348" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48349" e_stop="48505" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.970">
            <gDNA_intron_boundary i_start="48506" i_stop="50080" i_length="1575"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="50081" e_stop="50273" e_length="193"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50274" i_stop="50660" i_length="387"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50661" e_stop="51955" e_length="1295"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.948">
            <gDNA_intron_boundary i_start="51956" i_stop="52068" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52069" e_stop="52679" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48090" stop="48223"/>
              <exon start="48349" stop="48505"/>
              <exon start="50081" stop="50273"/>
              <exon start="50661" stop="50724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48392" stop="48505"/>
              <exon start="50081" stop="50273"/>
              <exon start="50661" stop="50973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50221" stop="50273"/>
              <exon start="50661" stop="51955"/>
              <exon start="52069" stop="52626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51413" stop="51955"/>
              <exon start="52069" stop="52157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51414" stop="51955"/>
              <exon start="52069" stop="52156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52302" stop="52679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52380" stop="52679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGCTTATTTTTTGAGCTTAGATGGATAGTTGAGTGGATTTGAAGGAAAACTGAATGAACTTGAAGCCAAGTTATAGTTGTTGTTAAATGACAGTGTGTTTGGACAGCTGGTTGTATTCTGTAGGGTATAG : ATGGACATTGTACTATGAGCATTTAGGAGATTAAATGCTTATTGAGATGGAAAAGAGGAAATGGTTGTGGAAAAGGAGACCTTCCGATAAGAGCCCTGGTGAAACGGAGAGTTCTGGTTCTTTATCTTCATATTCGGAGAGATACTCCGATGAGCAG : GATGCACTAAAAGAATTTCCTGACCATGACAAACAGTCACCAGAGGTTACCTCAAAAGCTGCATTCGTTGATGATGAATCCAAGGAAAGCTTGAGATGCTTGACAGAGAAATTATCAGCTGCTCTTGTTAATGTTAGCGCCAAAGAAGACTTAGTTAAGCAGCATGCTAAAGTTGCCGAAGAAGCTATCGCAG : GTTGGGAAAAGGCAGAAAATGAAGTTGCAGTTCTAAAGCAGCAACTAGATGCGGCTGTGCAGCAAAACTTGACTTTGGAAGTTCGTGTCAGTCATCTCGACGGTGCACTCAAGGAATGTGTCAGGCAGTTGAGACAAGCAAGAGATGAGCAAGAGAAAATGATTCAAGACGCTATGGCAGAAAAAAATGAAATGGAATCTGAAAAAACTGCACTTGAGAAACAGCTACTTAAGCTCCAGACACAAGTGGAGGCTGGTAAAGCTGAAATGCCTACTTCTACTGATCCTGATATCCTTGTCAGGCTTAAGTATCTAGAGAAAGAGAATGCAGCTCTCAAAATTGAACTTGTCTCTTGTTCAGAAGTGTTGGAAATTAGGACTATTGAGAGGGATTTGAGTACTCAAGCAGCAGAAACTGCCAGCAAGCAGCAGCTGGAAAGCATAAAAAAACTGACCAAACTTGAAGTTGAGTGTCGAAAGCTACAGGCCATGGCTCGCAAATCATCCCCATTCAATGATCAACGCTCCTCTGCTGTTTCATCTTTCTATGTGGACTCTGTCACCGATAGCCAGTCTGACAGTGGAGAGCGGTTAAACACAGTTGACAATGATGCCCTCAAAATGAGTAAACTGGAAACAAGAGAATATGAACCAAGTTGCTCAAATTCATGGGCTTCAGCACTCATTGCTGAGCTTGATCAATTTAAGAATGAAAAGGCCATGCCTAAAACTCTTGCTGCCTGTTCTATAGAAATCGATATGATGGATGATTTCTTGGAGATGGAGCAACTTGCTGCATTATCTGAAACTGCAAACAAGACACCTTCAGTAACTTCTGATGCTGTTCCTCATGATTCTCCCAATATTGAGAACCCTTTGGCAGCAGAATACAATTCCATTTCACAAAGGGTGGTTGAATTAGAACAAAAGCTGGAGAAGATTGAAGCAGAGAAAGCTGAACTGGAGAATGCTTTCAACGAGAGTCAAGATGCCCTTAAAGTGTCCTCTTTGCAGCTTAAGGAAACTCAAACCAGGTTGGAAGGGCTGCAGAAGGAGCTAGATGTGGTAAATGAGTCAAAAGAGTTGCTCGAGTTTCAACTCTATGGCATGGAGGTAGAAGCACGGACAATGTCTGTAAATATTGATTCTTTGAAGACGGAAGTTGAAAAAGAAAAATCTTTGTCATCAGAAATGGAAGCTAAATGTCATGAATTGGAAAACGACCTTAGAAAAAAATCCCAGGAAGCTGAAGCTCAGCAAACTTCTGGTTCAAATAGTGAATTGAAAATAAAACAG : GAGGATTTAGCCGTGGCTGCTGACAAGCTTGCAGAATGCCAGAAAACAATTGCATCCCTTGGGAAACAGCTACAATCCCTAGCTACTCTAGAAGATTTCCTGACAGACACTGCAAATCTTCCTGGTGGAGGAGCAGTTGTTGCTAAAGCAGGAGGAGAACTATGGAAGTTGCATGTAAACGAGACATTTACCCCAAAACGTGATTCTGATCCTACCAAGGTTGAGGAGAATGTGAGTCATTCTACAAACGAAAATGAAGGGGAATCTCCAGCATCTTCATCTTCATCATCTACTTCATCCACTACTCAGGCTAGCACTGGCAAAAGCAAAAATGGCTTTGGGAAGTTGTTTTCTCGGAGTAAGAGTGGAGTTCCAACTCTAAAAGTTATCGAGGATAAATAAATAGAGGAAGAATGTTGAGAAGGTTGGAACATAATTTGTAAAAGGTTTATCAGTTACATGGCTGATCAAATTCTGTTTGATAAGCAAACTGTTTGCTTCAATAGTTATGATGAATATCTTGAGAAGCTTCAAATAGCAATAGACACCTTGAATTTACACTGCTTTGGCTAATCTCCCTCTTTTTATTTAATCCATTTCAGTATATTTTT</gDNA_template>
            <first_frame> K  M  L  I  F  *  A  *  M  D  S  *  V  D  L  K  E  N  *  M  N  L  K  P  S  Y  S  C  C  *  M  T  V  C  L  D  S  W  L  Y  S  V  G  Y  R :   W  T  L  Y  Y  E  H  L  G  D  *  M  L  I  E  M  E  K  R  K  W  L  W  K  R  R  P  S  D  K  S  P  G  E  T  E  S  S  G  S  L  S  S  Y  S  E  R  Y  S  D  E  Q  :  D  A  L  K  E  F  P  D  H  D  K  Q  S  P  E  V  T  S  K  A  A  F  V  D  D  E  S  K  E  S  L  R  C  L  T  E  K  L  S  A  A  L  V  N  V  S  A  K  E  D  L  V  K  Q  H  A  K  V  A  E  E  A  I  A   : G  W  E  K  A  E  N  E  V  A  V  L  K  Q  Q  L  D  A  A  V  Q  Q  N  L  T  L  E  V  R  V  S  H  L  D  G  A  L  K  E  C  V  R  Q  L  R  Q  A  R  D  E  Q  E  K  M  I  Q  D  A  M  A  E  K  N  E  M  E  S  E  K  T  A  L  E  K  Q  L  L  K  L  Q  T  Q  V  E  A  G  K  A  E  M  P  T  S  T  D  P  D  I  L  V  R  L  K  Y  L  E  K  E  N  A  A  L  K  I  E  L  V  S  C  S  E  V  L  E  I  R  T  I  E  R  D  L  S  T  Q  A  A  E  T  A  S  K  Q  Q  L  E  S  I  K  K  L  T  K  L  E  V  E  C  R  K  L  Q  A  M  A  R  K  S  S  P  F  N  D  Q  R  S  S  A  V  S  S  F  Y  V  D  S  V  T  D  S  Q  S  D  S  G  E  R  L  N  T  V  D  N  D  A  L  K  M  S  K  L  E  T  R  E  Y  E  P  S  C  S  N  S  W  A  S  A  L  I  A  E  L  D  Q  F  K  N  E  K  A  M  P  K  T  L  A  A  C  S  I  E  I  D  M  M  D  D  F  L  E  M  E  Q  L  A  A  L  S  E  T  A  N  K  T  P  S  V  T  S  D  A  V  P  H  D  S  P  N  I  E  N  P  L  A  A  E  Y  N  S  I  S  Q  R  V  V  E  L  E  Q  K  L  E  K  I  E  A  E  K  A  E  L  E  N  A  F  N  E  S  Q  D  A  L  K  V  S  S  L  Q  L  K  E  T  Q  T  R  L  E  G  L  Q  K  E  L  D  V  V  N  E  S  K  E  L  L  E  F  Q  L  Y  G  M  E  V  E  A  R  T  M  S  V  N  I  D  S  L  K  T  E  V  E  K  E  K  S  L  S  S  E  M  E  A  K  C  H  E  L  E  N  D  L  R  K  K  S  Q  E  A  E  A  Q  Q  T  S  G  S  N  S  E  L  K  I  K  Q  :  E  D  L  A  V  A  A  D  K  L  A  E  C  Q  K  T  I  A  S  L  G  K  Q  L  Q  S  L  A  T  L  E  D  F  L  T  D  T  A  N  L  P  G  G  G  A  V  V  A  K  A  G  G  E  L  W  K  L  H  V  N  E  T  F  T  P  K  R  D  S  D  P  T  K  V  E  E  N  V  S  H  S  T  N  E  N  E  G  E  S  P  A  S  S  S  S  S  S  T  S  S  T  T  Q  A  S  T  G  K  S  K  N  G  F  G  K  L  F  S  R  S  K  S  G  V  P  T  L  K  V  I  E  D  K  *  I  E  E  E  C  *  E  G  W  N  I  I  C  K  R  F  I  S  Y  M  A  D  Q  I  L  F  D  K  Q  T  V  C  F  N  S  Y  D  E  Y  L  E  K  L  Q  I  A  I  D  T  L  N  L  H  C  F  G  *  S  P  S  F  Y  L  I  H  F  S  I  F   </first_frame>
            <second_frame>  K  C  L  F  F  E  L  R  W  I  V  E  W  I  *  R  K  T  E  *  T  *  S  Q  V  I  V  V  V  K  *  Q  C  V  W  T  A  G  C  I  L  *  G  I   : D  G  H  C  T  M  S  I  *  E  I  K  C  L  L  R  W  K  R  G  N  G  C  G  K  G  D  L  P  I  R  A  L  V  K  R  R  V  L  V  L  Y  L  H  I  R  R  D  T  P  M  S  R :   M  H  *  K  N  F  L  T  M  T  N  S  H  Q  R  L  P  Q  K  L  H  S  L  M  M  N  P  R  K  A  *  D  A  *  Q  R  N  Y  Q  L  L  L  L  M  L  A  P  K  K  T  *  L  S  S  M  L  K  L  P  K  K  L  S  Q  :  V  G  K  R  Q  K  M  K  L  Q  F  *  S  S  N  *  M  R  L  C  S  K  T  *  L  W  K  F  V  S  V  I  S  T  V  H  S  R  N  V  S  G  S  *  D  K  Q  E  M  S  K  R  K  *  F  K  T  L  W  Q  K  K  M  K  W  N  L  K  K  L  H  L  R  N  S  Y  L  S  S  R  H  K  W  R  L  V  K  L  K  C  L  L  L  L  I  L  I  S  L  S  G  L  S  I  *  R  K  R  M  Q  L  S  K  L  N  L  S  L  V  Q  K  C  W  K  L  G  L  L  R  G  I  *  V  L  K  Q  Q  K  L  P  A  S  S  S  W  K  A  *  K  N  *  P  N  L  K  L  S  V  E  S  Y  R  P  W  L  A  N  H  P  H  S  M  I  N  A  P  L  L  F  H  L  S  M  W  T  L  S  P  I  A  S  L  T  V  E  S  G  *  T  Q  L  T  M  M  P  S  K  *  V  N  W  K  Q  E  N  M  N  Q  V  A  Q  I  H  G  L  Q  H  S  L  L  S  L  I  N  L  R  M  K  R  P  C  L  K  L  L  L  P  V  L  *  K  S  I  *  W  M  I  S  W  R  W  S  N  L  L  H  Y  L  K  L  Q  T  R  H  L  Q  *  L  L  M  L  F  L  M  I  L  P  I  L  R  T  L  W  Q  Q  N  T  I  P  F  H  K  G  W  L  N  *  N  K  S  W  R  R  L  K  Q  R  K  L  N  W  R  M  L  S  T  R  V  K  M  P  L  K  C  P  L  C  S  L  R  K  L  K  P  G  W  K  G  C  R  R  S  *  M  W  *  M  S  Q  K  S  C  S  S  F  N  S  M  A  W  R  *  K  H  G  Q  C  L  *  I  L  I  L  *  R  R  K  L  K  K  K  N  L  C  H  Q  K  W  K  L  N  V  M  N  W  K  T  T  L  E  K  N  P  R  K  L  K  L  S  K  L  L  V  Q  I  V  N  *  K  *  N  R :   R  I  *  P  W  L  L  T  S  L  Q  N  A  R  K  Q  L  H  P  L  G  N  S  Y  N  P  *  L  L  *  K  I  S  *  Q  T  L  Q  I  F  L  V  E  E  Q  L  L  L  K  Q  E  E  N  Y  G  S  C  M  *  T  R  H  L  P  Q  N  V  I  L  I  L  P  R  L  R  R  M  *  V  I  L  Q  T  K  M  K  G  N  L  Q  H  L  H  L  H  H  L  L  H  P  L  L  R  L  A  L  A  K  A  K  M  A  L  G  S  C  F  L  G  V  R  V  E  F  Q  L  *  K  L  S  R  I  N  K  *  R  K  N  V  E  K  V  G  T  *  F  V  K  G  L  S  V  T  W  L  I  K  F  C  L  I  S  K  L  F  A  S  I  V  M  M  N  I  L  R  S  F  K  *  Q  *  T  P  *  I  Y  T  A  L  A  N  L  P  L  F  I  *  S  I  S  V  Y  F  </second_frame>
            <third_frame>   N  A  Y  F  L  S  L  D  G  *  L  S  G  F  E  G  K  L  N  E  L  E  A  K  L  *  L  L  L  N  D  S  V  F  G  Q  L  V  V  F  C  R  V  *  :  M  D  I  V  L  *  A  F  R  R  L  N  A  Y  *  D  G  K  E  E  M  V  V  E  K  E  T  F  R  *  E  P  W  *  N  G  E  F  W  F  F  I  F  I  F  G  E  I  L  R  *  A   : G  C  T  K  R  I  S  *  P  *  Q  T  V  T  R  G  Y  L  K  S  C  I  R  *  *  *  I  Q  G  K  L  E  M  L  D  R  E  I  I  S  C  S  C  *  C  *  R  Q  R  R  L  S  *  A  A  C  *  S  C  R  R  S  Y  R  R :   L  G  K  G  R  K  *  S  C  S  S  K  A  A  T  R  C  G  C  A  A  K  L  D  F  G  S  S  C  Q  S  S  R  R  C  T  Q  G  M  C  Q  A  V  E  T  S  K  R  *  A  R  E  N  D  S  R  R  Y  G  R  K  K  *  N  G  I  *  K  N  C  T  *  E  T  A  T  *  A  P  D  T  S  G  G  W  *  S  *  N  A  Y  F  Y  *  S  *  Y  P  C  Q  A  *  V  S  R  E  R  E  C  S  S  Q  N  *  T  C  L  L  F  R  S  V  G  N  *  D  Y  *  E  G  F  E  Y  S  S  S  R  N  C  Q  Q  A  A  A  G  K  H  K  K  T  D  Q  T  *  S  *  V  S  K  A  T  G  H  G  S  Q  I  I  P  I  Q  *  S  T  L  L  C  C  F  I  F  L  C  G  L  C  H  R  *  P  V  *  Q  W  R  A  V  K  H  S  *  Q  *  C  P  Q  N  E  *  T  G  N  K  R  I  *  T  K  L  L  K  F  M  G  F  S  T  H  C  *  A  *  S  I  *  E  *  K  G  H  A  *  N  S  C  C  L  F  Y  R  N  R  Y  D  G  *  F  L  G  D  G  A  T  C  C  I  I  *  N  C  K  Q  D  T  F  S  N  F  *  C  C  S  S  *  F  S  Q  Y  *  E  P  F  G  S  R  I  Q  F  H  F  T  K  G  G  *  I  R  T  K  A  G  E  D  *  S  R  E  S  *  T  G  E  C  F  Q  R  E  S  R  C  P  *  S  V  L  F  A  A  *  G  N  S  N  Q  V  G  R  A  A  E  G  A  R  C  G  K  *  V  K  R  V  A  R  V  S  T  L  W  H  G  G  R  S  T  D  N  V  C  K  Y  *  F  F  E  D  G  S  *  K  R  K  I  F  V  I  R  N  G  S  *  M  S  *  I  G  K  R  P  *  K  K  I  P  G  S  *  S  S  A  N  F  W  F  K  *  *  I  E  N  K  T   : G  G  F  S  R  G  C  *  Q  A  C  R  M  P  E  N  N  C  I  P  W  E  T  A  T  I  P  S  Y  S  R  R  F  P  D  R  H  C  K  S  S  W  W  R  S  S  C  C  *  S  R  R  R  T  M  E  V  A  C  K  R  D  I  Y  P  K  T  *  F  *  S  Y  Q  G  *  G  E  C  E  S  F  Y  K  R  K  *  R  G  I  S  S  I  F  I  F  I  I  Y  F  I  H  Y  S  G  *  H  W  Q  K  Q  K  W  L  W  E  V  V  F  S  E  *  E  W  S  S  N  S  K  S  Y  R  G  *  I  N  R  G  R  M  L  R  R  L  E  H  N  L  *  K  V  Y  Q  L  H  G  *  S  N  S  V  *  *  A  N  C  L  L  Q  *  L  *  *  I  S  *  E  A  S  N  S  N  R  H  L  E  F  T  L  L  W  L  I  S  L  F  L  F  N  P  F  Q  Y  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48383" stop="48505"/>
                    <exon start="50081" stop="50273"/>
                    <exon start="50661" stop="51955"/>
                    <exon start="52069" stop="52470"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2010</number_coding_nucleotides>
                  <number_encoded_amino_acids>670</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLIEMEKRKWLWKRRPSDKSPGETESSGSLSSYSERYSDEQDALKEFPDHDKQSPEVTSKAAFVDDESKESLRCLTEKLSAALVNVSAKEDLVKQHAKVAEEAIAGWEKAENEVAVLKQQLDAAVQQNLTLEVRVSHLDGALKECVRQLRQARDEQEKMIQDAMAEKNEMESEKTALEKQLLKLQTQVEAGKAEMPTSTDPDILVRLKYLEKENAALKIELVSCSEVLEIRTIERDLSTQAAETASKQQLESIKKLTKLEVECRKLQAMARKSSPFNDQRSSAVSSFYVDSVTDSQSDSGERLNTVDNDALKMSKLETREYEPSCSNSWASALIAELDQFKNEKAMPKTLAACSIEIDMMDDFLEMEQLAALSETANKTPSVTSDAVPHDSPNIENPLAAEYNSISQRVVELEQKLEKIEAEKAELENAFNESQDALKVSSLQLKETQTRLEGLQKELDVVNESKELLEFQLYGMEVEARTMSVNIDSLKTEVEKEKSLSSEMEAKCHELENDLRKKSQEAEAQQTSGSNSELKIKQEDLAVAADKLAECQKTIASLGKQLQSLATLEDFLTDTANLPGGGAVVAKAGGELWKLHVNETFTPKRDSDPTKVEENVSHSTNENEGESPASSSSSSTSSTTQASTGKSKNGFGKLFSRSKSGVPTLKVIEDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="53990" PGL_stop="59261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53990" e_stop="54068"/>
            <exon e_start="54687" e_stop="54923"/>
            <exon e_start="55157" e_stop="55261"/>
            <exon e_start="55448" e_stop="55723"/>
            <exon e_start="55927" e_stop="56074"/>
            <exon e_start="56205" e_stop="56389"/>
            <exon e_start="56482" e_stop="56594"/>
            <exon e_start="56828" e_stop="57122"/>
            <exon e_start="57617" e_stop="58227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.559" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53990" e_stop="54068" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.947">
            <gDNA_intron_boundary i_start="54069" i_stop="54686" i_length="618"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54687" e_stop="54923" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.883">
            <gDNA_intron_boundary i_start="54924" i_stop="55156" i_length="233"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55157" e_stop="55261" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55262" i_stop="55447" i_length="186"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55448" e_stop="55723" e_length="276"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55927" e_stop="56074" e_length="148"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.991">
            <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56205" e_stop="56389" e_length="185"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.857">
            <gDNA_intron_boundary i_start="56390" i_stop="56481" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56482" e_stop="56594" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.559" acc_prob="0.927">
            <gDNA_intron_boundary i_start="56595" i_stop="56827" i_length="233"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56828" e_stop="57122" e_length="295"/>
          </exon>
          <intron i_serial="8" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57123" i_stop="57616" i_length="494"/>
          </intron>
          <exon e_serial="9" e_score="0.995">
            <gDNA_exon_boundary e_start="57617" e_stop="58227" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53990" stop="54068"/>
              <exon start="54687" stop="54923"/>
              <exon start="55157" stop="55261"/>
              <exon start="55448" stop="55723"/>
              <exon start="55927" stop="56067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53994" stop="54068"/>
              <exon start="54687" stop="54923"/>
              <exon start="55157" stop="55261"/>
              <exon start="55448" stop="55723"/>
              <exon start="55927" stop="55943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54019" stop="54068"/>
              <exon start="54687" stop="54923"/>
              <exon start="55157" stop="55261"/>
              <exon start="55448" stop="55723"/>
              <exon start="55927" stop="55979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54749" stop="54914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54749" stop="54909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54751" stop="54923"/>
              <exon start="55157" stop="55261"/>
              <exon start="55448" stop="55723"/>
              <exon start="55927" stop="55939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54771" stop="54923"/>
              <exon start="55157" stop="55261"/>
              <exon start="55448" stop="55633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55512" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55540" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55624" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55687" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57122"/>
              <exon start="57617" stop="57692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56236" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56236" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56569" stop="56594"/>
              <exon start="56828" stop="57122"/>
              <exon start="57617" stop="58001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612124" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57054" stop="57122"/>
              <exon start="57617" stop="58226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57055" stop="57122"/>
              <exon start="57617" stop="58227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57652" stop="58124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434917" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCCATTGCTACTGCTACTGCTATTTCTCTTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAG : TTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG : GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG : GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG : TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG : GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG : ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAG : CTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATACGTTTGGAGACATTTTGCTGAGCAG : GTTTTAAACGAAGACTTACGGCTTGTGCTTGGCCAGCAGGATCGCATGCTCAATGGCGCCAATATTTGGAATCTGCCAGTGTCTTACGATAAGCTAGGTGTGAGGTATAGAATATGGAGAGACGCTGTAGATAGTGGAGAAAAGGAACTACCTTTCAGCAAATAAATATCGTTCTATCAAGAACTGGGTTCTACTTTTCAAGATGACTTTGATCTCTTCATAGTCAGCCCACGCCAAAATTCAGTCCAGCTGCTGAGAAGCTCTCACTTACTGCAGTTTTCCATATTTTTTCTTGTGAGGAGATACTTCAACTCTACTGTAAATATAGCTGTACACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAACCTTACATTCCTCACCAACAATCTATCCTGTCCTGATTGCCACTTGAAAAAATCTCATAGGTTCTTTGTAAGTGTCTAGAGTCCCCCAGCAATGTCGTTCCACCTTGTTATAGCATAATTTCTGATCTCAGATTGCAAGTATTCTTTTTGCCTAACAATAAGTCAGAGATGTTTTGATCTTTGGTAGCAGTTTGAGCTCAGTTGAATCAGTATGATAGTATTGAAATATTATCCTTGTAGT</gDNA_template>
            <first_frame> S  H  C  Y  C  Y  C  Y  F  S  F  T  S  F  L  F  V  P  L  *  Q  V  L  Y  *  K   : V  C  Q  R  E  L  W  S  I  C  C  V  W  G  G  G  W  D  S  R  *  E  K  F  L  V  D  T  L  *  C  G  R  S  Q  D  *  S  S  T  K  *  R  Q  V  L  G  C  K  S  S  F  R  S  C  *  I  *  S  T  I  L  *  L  E  S  *  A  R  C  T  Y  Y  N  A  A  T  R  K   : G  C  G  S  I  K  P  S  G  T  R  L  *  I  Y  W  N  H  E  E  G  T  C  R  I  A  R  R  T  F  S  G  S  Q  P   : G  T  Y  I  R  G  P  G  F  C  C  F  R  *  A  S  L  H  G  R  I  G  *  R  *  A  S  A  R  E  K  H  S  R  I  R  M  H  V  F  L  C  K  H  V  N  R  I  I  R  H  S  K  K  Q  A  T  T  K  N  A  E  C  L  R  S  C  P  R  L  Q  F  P  F  E  E  L  L  V  P  C  C  I  L  R  R  S  *  E  *  H  H   : V  T  D  *  L  L  *  A  I  V  G  D  L  S  W  G  *  W  K  T  W  M  C  P  E  Y  M  C  T  *  S  L  P  S  *  S  W  L  S  K  *  G  S  H  P  M  P  L  S  R :   M  G  V  F  H  R  R  E  V  *  E  N  A  I  N  K  I  T  E  C  K  D  Q  S  T  A  L  L  *  A  R  G  N  D  M  D  L  A  R  K  *  S  T  C  S  Y  P  S  F  F  T  T  T  F  W  I  S  D  P  C  *   : D  S  H  G  T  S  S  G  T  W  T  T  F  R  Q  S  F  R  S  C  T  R  T  F  H  T  Y  I  N  F  C  *  R  M  E  C  T  K  :  L  G  K  V  L  D  S  C  I  W  S  A  R  I  L  G  S  I  S  N  R  Y  G  I  *  T  T  L  Y  G  F  I  H  H  W  H  L  K  A  R  Q  I  G  R  T  E  Y  Q  A  V  F  Y  A  P  S  S  T  A  C  L  L  T  C  I  T  T  E  N  T  V  I  I  *  N  V  T  G  F  C  S  P  A  E  T  H  P  L  H  A  I  R  L  E  T  F  C  *  A   : G  F  K  R  R  L  T  A  C  A  W  P  A  G  S  H  A  Q  W  R  Q  Y  L  E  S  A  S  V  L  R  *  A  R  C  E  V  *  N  M  E  R  R  C  R  *  W  R  K  G  T  T  F  Q  Q  I  N  I  V  L  S  R  T  G  F  Y  F  S  R  *  L  *  S  L  H  S  Q  P  T  P  K  F  S  P  A  A  E  K  L  S  L  T  A  V  F  H  I  F  S  C  E  E  I  L  Q  L  Y  C  K  Y  S  C  T  Q  F  F  C  R  F  V  Y  S  L  S  N  L  T  F  L  T  N  N  L  S  C  P  D  C  H  L  K  K  S  H  R  F  F  V  S  V  *  S  P  P  A  M  S  F  H  L  V  I  A  *  F  L  I  S  D  C  K  Y  S  F  C  L  T  I  S  Q  R  C  F  D  L  W  *  Q  F  E  L  S  *  I  S  M  I  V  L  K  Y  Y  P  C  S </first_frame>
            <second_frame>  A  I  A  T  A  T  A  I  S  L  S  L  P  F  S  L  C  R  S  N  K  S  C  T  R  K  :  F  V  K  G  S  F  G  V  F  A  V  Y  G  E  E  G  G  I  P  D  K  K  S  S  W  L  T  L  F  N  V  E  D  P  R  T  K  V  P  Q  S  K  G  K  F  L  D  A  N  Q  A  L  E  V  A  R  Y  D  L  Q  Y  C  D  W  R  A  R  Q  D  V  L  T  I  M  L  L  H  E  K  :  V  V  E  V  L  N  P  L  A  R  D  Y  K  S  I  G  T  M  K  K  E  L  A  E  L  Q  E  E  L  S  Q  A  H  N  Q  :  V  H  I  S  E  A  R  V  S  A  A  L  D  K  L  A  Y  M  E  E  L  V  N  D  R  L  L  Q  E  R  S  T  V  E  S  E  C  T  S  S  S  A  S  T  S  T  G  L  L  D  T  P  K  S  K  Q  P  R  R  T  L  N  V  S  G  P  V  Q  D  Y  S  S  R  L  K  N  F  W  Y  P  V  A  F  S  A  D  L  K  N  D  T  M  :  L  P  I  D  C  F  E  Q  S  W  V  I  F  R  G  A  D  G  K  P  G  C  V  R  N  T  C  A  H  R  A  C  P  L  D  L  G  S  V  N  E  G  R  I  Q  C  P  Y  H   : G  W  E  Y  S  T  D  G  K  C  E  K  M  P  S  T  R  L  L  N  V  K  I  K  A  L  P  C  F  E  Q  E  G  M  I  W  I  W  P  G  N  D  P  P  A  A  T  L  P  S  L  L  P  P  S  G  F  Q  I  H  A  E  :  I  V  M  E  L  P  V  E  H  G  L  L  L  D  N  L  L  D  L  A  H  A  P  F  T  H  T  S  T  F  A  K  G  W  S  V  P  S :   L  V  K  F  L  T  P  A  S  G  L  Q  G  Y  W  D  P  Y  P  I  D  M  E  F  R  P  P  C  M  V  L  S  T  I  G  I  S  K  P  G  K  L  E  G  Q  S  T  K  Q  C  S  T  H  L  H  Q  L  H  V  C  L  P  A  S  R  Q  K  T  R  L  L  Y  R  M  S  L  D  F  A  P  L  L  K  H  I  P  F  M  Q  Y  V  W  R  H  F  A  E  Q  :  V  L  N  E  D  L  R  L  V  L  G  Q  Q  D  R  M  L  N  G  A  N  I  W  N  L  P  V  S  Y  D  K  L  G  V  R  Y  R  I  W  R  D  A  V  D  S  G  E  K  E  L  P  F  S  K  *  I  S  F  Y  Q  E  L  G  S  T  F  Q  D  D  F  D  L  F  I  V  S  P  R  Q  N  S  V  Q  L  L  R  S  S  H  L  L  Q  F  S  I  F  F  L  V  R  R  Y  F  N  S  T  V  N  I  A  V  H  N  F  F  V  G  S  C  T  V  *  A  T  L  H  S  S  P  T  I  Y  P  V  L  I  A  T  *  K  N  L  I  G  S  L  *  V  S  R  V  P  Q  Q  C  R  S  T  L  L  *  H  N  F  *  S  Q  I  A  S  I  L  F  A  *  Q  *  V  R  D  V  L  I  F  G  S  S  L  S  S  V  E  S  V  *  *  Y  *  N  I  I  L  V   </second_frame>
            <third_frame>   P  L  L  L  L  L  L  F  L  F  H  F  L  S  L  C  A  A  L  T  S  L  V  L  E  S :   L  S  K  G  A  L  E  Y  L  L  C  M  G  R  R  V  G  F  Q  I  R  K  V  P  G  *  H  S  L  M  W  K  I  P  G  L  K  F  H  K  V  K  A  S  S  W  M  Q  I  K  L  *  K  L  L  D  M  I  Y  N  T  V  I  G  E  L  G  K  M  Y  L  L  *  C  C  Y  T  K  R :   L  W  K  Y  *  T  L  W  H  A  I  I  N  L  L  E  P  *  R  R  N  L  Q  N  C  K  K  N  F  L  R  L  T  T  R :   Y  I  Y  Q  R  P  G  F  L  L  L  *  I  S  *  L  T  W  K  N  W  L  T  I  G  F  C  K  R  E  A  Q  *  N  Q  N  A  R  L  P  L  Q  A  R  Q  Q  D  Y  *  T  L  Q  K  A  S  N  H  E  E  R  *  M  S  Q  V  L  S  K  I  T  V  P  V  *  R  T  F  G  T  L  L  H  S  P  Q  I  L  R  M  T  P  C :   Y  R  L  I  A  L  S  N  R  G  *  S  F  V  G  L  M  E  N  L  D  V  S  G  I  H  V  H  I  E  P  A  L  L  I  L  A  Q  *  M  R  V  A  S  N  A  L  I  T  :  D  G  S  I  P  P  T  G  S  V  R  K  C  H  Q  Q  D  Y  *  M  *  R  S  K  H  C  P  A  L  S  K  R  E  *  Y  G  F  G  Q  E  M  I  H  L  Q  L  P  F  L  L  Y  Y  H  L  L  D  F  R  S  M  L  R :   *  S  W  N  F  Q  W  N  M  D  Y  F  *  T  I  F  *  I  L  H  T  H  L  S  H  I  H  Q  L  L  L  K  D  G  V  Y  Q   : A  W  *  S  S  *  L  L  H  L  V  C  K  D  I  G  I  H  I  Q  *  I  W  N  L  D  H  L  V  W  F  Y  P  P  L  A  S  Q  S  Q  A  N  W  K  D  R  V  P  S  S  V  L  R  T  F  I  N  C  M  F  A  Y  L  H  H  D  R  K  H  G  Y  Y  I  E  C  H  W  I  L  L  P  C  *  N  T  S  P  S  C  N  T  F  G  D  I  L  L  S  R :   F  *  T  K  T  Y  G  L  C  L  A  S  R  I  A  C  S  M  A  P  I  F  G  I  C  Q  C  L  T  I  S  *  V  *  G  I  E  Y  G  E  T  L  *  I  V  E  K  R  N  Y  L  S  A  N  K  Y  R  S  I  K  N  W  V  L  L  F  K  M  T  L  I  S  S  *  S  A  H  A  K  I  Q  S  S  C  *  E  A  L  T  Y  C  S  F  P  Y  F  F  L  *  G  D  T  S  T  L  L  *  I  *  L  Y  T  I  F  L  *  V  R  V  Q  F  E  Q  P  Y  I  P  H  Q  Q  S  I  L  S  *  L  P  L  E  K  I  S  *  V  L  C  K  C  L  E  S  P  S  N  V  V  P  P  C  Y  S  I  I  S  D  L  R  L  Q  V  F  F  L  P  N  N  K  S  E  M  F  *  S  L  V  A  V  *  A  Q  L  N  Q  Y  D  S  I  E  I  L  S  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53991" stop="54068"/>
                    <exon start="54687" stop="54923"/>
                    <exon start="55157" stop="55261"/>
                    <exon start="55448" stop="55723"/>
                    <exon start="55927" stop="56074"/>
                    <exon start="56205" stop="56389"/>
                    <exon start="56482" stop="56594"/>
                    <exon start="56828" stop="57122"/>
                    <exon start="57617" stop="57781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1599</number_coding_nucleotides>
                  <number_encoded_amino_acids>533</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIATATAISLSLPFSLCRSNKSCTRKFVKGSFGVFAVYGEEGGIPDKKSSWLTLFNVEDPRTKVPQSKGKFLDANQALEVARYDLQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEELSQAHNQVHISEARVSAALDKLAYMEELVNDRLLQERSTVESECTSSSASTSTGLLDTPKSKQPRRTLNVSGPVQDYSSRLKNFWYPVAFSADLKNDTMLPIDCFEQSWVIFRGADGKPGCVRNTCAHRACPLDLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLNVKIKALPCFEQEGMIWIWPGNDPPAATLPSLLPPSGFQIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTKQCSTHLHQLHVCLPASRQKTRLLYRMSLDFAPLLKHIPFMQYVWRHFAEQVLNEDLRLVLGQQDRMLNGANIWNLPVSYDKLGVRYRIWRDAVDSGEKELPFSK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57829" stop="58065"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLHSQPTPKFSPAAEKLSLTAVFHIFSCEEILQLYCKYSCTQFFCRFVYSLSNLTFLTNNLSCPDCHLKKSHRFFVSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55447" e_stop="55723"/>
            <exon e_start="55927" e_stop="56074"/>
            <exon e_start="56205" e_stop="56389"/>
            <exon e_start="56482" e_stop="56594"/>
            <exon e_start="56828" e_stop="57122"/>
            <exon e_start="57617" e_stop="58227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="0.975"/>
          <exon-intron don_prob="0.955" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.559" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="55447" e_stop="55723" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55927" e_stop="56074" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.991">
            <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56205" e_stop="56389" e_length="185"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.857">
            <gDNA_intron_boundary i_start="56390" i_stop="56481" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56482" e_stop="56594" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.559" acc_prob="0.927">
            <gDNA_intron_boundary i_start="56595" i_stop="56827" i_length="233"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56828" e_stop="57122" e_length="295"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57123" i_stop="57616" i_length="494"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="57617" e_stop="58227" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55447" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55512" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55540" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55624" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55687" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57122"/>
              <exon start="57617" stop="57692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56236" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56236" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56569" stop="56594"/>
              <exon start="56828" stop="57122"/>
              <exon start="57617" stop="58001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612124" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57054" stop="57122"/>
              <exon start="57617" stop="58226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57055" stop="57122"/>
              <exon start="57617" stop="58227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57652" stop="58124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434917" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG : TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG : GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG : ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAG : CTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATACGTTTGGAGACATTTTGCTGAGCAG : GTTTTAAACGAAGACTTACGGCTTGTGCTTGGCCAGCAGGATCGCATGCTCAATGGCGCCAATATTTGGAATCTGCCAGTGTCTTACGATAAGCTAGGTGTGAGGTATAGAATATGGAGAGACGCTGTAGATAGTGGAGAAAAGGAACTACCTTTCAGCAAATAAATATCGTTCTATCAAGAACTGGGTTCTACTTTTCAAGATGACTTTGATCTCTTCATAGTCAGCCCACGCCAAAATTCAGTCCAGCTGCTGAGAAGCTCTCACTTACTGCAGTTTTCCATATTTTTTCTTGTGAGGAGATACTTCAACTCTACTGTAAATATAGCTGTACACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAACCTTACATTCCTCACCAACAATCTATCCTGTCCTGATTGCCACTTGAAAAAATCTCATAGGTTCTTTGTAAGTGTCTAGAGTCCCCCAGCAATGTCGTTCCACCTTGTTATAGCATAATTTCTGATCTCAGATTGCAAGTATTCTTTTTGCCTAACAATAAGTCAGAGATGTTTTGATCTTTGGTAGCAGTTTGAGCTCAGTTGAATCAGTATGATAGTATTGAAATATTATCCTTGTAGT</gDNA_template>
            <first_frame> G  T  Y  I  R  G  P  G  F  C  C  F  R  *  A  S  L  H  G  R  I  G  *  R  *  A  S  A  R  E  K  H  S  R  I  R  M  H  V  F  L  C  K  H  V  N  R  I  I  R  H  S  K  K  Q  A  T  T  K  N  A  E  C  L  R  S  C  P  R  L  Q  F  P  F  E  E  L  L  V  P  C  C  I  L  R  R  S  *  E  *  H  H   : V  T  D  *  L  L  *  A  I  V  G  D  L  S  W  G  *  W  K  T  W  M  C  P  E  Y  M  C  T  *  S  L  P  S  *  S  W  L  S  K  *  G  S  H  P  M  P  L  S  R :   M  G  V  F  H  R  R  E  V  *  E  N  A  I  N  K  I  T  E  C  K  D  Q  S  T  A  L  L  *  A  R  G  N  D  M  D  L  A  R  K  *  S  T  C  S  Y  P  S  F  F  T  T  T  F  W  I  S  D  P  C  *   : D  S  H  G  T  S  S  G  T  W  T  T  F  R  Q  S  F  R  S  C  T  R  T  F  H  T  Y  I  N  F  C  *  R  M  E  C  T  K  :  L  G  K  V  L  D  S  C  I  W  S  A  R  I  L  G  S  I  S  N  R  Y  G  I  *  T  T  L  Y  G  F  I  H  H  W  H  L  K  A  R  Q  I  G  R  T  E  Y  Q  A  V  F  Y  A  P  S  S  T  A  C  L  L  T  C  I  T  T  E  N  T  V  I  I  *  N  V  T  G  F  C  S  P  A  E  T  H  P  L  H  A  I  R  L  E  T  F  C  *  A   : G  F  K  R  R  L  T  A  C  A  W  P  A  G  S  H  A  Q  W  R  Q  Y  L  E  S  A  S  V  L  R  *  A  R  C  E  V  *  N  M  E  R  R  C  R  *  W  R  K  G  T  T  F  Q  Q  I  N  I  V  L  S  R  T  G  F  Y  F  S  R  *  L  *  S  L  H  S  Q  P  T  P  K  F  S  P  A  A  E  K  L  S  L  T  A  V  F  H  I  F  S  C  E  E  I  L  Q  L  Y  C  K  Y  S  C  T  Q  F  F  C  R  F  V  Y  S  L  S  N  L  T  F  L  T  N  N  L  S  C  P  D  C  H  L  K  K  S  H  R  F  F  V  S  V  *  S  P  P  A  M  S  F  H  L  V  I  A  *  F  L  I  S  D  C  K  Y  S  F  C  L  T  I  S  Q  R  C  F  D  L  W  *  Q  F  E  L  S  *  I  S  M  I  V  L  K  Y  Y  P  C  S </first_frame>
            <second_frame>  V  H  I  S  E  A  R  V  S  A  A  L  D  K  L  A  Y  M  E  E  L  V  N  D  R  L  L  Q  E  R  S  T  V  E  S  E  C  T  S  S  S  A  S  T  S  T  G  L  L  D  T  P  K  S  K  Q  P  R  R  T  L  N  V  S  G  P  V  Q  D  Y  S  S  R  L  K  N  F  W  Y  P  V  A  F  S  A  D  L  K  N  D  T  M  :  L  P  I  D  C  F  E  Q  S  W  V  I  F  R  G  A  D  G  K  P  G  C  V  R  N  T  C  A  H  R  A  C  P  L  D  L  G  S  V  N  E  G  R  I  Q  C  P  Y  H   : G  W  E  Y  S  T  D  G  K  C  E  K  M  P  S  T  R  L  L  N  V  K  I  K  A  L  P  C  F  E  Q  E  G  M  I  W  I  W  P  G  N  D  P  P  A  A  T  L  P  S  L  L  P  P  S  G  F  Q  I  H  A  E  :  I  V  M  E  L  P  V  E  H  G  L  L  L  D  N  L  L  D  L  A  H  A  P  F  T  H  T  S  T  F  A  K  G  W  S  V  P  S :   L  V  K  F  L  T  P  A  S  G  L  Q  G  Y  W  D  P  Y  P  I  D  M  E  F  R  P  P  C  M  V  L  S  T  I  G  I  S  K  P  G  K  L  E  G  Q  S  T  K  Q  C  S  T  H  L  H  Q  L  H  V  C  L  P  A  S  R  Q  K  T  R  L  L  Y  R  M  S  L  D  F  A  P  L  L  K  H  I  P  F  M  Q  Y  V  W  R  H  F  A  E  Q  :  V  L  N  E  D  L  R  L  V  L  G  Q  Q  D  R  M  L  N  G  A  N  I  W  N  L  P  V  S  Y  D  K  L  G  V  R  Y  R  I  W  R  D  A  V  D  S  G  E  K  E  L  P  F  S  K  *  I  S  F  Y  Q  E  L  G  S  T  F  Q  D  D  F  D  L  F  I  V  S  P  R  Q  N  S  V  Q  L  L  R  S  S  H  L  L  Q  F  S  I  F  F  L  V  R  R  Y  F  N  S  T  V  N  I  A  V  H  N  F  F  V  G  S  C  T  V  *  A  T  L  H  S  S  P  T  I  Y  P  V  L  I  A  T  *  K  N  L  I  G  S  L  *  V  S  R  V  P  Q  Q  C  R  S  T  L  L  *  H  N  F  *  S  Q  I  A  S  I  L  F  A  *  Q  *  V  R  D  V  L  I  F  G  S  S  L  S  S  V  E  S  V  *  *  Y  *  N  I  I  L  V   </second_frame>
            <third_frame>   Y  I  Y  Q  R  P  G  F  L  L  L  *  I  S  *  L  T  W  K  N  W  L  T  I  G  F  C  K  R  E  A  Q  *  N  Q  N  A  R  L  P  L  Q  A  R  Q  Q  D  Y  *  T  L  Q  K  A  S  N  H  E  E  R  *  M  S  Q  V  L  S  K  I  T  V  P  V  *  R  T  F  G  T  L  L  H  S  P  Q  I  L  R  M  T  P  C :   Y  R  L  I  A  L  S  N  R  G  *  S  F  V  G  L  M  E  N  L  D  V  S  G  I  H  V  H  I  E  P  A  L  L  I  L  A  Q  *  M  R  V  A  S  N  A  L  I  T  :  D  G  S  I  P  P  T  G  S  V  R  K  C  H  Q  Q  D  Y  *  M  *  R  S  K  H  C  P  A  L  S  K  R  E  *  Y  G  F  G  Q  E  M  I  H  L  Q  L  P  F  L  L  Y  Y  H  L  L  D  F  R  S  M  L  R :   *  S  W  N  F  Q  W  N  M  D  Y  F  *  T  I  F  *  I  L  H  T  H  L  S  H  I  H  Q  L  L  L  K  D  G  V  Y  Q   : A  W  *  S  S  *  L  L  H  L  V  C  K  D  I  G  I  H  I  Q  *  I  W  N  L  D  H  L  V  W  F  Y  P  P  L  A  S  Q  S  Q  A  N  W  K  D  R  V  P  S  S  V  L  R  T  F  I  N  C  M  F  A  Y  L  H  H  D  R  K  H  G  Y  Y  I  E  C  H  W  I  L  L  P  C  *  N  T  S  P  S  C  N  T  F  G  D  I  L  L  S  R :   F  *  T  K  T  Y  G  L  C  L  A  S  R  I  A  C  S  M  A  P  I  F  G  I  C  Q  C  L  T  I  S  *  V  *  G  I  E  Y  G  E  T  L  *  I  V  E  K  R  N  Y  L  S  A  N  K  Y  R  S  I  K  N  W  V  L  L  F  K  M  T  L  I  S  S  *  S  A  H  A  K  I  Q  S  S  C  *  E  A  L  T  Y  C  S  F  P  Y  F  F  L  *  G  D  T  S  T  L  L  *  I  *  L  Y  T  I  F  L  *  V  R  V  Q  F  E  Q  P  Y  I  P  H  Q  Q  S  I  L  S  *  L  P  L  E  K  I  S  *  V  L  C  K  C  L  E  S  P  S  N  V  V  P  P  C  Y  S  I  I  S  D  L  R  L  Q  V  F  F  L  P  N  N  K  S  E  M  F  *  S  L  V  A  V  *  A  Q  L  N  Q  Y  D  S  I  E  I  L  S  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55448" stop="55723"/>
                    <exon start="55927" stop="56074"/>
                    <exon start="56205" stop="56389"/>
                    <exon start="56482" stop="56594"/>
                    <exon start="56828" stop="57122"/>
                    <exon start="57617" stop="57781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHISEARVSAALDKLAYMEELVNDRLLQERSTVESECTSSSASTSTGLLDTPKSKQPRRTLNVSGPVQDYSSRLKNFWYPVAFSADLKNDTMLPIDCFEQSWVIFRGADGKPGCVRNTCAHRACPLDLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLNVKIKALPCFEQEGMIWIWPGNDPPAATLPSLLPPSGFQIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTKQCSTHLHQLHVCLPASRQKTRLLYRMSLDFAPLLKHIPFMQYVWRHFAEQVLNEDLRLVLGQQDRMLNGANIWNLPVSYDKLGVRYRIWRDAVDSGEKELPFSK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57829" stop="58065"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLHSQPTPKFSPAAEKLSLTAVFHIFSCEEILQLYCKYSCTQFFCRFVYSLSNLTFLTNNLSCPDCHLKKSHRFFVSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="53991" e_stop="54068"/>
            <exon e_start="54791" e_stop="54923"/>
            <exon e_start="55157" e_stop="55261"/>
            <exon e_start="55448" e_stop="55723"/>
            <exon e_start="55927" e_stop="56074"/>
            <exon e_start="56205" e_stop="56389"/>
            <exon e_start="56482" e_stop="56594"/>
            <exon e_start="56828" e_stop="57122"/>
            <exon e_start="57617" e_stop="58227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.000" e_score="0.936"/>
          <exon-intron don_prob="0.970" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.559" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="53991" e_stop="54068" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54069" i_stop="54790" i_length="722"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54791" e_stop="54923" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.883">
            <gDNA_intron_boundary i_start="54924" i_stop="55156" i_length="233"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55157" e_stop="55261" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55262" i_stop="55447" i_length="186"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55448" e_stop="55723" e_length="276"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55927" e_stop="56074" e_length="148"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.991">
            <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56205" e_stop="56389" e_length="185"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.857">
            <gDNA_intron_boundary i_start="56390" i_stop="56481" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56482" e_stop="56594" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.559" acc_prob="0.927">
            <gDNA_intron_boundary i_start="56595" i_stop="56827" i_length="233"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56828" e_stop="57122" e_length="295"/>
          </exon>
          <intron i_serial="8" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57123" i_stop="57616" i_length="494"/>
          </intron>
          <exon e_serial="9" e_score="0.995">
            <gDNA_exon_boundary e_start="57617" e_stop="58227" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53991" stop="54068"/>
              <exon start="54791" stop="54923"/>
              <exon start="55157" stop="55261"/>
              <exon start="55448" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55512" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55540" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55624" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55687" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57122"/>
              <exon start="57617" stop="57692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56236" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56236" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56569" stop="56594"/>
              <exon start="56828" stop="57122"/>
              <exon start="57617" stop="58001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612124" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57054" stop="57122"/>
              <exon start="57617" stop="58226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57055" stop="57122"/>
              <exon start="57617" stop="58227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57652" stop="58124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434917" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCATTGCTACTGCTACTGCTATTTCTCTTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAG : GACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG : GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG : GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG : TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG : GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG : ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAG : CTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATACGTTTGGAGACATTTTGCTGAGCAG : GTTTTAAACGAAGACTTACGGCTTGTGCTTGGCCAGCAGGATCGCATGCTCAATGGCGCCAATATTTGGAATCTGCCAGTGTCTTACGATAAGCTAGGTGTGAGGTATAGAATATGGAGAGACGCTGTAGATAGTGGAGAAAAGGAACTACCTTTCAGCAAATAAATATCGTTCTATCAAGAACTGGGTTCTACTTTTCAAGATGACTTTGATCTCTTCATAGTCAGCCCACGCCAAAATTCAGTCCAGCTGCTGAGAAGCTCTCACTTACTGCAGTTTTCCATATTTTTTCTTGTGAGGAGATACTTCAACTCTACTGTAAATATAGCTGTACACAATTTTTTTGTAGGTTCGTGTACAGTTTGAGCAACCTTACATTCCTCACCAACAATCTATCCTGTCCTGATTGCCACTTGAAAAAATCTCATAGGTTCTTTGTAAGTGTCTAGAGTCCCCCAGCAATGTCGTTCCACCTTGTTATAGCATAATTTCTGATCTCAGATTGCAAGTATTCTTTTTGCCTAACAATAAGTCAGAGATGTTTTGATCTTTGGTAGCAGTTTGAGCTCAGTTGAATCAGTATGATAGTATTGAAATATTATCCTTGTAGT</gDNA_template>
            <first_frame> A  I  A  T  A  T  A  I  S  L  S  L  P  F  S  L  C  R  S  N  K  S  C  T  R  K  :  D  *  S  S  T  K  *  R  Q  V  L  G  C  K  S  S  F  R  S  C  *  I  *  S  T  I  L  *  L  E  S  *  A  R  C  T  Y  Y  N  A  A  T  R  K   : G  C  G  S  I  K  P  S  G  T  R  L  *  I  Y  W  N  H  E  E  G  T  C  R  I  A  R  R  T  F  S  G  S  Q  P   : G  T  Y  I  R  G  P  G  F  C  C  F  R  *  A  S  L  H  G  R  I  G  *  R  *  A  S  A  R  E  K  H  S  R  I  R  M  H  V  F  L  C  K  H  V  N  R  I  I  R  H  S  K  K  Q  A  T  T  K  N  A  E  C  L  R  S  C  P  R  L  Q  F  P  F  E  E  L  L  V  P  C  C  I  L  R  R  S  *  E  *  H  H   : V  T  D  *  L  L  *  A  I  V  G  D  L  S  W  G  *  W  K  T  W  M  C  P  E  Y  M  C  T  *  S  L  P  S  *  S  W  L  S  K  *  G  S  H  P  M  P  L  S  R :   M  G  V  F  H  R  R  E  V  *  E  N  A  I  N  K  I  T  E  C  K  D  Q  S  T  A  L  L  *  A  R  G  N  D  M  D  L  A  R  K  *  S  T  C  S  Y  P  S  F  F  T  T  T  F  W  I  S  D  P  C  *   : D  S  H  G  T  S  S  G  T  W  T  T  F  R  Q  S  F  R  S  C  T  R  T  F  H  T  Y  I  N  F  C  *  R  M  E  C  T  K  :  L  G  K  V  L  D  S  C  I  W  S  A  R  I  L  G  S  I  S  N  R  Y  G  I  *  T  T  L  Y  G  F  I  H  H  W  H  L  K  A  R  Q  I  G  R  T  E  Y  Q  A  V  F  Y  A  P  S  S  T  A  C  L  L  T  C  I  T  T  E  N  T  V  I  I  *  N  V  T  G  F  C  S  P  A  E  T  H  P  L  H  A  I  R  L  E  T  F  C  *  A   : G  F  K  R  R  L  T  A  C  A  W  P  A  G  S  H  A  Q  W  R  Q  Y  L  E  S  A  S  V  L  R  *  A  R  C  E  V  *  N  M  E  R  R  C  R  *  W  R  K  G  T  T  F  Q  Q  I  N  I  V  L  S  R  T  G  F  Y  F  S  R  *  L  *  S  L  H  S  Q  P  T  P  K  F  S  P  A  A  E  K  L  S  L  T  A  V  F  H  I  F  S  C  E  E  I  L  Q  L  Y  C  K  Y  S  C  T  Q  F  F  C  R  F  V  Y  S  L  S  N  L  T  F  L  T  N  N  L  S  C  P  D  C  H  L  K  K  S  H  R  F  F  V  S  V  *  S  P  P  A  M  S  F  H  L  V  I  A  *  F  L  I  S  D  C  K  Y  S  F  C  L  T  I  S  Q  R  C  F  D  L  W  *  Q  F  E  L  S  *  I  S  M  I  V  L  K  Y  Y  P  C  S </first_frame>
            <second_frame>  P  L  L  L  L  L  L  F  L  F  H  F  L  S  L  C  A  A  L  T  S  L  V  L  E  R :   T  K  V  P  Q  S  K  G  K  F  L  D  A  N  Q  A  L  E  V  A  R  Y  D  L  Q  Y  C  D  W  R  A  R  Q  D  V  L  T  I  M  L  L  H  E  K  :  V  V  E  V  L  N  P  L  A  R  D  Y  K  S  I  G  T  M  K  K  E  L  A  E  L  Q  E  E  L  S  Q  A  H  N  Q  :  V  H  I  S  E  A  R  V  S  A  A  L  D  K  L  A  Y  M  E  E  L  V  N  D  R  L  L  Q  E  R  S  T  V  E  S  E  C  T  S  S  S  A  S  T  S  T  G  L  L  D  T  P  K  S  K  Q  P  R  R  T  L  N  V  S  G  P  V  Q  D  Y  S  S  R  L  K  N  F  W  Y  P  V  A  F  S  A  D  L  K  N  D  T  M  :  L  P  I  D  C  F  E  Q  S  W  V  I  F  R  G  A  D  G  K  P  G  C  V  R  N  T  C  A  H  R  A  C  P  L  D  L  G  S  V  N  E  G  R  I  Q  C  P  Y  H   : G  W  E  Y  S  T  D  G  K  C  E  K  M  P  S  T  R  L  L  N  V  K  I  K  A  L  P  C  F  E  Q  E  G  M  I  W  I  W  P  G  N  D  P  P  A  A  T  L  P  S  L  L  P  P  S  G  F  Q  I  H  A  E  :  I  V  M  E  L  P  V  E  H  G  L  L  L  D  N  L  L  D  L  A  H  A  P  F  T  H  T  S  T  F  A  K  G  W  S  V  P  S :   L  V  K  F  L  T  P  A  S  G  L  Q  G  Y  W  D  P  Y  P  I  D  M  E  F  R  P  P  C  M  V  L  S  T  I  G  I  S  K  P  G  K  L  E  G  Q  S  T  K  Q  C  S  T  H  L  H  Q  L  H  V  C  L  P  A  S  R  Q  K  T  R  L  L  Y  R  M  S  L  D  F  A  P  L  L  K  H  I  P  F  M  Q  Y  V  W  R  H  F  A  E  Q  :  V  L  N  E  D  L  R  L  V  L  G  Q  Q  D  R  M  L  N  G  A  N  I  W  N  L  P  V  S  Y  D  K  L  G  V  R  Y  R  I  W  R  D  A  V  D  S  G  E  K  E  L  P  F  S  K  *  I  S  F  Y  Q  E  L  G  S  T  F  Q  D  D  F  D  L  F  I  V  S  P  R  Q  N  S  V  Q  L  L  R  S  S  H  L  L  Q  F  S  I  F  F  L  V  R  R  Y  F  N  S  T  V  N  I  A  V  H  N  F  F  V  G  S  C  T  V  *  A  T  L  H  S  S  P  T  I  Y  P  V  L  I  A  T  *  K  N  L  I  G  S  L  *  V  S  R  V  P  Q  Q  C  R  S  T  L  L  *  H  N  F  *  S  Q  I  A  S  I  L  F  A  *  Q  *  V  R  D  V  L  I  F  G  S  S  L  S  S  V  E  S  V  *  *  Y  *  N  I  I  L  V   </second_frame>
            <third_frame>   H  C  Y  C  Y  C  Y  F  S  F  T  S  F  L  F  V  P  L  *  Q  V  L  Y  *  K   : G  L  K  F  H  K  V  K  A  S  S  W  M  Q  I  K  L  *  K  L  L  D  M  I  Y  N  T  V  I  G  E  L  G  K  M  Y  L  L  *  C  C  Y  T  K  R :   L  W  K  Y  *  T  L  W  H  A  I  I  N  L  L  E  P  *  R  R  N  L  Q  N  C  K  K  N  F  L  R  L  T  T  R :   Y  I  Y  Q  R  P  G  F  L  L  L  *  I  S  *  L  T  W  K  N  W  L  T  I  G  F  C  K  R  E  A  Q  *  N  Q  N  A  R  L  P  L  Q  A  R  Q  Q  D  Y  *  T  L  Q  K  A  S  N  H  E  E  R  *  M  S  Q  V  L  S  K  I  T  V  P  V  *  R  T  F  G  T  L  L  H  S  P  Q  I  L  R  M  T  P  C :   Y  R  L  I  A  L  S  N  R  G  *  S  F  V  G  L  M  E  N  L  D  V  S  G  I  H  V  H  I  E  P  A  L  L  I  L  A  Q  *  M  R  V  A  S  N  A  L  I  T  :  D  G  S  I  P  P  T  G  S  V  R  K  C  H  Q  Q  D  Y  *  M  *  R  S  K  H  C  P  A  L  S  K  R  E  *  Y  G  F  G  Q  E  M  I  H  L  Q  L  P  F  L  L  Y  Y  H  L  L  D  F  R  S  M  L  R :   *  S  W  N  F  Q  W  N  M  D  Y  F  *  T  I  F  *  I  L  H  T  H  L  S  H  I  H  Q  L  L  L  K  D  G  V  Y  Q   : A  W  *  S  S  *  L  L  H  L  V  C  K  D  I  G  I  H  I  Q  *  I  W  N  L  D  H  L  V  W  F  Y  P  P  L  A  S  Q  S  Q  A  N  W  K  D  R  V  P  S  S  V  L  R  T  F  I  N  C  M  F  A  Y  L  H  H  D  R  K  H  G  Y  Y  I  E  C  H  W  I  L  L  P  C  *  N  T  S  P  S  C  N  T  F  G  D  I  L  L  S  R :   F  *  T  K  T  Y  G  L  C  L  A  S  R  I  A  C  S  M  A  P  I  F  G  I  C  Q  C  L  T  I  S  *  V  *  G  I  E  Y  G  E  T  L  *  I  V  E  K  R  N  Y  L  S  A  N  K  Y  R  S  I  K  N  W  V  L  L  F  K  M  T  L  I  S  S  *  S  A  H  A  K  I  Q  S  S  C  *  E  A  L  T  Y  C  S  F  P  Y  F  F  L  *  G  D  T  S  T  L  L  *  I  *  L  Y  T  I  F  L  *  V  R  V  Q  F  E  Q  P  Y  I  P  H  Q  Q  S  I  L  S  *  L  P  L  E  K  I  S  *  V  L  C  K  C  L  E  S  P  S  N  V  V  P  P  C  Y  S  I  I  S  D  L  R  L  Q  V  F  F  L  P  N  N  K  S  E  M  F  *  S  L  V  A  V  *  A  Q  L  N  Q  Y  D  S  I  E  I  L  S  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53992" stop="54068"/>
                    <exon start="54791" stop="54923"/>
                    <exon start="55157" stop="55261"/>
                    <exon start="55448" stop="55723"/>
                    <exon start="55927" stop="56074"/>
                    <exon start="56205" stop="56389"/>
                    <exon start="56482" stop="56594"/>
                    <exon start="56828" stop="57122"/>
                    <exon start="57617" stop="57781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1494</number_coding_nucleotides>
                  <number_encoded_amino_acids>498</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLLLLLLFLFHFLSLCAALTSLVLERTKVPQSKGKFLDANQALEVARYDLQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEELSQAHNQVHISEARVSAALDKLAYMEELVNDRLLQERSTVESECTSSSASTSTGLLDTPKSKQPRRTLNVSGPVQDYSSRLKNFWYPVAFSADLKNDTMLPIDCFEQSWVIFRGADGKPGCVRNTCAHRACPLDLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLNVKIKALPCFEQEGMIWIWPGNDPPAATLPSLLPPSGFQIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTKQCSTHLHQLHVCLPASRQKTRLLYRMSLDFAPLLKHIPFMQYVWRHFAEQVLNEDLRLVLGQQDRMLNGANIWNLPVSYDKLGVRYRIWRDAVDSGEKELPFSK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57829" stop="58065"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLHSQPTPKFSPAAEKLSLTAVFHIFSCEEILQLYCKYSCTQFFCRFVYSLSNLTFLTNNLSCPDCHLKKSHRFFVSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="57885" e_stop="57910"/>
            <exon e_start="58047" e_stop="58053"/>
            <exon e_start="58683" e_stop="59261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.927" acc_prob="0.562" e_score="0.722"/>
          <exon-intron don_prob="0.659" acc_prob="0.000" e_score="0.714"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.722">
            <gDNA_exon_boundary e_start="57885" e_stop="57910" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.927" acc_prob="0.562">
            <gDNA_intron_boundary i_start="57911" i_stop="58046" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="58047" e_stop="58053" e_length="7"/>
          </exon>
          <intron i_serial="2" don_prob="0.659" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58054" i_stop="58682" i_length="629"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="58683" e_stop="59261" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57885" stop="57910"/>
              <exon start="58047" stop="58053"/>
              <exon start="58683" stop="59261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548820" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57893" stop="57910"/>
              <exon start="58047" stop="58053"/>
              <exon start="58683" stop="59018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411507" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTGCAGTTTTCCATATTTTTTCTT : GTTCTTT : GTGCTTGCAAACAGAACATTAACCATTTATATAAATTTATACCAGATAATACACTTAATAAGTTCAACAAAATTTACATAGGATTAGCATATAGATACAACATGGCTTTCTTAGAAAGCTACAGCTTAGTAATTAATAGATAGAGTTATCCCATATACAACTGTGGCAAAAACCTCATCATGTTAGGCAGGCTTCCAAACTGTGAGCACTTCTTGAAACATCTCTAGCATCAGATCTCTATCTGCCTGTCTGAAGAAGTTGTTAATTTCCTCCCTAACATCATAAATCTTGCCAAAATCGAACAAATACATCAAGCAACCTTTTTTCAATTTATTTAGCTGGTAAAGCCAGGCCTCTTGCAGTCTTTCGAGGACATTACCCGAGTTGATGTCTTCTAGGAGACTTTCCTCACAAGCATTCTTCAAATCTACAATATCATACTTGTTTGCCGCACCCAGTAATGCCAATCGGTGCTTCCAGAAATCCTCTTGTTTTATGGTTCCATACAAGTAACTAAGAAGCGCTGTGCATGATTCTGTTGACATGTCTTCTATGTCGATTATAGAGGACTCTTTCTCC</gDNA_template>
            <first_frame> Y  C  S  F  P  Y  F  F  L :   F  F  :  V  L  A  N  R  T  L  T  I  Y  I  N  L  Y  Q  I  I  H  L  I  S  S  T  K  F  T  *  D  *  H  I  D  T  T  W  L  S  *  K  A  T  A  *  *  L  I  D  R  V  I  P  Y  T  T  V  A  K  T  S  S  C  *  A  G  F  Q  T  V  S  T  S  *  N  I  S  S  I  R  S  L  S  A  C  L  K  K  L  L  I  S  S  L  T  S  *  I  L  P  K  S  N  K  Y  I  K  Q  P  F  F  N  L  F  S  W  *  S  Q  A  S  C  S  L  S  R  T  L  P  E  L  M  S  S  R  R  L  S  S  Q  A  F  F  K  S  T  I  S  Y  L  F  A  A  P  S  N  A  N  R  C  F  Q  K  S  S  C  F  M  V  P  Y  K  *  L  R  S  A  V  H  D  S  V  D  M  S  S  M  S  I  I  E  D  S  F  S </first_frame>
            <second_frame>  T  A  V  F  H  I  F  S   : C  S  L :   C  L  Q  T  E  H  *  P  F  I  *  I  Y  T  R  *  Y  T  *  *  V  Q  Q  N  L  H  R  I  S  I  *  I  Q  H  G  F  L  R  K  L  Q  L  S  N  *  *  I  E  L  S  H  I  Q  L  W  Q  K  P  H  H  V  R  Q  A  S  K  L  *  A  L  L  E  T  S  L  A  S  D  L  Y  L  P  V  *  R  S  C  *  F  P  P  *  H  H  K  S  C  Q  N  R  T  N  T  S  S  N  L  F  S  I  Y  L  A  G  K  A  R  P  L  A  V  F  R  G  H  Y  P  S  *  C  L  L  G  D  F  P  H  K  H  S  S  N  L  Q  Y  H  T  C  L  P  H  P  V  M  P  I  G  A  S  R  N  P  L  V  L  W  F  H  T  S  N  *  E  A  L  C  M  I  L  L  T  C  L  L  C  R  L  *  R  T  L  S   </second_frame>
            <third_frame>   L  Q  F  S  I  F  F  L  :  V  L   : C  A  C  K  Q  N  I  N  H  L  Y  K  F  I  P  D  N  T  L  N  K  F  N  K  I  Y  I  G  L  A  Y  R  Y  N  M  A  F  L  E  S  Y  S  L  V  I  N  R  *  S  Y  P  I  Y  N  C  G  K  N  L  I  M  L  G  R  L  P  N  C  E  H  F  L  K  H  L  *  H  Q  I  S  I  C  L  S  E  E  V  V  N  F  L  P  N  I  I  N  L  A  K  I  E  Q  I  H  Q  A  T  F  F  Q  F  I  *  L  V  K  P  G  L  L  Q  S  F  E  D  I  T  R  V  D  V  F  *  E  T  F  L  T  S  I  L  Q  I  Y  N  I  I  L  V  C  R  T  Q  *  C  Q  S  V  L  P  E  I  L  L  F  Y  G  S  I  Q  V  T  K  K  R  C  A  *  F  C  *  H  V  F  Y  V  D  Y  R  G  L  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0062I24.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="55447" e_stop="55723"/>
            <exon e_start="55927" e_stop="56074"/>
            <exon e_start="56205" e_stop="56518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="0.975"/>
          <exon-intron don_prob="0.955" acc_prob="0.991" e_score="0.973"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="55447" e_stop="55723" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="55927" e_stop="56074" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.991">
            <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="0.952">
            <gDNA_exon_boundary e_start="56205" e_stop="56518" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55447" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55447" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409484" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG : TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG : GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTT</gDNA_template>
            <first_frame> G  T  Y  I  R  G  P  G  F  C  C  F  R  *  A  S  L  H  G  R  I  G  *  R  *  A  S  A  R  E  K  H  S  R  I  R  M  H  V  F  L  C  K  H  V  N  R  I  I  R  H  S  K  K  Q  A  T  T  K  N  A  E  C  L  R  S  C  P  R  L  Q  F  P  F  E  E  L  L  V  P  C  C  I  L  R  R  S  *  E  *  H  H   : V  T  D  *  L  L  *  A  I  V  G  D  L  S  W  G  *  W  K  T  W  M  C  P  E  Y  M  C  T  *  S  L  P  S  *  S  W  L  S  K  *  G  S  H  P  M  P  L  S  R :   M  G  V  F  H  R  R  E  V  *  E  N  A  I  N  K  I  T  E  C  K  D  Q  S  T  A  L  L  *  A  R  G  N  D  M  D  L  A  R  K  *  S  T  C  S  Y  P  S  F  F  T  T  T  F  W  I  S  D  P  C  *  G  S  K  S  L  T  F  D  F  Q  L  F  I  L  Q  L  M  H  E  Y  F  A  L  R  L  F  S  L  K  V  Q  I  V  M  E  L  P  V  E  H  G  L  L  </first_frame>
            <second_frame>  V  H  I  S  E  A  R  V  S  A  A  L  D  K  L  A  Y  M  E  E  L  V  N  D  R  L  L  Q  E  R  S  T  V  E  S  E  C  T  S  S  S  A  S  T  S  T  G  L  L  D  T  P  K  S  K  Q  P  R  R  T  L  N  V  S  G  P  V  Q  D  Y  S  S  R  L  K  N  F  W  Y  P  V  A  F  S  A  D  L  K  N  D  T  M  :  L  P  I  D  C  F  E  Q  S  W  V  I  F  R  G  A  D  G  K  P  G  C  V  R  N  T  C  A  H  R  A  C  P  L  D  L  G  S  V  N  E  G  R  I  Q  C  P  Y  H   : G  W  E  Y  S  T  D  G  K  C  E  K  M  P  S  T  R  L  L  N  V  K  I  K  A  L  P  C  F  E  Q  E  G  M  I  W  I  W  P  G  N  D  P  P  A  A  T  L  P  S  L  L  P  P  S  G  F  Q  I  H  A  E  V  R  N  H  *  R  L  I  F  S  C  L  S  Y  N  L  C  M  S  I  L  P  Y  D  C  F  H  *  K  C  R  *  S  W  N  F  Q  W  N  M  D  Y  F </second_frame>
            <third_frame>   Y  I  Y  Q  R  P  G  F  L  L  L  *  I  S  *  L  T  W  K  N  W  L  T  I  G  F  C  K  R  E  A  Q  *  N  Q  N  A  R  L  P  L  Q  A  R  Q  Q  D  Y  *  T  L  Q  K  A  S  N  H  E  E  R  *  M  S  Q  V  L  S  K  I  T  V  P  V  *  R  T  F  G  T  L  L  H  S  P  Q  I  L  R  M  T  P  C :   Y  R  L  I  A  L  S  N  R  G  *  S  F  V  G  L  M  E  N  L  D  V  S  G  I  H  V  H  I  E  P  A  L  L  I  L  A  Q  *  M  R  V  A  S  N  A  L  I  T  :  D  G  S  I  P  P  T  G  S  V  R  K  C  H  Q  Q  D  Y  *  M  *  R  S  K  H  C  P  A  L  S  K  R  E  *  Y  G  F  G  Q  E  M  I  H  L  Q  L  P  F  L  L  Y  Y  H  L  L  D  F  R  S  M  L  R  F  E  I  T  N  V  *  F  S  A  V  Y  L  T  T  Y  A  *  V  F  C  L  T  T  V  F  T  E  S  A  D  S  H  G  T  S  S  G  T  W  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55448" stop="55723"/>
                    <exon start="55927" stop="56074"/>
                    <exon start="56205" stop="56404"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHISEARVSAALDKLAYMEELVNDRLLQERSTVESECTSSSASTSTGLLDTPKSKQPRRTLNVSGPVQDYSSRLKNFWYPVAFSADLKNDTMLPIDCFEQSWVIFRGADGKPGCVRNTCAHRACPLDLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLNVKIKALPCFEQEGMIWIWPGNDPPAATLPSLLPPSGFQIHAEVRNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="61711" PGL_stop="57125"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61711" e_stop="61546"/>
            <exon e_start="61465" e_stop="61314"/>
            <exon e_start="59908" e_stop="59793"/>
            <exon e_start="59470" e_stop="58687"/>
            <exon e_start="57608" e_stop="57594"/>
            <exon e_start="57130" e_stop="57125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.643" e_score="0.993"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.729" acc_prob="0.764" e_score="0.667"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="61711" e_stop="61546" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.643">
            <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61465" e_stop="61314" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59908" e_stop="59793" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="59470" e_stop="58687" e_length="784"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58686" i_stop="57609" i_length="1078"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="57608" e_stop="57594" e_length="15"/>
          </exon>
          <intron i_serial="5" don_prob="0.729" acc_prob="0.764">
            <gDNA_intron_boundary i_start="57593" i_stop="57131" i_length="463"/>
          </intron>
          <exon e_serial="6" e_score="0.833">
            <gDNA_exon_boundary e_start="57130" e_stop="57125" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61711" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61688" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="58687"/>
              <exon start="57608" stop="57594"/>
              <exon start="57130" stop="57125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61685" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61681" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61674" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61671" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61669" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61664" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61663" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61663" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61660" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61660" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61660" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61659" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61658" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61655" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61654" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61653" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61648" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61647" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61585" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTTATATAATGATTCATCACTAGCAGAGTCAAGGGGGAAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG : GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG : TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT : GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTACTGGGTGCGGCAAACAAGTATGATATTGTAGATTTGAAGAATGCTTGTGAGGAAAGTCTCCTAGAAGACATCAACTCGGGTAATGTCCTCGAAAGACTGCAAGAGGCCTGGCTTTACCAGCTAAATAAATTGAAAAAAGGTTGCTTGATGTATTTGTTCGATTTTGGCAAGATTTATGATGTTAGGGAGGAAATTAACAACTTCTTCAGACAGGCAGATAGAGATCTGATGCTAGAGATGTTTCAAGAAGTGCTCACAGTTTGGAAGCCTGCCTAACATGATGAGGTTTTTGCCACAGTTGTATATGGGATAACTCTATCTATTAATTACTAAGCTGTAGCTTTCTAAGAAAGCCATGTTGTATCTATATGCTAATCCTATGTAAATTTTGTTGAACTTATTAAGTGTATTATCTGGTATAAATTTATATAAATGGTTAATGTTCTGTTTGCAA : AAGGAAGAGAAAAAT : AAACAA</gDNA_template>
            <first_frame> N  F  I  *  *  F  I  T  S  R  V  K  G  E  E  E  G  G  *  Q  T  A  R  *  R  L  Y  Q  G  *  L  N  G  G  S  T  I  S  Q  H  L  L  T  K  D  L  T  L  L  K  L  V  Y  G  T   : G  I  C  Q  L  R  R  I  G  I  C  I  F  D  C  F  L  N  L  L  G  F  R  K  S  S  F  L  L  L  L  L  A  L  C  F  V  L  L  Q  L  E  P  I  G  D  L  I  Y  L  L  :  Y  M  R  G  C  F  E  Q  V  M  T  L  C  G  L  L  I  L  V  Y  K  V  D  L  S  L  M  L  S  S  L  T  *  R  S  T  P  Q  M :   V  E  K  E  N  L  Y  G  P  M  T  *  F  C  N  L  *  L  P  K  V  L  S  D  A  S  L  A  C  L  M  S  P  S  I  L  M  L  P  L  I  R  L  M  D  Q  C  K  L  T  E  R  Y  C  L  L  L  L  L  Y  S  T  A  C  S  F  T  I  S  G  R  K  S  P  L  *  S  T  *  K  T  C  Q  Q  N  H  A  Q  R  F  L  V  T  C  M  E  P  *  N  K  R  I  S  G  S  T  D  W  H  Y  W  V  R  Q  T  S  M  I  L  *  I  *  R  M  L  V  R  K  V  S  *  K  T  S  T  R  V  M  S  S  K  D  C  K  R  P  G  F  T  S  *  I  N  *  K  K  V  A  *  C  I  C  S  I  L  A  R  F  M  M  L  G  R  K  L  T  T  S  S  D  R  Q  I  E  I  *  C  *  R  C  F  K  K  C  S  Q  F  G  S  L  P  N  M  M  R  F  L  P  Q  L  Y  M  G  *  L  Y  L  L  I  T  K  L  *  L  S  K  K  A  M  L  Y  L  Y  A  N  P  M  *  I  L  L  N  L  L  S  V  L  S  G  I  N  L  Y  K  W  L  M  F  C  L  Q  :  K  E  E  K  N  :  K  Q </first_frame>
            <second_frame>  T  L  Y  N  D  S  S  L  A  E  S  R  G  K  K  K  E  D  D  R  Q  Q  G  R  D  S  I  K  V  S  S  M  E  D  R  Q  F  H  S  I  Y  L  Q  K  I  *  P  F  *  N  W  Y  M  E  L  :  A  S  V  N  *  E  E  S  V  F  V  Y  S  I  V  S  *  T  F  S  A  F  E  R  A  A  S  S  S  F  C  S  L  Y  A  S  C  Y  Y  N  W  N  Q  S  E  T  S  Y  I  S  C :   I  *  E  A  A  S  N  K  *  *  L  C  V  A  Y  *  F  L  F  T  R  S  I  C  H  *  C  *  V  P  *  P  E  D  L  H  P  K   : W  W  R  R  K  I  Y  M  A  Q  *  H  D  F  A  I  F  S  Y  P  K  Y  S  P  M  P  L  S  H  A  *  *  V  H  P  Y  *  C  Y  H  *  Y  G  *  W  I  S  A  S  S  Q  S  D  T  V  C  Y  F  S  C  I  P  Q  H  V  P  S  R  S  Q  G  E  R  V  L  Y  N  R  H  R  R  H  V  N  R  I  M  H  S  A  S  *  L  L  V  W  N  H  K  T  R  G  F  L  E  A  P  I  G  I  T  G  C  G  K  Q  V  *  Y  C  R  F  E  E  C  L  *  G  K  S  P  R  R  H  Q  L  G  *  C  P  R  K  T  A  R  G  L  A  L  P  A  K  *  I  E  K  R  L  L  D  V  F  V  R  F  W  Q  D  L  *  C  *  G  G  N  *  Q  L  L  Q  T  G  R  *  R  S  D  A  R  D  V  S  R  S  A  H  S  L  E  A  C  L  T  *  *  G  F  C  H  S  C  I  W  D  N  S  I  Y  *  L  L  S  C  S  F  L  R  K  P  C  C  I  Y  M  L  I  L  C  K  F  C  *  T  Y  *  V  Y  Y  L  V  *  I  Y  I  N  G  *  C  S  V  C  K :   R  K  R  K  I :   N   </second_frame>
            <third_frame>   L  Y  I  M  I  H  H  *  Q  S  Q  G  G  R  R  R  R  M  T  D  S  K  V  E  T  L  S  R  L  A  Q  W  R  I  D  N  F  T  A  S  T  Y  K  R  S  D  P  F  K  I  G  I  W  N  W :   H  L  S  I  E  K  N  R  Y  L  Y  I  R  L  F  P  E  P  S  R  L  S  K  E  Q  L  P  P  P  F  A  R  F  M  L  R  V  T  T  T  G  T  N  R  R  P  H  I  S  P   : V  Y  E  R  L  L  R  T  S  D  D  F  V  W  P  I  D  S  C  L  Q  G  R  F  V  I  D  V  E  F  L  D  L  K  I  Y  T  P  N  :  G  G  E  G  K  S  I  W  P  N  D  M  I  L  Q  S  L  A  T  Q  S  T  L  R  C  L  S  R  M  L  D  E  S  I  H  T  D  V  T  I  N  T  A  D  G  S  V  Q  A  H  R  A  I  L  S  A  T  S  P  V  F  H  S  M  F  L  H  D  L  R  E  K  E  S  S  I  I  D  I  E  D  M  S  T  E  S  C  T  A  L  L  S  Y  L  Y  G  T  I  K  Q  E  D  F  W  K  H  R  L  A  L  L  G  A  A  N  K  Y  D  I  V  D  L  K  N  A  C  E  E  S  L  L  E  D  I  N  S  G  N  V  L  E  R  L  Q  E  A  W  L  Y  Q  L  N  K  L  K  K  G  C  L  M  Y  L  F  D  F  G  K  I  Y  D  V  R  E  E  I  N  N  F  F  R  Q  A  D  R  D  L  M  L  E  M  F  Q  E  V  L  T  V  W  K  P  A  *  H  D  E  V  F  A  T  V  V  Y  G  I  T  L  S  I  N  Y  *  A  V  A  F  *  E  S  H  V  V  S  I  C  *  S  Y  V  N  F  V  E  L  I  K  C  I  I  W  Y  K  F  I  *  M  V  N  V  L  F  A   : K  G  R  E  K   : *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61685" stop="61546"/>
                    <exon start="61465" stop="61314"/>
                    <exon start="59908" stop="59793"/>
                    <exon start="59470" stop="58865"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSQGGRRRRMTDSKVETLSRLAQWRIDNFTASTYKRSDPFKIGIWNWHLSIEKNRYLYIRLFPEPSRLSKEQLPPPFARFMLRVTTTGTNRRPHISPVYERLLRTSDDFVWPIDSCLQGRFVIDVEFLDLKIYTPNGGEGKSIWPNDMILQSLATQSTLRCLSRMLDESIHTDVTINTADGSVQAHRAILSATSPVFHSMFLHDLREKESSIIDIEDMSTESCTALLSYLYGTIKQEDFWKHRLALLGAANKYDIVDLKNACEESLLEDINSGNVLERLQEAWLYQLNKLKKGCLMYLFDFGKIYDVREEINNFFRQADRDLMLEMFQEVLTVWKPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61663" e_stop="61546"/>
            <exon e_start="61465" e_stop="61314"/>
            <exon e_start="59908" e_stop="59691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.643" e_score="0.964"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.961"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="61663" e_stop="61546" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.643">
            <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="61465" e_stop="61314" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405"/>
          </intron>
          <exon e_serial="3" e_score="0.945">
            <gDNA_exon_boundary e_start="59908" e_stop="59691" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61663" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61657" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411506" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG : GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG : TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTT</gDNA_template>
            <first_frame> G  G  *  Q  T  A  R  *  R  L  Y  Q  G  *  L  N  G  G  S  T  I  S  Q  H  L  L  T  K  D  L  T  L  L  K  L  V  Y  G  T   : G  I  C  Q  L  R  R  I  G  I  C  I  F  D  C  F  L  N  L  L  G  F  R  K  S  S  F  L  L  L  L  L  A  L  C  F  V  L  L  Q  L  E  P  I  G  D  L  I  Y  L  L  :  Y  M  R  G  C  F  E  Q  V  M  T  L  C  G  L  L  I  L  V  Y  K  V  D  L  S  L  M  L  S  S  L  T  *  R  S  T  P  Q  M  *  V  L  D  I  L  K  C  S  S  V  C  L  I  C  T  T  I  *  D  Y  Y  M  K  W  F  S  D  K  L  P  I  *   </first_frame>
            <second_frame>  E  D  D  R  Q  Q  G  R  D  S  I  K  V  S  S  M  E  D  R  Q  F  H  S  I  Y  L  Q  K  I  *  P  F  *  N  W  Y  M  E  L  :  A  S  V  N  *  E  E  S  V  F  V  Y  S  I  V  S  *  T  F  S  A  F  E  R  A  A  S  S  S  F  C  S  L  Y  A  S  C  Y  Y  N  W  N  Q  S  E  T  S  Y  I  S  C :   I  *  E  A  A  S  N  K  *  *  L  C  V  A  Y  *  F  L  F  T  R  S  I  C  H  *  C  *  V  P  *  P  E  D  L  H  P  K  C  E  F  L  I  F  *  S  V  P  V  C  V  *  Y  A  R  L  Y  E  I  T  T  *  N  G  S  L  I  N  Y  L  S  S  </second_frame>
            <third_frame>   R  M  T  D  S  K  V  E  T  L  S  R  L  A  Q  W  R  I  D  N  F  T  A  S  T  Y  K  R  S  D  P  F  K  I  G  I  W  N  W :   H  L  S  I  E  K  N  R  Y  L  Y  I  R  L  F  P  E  P  S  R  L  S  K  E  Q  L  P  P  P  F  A  R  F  M  L  R  V  T  T  T  G  T  N  R  R  P  H  I  S  P   : V  Y  E  R  L  L  R  T  S  D  D  F  V  W  P  I  D  S  C  L  Q  G  R  F  V  I  D  V  E  F  L  D  L  K  I  Y  T  P  N  V  S  S  *  Y  S  E  V  F  Q  C  V  F  N  M  H  D  Y  M  R  L  L  H  E  M  V  L  *  *  T  T  Y  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61661" stop="61546"/>
                    <exon start="61465" stop="61314"/>
                    <exon start="59908" stop="59781"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMTDSKVETLSRLAQWRIDNFTASTYKRSDPFKIGIWNWHLSIEKNRYLYIRLFPEPSRLSKEQLPPPFARFMLRVTTTGTNRRPHISPVYERLLRTSDDFVWPIDSCLQGRFVIDVEFLDLKIYTPNVSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61621" stop="61546"/>
                    <exon start="61465" stop="61314"/>
                    <exon start="59908" stop="59810"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNGGSTISQHLLTKDLTLLKLVYGTGICQLRRIGICIFDCFLNLLGFRKSSFLLLLLALCFVLLQLEPIGDLIYLLYMRGCFEQVMTLCGLLILVYKVDLSLMLSSLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="73813" PGL_stop="64332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73813" e_stop="73670"/>
            <exon e_start="72711" e_stop="72625"/>
            <exon e_start="72458" e_stop="72346"/>
            <exon e_start="70819" e_stop="70703"/>
            <exon e_start="70618" e_stop="70522"/>
            <exon e_start="69582" e_stop="69509"/>
            <exon e_start="67822" e_stop="67769"/>
            <exon e_start="67668" e_stop="67567"/>
            <exon e_start="67385" e_stop="67327"/>
            <exon e_start="66416" e_stop="66206"/>
            <exon e_start="65507" e_stop="65092"/>
            <exon e_start="64350" e_stop="64332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.899" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.438" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.579"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="73813" e_stop="73670" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73669" i_stop="72712" i_length="958"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72711" e_stop="72625" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.899" acc_prob="0.966">
            <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72458" e_stop="72346" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.916">
            <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70819" e_stop="70703" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.817">
            <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70618" e_stop="70522" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.818" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70521" i_stop="69583" i_length="939"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69582" e_stop="69509" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.965">
            <gDNA_intron_boundary i_start="69508" i_stop="67823" i_length="1686"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67822" e_stop="67769" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.438" acc_prob="0.775">
            <gDNA_intron_boundary i_start="67768" i_stop="67669" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67668" e_stop="67567" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="67566" i_stop="67386" i_length="181"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67385" e_stop="67327" e_length="59"/>
          </exon>
          <intron i_serial="9" don_prob="0.977" acc_prob="0.975">
            <gDNA_intron_boundary i_start="67326" i_stop="66417" i_length="910"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="66416" e_stop="66206" e_length="211"/>
          </exon>
          <intron i_serial="10" don_prob="0.958" acc_prob="0.858">
            <gDNA_intron_boundary i_start="66205" i_stop="65508" i_length="698"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="65507" e_stop="65092" e_length="416"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="65091" i_stop="64351" i_length="741"/>
          </intron>
          <exon e_serial="12" e_score="0.579">
            <gDNA_exon_boundary e_start="64350" e_stop="64332" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73813" stop="73670"/>
              <exon start="72711" stop="72625"/>
              <exon start="72458" stop="72346"/>
              <exon start="70819" stop="70703"/>
              <exon start="70618" stop="70522"/>
              <exon start="69582" stop="69509"/>
              <exon start="67822" stop="67769"/>
              <exon start="67668" stop="67567"/>
              <exon start="67385" stop="67327"/>
              <exon start="66416" stop="66206"/>
              <exon start="65507" stop="65110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73748" stop="73670"/>
              <exon start="72711" stop="72625"/>
              <exon start="72458" stop="72346"/>
              <exon start="70819" stop="70703"/>
              <exon start="70618" stop="70522"/>
              <exon start="69582" stop="69509"/>
              <exon start="67822" stop="67769"/>
              <exon start="67668" stop="67567"/>
              <exon start="67385" stop="67327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73734" stop="73670"/>
              <exon start="72711" stop="72625"/>
              <exon start="72458" stop="72346"/>
              <exon start="70819" stop="70703"/>
              <exon start="70618" stop="70522"/>
              <exon start="69582" stop="69509"/>
              <exon start="67822" stop="67769"/>
              <exon start="67668" stop="67596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73733" stop="73670"/>
              <exon start="72711" stop="72625"/>
              <exon start="72458" stop="72346"/>
              <exon start="70819" stop="70779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73724" stop="73670"/>
              <exon start="72711" stop="72625"/>
              <exon start="72458" stop="72346"/>
              <exon start="70819" stop="70703"/>
              <exon start="70618" stop="70522"/>
              <exon start="69582" stop="69509"/>
              <exon start="67822" stop="67802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73722" stop="73670"/>
              <exon start="72711" stop="72625"/>
              <exon start="72458" stop="72346"/>
              <exon start="70819" stop="70703"/>
              <exon start="70618" stop="70605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73708" stop="73670"/>
              <exon start="72711" stop="72625"/>
              <exon start="72458" stop="72346"/>
              <exon start="70819" stop="70703"/>
              <exon start="70618" stop="70522"/>
              <exon start="69582" stop="69509"/>
              <exon start="67822" stop="67802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69575" stop="69509"/>
              <exon start="67822" stop="67769"/>
              <exon start="67668" stop="67567"/>
              <exon start="67385" stop="67327"/>
              <exon start="66416" stop="66276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66341" stop="66206"/>
              <exon start="65507" stop="65096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413915" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65491" stop="65092"/>
              <exon start="64350" stop="64332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65474" stop="65092"/>
              <exon start="64350" stop="64332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTAATAGACGGCTATTATAAATTGGGAAAATTGATTTCCTTAAAATTTCCCCCTTTTTCATTTCTTCCTTTACACAGTTTTTCTCGGGCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAG : ATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTG : ATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAG : ATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG : GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG : GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTT : GTGTGTTACTATCGCTATATGAGATTTTATCCTTCTGGCAGGTTCCTTTATAAG : AATTCATCACAAAAAGTCAAAGATGTAGCGAAGTACCTGAACTTCCGTGCCTCAAAAGCTGATTGTGTTTTTAAGGGGAATTACACTCTATCAGAGGATAAA : GTTGAAGCTGCTCTTTTGTACCCGGGAATGCGTCCAACTGTGTTGAGATTCCGCTTAAG : GTTGAGGGGTACAACCCAAGGTGCTAATAACAGAATGGATCTACTTGCTCTTCTTACAAGTGGCGTGAATGATAATGAGGTTAATGGCCCGGATGAAGACATTCTTGGAGTTGTCGAGAGGTGGGAAGAGGATGAAACACATAACCCAGATGTTCCAGCAATTTCACACAAGAGGGGTCTAACACCTTTTGTCTTTGTTTCATTTGAGGAG : GTGGAAACTTCAGTTCTAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTT : AACTGAAGTAACAATTAAA</gDNA_template>
            <first_frame> C  *  *  T  A  I  I  N  W  E  N  *  F  P  *  N  F  P  L  F  H  F  F  L  Y  T  V  F  L  G  L  D  I  Q  I  V  K  H  N  I  Q  N  Q  E  K  W  P  Q  :  I  T  Q  W  N  L  L  W  N  S  K  L  L  H  S  *  E  L  L  S  S  F  F  L  I  G  H  G  L  :  I  C  M  G  L  M  L  D  L  S  L  L  L  E  V  L  A  A  S  S  L  L  T  L  H  *  Y  T  E  Y  Y  L  M  N  C  F  L  R :   S  C  Q  K  R  P  H  T  P  W  V  R  Q  L  V  F  V  E  S  G  G  I  Q  F  G  T  L  Y  F  G  A  M  H  A  *  R  L  G  R :   F  L  D  W  *  K  T  I  R  S  F  T  *  S  M  M  V  H  G  E  K  C  G  F  *  D  Q  G  F  V  R  M  :  V  F  M  S  V  E  T  H  I  F  V  Q  E  *  L  S  G  R  S  L  I  Q  F  I  L :   C  V  T  I  A  I  *  D  F  I  L  L  A  G  S  F  I  R :   I  H  H  K  K  S  K  M  *  R  S  T  *  T  S  V  P  Q  K  L  I  V  F  L  R  G  I  T  L  Y  Q  R  I  K :   L  K  L  L  F  C  T  R  E  C  V  Q  L  C  *  D  S  A  *   : G  *  G  V  Q  P  K  V  L  I  T  E  W  I  Y  L  L  F  L  Q  V  A  *  M  I  M  R  L  M  A  R  M  K  T  F  L  E  L  S  R  G  G  K  R  M  K  H  I  T  Q  M  F  Q  Q  F  H  T  R  G  V  *  H  L  L  S  L  F  H  L  R  R :   W  K  L  Q  F  *  I  S  Q  W  K  K  W  I  I  M  F  L  V  K  N  W  I  K  Q  T  I  H  W  L  *  M  C  N  I  V  V  C  N  S  F  I  F  G  M  A  S  *  N  R  E  V  F  N  V  L  *  T  G  N  G  L  S  T  S  T  R  *  W  *  G  L  R  S  S  S  I  Y  F  A  C  G  T  Y  E  I  S  M  G  M  L  L  S  *  T  R  S  Y  R  A  I  E  D  Q  Y  N  T  G  L  L  R  V  Y  C  M  A  V  *  I  C  S  K  L  E  S  V  C  *  *  M  E  F  N  N  H  C  I  I   : *  L  K  *  Q  L   </first_frame>
            <second_frame>  A  N  R  R  L  L  *  I  G  K  I  D  F  L  K  I  S  P  F  F  I  S  S  F  T  Q  F  F  S  G  W  I  S  K  L  S  S  T  T  F  K  T  K  K  N  G  L  R :   L  H  S  G  T  C  C  G  T  R  N  C  C  T  V  E  S  F  S  V  H  F  S  S  *  A  M  A  * :   F  V  W  D  *  C  *  T  C  R  S  F  W  K  C  *  Q  Q  A  V  C  *  P  C  I  D  T  P  S  T  T  *  *  T  A  F  *   : D  L  V  K  N  D  P  I  H  L  G  *  G  S  L  C  L  S  K  V  E  V  Y  N  S  E  P  C  I  L  A  Q  C  M  P  K  G  L  A   : G  F  W  I  G  R  K  L  *  G  P  S  L  E  V  *  W  F  M  E  K  N  V  A  F  K  T  K  D  S  Y  G  W :   Y  L  C  Q  S  K  H  I  Y  S  C  R  N  S  *  V  E  D  H  *  S  S  S  S   : C  V  L  L  S  L  Y  E  I  L  S  F  W  Q  V  P  L  *   : E  F  I  T  K  S  Q  R  C  S  E  V  P  E  L  P  C  L  K  S  *  L  C  F  *  G  E  L  H  S  I  R  G  *   : S  *  S  C  S  F  V  P  G  N  A  S  N  C  V  E  I  P  L  K  :  V  E  G  Y  N  P  R  C  *  *  Q  N  G  S  T  C  S  S  Y  K  W  R  E  *  *  *  G  *  W  P  G  *  R  H  S  W  S  C  R  E  V  G  R  G  *  N  T  *  P  R  C  S  S  N  F  T  Q  E  G  S  N  T  F  C  L  C  F  I  *  G   : G  G  N  F  S  S  K  S  P  S  G  K  N  G  L  L  C  S  W  L  R  T  G  S  N  R  Q  S  I  G  C  K  C  V  T  L  L  F  V  T  L  L  F  L  A  W  H  L  R  I  G  K  F  S  M  C  C  E  Q  E  M  V  S  L  P  P  R  G  S  G  K  V  C  V  H  P  P  Y  T  L  L  V  G  L  M  R  F  Q  W  V  C  C  C  R  K  Q  D  P  I  E  Q  *  K  T  S  I  I  P  V  F  C  V  C  I  V  W  Q  F  E  Y  V  P  S  W  N  L  F  A  D  K  W  S  S  I  I  I  V  L  F  :  N  *  S  N  N  *  </second_frame>
            <third_frame>   L  I  D  G  Y  Y  K  L  G  K  L  I  S  L  K  F  P  P  F  S  F  L  P  L  H  S  F  S  R  A  G  Y  P  N  C  Q  A  Q  H  S  K  P  R  K  M  A  S   : D  Y  T  V  E  L  A  V  E  L  E  T  A  A  Q  L  R  A  S  Q  F  I  F  P  H  R  P  W  L   : D  L  Y  G  I  N  V  R  P  V  A  P  F  G  S  A  S  S  K  Q  F  V  D  P  A  L  I  H  R  V  L  P  D  E  L  L  F  E  :  I  L  S  K  T  T  P  Y  T  L  G  K  A  A  C  V  C  R  K  W  R  Y  T  I  R  N  P  V  F  W  R  N  A  C  L  K  A  W  Q  :  V  S  G  L  V  E  N  Y  K  V  L  H  L  K  Y  D  G  S  W  R  K  M  W  L  L  R  P  R  I  R  T  D   : G  I  Y  V  S  R  N  T  Y  I  R  A  G  I  A  E  W  K  I  T  N  P  V  H  L  :  V  C  Y  Y  R  Y  M  R  F  Y  P  S  G  R  F  L  Y  K  :  N  S  S  Q  K  V  K  D  V  A  K  Y  L  N  F  R  A  S  K  A  D  C  V  F  K  G  N  Y  T  L  S  E  D  K  :  V  E  A  A  L  L  Y  P  G  M  R  P  T  V  L  R  F  R  L  R :   L  R  G  T  T  Q  G  A  N  N  R  M  D  L  L  A  L  L  T  S  G  V  N  D  N  E  V  N  G  P  D  E  D  I  L  G  V  V  E  R  W  E  E  D  E  T  H  N  P  D  V  P  A  I  S  H  K  R  G  L  T  P  F  V  F  V  S  F  E  E  :  V  E  T  S  V  L  N  L  P  V  E  K  M  D  Y  Y  V  P  G  *  E  L  D  Q  T  D  N  P  L  V  V  N  V  *  H  C  C  L  *  L  F  Y  F  W  H  G  I  L  E  S  G  S  F  Q  C  V  V  N  R  K  W  S  L  Y  L  H  E  V  V  V  R  S  A  F  I  L  H  I  L  C  L  W  D  L  *  D  F  N  G  Y  V  V  V  V  N  K  I  L  S  S  N  R  R  P  V  *  Y  R  S  S  A  C  V  L  Y  G  S  L  N  M  F  Q  V  G  I  C  L  L  I  N  G  V  Q  *  S  L  Y  Y  L :   T  E  V  T  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73811" stop="73670"/>
                    <exon start="72711" stop="72625"/>
                    <exon start="72458" stop="72346"/>
                    <exon start="70819" stop="70703"/>
                    <exon start="70618" stop="70522"/>
                    <exon start="69582" stop="69509"/>
                    <exon start="67822" stop="67769"/>
                    <exon start="67668" stop="67567"/>
                    <exon start="67385" stop="67327"/>
                    <exon start="66416" stop="66206"/>
                    <exon start="65507" stop="65448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIDGYYKLGKLISLKFPPFSFLPLHSFSRAGYPNCQAQHSKPRKMASDYTVELAVELETAAQLRASQFIFPHRPWLDLYGINVRPVAPFGSASSKQFVDPALIHRVLPDELLFEILSKTTPYTLGKAACVCRKWRYTIRNPVFWRNACLKAWQVSGLVENYKVLHLKYDGSWRKMWLLRPRIRTDGIYVSRNTYIRAGIAEWKITNPVHLVCYYRYMRFYPSGRFLYKNSSQKVKDVAKYLNFRASKADCVFKGNYTLSEDKVEAALLYPGMRPTVLRFRLRLRGTTQGANNRMDLLALLTSGVNDNEVNGPDEDILGVVERWEEDETHNPDVPAISHKRGLTPFVFVSFEEVETSVLNLPVEKMDYYVPG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73729" e_stop="73670"/>
            <exon e_start="72702" e_stop="72625"/>
            <exon e_start="72458" e_stop="72346"/>
            <exon e_start="70819" e_stop="70703"/>
            <exon e_start="70618" e_stop="70522"/>
            <exon e_start="69582" e_stop="69509"/>
            <exon e_start="67822" e_stop="67769"/>
            <exon e_start="67668" e_stop="67567"/>
            <exon e_start="67385" e_stop="67327"/>
            <exon e_start="66416" e_stop="66206"/>
            <exon e_start="65507" e_stop="65092"/>
            <exon e_start="64350" e_stop="64332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.702" e_score="0.867"/>
          <exon-intron don_prob="0.899" acc_prob="0.966" e_score="0.974"/>
          <exon-intron don_prob="0.999" acc_prob="0.916" e_score="0.956"/>
          <exon-intron don_prob="0.000" acc_prob="0.817" e_score="0.983"/>
          <exon-intron don_prob="0.818" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.987" acc_prob="0.965" e_score="0.985"/>
          <exon-intron don_prob="0.438" acc_prob="0.775" e_score="0.963"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="0.980"/>
          <exon-intron don_prob="0.977" acc_prob="0.975" e_score="0.949"/>
          <exon-intron don_prob="0.958" acc_prob="0.858" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.579"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.867">
            <gDNA_exon_boundary e_start="73729" e_stop="73670" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.702">
            <gDNA_intron_boundary i_start="73669" i_stop="72703" i_length="967"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="72702" e_stop="72625" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.899" acc_prob="0.966">
            <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="0.956">
            <gDNA_exon_boundary e_start="72458" e_stop="72346" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.916">
            <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="70819" e_stop="70703" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.817">
            <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="70618" e_stop="70522" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.818" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70521" i_stop="69583" i_length="939"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="69582" e_stop="69509" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.965">
            <gDNA_intron_boundary i_start="69508" i_stop="67823" i_length="1686"/>
          </intron>
          <exon e_serial="7" e_score="0.963">
            <gDNA_exon_boundary e_start="67822" e_stop="67769" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.438" acc_prob="0.775">
            <gDNA_intron_boundary i_start="67768" i_stop="67669" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="0.980">
            <gDNA_exon_boundary e_start="67668" e_stop="67567" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="67566" i_stop="67386" i_length="181"/>
          </intron>
          <exon e_serial="9" e_score="0.949">
            <gDNA_exon_boundary e_start="67385" e_stop="67327" e_length="59"/>
          </exon>
          <intron i_serial="9" don_prob="0.977" acc_prob="0.975">
            <gDNA_intron_boundary i_start="67326" i_stop="66417" i_length="910"/>
          </intron>
          <exon e_serial="10" e_score="0.993">
            <gDNA_exon_boundary e_start="66416" e_stop="66206" e_length="211"/>
          </exon>
          <intron i_serial="10" don_prob="0.958" acc_prob="0.858">
            <gDNA_intron_boundary i_start="66205" i_stop="65508" i_length="698"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="65507" e_stop="65092" e_length="416"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="65091" i_stop="64351" i_length="741"/>
          </intron>
          <exon e_serial="12" e_score="0.579">
            <gDNA_exon_boundary e_start="64350" e_stop="64332" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73729" stop="73670"/>
              <exon start="72702" stop="72625"/>
              <exon start="72458" stop="72346"/>
              <exon start="70819" stop="70703"/>
              <exon start="70618" stop="70522"/>
              <exon start="69582" stop="69558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69575" stop="69509"/>
              <exon start="67822" stop="67769"/>
              <exon start="67668" stop="67567"/>
              <exon start="67385" stop="67327"/>
              <exon start="66416" stop="66276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66341" stop="66206"/>
              <exon start="65507" stop="65096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413915" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65491" stop="65092"/>
              <exon start="64350" stop="64332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65474" stop="65092"/>
              <exon start="64350" stop="64332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGGGCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAG : TGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTG : ATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAG : ATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG : GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG : GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTT : GTGTGTTACTATCGCTATATGAGATTTTATCCTTCTGGCAGGTTCCTTTATAAG : AATTCATCACAAAAAGTCAAAGATGTAGCGAAGTACCTGAACTTCCGTGCCTCAAAAGCTGATTGTGTTTTTAAGGGGAATTACACTCTATCAGAGGATAAA : GTTGAAGCTGCTCTTTTGTACCCGGGAATGCGTCCAACTGTGTTGAGATTCCGCTTAAG : GTTGAGGGGTACAACCCAAGGTGCTAATAACAGAATGGATCTACTTGCTCTTCTTACAAGTGGCGTGAATGATAATGAGGTTAATGGCCCGGATGAAGACATTCTTGGAGTTGTCGAGAGGTGGGAAGAGGATGAAACACATAACCCAGATGTTCCAGCAATTTCACACAAGAGGGGTCTAACACCTTTTGTCTTTGTTTCATTTGAGGAG : GTGGAAACTTCAGTTCTAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTT : AACTGAAGTAACAATTAAA</gDNA_template>
            <first_frame> L  G  L  D  I  Q  I  V  K  H  N  I  Q  N  Q  E  K  W  P  Q  :  W  N  L  L  W  N  S  K  L  L  H  S  *  E  L  L  S  S  F  F  L  I  G  H  G  L  :  I  C  M  G  L  M  L  D  L  S  L  L  L  E  V  L  A  A  S  S  L  L  T  L  H  *  Y  T  E  Y  Y  L  M  N  C  F  L  R :   S  C  Q  K  R  P  H  T  P  W  V  R  Q  L  V  F  V  E  S  G  G  I  Q  F  G  T  L  Y  F  G  A  M  H  A  *  R  L  G  R :   F  L  D  W  *  K  T  I  R  S  F  T  *  S  M  M  V  H  G  E  K  C  G  F  *  D  Q  G  F  V  R  M  :  V  F  M  S  V  E  T  H  I  F  V  Q  E  *  L  S  G  R  S  L  I  Q  F  I  L :   C  V  T  I  A  I  *  D  F  I  L  L  A  G  S  F  I  R :   I  H  H  K  K  S  K  M  *  R  S  T  *  T  S  V  P  Q  K  L  I  V  F  L  R  G  I  T  L  Y  Q  R  I  K :   L  K  L  L  F  C  T  R  E  C  V  Q  L  C  *  D  S  A  *   : G  *  G  V  Q  P  K  V  L  I  T  E  W  I  Y  L  L  F  L  Q  V  A  *  M  I  M  R  L  M  A  R  M  K  T  F  L  E  L  S  R  G  G  K  R  M  K  H  I  T  Q  M  F  Q  Q  F  H  T  R  G  V  *  H  L  L  S  L  F  H  L  R  R :   W  K  L  Q  F  *  I  S  Q  W  K  K  W  I  I  M  F  L  V  K  N  W  I  K  Q  T  I  H  W  L  *  M  C  N  I  V  V  C  N  S  F  I  F  G  M  A  S  *  N  R  E  V  F  N  V  L  *  T  G  N  G  L  S  T  S  T  R  *  W  *  G  L  R  S  S  S  I  Y  F  A  C  G  T  Y  E  I  S  M  G  M  L  L  S  *  T  R  S  Y  R  A  I  E  D  Q  Y  N  T  G  L  L  R  V  Y  C  M  A  V  *  I  C  S  K  L  E  S  V  C  *  *  M  E  F  N  N  H  C  I  I   : *  L  K  *  Q  L   </first_frame>
            <second_frame>  S  G  W  I  S  K  L  S  S  T  T  F  K  T  K  K  N  G  L  S :   G  T  C  C  G  T  R  N  C  C  T  V  E  S  F  S  V  H  F  S  S  *  A  M  A  * :   F  V  W  D  *  C  *  T  C  R  S  F  W  K  C  *  Q  Q  A  V  C  *  P  C  I  D  T  P  S  T  T  *  *  T  A  F  *   : D  L  V  K  N  D  P  I  H  L  G  *  G  S  L  C  L  S  K  V  E  V  Y  N  S  E  P  C  I  L  A  Q  C  M  P  K  G  L  A   : G  F  W  I  G  R  K  L  *  G  P  S  L  E  V  *  W  F  M  E  K  N  V  A  F  K  T  K  D  S  Y  G  W :   Y  L  C  Q  S  K  H  I  Y  S  C  R  N  S  *  V  E  D  H  *  S  S  S  S   : C  V  L  L  S  L  Y  E  I  L  S  F  W  Q  V  P  L  *   : E  F  I  T  K  S  Q  R  C  S  E  V  P  E  L  P  C  L  K  S  *  L  C  F  *  G  E  L  H  S  I  R  G  *   : S  *  S  C  S  F  V  P  G  N  A  S  N  C  V  E  I  P  L  K  :  V  E  G  Y  N  P  R  C  *  *  Q  N  G  S  T  C  S  S  Y  K  W  R  E  *  *  *  G  *  W  P  G  *  R  H  S  W  S  C  R  E  V  G  R  G  *  N  T  *  P  R  C  S  S  N  F  T  Q  E  G  S  N  T  F  C  L  C  F  I  *  G   : G  G  N  F  S  S  K  S  P  S  G  K  N  G  L  L  C  S  W  L  R  T  G  S  N  R  Q  S  I  G  C  K  C  V  T  L  L  F  V  T  L  L  F  L  A  W  H  L  R  I  G  K  F  S  M  C  C  E  Q  E  M  V  S  L  P  P  R  G  S  G  K  V  C  V  H  P  P  Y  T  L  L  V  G  L  M  R  F  Q  W  V  C  C  C  R  K  Q  D  P  I  E  Q  *  K  T  S  I  I  P  V  F  C  V  C  I  V  W  Q  F  E  Y  V  P  S  W  N  L  F  A  D  K  W  S  S  I  I  I  V  L  F  :  N  *  S  N  N  *  </second_frame>
            <third_frame>   R  A  G  Y  P  N  C  Q  A  Q  H  S  K  P  R  K  M  A  S   : V  E  L  A  V  E  L  E  T  A  A  Q  L  R  A  S  Q  F  I  F  P  H  R  P  W  L   : D  L  Y  G  I  N  V  R  P  V  A  P  F  G  S  A  S  S  K  Q  F  V  D  P  A  L  I  H  R  V  L  P  D  E  L  L  F  E  :  I  L  S  K  T  T  P  Y  T  L  G  K  A  A  C  V  C  R  K  W  R  Y  T  I  R  N  P  V  F  W  R  N  A  C  L  K  A  W  Q  :  V  S  G  L  V  E  N  Y  K  V  L  H  L  K  Y  D  G  S  W  R  K  M  W  L  L  R  P  R  I  R  T  D   : G  I  Y  V  S  R  N  T  Y  I  R  A  G  I  A  E  W  K  I  T  N  P  V  H  L  :  V  C  Y  Y  R  Y  M  R  F  Y  P  S  G  R  F  L  Y  K  :  N  S  S  Q  K  V  K  D  V  A  K  Y  L  N  F  R  A  S  K  A  D  C  V  F  K  G  N  Y  T  L  S  E  D  K  :  V  E  A  A  L  L  Y  P  G  M  R  P  T  V  L  R  F  R  L  R :   L  R  G  T  T  Q  G  A  N  N  R  M  D  L  L  A  L  L  T  S  G  V  N  D  N  E  V  N  G  P  D  E  D  I  L  G  V  V  E  R  W  E  E  D  E  T  H  N  P  D  V  P  A  I  S  H  K  R  G  L  T  P  F  V  F  V  S  F  E  E  :  V  E  T  S  V  L  N  L  P  V  E  K  M  D  Y  Y  V  P  G  *  E  L  D  Q  T  D  N  P  L  V  V  N  V  *  H  C  C  L  *  L  F  Y  F  W  H  G  I  L  E  S  G  S  F  Q  C  V  V  N  R  K  W  S  L  Y  L  H  E  V  V  V  R  S  A  F  I  L  H  I  L  C  L  W  D  L  *  D  F  N  G  Y  V  V  V  V  N  K  I  L  S  S  N  R  R  P  V  *  Y  R  S  S  A  C  V  L  Y  G  S  L  N  M  F  Q  V  G  I  C  L  L  I  N  G  V  Q  *  S  L  Y  Y  L :   T  E  V  T  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73727" stop="73670"/>
                    <exon start="72702" stop="72625"/>
                    <exon start="72458" stop="72346"/>
                    <exon start="70819" stop="70703"/>
                    <exon start="70618" stop="70522"/>
                    <exon start="69582" stop="69509"/>
                    <exon start="67822" stop="67769"/>
                    <exon start="67668" stop="67567"/>
                    <exon start="67385" stop="67327"/>
                    <exon start="66416" stop="66206"/>
                    <exon start="65507" stop="65448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAGYPNCQAQHSKPRKMASVELAVELETAAQLRASQFIFPHRPWLDLYGINVRPVAPFGSASSKQFVDPALIHRVLPDELLFEILSKTTPYTLGKAACVCRKWRYTIRNPVFWRNACLKAWQVSGLVENYKVLHLKYDGSWRKMWLLRPRIRTDGIYVSRNTYIRAGIAEWKITNPVHLVCYYRYMRFYPSGRFLYKNSSQKVKDVAKYLNFRASKADCVFKGNYTLSEDKVEAALLYPGMRPTVLRFRLRLRGTTQGANNRMDLLALLTSGVNDNEVNGPDEDILGVVERWEEDETHNPDVPAISHKRGLTPFVFVSFEEVETSVLNLPVEKMDYYVPG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73733" e_stop="73670"/>
            <exon e_start="72711" e_stop="72625"/>
            <exon e_start="72458" e_stop="72346"/>
            <exon e_start="70819" e_stop="70703"/>
            <exon e_start="70618" e_stop="70522"/>
            <exon e_start="69582" e_stop="69507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.962"/>
          <exon-intron don_prob="0.899" acc_prob="0.966" e_score="0.977"/>
          <exon-intron don_prob="0.999" acc_prob="0.916" e_score="0.956"/>
          <exon-intron don_prob="0.000" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="73733" e_stop="73670" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73669" i_stop="72712" i_length="958"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="72711" e_stop="72625" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.899" acc_prob="0.966">
            <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="0.956">
            <gDNA_exon_boundary e_start="72458" e_stop="72346" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.916">
            <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70819" e_stop="70703" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.817">
            <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70618" e_stop="70522" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.818" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70521" i_stop="69583" i_length="939"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69582" e_stop="69507" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73733" stop="73670"/>
              <exon start="72711" stop="72625"/>
              <exon start="72458" stop="72346"/>
              <exon start="70819" stop="70779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73722" stop="73670"/>
              <exon start="72711" stop="72625"/>
              <exon start="72458" stop="72346"/>
              <exon start="70819" stop="70703"/>
              <exon start="70618" stop="70605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72422" stop="72346"/>
              <exon start="70819" stop="70703"/>
              <exon start="70618" stop="70522"/>
              <exon start="69582" stop="69507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTCGGGCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAG : ATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTG : ATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAG : ATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG : GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG : GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGT</gDNA_template>
            <first_frame> F  S  R  A  G  Y  P  N  C  Q  A  Q  H  S  K  P  R  K  M  A  S   : D  Y  T  V  E  L  A  V  E  L  E  T  A  A  Q  L  R  A  S  Q  F  I  F  P  H  R  P  W  L   : D  L  Y  G  I  N  V  R  P  V  A  P  F  G  S  A  S  S  K  Q  F  V  D  P  A  L  I  H  R  V  L  P  D  E  L  L  F  E  :  I  L  S  K  T  T  P  Y  T  L  G  K  A  A  C  V  C  R  K  W  R  Y  T  I  R  N  P  V  F  W  R  N  A  C  L  K  A  W  Q  :  V  S  G  L  V  E  N  Y  K  V  L  H  L  K  Y  D  G  S  W  R  K  M  W  L  L  R  P  R  I  R  T  D   : G  I  Y  V  S  R  N  T  Y  I  R  A  G  I  A  E  W  K  I  T  N  P  V  H  L   </first_frame>
            <second_frame>  F  L  G  L  D  I  Q  I  V  K  H  N  I  Q  N  Q  E  K  W  P  Q  :  I  T  Q  W  N  L  L  W  N  S  K  L  L  H  S  *  E  L  L  S  S  F  F  L  I  G  H  G  L  :  I  C  M  G  L  M  L  D  L  S  L  L  L  E  V  L  A  A  S  S  L  L  T  L  H  *  Y  T  E  Y  Y  L  M  N  C  F  L  R :   S  C  Q  K  R  P  H  T  P  W  V  R  Q  L  V  F  V  E  S  G  G  I  Q  F  G  T  L  Y  F  G  A  M  H  A  *  R  L  G  R :   F  L  D  W  *  K  T  I  R  S  F  T  *  S  M  M  V  H  G  E  K  C  G  F  *  D  Q  G  F  V  R  M  :  V  F  M  S  V  E  T  H  I  F  V  Q  E  *  L  S  G  R  S  L  I  Q  F  I  L  </second_frame>
            <third_frame>   F  S  G  W  I  S  K  L  S  S  T  T  F  K  T  K  K  N  G  L  R :   L  H  S  G  T  C  C  G  T  R  N  C  C  T  V  E  S  F  S  V  H  F  S  S  *  A  M  A  * :   F  V  W  D  *  C  *  T  C  R  S  F  W  K  C  *  Q  Q  A  V  C  *  P  C  I  D  T  P  S  T  T  *  *  T  A  F  *   : D  L  V  K  N  D  P  I  H  L  G  *  G  S  L  C  L  S  K  V  E  V  Y  N  S  E  P  C  I  L  A  Q  C  M  P  K  G  L  A   : G  F  W  I  G  R  K  L  *  G  P  S  L  E  V  *  W  F  M  E  K  N  V  A  F  K  T  K  D  S  Y  G  W :   Y  L  C  Q  S  K  H  I  Y  S  C  R  N  S  *  V  E  D  H  *  S  S  S  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73733" stop="73670"/>
                    <exon start="72711" stop="72625"/>
                    <exon start="72458" stop="72346"/>
                    <exon start="70819" stop="70703"/>
                    <exon start="70618" stop="70522"/>
                    <exon start="69582" stop="69509"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSRAGYPNCQAQHSKPRKMASDYTVELAVELETAAQLRASQFIFPHRPWLDLYGINVRPVAPFGSASSKQFVDPALIHRVLPDELLFEILSKTTPYTLGKAACVCRKWRYTIRNPVFWRNACLKAWQVSGLVENYKVLHLKYDGSWRKMWLLRPRIRTDGIYVSRNTYIRAGIAEWKITNPVHL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="68955" e_stop="68582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="68955" e_stop="68582" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68955" stop="68582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGTGCTACTTATGGGGGTTGAACTTTTCCCCTATTTGGTGGAAGGTTGTGTGCACTCACCAAGTGAAGCTTCACATATACAAAGGAAGGTGAGGGTATATATGTGGATGCTAAGGGTGCTCTACGAATATCATGTATACTAAAACTATTTCTGCTACCAGCATTGCTAACATCCTTAACAAACCTTACTACTCAGAACGCCTTCAAATGAGAGACCCTTGCTTTATTTCCCACCTTCTTGTTAATATCTTGTGCCACTACCCTCTTTATCCAACCAAATATCATGACCCGCATTTAGGGATTCATGACCGGCACCAGGCACCTGACTAACTACCCTTATCAAGCAAACCACTAAACTAACAACTGGTTAACT</gDNA_template>
            <first_frame> Q  V  L  L  M  G  V  E  L  F  P  Y  L  V  E  G  C  V  H  S  P  S  E  A  S  H  I  Q  R  K  V  R  V  Y  M  W  M  L  R  V  L  Y  E  Y  H  V  Y  *  N  Y  F  C  Y  Q  H  C  *  H  P  *  Q  T  L  L  L  R  T  P  S  N  E  R  P  L  L  Y  F  P  P  S  C  *  Y  L  V  P  L  P  S  L  S  N  Q  I  S  *  P  A  F  R  D  S  *  P  A  P  G  T  *  L  T  T  L  I  K  Q  T  T  K  L  T  T  G  *   </first_frame>
            <second_frame>  K  C  Y  L  W  G  L  N  F  S  P  I  W  W  K  V  V  C  T  H  Q  V  K  L  H  I  Y  K  G  R  *  G  Y  I  C  G  C  *  G  C  S  T  N  I  M  Y  T  K  T  I  S  A  T  S  I  A  N  I  L  N  K  P  Y  Y  S  E  R  L  Q  M  R  D  P  C  F  I  S  H  L  L  V  N  I  L  C  H  Y  P  L  Y  P  T  K  Y  H  D  P  H  L  G  I  H  D  R  H  Q  A  P  D  *  L  P  L  S  S  K  P  L  N  *  Q  L  V  N  </second_frame>
            <third_frame>   S  A  T  Y  G  G  *  T  F  P  L  F  G  G  R  L  C  A  L  T  K  *  S  F  T  Y  T  K  E  G  E  G  I  Y  V  D  A  K  G  A  L  R  I  S  C  I  L  K  L  F  L  L  P  A  L  L  T  S  L  T  N  L  T  T  Q  N  A  F  K  *  E  T  L  A  L  F  P  T  F  L  L  I  S  C  A  T  T  L  F  I  Q  P  N  I  M  T  R  I  *  G  F  M  T  G  T  R  H  L  T  N  Y  P  Y  Q  A  N  H  *  T  N  N  W  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68840" stop="68625"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCSTNIMYTKTISATSIANILNKPYYSERLQMRDPCFISHLLVNILCHYPLYPTKYHDPHLGIHDRHQAPD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="79848" PGL_stop="79274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79848" e_stop="79274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="79848" e_stop="79274" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79848" stop="79274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTGGTCTTGACTCTTCTAATAAATGTGAATTTGTCAAATATCTTGAACAGGGTTCTGATGATATTACAAACGATGAAGGTATACCACAACTATTGAATTGATGGAGGAACCGTGAAACTCAATTTTCAAAACTTAGTAGGATGGTGAAGGATGTGCTTTCAATTCAAGGATCATCAGTAGCTTCGGAGGCAACTTTCAGTGCAACAAGATTTCAAATTGGAGACCACAAATATTCGTCAGCAGAAGACAACTTAGAGATATCAGTGTTATTTAGAGATTGGATAAATGCTGAGCAGAGAAATCAAGGACTTTCAAAGTTAGATAGTCAATTTGAACTTTCTATAGATTCAGCTATTGAATGTTGTAGTGATGATGGCATCGAACTTCAAGATCGTAAACGAGCGTTACAAAGACCAAAATTTGATTATAATCAATCTATAGCTGAGTTAGAAAAAGAATTTACGGGACTATACAACTATTAGTATTACATCCGAAACTTAGTTGAAACAGAACCCTTTCTAAAAGGTGGCTATGTAAACTATGTACTCTACTAATAGTTATAAATTGAAAT</gDNA_template>
            <first_frame> K  L  G  L  D  S  S  N  K  C  E  F  V  K  Y  L  E  Q  G  S  D  D  I  T  N  D  E  G  I  P  Q  L  L  N  *  W  R  N  R  E  T  Q  F  S  K  L  S  R  M  V  K  D  V  L  S  I  Q  G  S  S  V  A  S  E  A  T  F  S  A  T  R  F  Q  I  G  D  H  K  Y  S  S  A  E  D  N  L  E  I  S  V  L  F  R  D  W  I  N  A  E  Q  R  N  Q  G  L  S  K  L  D  S  Q  F  E  L  S  I  D  S  A  I  E  C  C  S  D  D  G  I  E  L  Q  D  R  K  R  A  L  Q  R  P  K  F  D  Y  N  Q  S  I  A  E  L  E  K  E  F  T  G  L  Y  N  Y  *  Y  Y  I  R  N  L  V  E  T  E  P  F  L  K  G  G  Y  V  N  Y  V  L  Y  *  *  L  *  I  E   </first_frame>
            <second_frame>  N  L  V  L  T  L  L  I  N  V  N  L  S  N  I  L  N  R  V  L  M  I  L  Q  T  M  K  V  Y  H  N  Y  *  I  D  G  G  T  V  K  L  N  F  Q  N  L  V  G  W  *  R  M  C  F  Q  F  K  D  H  Q  *  L  R  R  Q  L  S  V  Q  Q  D  F  K  L  E  T  T  N  I  R  Q  Q  K  T  T  *  R  Y  Q  C  Y  L  E  I  G  *  M  L  S  R  E  I  K  D  F  Q  S  *  I  V  N  L  N  F  L  *  I  Q  L  L  N  V  V  V  M  M  A  S  N  F  K  I  V  N  E  R  Y  K  D  Q  N  L  I  I  I  N  L  *  L  S  *  K  K  N  L  R  D  Y  T  T  I  S  I  T  S  E  T  *  L  K  Q  N  P  F  *  K  V  A  M  *  T  M  Y  S  T  N  S  Y  K  L  K  </second_frame>
            <third_frame>   T  W  S  *  L  F  *  *  M  *  I  C  Q  I  S  *  T  G  F  *  *  Y  Y  K  R  *  R  Y  T  T  T  I  E  L  M  E  E  P  *  N  S  I  F  K  T  *  *  D  G  E  G  C  A  F  N  S  R  I  I  S  S  F  G  G  N  F  Q  C  N  K  I  S  N  W  R  P  Q  I  F  V  S  R  R  Q  L  R  D  I  S  V  I  *  R  L  D  K  C  *  A  E  K  S  R  T  F  K  V  R  *  S  I  *  T  F  Y  R  F  S  Y  *  M  L  *  *  *  W  H  R  T  S  R  S  *  T  S  V  T  K  T  K  I  *  L  *  S  I  Y  S  *  V  R  K  R  I  Y  G  T  I  Q  L  L  V  L  H  P  K  L  S  *  N  R  T  L  S  K  R  W  L  C  K  L  C  T  L  L  I  V  I  N  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79743" stop="79363"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WRNRETQFSKLSRMVKDVLSIQGSSVASEATFSATRFQIGDHKYSSAEDNLEISVLFRDWINAEQRNQGLSKLDSQFELSIDSAIECCSDDGIELQDRKRALQRPKFDYNQSIAELEKEFTGLYNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="79358" PGL_stop="79933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79358" e_stop="79933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="79358" e_stop="79933" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79358" stop="79933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426698" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATACTAATAGTTGTATAGTCCCGTAAATTCTTTTTCTAACTCAGCTATAGATTGATTATAATCAAATTTTGGTCTTTGTAACGCTCGTTTACGATCTTGAAGTTCGATGCCATCATCACTACAACATTCAATAGCTGAATCTATAGAAAGTTCAAATTGACTATCTAACTTTGAAAGTCCTTGATTTCTCTGCTCAGCATTTATCCAATCTCTAAATAACACTGATATCTCTAAGTTGTCTTCTGCTGACGAATATTTGTGGTCTCCAATTTGAAATCTTGTTGCACTGAAAGTTGCCTCCGAAGCTACTGATGATCCTTGAATTGAAAGCACATCCTTCACCATCCTACTAAGTTTTGAAAATTGAGTTTCACGGTTCCTCCATCAATTCAATAGTTGTGGTATACCTTCATCGTTTGTAATATCATCAGAACCCTGTTCAAGATATTTGACAAATTCACATTTATTAGAAGAGTCAAGACCAAGTTTATGTTTCATTCGTCCATGAGCACCTACTTGAGGCATAGACGTTTGAGGATTTTCAACATTATCTAAGGAAGAATATTTATCATAC</gDNA_template>
            <first_frame> *  Y  *  *  L  Y  S  P  V  N  S  F  S  N  S  A  I  D  *  L  *  S  N  F  G  L  C  N  A  R  L  R  S  *  S  S  M  P  S  S  L  Q  H  S  I  A  E  S  I  E  S  S  N  *  L  S  N  F  E  S  P  *  F  L  C  S  A  F  I  Q  S  L  N  N  T  D  I  S  K  L  S  S  A  D  E  Y  L  W  S  P  I  *  N  L  V  A  L  K  V  A  S  E  A  T  D  D  P  *  I  E  S  T  S  F  T  I  L  L  S  F  E  N  *  V  S  R  F  L  H  Q  F  N  S  C  G  I  P  S  S  F  V  I  S  S  E  P  C  S  R  Y  L  T  N  S  H  L  L  E  E  S  R  P  S  L  C  F  I  R  P  *  A  P  T  *  G  I  D  V  *  G  F  S  T  L  S  K  E  E  Y  L  S  Y </first_frame>
            <second_frame>  N  T  N  S  C  I  V  P  *  I  L  F  L  T  Q  L  *  I  D  Y  N  Q  I  L  V  F  V  T  L  V  Y  D  L  E  V  R  C  H  H  H  Y  N  I  Q  *  L  N  L  *  K  V  Q  I  D  Y  L  T  L  K  V  L  D  F  S  A  Q  H  L  S  N  L  *  I  T  L  I  S  L  S  C  L  L  L  T  N  I  C  G  L  Q  F  E  I  L  L  H  *  K  L  P  P  K  L  L  M  I  L  E  L  K  A  H  P  S  P  S  Y  *  V  L  K  I  E  F  H  G  S  S  I  N  S  I  V  V  V  Y  L  H  R  L  *  Y  H  Q  N  P  V  Q  D  I  *  Q  I  H  I  Y  *  K  S  Q  D  Q  V  Y  V  S  F  V  H  E  H  L  L  E  A  *  T  F  E  D  F  Q  H  Y  L  R  K  N  I  Y  H   </second_frame>
            <third_frame>   I  L  I  V  V  *  S  R  K  F  F  F  *  L  S  Y  R  L  I  I  I  K  F  W  S  L  *  R  S  F  T  I  L  K  F  D  A  I  I  T  T  T  F  N  S  *  I  Y  R  K  F  K  L  T  I  *  L  *  K  S  L  I  S  L  L  S  I  Y  P  I  S  K  *  H  *  Y  L  *  V  V  F  C  *  R  I  F  V  V  S  N  L  K  S  C  C  T  E  S  C  L  R  S  Y  *  *  S  L  N  *  K  H  I  L  H  H  P  T  K  F  *  K  L  S  F  T  V  P  P  S  I  Q  *  L  W  Y  T  F  I  V  C  N  I  I  R  T  L  F  K  I  F  D  K  F  T  F  I  R  R  V  K  T  K  F  M  F  H  S  S  M  S  T  Y  L  R  H  R  R  L  R  I  F  N  I  I  *  G  R  I  F  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0062I24.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="97053" PGL_stop="83824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97053" e_stop="96937"/>
            <exon e_start="96861" e_stop="96783"/>
            <exon e_start="96620" e_stop="96541"/>
            <exon e_start="95594" e_stop="95475"/>
            <exon e_start="94767" e_stop="94698"/>
            <exon e_start="94632" e_stop="94559"/>
            <exon e_start="89255" e_stop="89135"/>
            <exon e_start="89012" e_stop="88950"/>
            <exon e_start="88395" e_stop="88336"/>
            <exon e_start="86354" e_stop="86229"/>
            <exon e_start="86152" e_stop="86069"/>
            <exon e_start="85644" e_stop="85466"/>
            <exon e_start="85346" e_stop="85341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.914" acc_prob="0.981" e_score="0.906"/>
          <exon-intron don_prob="0.991" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.548" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.825" e_score="0.989"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="97053" e_stop="96937" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.914" acc_prob="0.981">
            <gDNA_intron_boundary i_start="96936" i_stop="96862" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96861" e_stop="96783" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.923">
            <gDNA_intron_boundary i_start="96782" i_stop="96621" i_length="162"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96620" e_stop="96541" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96540" i_stop="95595" i_length="946"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95594" e_stop="95475" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.935">
            <gDNA_intron_boundary i_start="95474" i_stop="94768" i_length="707"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94767" e_stop="94698" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="94697" i_stop="94633" i_length="65"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94632" e_stop="94559" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.989">
            <gDNA_intron_boundary i_start="94558" i_stop="89256" i_length="5303"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89255" e_stop="89135" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.548" acc_prob="0.959">
            <gDNA_intron_boundary i_start="89134" i_stop="89013" i_length="122"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89012" e_stop="88950" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="0.973" acc_prob="0.995">
            <gDNA_intron_boundary i_start="88949" i_stop="88396" i_length="554"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="88395" e_stop="88336" e_length="60"/>
          </exon>
          <intron i_serial="9" don_prob="0.963" acc_prob="0.855">
            <gDNA_intron_boundary i_start="88335" i_stop="86355" i_length="1981"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="86354" e_stop="86229" e_length="126"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="86228" i_stop="86153" i_length="76"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="86152" e_stop="86069" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="86068" i_stop="85645" i_length="424"/>
          </intron>
          <exon e_serial="12" e_score="0.989">
            <gDNA_exon_boundary e_start="85644" e_stop="85466" e_length="179"/>
          </exon>
          <intron i_serial="12" don_prob="0.790" acc_prob="0.825">
            <gDNA_intron_boundary i_start="85465" i_stop="85347" i_length="119"/>
          </intron>
          <exon e_serial="13" e_score="0.667">
            <gDNA_exon_boundary e_start="85346" e_stop="85341" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97053" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96541"/>
              <exon start="95594" stop="95482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97053" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96541"/>
              <exon start="95594" stop="95503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97009" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96541"/>
              <exon start="95594" stop="95475"/>
              <exon start="94767" stop="94698"/>
              <exon start="94632" stop="94604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96996" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96541"/>
              <exon start="95594" stop="95475"/>
              <exon start="94767" stop="94698"/>
              <exon start="94632" stop="94559"/>
              <exon start="89255" stop="89135"/>
              <exon start="89012" stop="88950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96940" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96572" stop="96541"/>
              <exon start="95594" stop="95475"/>
              <exon start="94767" stop="94698"/>
              <exon start="94632" stop="94559"/>
              <exon start="89255" stop="89159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95530" stop="95475"/>
              <exon start="94767" stop="94698"/>
              <exon start="94632" stop="94559"/>
              <exon start="89255" stop="89135"/>
              <exon start="89012" stop="88950"/>
              <exon start="88395" stop="88336"/>
              <exon start="86354" stop="86229"/>
              <exon start="86152" stop="86069"/>
              <exon start="85644" stop="85466"/>
              <exon start="85346" stop="85341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89001" stop="88950"/>
              <exon start="88395" stop="88336"/>
              <exon start="86354" stop="86229"/>
              <exon start="86152" stop="86069"/>
              <exon start="85644" stop="85466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86298" stop="86229"/>
              <exon start="86152" stop="86069"/>
              <exon start="85644" stop="85466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620415" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTCCCGTTTCTTCTTCTTCTTCTTCAAGCGGGAAACAGTACAGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATA : TCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAAC : TGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGG : ACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAG : TGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAA : AATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAG : GATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAAGAAGGTCTTAATCTAGATTCAGAG : GCTCTTTCTACCCTCAGTTCAATTTCTCAAGGTGATTTGCGAAGGGCTATTACATACTTACAA : AGTGCTGCTCGGTTATTTGGATCTTCCATATCAGCAAAGGAACTGATTAGTGTGTCTGGG : GTCATCCCAAATGAAGTTGTTCAGGCTATATTCTCAGCTTGCAGAAGTGGCAATTTTGACTTGGCAAACAAAGAAGTGAACAATGTCATTGCAGAAGGATATCCTGTTTCTCAGATGCTGTCTCAG : TTGTATGATATATTAGTTGATGCAGACGACATTTCTGATGAACAAAAAGCAAGAATATGCAAGAAATTTGCTGAAGCAGACAAG : TGTCTTGTTGACGGAGCGGATGAGTATTTGCAACTTTTGAATGTTGCAAGCAGCACAATGCAAGCACTTAGCAACATGCCACAGGACATGACATTTTGAATTTGTATTCCTCTTATTAAAACTTGCTAAGTCACATTAATCGACAGCTTATTTGGTTTATTGGAAAGTCTTTTGATATG : CAAGAA</gDNA_template>
            <first_frame> N  F  P  F  L  L  L  L  L  Q  A  G  N  S  T  A  L  *  Q  K  K  E  N  S  Y  G  A  S  Y  A  E  L  S  A  M  G  R  E  I  :  S  T  E  A  S  E  G  C  S  S  P  G  *  S  R  S  S  P  H  Q  H  S  R  D  F  *   : L  P  A  Y  V  V  L  W  S  S  W  N  W  K  D  N  H  C  S  C  H  C  P  S  A  F  R  :  T  *  A  V  *  I  E  G  I  G  A  K  C  *  *  *  P  W  Y  Q  C  S  S  Y  K  N  *  E  L  C  C  C  C  C  R  F  *  S  A  K  :  W  L  S  L  P  T  F  *  D  H  N  P  *  *  S  R  F  N  D  S  R  C  S   : K  C  L  A  T  N  Y  G  D  I  F  K  S  Y  K  I  L  L  H  L  *  L  H  Q  Q  :  D  H  R  A  T  C  F  *  M  C  E  V  Q  I  Q  A  T  S  *  R  N  N  G  Q  P  N  I  A  Y  L  *  R  R  R  S  *  S  R  F  R   : G  S  F  Y  P  Q  F  N  F  S  R  *  F  A  K  G  Y  Y  I  L  T   : K  C  C  S  V  I  W  I  F  H  I  S  K  G  T  D  *  C  V  W   : G  H  P  K  *  S  C  S  G  Y  I  L  S  L  Q  K  W  Q  F  *  L  G  K  Q  R  S  E  Q  C  H  C  R  R  I  S  C  F  S  D  A  V  S   : V  V  *  Y  I  S  *  C  R  R  H  F  *  *  T  K  S  K  N  M  Q  E  I  C  *  S  R  Q   : V  S  C  *  R  S  G  *  V  F  A  T  F  E  C  C  K  Q  H  N  A  S  T  *  Q  H  A  T  G  H  D  I  L  N  L  Y  S  S  Y  *  N  L  L  S  H  I  N  R  Q  L  I  W  F  I  G  K  S  F  D  M  :  Q  E </first_frame>
            <second_frame>  I  S  R  F  F  F  F  F  F  K  R  E  T  V  Q  H  S  D  K  R  K  R  T  A  M  A  P  V  M  Q  S  S  Q  P  W  V  E  K  Y :   R  P  K  Q  V  K  D  V  A  H  Q  D  E  V  V  R  V  L  T  N  T  L  E  T  S  N  :  C  P  H  M  L  F  Y  G  P  P  G  T  G  K  T  T  T  A  L  A  I  A  H  Q  L  F  G :   P  E  L  Y  K  S  R  V  L  E  L  N  A  S  D  D  R  G  I  N  V  V  R  T  K  I  K  N  F  A  A  V  A  V  G  S  N  R  Q  S :   G  Y  P  C  P  P  F  K  I  I  I  L  D  E  A  D  S  M  T  Q  D  A  Q  :  N  A  L  R  R  T  M  E  T  Y  S  K  V  T  R  F  F  F  I  C  N  Y  I  S  R :   I  I  E  P  L  A  S  R  C  A  K  F  R  F  K  P  L  P  E  E  I  M  G  S  R  I  L  H  I  C  K  E  E  G  L  N  L  D  S  E  :  A  L  S  T  L  S  S  I  S  Q  G  D  L  R  R  A  I  T  Y  L  Q  :  S  A  A  R  L  F  G  S  S  I  S  A  K  E  L  I  S  V  S  G  :  V  I  P  N  E  V  V  Q  A  I  F  S  A  C  R  S  G  N  F  D  L  A  N  K  E  V  N  N  V  I  A  E  G  Y  P  V  S  Q  M  L  S  Q  :  L  Y  D  I  L  V  D  A  D  D  I  S  D  E  Q  K  A  R  I  C  K  K  F  A  E  A  D  K  :  C  L  V  D  G  A  D  E  Y  L  Q  L  L  N  V  A  S  S  T  M  Q  A  L  S  N  M  P  Q  D  M  T  F  *  I  C  I  P  L  I  K  T  C  *  V  T  L  I  D  S  L  F  G  L  L  E  S  L  L  I  C :   K   </second_frame>
            <third_frame>   F  P  V  S  S  S  S  S  S  S  G  K  Q  Y  S  T  L  T  K  E  R  E  Q  L  W  R  Q  L  C  R  A  L  S  H  G  S  R  N   : I  D  R  S  K  *  R  M  *  L  T  R  M  K  S  F  E  S  S  P  T  L  S  R  L  L  T :   A  R  I  C  C  F  M  V  L  L  E  L  E  R  Q  P  L  L  L  P  L  P  I  S  F  S   : D  L  S  C  I  N  R  G  Y  W  S  *  M  L  V  M  T  V  V  S  M  *  F  V  Q  K  L  R  T  L  L  L  L  L  *  V  L  I  G  K   : V  V  I  L  A  H  L  L  R  S  *  S  L  M  K  Q  I  Q  *  L  K  M  L  K :   M  P  C  D  E  L  W  R  H  I  Q  K  L  Q  D  S  S  S  F  V  I  T  S  A   : G  S  *  S  H  L  L  L  D  V  R  S  S  D  S  S  H  F  L  K  K  *  W  A  A  E  Y  C  I  F  V  K  K  K  V  L  I  *  I  Q  R :   L  F  L  P  S  V  Q  F  L  K  V  I  C  E  G  L  L  H  T  Y  K :   V  L  L  G  Y  L  D  L  P  Y  Q  Q  R  N  *  L  V  C  L  G :   S  S  Q  M  K  L  F  R  L  Y  S  Q  L  A  E  V  A  I  L  T  W  Q  T  K  K  *  T  M  S  L  Q  K  D  I  L  F  L  R  C  C  L  S :   C  M  I  Y  *  L  M  Q  T  T  F  L  M  N  K  K  Q  E  Y  A  R  N  L  L  K  Q  T  S :   V  L  L  T  E  R  M  S  I  C  N  F  *  M  L  Q  A  A  Q  C  K  H  L  A  T  C  H  R  T  *  H  F  E  F  V  F  L  L  L  K  L  A  K  S  H  *  S  T  A  Y  L  V  Y  W  K  V  F  *  Y   : A  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97052" stop="96937"/>
                    <exon start="96861" stop="96783"/>
                    <exon start="96620" stop="96541"/>
                    <exon start="95594" stop="95475"/>
                    <exon start="94767" stop="94698"/>
                    <exon start="94632" stop="94559"/>
                    <exon start="89255" stop="89135"/>
                    <exon start="89012" stop="88950"/>
                    <exon start="88395" stop="88336"/>
                    <exon start="86354" stop="86229"/>
                    <exon start="86152" stop="86069"/>
                    <exon start="85644" stop="85546"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1089</number_coding_nucleotides>
                  <number_encoded_amino_acids>363</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISRFFFFFFKRETVQHSDKRKRTAMAPVMQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSNRQSGYPCPPFKIIILDEADSMTQDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMGSRILHICKEEGLNLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSISAKELISVSGVIPNEVVQAIFSACRSGNFDLANKEVNNVIAEGYPVSQMLSQLYDILVDADDISDEQKARICKKFAEADKCLVDGADEYLQLLNVASSTMQALSNMPQDMTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97053" e_stop="96937"/>
            <exon e_start="96861" e_stop="96783"/>
            <exon e_start="96620" e_stop="96541"/>
            <exon e_start="95594" e_stop="95475"/>
            <exon e_start="94767" e_stop="94698"/>
            <exon e_start="94632" e_stop="94559"/>
            <exon e_start="89255" e_stop="89135"/>
            <exon e_start="89046" e_stop="88950"/>
            <exon e_start="88395" e_stop="88336"/>
            <exon e_start="86354" e_stop="86229"/>
            <exon e_start="86152" e_stop="86069"/>
            <exon e_start="85644" e_stop="85466"/>
            <exon e_start="83950" e_stop="83917"/>
            <exon e_start="83845" e_stop="83824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.914" acc_prob="0.981" e_score="0.906"/>
          <exon-intron don_prob="0.991" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.548" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.000" e_score="0.989"/>
          <exon-intron don_prob="0.000" acc_prob="0.909" e_score="0.735"/>
          <exon-only e_score="0.682"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="97053" e_stop="96937" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.914" acc_prob="0.981">
            <gDNA_intron_boundary i_start="96936" i_stop="96862" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96861" e_stop="96783" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.923">
            <gDNA_intron_boundary i_start="96782" i_stop="96621" i_length="162"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96620" e_stop="96541" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96540" i_stop="95595" i_length="946"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95594" e_stop="95475" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.935">
            <gDNA_intron_boundary i_start="95474" i_stop="94768" i_length="707"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94767" e_stop="94698" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="94697" i_stop="94633" i_length="65"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94632" e_stop="94559" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.989">
            <gDNA_intron_boundary i_start="94558" i_stop="89256" i_length="5303"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89255" e_stop="89135" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.548" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89134" i_stop="89047" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89046" e_stop="88950" e_length="97"/>
          </exon>
          <intron i_serial="8" don_prob="0.973" acc_prob="0.995">
            <gDNA_intron_boundary i_start="88949" i_stop="88396" i_length="554"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="88395" e_stop="88336" e_length="60"/>
          </exon>
          <intron i_serial="9" don_prob="0.963" acc_prob="0.855">
            <gDNA_intron_boundary i_start="88335" i_stop="86355" i_length="1981"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="86354" e_stop="86229" e_length="126"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="86228" i_stop="86153" i_length="76"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="86152" e_stop="86069" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="86068" i_stop="85645" i_length="424"/>
          </intron>
          <exon e_serial="12" e_score="0.989">
            <gDNA_exon_boundary e_start="85644" e_stop="85466" e_length="179"/>
          </exon>
          <intron i_serial="12" don_prob="0.790" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85465" i_stop="83951" i_length="1515"/>
          </intron>
          <exon e_serial="13" e_score="0.735">
            <gDNA_exon_boundary e_start="83950" e_stop="83917" e_length="34"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.909">
            <gDNA_intron_boundary i_start="83916" i_stop="83846" i_length="71"/>
          </intron>
          <exon e_serial="14" e_score="0.682">
            <gDNA_exon_boundary e_start="83845" e_stop="83824" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97053" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96541"/>
              <exon start="95594" stop="95482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97053" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96541"/>
              <exon start="95594" stop="95503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97009" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96541"/>
              <exon start="95594" stop="95475"/>
              <exon start="94767" stop="94698"/>
              <exon start="94632" stop="94604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96990" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96541"/>
              <exon start="95594" stop="95475"/>
              <exon start="94767" stop="94698"/>
              <exon start="94632" stop="94559"/>
              <exon start="89255" stop="89135"/>
              <exon start="89046" stop="88984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96940" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96572" stop="96541"/>
              <exon start="95594" stop="95475"/>
              <exon start="94767" stop="94698"/>
              <exon start="94632" stop="94559"/>
              <exon start="89255" stop="89159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89001" stop="88950"/>
              <exon start="88395" stop="88336"/>
              <exon start="86354" stop="86229"/>
              <exon start="86152" stop="86069"/>
              <exon start="85644" stop="85466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86298" stop="86229"/>
              <exon start="86152" stop="86069"/>
              <exon start="85644" stop="85466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86113" stop="86069"/>
              <exon start="85644" stop="85466"/>
              <exon start="83950" stop="83917"/>
              <exon start="83845" stop="83824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTCCCGTTTCTTCTTCTTCTTCTTCAAGCGGGAAACAGTACAGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATA : TCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAAC : TGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGG : ACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAG : TGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAA : AATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAG : GATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAAGAAGGTCTTAATCTAGATTCAGAG : AAGCTATATATAGGAGTGTGTCATCTGATTGCAGGCTCTTTCTACCCTCAGTTCAATTTCTCAAGGTGATTTGCGAAGGGCTATTACATACTTACAA : AGTGCTGCTCGGTTATTTGGATCTTCCATATCAGCAAAGGAACTGATTAGTGTGTCTGGG : GTCATCCCAAATGAAGTTGTTCAGGCTATATTCTCAGCTTGCAGAAGTGGCAATTTTGACTTGGCAAACAAAGAAGTGAACAATGTCATTGCAGAAGGATATCCTGTTTCTCAGATGCTGTCTCAG : TTGTATGATATATTAGTTGATGCAGACGACATTTCTGATGAACAAAAAGCAAGAATATGCAAGAAATTTGCTGAAGCAGACAAG : TGTCTTGTTGACGGAGCGGATGAGTATTTGCAACTTTTGAATGTTGCAAGCAGCACAATGCAAGCACTTAGCAACATGCCACAGGACATGACATTTTGAATTTGTATTCCTCTTATTAAAACTTGCTAAGTCACATTAATCGACAGCTTATTTGGTTTATTGGAAAGTCTTTTGATATG : TATTAAATAAAAAAATTTTAAAAAAAAACACAAA : GAAAACAAAAAGGAAATAGAAA</gDNA_template>
            <first_frame> N  F  P  F  L  L  L  L  L  Q  A  G  N  S  T  A  L  *  Q  K  K  E  N  S  Y  G  A  S  Y  A  E  L  S  A  M  G  R  E  I  :  S  T  E  A  S  E  G  C  S  S  P  G  *  S  R  S  S  P  H  Q  H  S  R  D  F  *   : L  P  A  Y  V  V  L  W  S  S  W  N  W  K  D  N  H  C  S  C  H  C  P  S  A  F  R  :  T  *  A  V  *  I  E  G  I  G  A  K  C  *  *  *  P  W  Y  Q  C  S  S  Y  K  N  *  E  L  C  C  C  C  C  R  F  *  S  A  K  :  W  L  S  L  P  T  F  *  D  H  N  P  *  *  S  R  F  N  D  S  R  C  S   : K  C  L  A  T  N  Y  G  D  I  F  K  S  Y  K  I  L  L  H  L  *  L  H  Q  Q  :  D  H  R  A  T  C  F  *  M  C  E  V  Q  I  Q  A  T  S  *  R  N  N  G  Q  P  N  I  A  Y  L  *  R  R  R  S  *  S  R  F  R   : E  A  I  Y  R  S  V  S  S  D  C  R  L  F  L  P  S  V  Q  F  L  K  V  I  C  E  G  L  L  H  T  Y  K :   V  L  L  G  Y  L  D  L  P  Y  Q  Q  R  N  *  L  V  C  L  G :   S  S  Q  M  K  L  F  R  L  Y  S  Q  L  A  E  V  A  I  L  T  W  Q  T  K  K  *  T  M  S  L  Q  K  D  I  L  F  L  R  C  C  L  S :   C  M  I  Y  *  L  M  Q  T  T  F  L  M  N  K  K  Q  E  Y  A  R  N  L  L  K  Q  T  S :   V  L  L  T  E  R  M  S  I  C  N  F  *  M  L  Q  A  A  Q  C  K  H  L  A  T  C  H  R  T  *  H  F  E  F  V  F  L  L  L  K  L  A  K  S  H  *  S  T  A  Y  L  V  Y  W  K  V  F  *  Y   : V  L  N  K  K  I  L  K  K  N  T  K :   K  T  K  R  K  *  K </first_frame>
            <second_frame>  I  S  R  F  F  F  F  F  F  K  R  E  T  V  Q  H  S  D  K  R  K  R  T  A  M  A  P  V  M  Q  S  S  Q  P  W  V  E  K  Y :   R  P  K  Q  V  K  D  V  A  H  Q  D  E  V  V  R  V  L  T  N  T  L  E  T  S  N  :  C  P  H  M  L  F  Y  G  P  P  G  T  G  K  T  T  T  A  L  A  I  A  H  Q  L  F  G :   P  E  L  Y  K  S  R  V  L  E  L  N  A  S  D  D  R  G  I  N  V  V  R  T  K  I  K  N  F  A  A  V  A  V  G  S  N  R  Q  S :   G  Y  P  C  P  P  F  K  I  I  I  L  D  E  A  D  S  M  T  Q  D  A  Q  :  N  A  L  R  R  T  M  E  T  Y  S  K  V  T  R  F  F  F  I  C  N  Y  I  S  R :   I  I  E  P  L  A  S  R  C  A  K  F  R  F  K  P  L  P  E  E  I  M  G  S  R  I  L  H  I  C  K  E  E  G  L  N  L  D  S  E  :  K  L  Y  I  G  V  C  H  L  I  A  G  S  F  Y  P  Q  F  N  F  S  R  *  F  A  K  G  Y  Y  I  L  T   : K  C  C  S  V  I  W  I  F  H  I  S  K  G  T  D  *  C  V  W   : G  H  P  K  *  S  C  S  G  Y  I  L  S  L  Q  K  W  Q  F  *  L  G  K  Q  R  S  E  Q  C  H  C  R  R  I  S  C  F  S  D  A  V  S   : V  V  *  Y  I  S  *  C  R  R  H  F  *  *  T  K  S  K  N  M  Q  E  I  C  *  S  R  Q   : V  S  C  *  R  S  G  *  V  F  A  T  F  E  C  C  K  Q  H  N  A  S  T  *  Q  H  A  T  G  H  D  I  L  N  L  Y  S  S  Y  *  N  L  L  S  H  I  N  R  Q  L  I  W  F  I  G  K  S  F  D  M  :  Y  *  I  K  K  F  *  K  K  T  Q   : R  K  Q  K  G  N  R   </second_frame>
            <third_frame>   F  P  V  S  S  S  S  S  S  S  G  K  Q  Y  S  T  L  T  K  E  R  E  Q  L  W  R  Q  L  C  R  A  L  S  H  G  S  R  N   : I  D  R  S  K  *  R  M  *  L  T  R  M  K  S  F  E  S  S  P  T  L  S  R  L  L  T :   A  R  I  C  C  F  M  V  L  L  E  L  E  R  Q  P  L  L  L  P  L  P  I  S  F  S   : D  L  S  C  I  N  R  G  Y  W  S  *  M  L  V  M  T  V  V  S  M  *  F  V  Q  K  L  R  T  L  L  L  L  L  *  V  L  I  G  K   : V  V  I  L  A  H  L  L  R  S  *  S  L  M  K  Q  I  Q  *  L  K  M  L  K :   M  P  C  D  E  L  W  R  H  I  Q  K  L  Q  D  S  S  S  F  V  I  T  S  A   : G  S  *  S  H  L  L  L  D  V  R  S  S  D  S  S  H  F  L  K  K  *  W  A  A  E  Y  C  I  F  V  K  K  K  V  L  I  *  I  Q  R :   S  Y  I  *  E  C  V  I  *  L  Q  A  L  S  T  L  S  S  I  S  Q  G  D  L  R  R  A  I  T  Y  L  Q  :  S  A  A  R  L  F  G  S  S  I  S  A  K  E  L  I  S  V  S  G  :  V  I  P  N  E  V  V  Q  A  I  F  S  A  C  R  S  G  N  F  D  L  A  N  K  E  V  N  N  V  I  A  E  G  Y  P  V  S  Q  M  L  S  Q  :  L  Y  D  I  L  V  D  A  D  D  I  S  D  E  Q  K  A  R  I  C  K  K  F  A  E  A  D  K  :  C  L  V  D  G  A  D  E  Y  L  Q  L  L  N  V  A  S  S  T  M  Q  A  L  S  N  M  P  Q  D  M  T  F  *  I  C  I  P  L  I  K  T  C  *  V  T  L  I  D  S  L  F  G  L  L  E  S  L  L  I  C :   I  K  *  K  N  F  K  K  K  H  K  :  E  N  K  K  E  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97052" stop="96937"/>
                    <exon start="96861" stop="96783"/>
                    <exon start="96620" stop="96541"/>
                    <exon start="95594" stop="95475"/>
                    <exon start="94767" stop="94698"/>
                    <exon start="94632" stop="94559"/>
                    <exon start="89255" stop="89135"/>
                    <exon start="89046" stop="88978"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISRFFFFFFKRETVQHSDKRKRTAMAPVMQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSNRQSGYPCPPFKIIILDEADSMTQDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMGSRILHICKEEGLNLDSEKLYIGVCHLIAGSFYPQFNFSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="128414" PGL_stop="127805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128414" e_stop="127805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="128414" e_stop="127805" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128414" stop="127805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128413" stop="127901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAGATGCAAATGATTCTCAAAATGAGCAGCAATCAACAATGAAAGGAAATGATGCGCCGGTGCTGGTTGTTAACAGCAAAATAGCCACTACAATTGTTCACAACCAAAATACGTCAAGTGAAGAAAATGCACTCTACACGGTTAAGAATGATAAAAAAGTTAATACACTCTCAATAGAACTCTTAGTAGCTGGCGAAAGAGGTAAACCTTCGAAGGATCTTGGCATTTTGGACGATAGGCCTTCAAAACGAATAAAAGTAAATGGTTCTGTGACACTATCAGAGGACAAGGGTGGGGACAGTGTACAGAAGTTCACTGTTTGCACAAATGACAAAGAGGTTATGGGAACAGGTGCCACTCCTTCTGAAGAAAGAAAGAAATCTGGAGATAGTAAGCTTTCTGGTGGACTGGACAAGAACATGCAGAACAGAAACGATGGTGCTGCCTTGGATATCAGGCCTCCAAAGAAGGCAATCATAGACTCTGTTAAAGTGAAAGAGGATAGAGATAGAGGTAACATGTCAATTGGTAAGCTTGTTGACAATATAGGCAAGTTGCCTAAATTATCTGCTGGAGTATCCCCCAAGGAAGTTGAGAGGATGGGTGGC</gDNA_template>
            <first_frame> W  R  C  K  *  F  S  K  *  A  A  I  N  N  E  R  K  *  C  A  G  A  G  C  *  Q  Q  N  S  H  Y  N  C  S  Q  P  K  Y  V  K  *  R  K  C  T  L  H  G  *  E  *  *  K  S  *  Y  T  L  N  R  T  L  S  S  W  R  K  R  *  T  F  E  G  S  W  H  F  G  R  *  A  F  K  T  N  K  S  K  W  F  C  D  T  I  R  G  Q  G  W  G  Q  C  T  E  V  H  C  L  H  K  *  Q  R  G  Y  G  N  R  C  H  S  F  *  R  K  K  E  I  W  R  *  *  A  F  W  W  T  G  Q  E  H  A  E  Q  K  R  W  C  C  L  G  Y  Q  A  S  K  E  G  N  H  R  L  C  *  S  E  R  G  *  R  *  R  *  H  V  N  W  *  A  C  *  Q  Y  R  Q  V  A  *  I  I  C  W  S  I  P  Q  G  S  *  E  D  G  W  </first_frame>
            <second_frame>  G  D  A  N  D  S  Q  N  E  Q  Q  S  T  M  K  G  N  D  A  P  V  L  V  V  N  S  K  I  A  T  T  I  V  H  N  Q  N  T  S  S  E  E  N  A  L  Y  T  V  K  N  D  K  K  V  N  T  L  S  I  E  L  L  V  A  G  E  R  G  K  P  S  K  D  L  G  I  L  D  D  R  P  S  K  R  I  K  V  N  G  S  V  T  L  S  E  D  K  G  G  D  S  V  Q  K  F  T  V  C  T  N  D  K  E  V  M  G  T  G  A  T  P  S  E  E  R  K  K  S  G  D  S  K  L  S  G  G  L  D  K  N  M  Q  N  R  N  D  G  A  A  L  D  I  R  P  P  K  K  A  I  I  D  S  V  K  V  K  E  D  R  D  R  G  N  M  S  I  G  K  L  V  D  N  I  G  K  L  P  K  L  S  A  G  V  S  P  K  E  V  E  R  M  G  G </second_frame>
            <third_frame>   E  M  Q  M  I  L  K  M  S  S  N  Q  Q  *  K  E  M  M  R  R  C  W  L  L  T  A  K  *  P  L  Q  L  F  T  T  K  I  R  Q  V  K  K  M  H  S  T  R  L  R  M  I  K  K  L  I  H  S  Q  *  N  S  *  *  L  A  K  E  V  N  L  R  R  I  L  A  F  W  T  I  G  L  Q  N  E  *  K  *  M  V  L  *  H  Y  Q  R  T  R  V  G  T  V  Y  R  S  S  L  F  A  Q  M  T  K  R  L  W  E  Q  V  P  L  L  L  K  K  E  R  N  L  E  I  V  S  F  L  V  D  W  T  R  T  C  R  T  E  T  M  V  L  P  W  I  S  G  L  Q  R  R  Q  S  *  T  L  L  K  *  K  R  I  E  I  E  V  T  C  Q  L  V  S  L  L  T  I  *  A  S  C  L  N  Y  L  L  E  Y  P  P  R  K  L  R  G  W  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128413" stop="127805"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDANDSQNEQQSTMKGNDAPVLVVNSKIATTIVHNQNTSSEENALYTVKNDKKVNTLSIELLVAGERGKPSKDLGILDDRPSKRIKVNGSVTLSEDKGGDSVQKFTVCTNDKEVMGTGATPSEERKKSGDSKLSGGLDKNMQNRNDGAALDIRPPKKAIIDSVKVKEDRDRGNMSIGKLVDNIGKLPKLSAGVSPKEVERMGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="128050" PGL_stop="128664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128050" e_stop="128664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="128050" e_stop="128664" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128050" stop="128664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAGTGGCACCTGTTCCCATAACCTCTTTGTCATTTGTGCAAACAGTGAACTTCTGTACACTGTCCCCACCCTTGTCCTCTGATAGTGTCACAGAACCATTTACTTTTATTCGTTTTGAAGGCCTATCGTCCAAAATGCCAAGATCCTTCGAAGGTTTACCTCTTTCGCCAGCTACTAAGAGTTCTATTGAGAGTGTATTAACTTTTTTATCATTCTTAACCGTGTAGAGTGCATTTTCTTCACTTGACGTATTTTGGTTGTGAACAATTGTAGTGGCTATTTTGCTGTTAACAACCAGCACCGGCGCATCATTTCCTTTCATTGTTGATTGCTGCTCATTTTGAGAATCATTTGCATCTCCATGTAAGGCATCCTCTCTAATCGGTGAACTTTGTGCATCTACATCATTTCTTCCCACTAAATGACTTGATTTACCAGCAACTTTTGCAACTCCCAAATCATGTGAGTTTTTCTCACCAGGGACATAATTCACTTCCTTAACAGTTTCCTGATTAACAGATGAAACATTTGTATCTCTCTGTACGTCCTGTCTAACAAGAGAACTTTGTCCATCTACATCACTTTTTCCAAGTAAATGACTCACTTTGGCAT</gDNA_template>
            <first_frame> K  E  W  H  L  F  P  *  P  L  C  H  L  C  K  Q  *  T  S  V  H  C  P  H  P  C  P  L  I  V  S  Q  N  H  L  L  L  F  V  L  K  A  Y  R  P  K  C  Q  D  P  S  K  V  Y  L  F  R  Q  L  L  R  V  L  L  R  V  Y  *  L  F  Y  H  S  *  P  C  R  V  H  F  L  H  L  T  Y  F  G  C  E  Q  L  *  W  L  F  C  C  *  Q  P  A  P  A  H  H  F  L  S  L  L  I  A  A  H  F  E  N  H  L  H  L  H  V  R  H  P  L  *  S  V  N  F  V  H  L  H  H  F  F  P  L  N  D  L  I  Y  Q  Q  L  L  Q  L  P  N  H  V  S  F  S  H  Q  G  H  N  S  L  P  *  Q  F  P  D  *  Q  M  K  H  L  Y  L  S  V  R  P  V  *  Q  E  N  F  V  H  L  H  H  F  F  Q  V  N  D  S  L  W  H </first_frame>
            <second_frame>  R  S  G  T  C  S  H  N  L  F  V  I  C  A  N  S  E  L  L  Y  T  V  P  T  L  V  L  *  *  C  H  R  T  I  Y  F  Y  S  F  *  R  P  I  V  Q  N  A  K  I  L  R  R  F  T  S  F  A  S  Y  *  E  F  Y  *  E  C  I  N  F  F  I  I  L  N  R  V  E  C  I  F  F  T  *  R  I  L  V  V  N  N  C  S  G  Y  F  A  V  N  N  Q  H  R  R  I  I  S  F  H  C  *  L  L  L  I  L  R  I  I  C  I  S  M  *  G  I  L  S  N  R  *  T  L  C  I  Y  I  I  S  S  H  *  M  T  *  F  T  S  N  F  C  N  S  Q  I  M  *  V  F  L  T  R  D  I  I  H  F  L  N  S  F  L  I  N  R  *  N  I  C  I  S  L  Y  V  L  S  N  K  R  T  L  S  I  Y  I  T  F  S  K  *  M  T  H  F  G   </second_frame>
            <third_frame>   G  V  A  P  V  P  I  T  S  L  S  F  V  Q  T  V  N  F  C  T  L  S  P  P  L  S  S  D  S  V  T  E  P  F  T  F  I  R  F  E  G  L  S  S  K  M  P  R  S  F  E  G  L  P  L  S  P  A  T  K  S  S  I  E  S  V  L  T  F  L  S  F  L  T  V  *  S  A  F  S  S  L  D  V  F  W  L  *  T  I  V  V  A  I  L  L  L  T  T  S  T  G  A  S  F  P  F  I  V  D  C  C  S  F  *  E  S  F  A  S  P  C  K  A  S  S  L  I  G  E  L  C  A  S  T  S  F  L  P  T  K  *  L  D  L  P  A  T  F  A  T  P  K  S  C  E  F  F  S  P  G  T  *  F  T  S  L  T  V  S  *  L  T  D  E  T  F  V  S  L  C  T  S  C  L  T  R  E  L  C  P  S  T  S  L  F  P  S  K  *  L  T  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128052" stop="128279"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVAPVPITSLSFVQTVNFCTLSPPLSSDSVTEPFTFIRFEGLSSKMPRSFEGLPLSPATKSSIESVLTFLSFLTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="134760" PGL_stop="128489"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134760" e_stop="134620"/>
            <exon e_start="129095" e_stop="128927"/>
            <exon e_start="128799" e_stop="128489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.970" e_score="0.965"/>
          <exon-intron don_prob="0.818" acc_prob="0.946" e_score="0.959"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="134760" e_stop="134620" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.970">
            <gDNA_intron_boundary i_start="134619" i_stop="129096" i_length="5524"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="129095" e_stop="128927" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.818" acc_prob="0.946">
            <gDNA_intron_boundary i_start="128926" i_stop="128800" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="0.875">
            <gDNA_exon_boundary e_start="128799" e_stop="128489" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134760" stop="134620"/>
              <exon start="129095" stop="128927"/>
              <exon start="128799" stop="128489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474018" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAAGTCTAGGAAGGTAAAGATCCAGTGGTTTTTTCGGTCGACAGAGATCTTGTATCACCTGAAAGATGTAAAGGTAGCTGAGAATGAAGTATTTCTTGCCTCTGGTGAAGGCACAGGATTGGCCAATGTTAATCCTTTG : GAAGCTATTGCTGGCAGATGTAATGTTATCTGCACTTCAGAGGACATCAGAAATCCGCAGCCATCAGATGAAGAAGTTAAATTGGCTGACTATGTTTTCTACCGTGCTTTTGATGTTGGAACTTGTGCAATTTTGGATAAGATGATCGACAAAGTTGGTGGGCTGGACG : TCAAGTATGTTTTTAACAGGAAAGATAGTGAAAAGGCCAGTCATGTCCTCAAATTTGCTTCTGACAAGAAAGATAACAAAACTGCCATGGAATATCGAGCTAATGGGGAGTCCTCTGGGCTAAAACCACAGAATCATGCCAAAGTGAGTCATTTACTTGGAAAAAGTGATGTAGATGGACAAAGTTCTCTTGTTAGACAGGACGTACAGAGAGATACAAATGTTTCATCTGTTAATCAGGAAACTGTTAAGGAAGTGAATTATGTCCCTGGTGAGAAAAACTCACATGATTTGGGAGTTGCAAAAGTTGCT</gDNA_template>
            <first_frame> D  K  S  R  K  V  K  I  Q  W  F  F  R  S  T  E  I  L  Y  H  L  K  D  V  K  V  A  E  N  E  V  F  L  A  S  G  E  G  T  G  L  A  N  V  N  P  L  :  E  A  I  A  G  R  C  N  V  I  C  T  S  E  D  I  R  N  P  Q  P  S  D  E  E  V  K  L  A  D  Y  V  F  Y  R  A  F  D  V  G  T  C  A  I  L  D  K  M  I  D  K  V  G  G  L  D   : V  K  Y  V  F  N  R  K  D  S  E  K  A  S  H  V  L  K  F  A  S  D  K  K  D  N  K  T  A  M  E  Y  R  A  N  G  E  S  S  G  L  K  P  Q  N  H  A  K  V  S  H  L  L  G  K  S  D  V  D  G  Q  S  S  L  V  R  Q  D  V  Q  R  D  T  N  V  S  S  V  N  Q  E  T  V  K  E  V  N  Y  V  P  G  E  K  N  S  H  D  L  G  V  A  K  V  A </first_frame>
            <second_frame>  T  S  L  G  R  *  R  S  S  G  F  F  G  R  Q  R  S  C  I  T  *  K  M  *  R  *  L  R  M  K  Y  F  L  P  L  V  K  A  Q  D  W  P  M  L  I  L  W :   K  L  L  L  A  D  V  M  L  S  A  L  Q  R  T  S  E  I  R  S  H  Q  M  K  K  L  N  W  L  T  M  F  S  T  V  L  L  M  L  E  L  V  Q  F  W  I  R  *  S  T  K  L  V  G  W  T  :  S  S  M  F  L  T  G  K  I  V  K  R  P  V  M  S  S  N  L  L  L  T  R  K  I  T  K  L  P  W  N  I  E  L  M  G  S  P  L  G  *  N  H  R  I  M  P  K  *  V  I  Y  L  E  K  V  M  *  M  D  K  V  L  L  L  D  R  T  Y  R  E  I  Q  M  F  H  L  L  I  R  K  L  L  R  K  *  I  M  S  L  V  R  K  T  H  M  I  W  E  L  Q  K  L   </second_frame>
            <third_frame>   Q  V  *  E  G  K  D  P  V  V  F  S  V  D  R  D  L  V  S  P  E  R  C  K  G  S  *  E  *  S  I  S  C  L  W  *  R  H  R  I  G  Q  C  *  S  F   : G  S  Y  C  W  Q  M  *  C  Y  L  H  F  R  G  H  Q  K  S  A  A  I  R  *  R  S  *  I  G  *  L  C  F  L  P  C  F  *  C  W  N  L  C  N  F  G  *  D  D  R  Q  S  W  W  A  G  R :   Q  V  C  F  *  Q  E  R  *  *  K  G  Q  S  C  P  Q  I  C  F  *  Q  E  R  *  Q  N  C  H  G  I  S  S  *  W  G  V  L  W  A  K  T  T  E  S  C  Q  S  E  S  F  T  W  K  K  *  C  R  W  T  K  F  S  C  *  T  G  R  T  E  R  Y  K  C  F  I  C  *  S  G  N  C  *  G  S  E  L  C  P  W  *  E  K  L  T  *  F  G  S  C  K  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134760" stop="134620"/>
                    <exon start="129095" stop="128927"/>
                    <exon start="128799" stop="128489"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKSRKVKIQWFFRSTEILYHLKDVKVAENEVFLASGEGTGLANVNPLEAIAGRCNVICTSEDIRNPQPSDEEVKLADYVFYRAFDVGTCAILDKMIDKVGGLDVKYVFNRKDSEKASHVLKFASDKKDNKTAMEYRANGESSGLKPQNHAKVSHLLGKSDVDGQSSLVRQDVQRDTNVSSVNQETVKEVNYVPGEKNSHDLGVAKVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="139827" PGL_stop="144170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139827" e_stop="139962"/>
            <exon e_start="140041" e_stop="140069"/>
            <exon e_start="140184" e_stop="140267"/>
            <exon e_start="140366" e_stop="140419"/>
            <exon e_start="140743" e_stop="140820"/>
            <exon e_start="140942" e_stop="140995"/>
            <exon e_start="142189" e_stop="142248"/>
            <exon e_start="142339" e_stop="142434"/>
            <exon e_start="143064" e_stop="143165"/>
            <exon e_start="143279" e_stop="143359"/>
            <exon e_start="143510" e_stop="144170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.993"/>
          <exon-intron don_prob="0.995" acc_prob="0.807" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.983" e_score="0.988"/>
          <exon-intron don_prob="0.517" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="139827" e_stop="139962" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="139963" i_stop="140040" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="140041" e_stop="140069" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.807">
            <gDNA_intron_boundary i_start="140070" i_stop="140183" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="140184" e_stop="140267" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.906" acc_prob="0.983">
            <gDNA_intron_boundary i_start="140268" i_stop="140365" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="140366" e_stop="140419" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.517" acc_prob="0.951">
            <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="140743" e_stop="140820" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.885" acc_prob="1.000">
            <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="140942" e_stop="140995" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.968">
            <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="142189" e_stop="142248" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.978" acc_prob="0.920">
            <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="142339" e_stop="142434" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.810">
            <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="143064" e_stop="143165" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="143279" e_stop="143359" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.895" acc_prob="0.933">
            <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150"/>
          </intron>
          <exon e_serial="11" e_score="0.939">
            <gDNA_exon_boundary e_start="143510" e_stop="144170" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139827" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139848" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139848" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220816" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139848" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221220" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139849" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139854" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139854" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139859" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139905" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140767" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140774" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140774" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140775" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142401" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143312" stop="143359"/>
              <exon start="143510" stop="144170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421745" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATCTTGACCTCGCGATATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG : TTGATGAATCACTCAAAACTACTTTTCAG : AATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG : TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG : AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG : GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG : GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG : CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG : CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG : GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG : ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAGCAGAGGTTTTCTCCTAATTAGACGCCTCACTCAAATTTTATATGTTATAGTTGCACGAGGGGTATTTTCAATATACCAAGTATGTATAGGGGAGATGCGGTTGACATGTATTATTGTTATGTTAGATGTACATAAGAGGCATATGTTGCCTGAGCTCTTACTAGTCATCGCATGTATTAATAATACAAATTATCCATCACTGATGCTGACCCTTTTATGTATTGACACTATGATATAAATAATGTCCAGCACA</gDNA_template>
            <first_frame> *  I  L  T  S  R  Y  I  L  F  T  F  L  H  S  L  C  P  L  S  S  L  F  L  *  *  P  C  V  *  F  Q  Q  E  S  I  A  Q  F  E  A  L  M  E  Q   : V  D  E  S  L  K  T  T  F  Q  :  N  V  H  Q  G  C  T  R  D  T  Y  R  R  F  L  I  A  R  E  G  N  V  A  N  A  H  K  M  :  L  V  D  S  L  N  W  R  V  K  N  E  I  D  D  I  L  S  :  K  P  I  I  P  T  E  L  Y  R  S  I  R  D  S  Q  L  I  G  M  P  G  Y  T  K  E  :  G  L  P  V  F  A  F  G  A  G  L  S  T  Y  D  K  A  S  :  V  H  Y  Y  V  Q  S  H  I  Q  F  N  E  Y  R  D  R  V  I  L  :  P  A  A  S  K  K  Y  G  K  R  I  S  K  S  L  K  V  L  D  M  T  G  L  K  L  S  A  L  N  Q  I  K  :  L  L  T  I  I  S  S  I  D  D  L  N  Y  P  E  K  V  V  A  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  V  V  K  P  L  L  Q  E  R  T  R  K  K  V  Q  V  L  S  G  C  G  Q  D  D  L  L  K  :  I  M  D  Y  S  S  L  P  H  F  C  R  R  E  G  S  G  S  S  K  Y  S  G  S  S  S  E  N  C  Y  S  L  D  H  P  F  H  Q  Q  L  Y  D  Y  I  K  Q  Q  A  L  L  R  R  P  V  R  P  V  K  Q  G  S  V  H  V  D  F  P  D  A  V  T  E  G  T  E  F  V  Q  T  L  A  S  E  F  Q  K  F  G  K  Q  N  G  L  S  Q  S  L  D  D  L  N  I  N  D  H  Q  A  *  I  I  R  V  W  V  I  M  H  S  L  T  I  L  D  S  H  A  S  T  V  L  I  A  R  A  V  *  Q  R  F  S  P  N  *  T  P  H  S  N  F  I  C  Y  S  C  T  R  G  I  F  N  I  P  S  M  Y  R  G  D  A  V  D  M  Y  Y  C  Y  V  R  C  T  *  E  A  Y  V  A  *  A  L  T  S  H  R  M  Y  *  *  Y  K  L  S  I  T  D  A  D  P  F  M  Y  *  H  Y  D  I  N  N  V  Q  H  </first_frame>
            <second_frame>  E  S  *  P  R  D  I  F  Y  L  L  F  F  I  R  S  V  L  S  L  L  C  F  C  S  S  H  V  C  D  F  S  K  N  P  S  L  S  L  K  L  *  W  N  K  :  L  M  N  H  S  K  L  L  F  R :   M  F  I  K  V  V  Q  G  I  H  I  G  G  S  *  *  Q  E  R  E  M  L  Q  M  L  I  K  C :   W  L  I  L  *  I  G  E  S  K  M  R  *  M  I  F  Y  R :   N  L  S  F  L  L  S  F  T  D  Q  F  V  I  L  N  *  *  E  C  Q  V  T  R  K  R :   A  F  Q  Y  S  L  L  V  Q  D  S  A  H  M  I  K  H  R :   S  I  I  M  C  N  H  T  F  S  S  M  N  I  A  I  V  *  F  C :   L  L  Q  V  R  S  M  G  N  V  S  A  N  L  *  R  F  *  I  *  P  A  *  N  F  Q  L  *  T  K  *  S :   Y  *  L  *  F  P  Q  L  M  T  L  I  T  R  R  R  *  L  H  T  T  L  S  M  L  P  I  S  F  Q  P  V  G  R :   *  S  N  L  F  Y  R  R  E  P  E  K  R  F  K  F  Y  Q  V  V  D  R  M  I  Y  *  R :   S  W  T  I  R  H  C  P  I  F  A  G  E  K  V  L  D  L  P  N  T  Q  A  A  Q  V  K  I  V  I  P  W  I  I  H  S  T  S  N  F  M  I  T  *  S  S  R  H  C  F  A  D  L  F  G  Q  L  N  R  A  L  S  M  W  I  F  L  M  L  S  L  R  G  L  S  L  F  R  R  W  H  Q  N  F  K  S  S  V  S  K  M  D  F  L  N  H  *  M  I  L  I  S  M  I  I  K  H  R  *  *  E  F  G  S  L  C  T  R  *  Q  F  W  I  L  M  Q  V  Q  Y  *  *  L  E  Q  Y  S  R  G  F  L  L  I  R  R  L  T  Q  I  L  Y  V  I  V  A  R  G  V  F  S  I  Y  Q  V  C  I  G  E  M  R  L  T  C  I  I  V  M  L  D  V  H  K  R  H  M  L  P  E  L  L  L  V  I  A  C  I  N  N  T  N  Y  P  S  L  M  L  T  L  L  C  I  D  T  M  I  *  I  M  S  S  T </second_frame>
            <third_frame>   N  L  D  L  A  I  Y  F  I  Y  F  S  S  F  A  L  S  S  L  F  S  V  S  V  V  A  M  C  V  I  S  A  R  I  H  R  S  V  *  S  F  N  G  T  S :   *  *  I  T  Q  N  Y  F  S   : E  C  S  S  R  L  Y  K  G  Y  I  S  A  V  P  N  S  K  R  G  K  C  C  K  C  S  *  N   : V  G  *  F  F  E  L  E  S  Q  K  *  D  R  *  Y  F  I   : E  T  Y  H  S  Y  *  A  L  Q  I  N  S  *  F  S  T  N  R  N  A  R  L  H  E  R   : G  P  S  S  I  R  F  W  C  R  T  Q  H  I  *  *  S  I   : G  P  L  L  C  A  I  T  H  S  V  Q  *  I  S  R  S  C  N  S   : A  C  C  K  *  E  V  W  E  T  Y  Q  Q  I  S  E  G  F  R  Y  D  R  L  E  T  F  S  S  K  P  N  K   : A  I  D  Y  N  F  L  N  *  *  P  *  L  P  G  E  G  S  C  I  L  H  C  Q  C  S  L  Y  L  F  S  L  L  E   : G  S  Q  T  S  S  T  G  E  N  P  K  K  G  S  S  F  I  R  L  W  T  G  *  S  I  E   : D  H  G  L  F  V  T  A  P  F  L  P  E  R  R  F  W  I  F  Q  I  L  R  Q  L  K  *  K  L  L  F  P  G  S  S  I  P  P  A  T  L  *  L  H  K  A  A  G  I  A  S  Q  T  C  S  A  S  *  T  G  L  C  P  C  G  F  S  *  C  C  H  *  G  D  *  V  C  S  D  V  G  I  R  I  S  K  V  R  *  A  K  W  T  F  S  I  T  R  *  S  *  Y  Q  *  S  S  S  I  D  N  K  S  L  G  H  Y  A  L  A  D  N  S  G  F  S  C  K  Y  S  I  N  S  S  S  S  I  A  E  V  F  S  *  L  D  A  S  L  K  F  Y  M  L  *  L  H  E  G  Y  F  Q  Y  T  K  Y  V  *  G  R  C  G  *  H  V  L  L  L  C  *  M  Y  I  R  G  I  C  C  L  S  S  Y  *  S  S  H  V  L  I  I  Q  I  I  H  H  *  C  *  P  F  Y  V  L  T  L  *  Y  K  *  C  P  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139917" stop="139962"/>
                    <exon start="140041" stop="140069"/>
                    <exon start="140184" stop="140267"/>
                    <exon start="140366" stop="140419"/>
                    <exon start="140743" stop="140820"/>
                    <exon start="140942" stop="140995"/>
                    <exon start="142189" stop="142248"/>
                    <exon start="142339" stop="142434"/>
                    <exon start="143064" stop="143165"/>
                    <exon start="143279" stop="143359"/>
                    <exon start="143510" stop="143833"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQQESIAQFEALMEQVDESLKTTFQNVHQGCTRDTYRRFLIAREGNVANAHKMLVDSLNWRVKNEIDDILSKPIIPTELYRSIRDSQLIGMPGYTKEGLPVFAFGAGLSTYDKASVHYYVQSHIQFNEYRDRVILPAASKKYGKRISKSLKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKVVAYYIVNAPYIFSACWKVVKPLLQERTRKKVQVLSGCGQDDLLKIMDYSSLPHFCRREGSGSSKYSGSSSENCYSLDHPFHQQLYDYIKQQALLRRPVRPVKQGSVHVDFPDAVTEGTEFVQTLASEFQKFGKQNGLSQSLDDLNINDHQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143904" stop="144155"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEQYSRGFLLIRRLTQILYVIVARGVFSIYQVCIGEMRLTCIIVMLDVHKRHMLPELLLVIACINNTNYPSLMLTLLCIDTMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="139827" e_stop="139962"/>
            <exon e_start="140041" e_stop="140069"/>
            <exon e_start="140184" e_stop="140267"/>
            <exon e_start="140366" e_stop="140419"/>
            <exon e_start="140743" e_stop="140820"/>
            <exon e_start="140942" e_stop="140995"/>
            <exon e_start="142189" e_stop="142248"/>
            <exon e_start="142339" e_stop="142434"/>
            <exon e_start="143064" e_stop="143165"/>
            <exon e_start="143300" e_stop="143359"/>
            <exon e_start="143510" e_stop="144170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.993"/>
          <exon-intron don_prob="0.995" acc_prob="0.807" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.983" e_score="0.988"/>
          <exon-intron don_prob="0.517" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.887" e_score="0.941"/>
          <exon-intron don_prob="0.895" acc_prob="0.933" e_score="0.952"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="139827" e_stop="139962" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="139963" i_stop="140040" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="140041" e_stop="140069" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.807">
            <gDNA_intron_boundary i_start="140070" i_stop="140183" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="140184" e_stop="140267" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.906" acc_prob="0.983">
            <gDNA_intron_boundary i_start="140268" i_stop="140365" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="140366" e_stop="140419" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.517" acc_prob="0.951">
            <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="140743" e_stop="140820" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.885" acc_prob="1.000">
            <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="140942" e_stop="140995" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.968">
            <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="142189" e_stop="142248" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.978" acc_prob="0.920">
            <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="142339" e_stop="142434" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.810">
            <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629"/>
          </intron>
          <exon e_serial="9" e_score="0.941">
            <gDNA_exon_boundary e_start="143064" e_stop="143165" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.887">
            <gDNA_intron_boundary i_start="143166" i_stop="143299" i_length="134"/>
          </intron>
          <exon e_serial="10" e_score="0.952">
            <gDNA_exon_boundary e_start="143300" e_stop="143359" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.895" acc_prob="0.933">
            <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150"/>
          </intron>
          <exon e_serial="11" e_score="0.939">
            <gDNA_exon_boundary e_start="143510" e_stop="144170" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139827" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139848" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220816" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139848" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221220" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139849" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139854" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139854" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139859" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139902" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143300" stop="143320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139905" stop="139962"/>
              <exon start="140041" stop="140069"/>
              <exon start="140184" stop="140267"/>
              <exon start="140366" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140774" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143312" stop="143359"/>
              <exon start="143510" stop="144170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421745" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATCTTGACCTCGCGATATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG : TTGATGAATCACTCAAAACTACTTTTCAG : AATGTTCATCAAGGTTGTACAAGGGATACATATCGGCGGTTCCTAATAGCAAGAGAGGGAAATGTTGCAAATGCTCATAAAATG : TTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG : AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG : GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG : GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG : CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG : CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG : GAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG : ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAGCAGAGGTTTTCTCCTAATTAGACGCCTCACTCAAATTTTATATGTTATAGTTGCACGAGGGGTATTTTCAATATACCAAGTATGTATAGGGGAGATGCGGTTGACATGTATTATTGTTATGTTAGATGTACATAAGAGGCATATGTTGCCTGAGCTCTTACTAGTCATCGCATGTATTAATAATACAAATTATCCATCACTGATGCTGACCCTTTTATGTATTGACACTATGATATAAATAATGTCCAGCACA</gDNA_template>
            <first_frame> *  I  L  T  S  R  Y  I  L  F  T  F  L  H  S  L  C  P  L  S  S  L  F  L  *  *  P  C  V  *  F  Q  Q  E  S  I  A  Q  F  E  A  L  M  E  Q   : V  D  E  S  L  K  T  T  F  Q  :  N  V  H  Q  G  C  T  R  D  T  Y  R  R  F  L  I  A  R  E  G  N  V  A  N  A  H  K  M  :  L  V  D  S  L  N  W  R  V  K  N  E  I  D  D  I  L  S  :  K  P  I  I  P  T  E  L  Y  R  S  I  R  D  S  Q  L  I  G  M  P  G  Y  T  K  E  :  G  L  P  V  F  A  F  G  A  G  L  S  T  Y  D  K  A  S  :  V  H  Y  Y  V  Q  S  H  I  Q  F  N  E  Y  R  D  R  V  I  L  :  P  A  A  S  K  K  Y  G  K  R  I  S  K  S  L  K  V  L  D  M  T  G  L  K  L  S  A  L  N  Q  I  K  :  L  L  T  I  I  S  S  I  D  D  L  N  Y  P  E  K  V  V  A  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  E  R  T  R  K  K  V  Q  V  L  S  G  C  G  Q  D  D  L  L  K  :  I  M  D  Y  S  S  L  P  H  F  C  R  R  E  G  S  G  S  S  K  Y  S  G  S  S  S  E  N  C  Y  S  L  D  H  P  F  H  Q  Q  L  Y  D  Y  I  K  Q  Q  A  L  L  R  R  P  V  R  P  V  K  Q  G  S  V  H  V  D  F  P  D  A  V  T  E  G  T  E  F  V  Q  T  L  A  S  E  F  Q  K  F  G  K  Q  N  G  L  S  Q  S  L  D  D  L  N  I  N  D  H  Q  A  *  I  I  R  V  W  V  I  M  H  S  L  T  I  L  D  S  H  A  S  T  V  L  I  A  R  A  V  *  Q  R  F  S  P  N  *  T  P  H  S  N  F  I  C  Y  S  C  T  R  G  I  F  N  I  P  S  M  Y  R  G  D  A  V  D  M  Y  Y  C  Y  V  R  C  T  *  E  A  Y  V  A  *  A  L  T  S  H  R  M  Y  *  *  Y  K  L  S  I  T  D  A  D  P  F  M  Y  *  H  Y  D  I  N  N  V  Q  H  </first_frame>
            <second_frame>  E  S  *  P  R  D  I  F  Y  L  L  F  F  I  R  S  V  L  S  L  L  C  F  C  S  S  H  V  C  D  F  S  K  N  P  S  L  S  L  K  L  *  W  N  K  :  L  M  N  H  S  K  L  L  F  R :   M  F  I  K  V  V  Q  G  I  H  I  G  G  S  *  *  Q  E  R  E  M  L  Q  M  L  I  K  C :   W  L  I  L  *  I  G  E  S  K  M  R  *  M  I  F  Y  R :   N  L  S  F  L  L  S  F  T  D  Q  F  V  I  L  N  *  *  E  C  Q  V  T  R  K  R :   A  F  Q  Y  S  L  L  V  Q  D  S  A  H  M  I  K  H  R :   S  I  I  M  C  N  H  T  F  S  S  M  N  I  A  I  V  *  F  C :   L  L  Q  V  R  S  M  G  N  V  S  A  N  L  *  R  F  *  I  *  P  A  *  N  F  Q  L  *  T  K  *  S :   Y  *  L  *  F  P  Q  L  M  T  L  I  T  R  R  R  *  L  H  T  T  L  S  M  L  P  I  S  F  Q  P  V  G  R :   R  E  P  E  K  R  F  K  F  Y  Q  V  V  D  R  M  I  Y  *  R :   S  W  T  I  R  H  C  P  I  F  A  G  E  K  V  L  D  L  P  N  T  Q  A  A  Q  V  K  I  V  I  P  W  I  I  H  S  T  S  N  F  M  I  T  *  S  S  R  H  C  F  A  D  L  F  G  Q  L  N  R  A  L  S  M  W  I  F  L  M  L  S  L  R  G  L  S  L  F  R  R  W  H  Q  N  F  K  S  S  V  S  K  M  D  F  L  N  H  *  M  I  L  I  S  M  I  I  K  H  R  *  *  E  F  G  S  L  C  T  R  *  Q  F  W  I  L  M  Q  V  Q  Y  *  *  L  E  Q  Y  S  R  G  F  L  L  I  R  R  L  T  Q  I  L  Y  V  I  V  A  R  G  V  F  S  I  Y  Q  V  C  I  G  E  M  R  L  T  C  I  I  V  M  L  D  V  H  K  R  H  M  L  P  E  L  L  L  V  I  A  C  I  N  N  T  N  Y  P  S  L  M  L  T  L  L  C  I  D  T  M  I  *  I  M  S  S  T </second_frame>
            <third_frame>   N  L  D  L  A  I  Y  F  I  Y  F  S  S  F  A  L  S  S  L  F  S  V  S  V  V  A  M  C  V  I  S  A  R  I  H  R  S  V  *  S  F  N  G  T  S :   *  *  I  T  Q  N  Y  F  S   : E  C  S  S  R  L  Y  K  G  Y  I  S  A  V  P  N  S  K  R  G  K  C  C  K  C  S  *  N   : V  G  *  F  F  E  L  E  S  Q  K  *  D  R  *  Y  F  I   : E  T  Y  H  S  Y  *  A  L  Q  I  N  S  *  F  S  T  N  R  N  A  R  L  H  E  R   : G  P  S  S  I  R  F  W  C  R  T  Q  H  I  *  *  S  I   : G  P  L  L  C  A  I  T  H  S  V  Q  *  I  S  R  S  C  N  S   : A  C  C  K  *  E  V  W  E  T  Y  Q  Q  I  S  E  G  F  R  Y  D  R  L  E  T  F  S  S  K  P  N  K   : A  I  D  Y  N  F  L  N  *  *  P  *  L  P  G  E  G  S  C  I  L  H  C  Q  C  S  L  Y  L  F  S  L  L  E   : G  E  N  P  K  K  G  S  S  F  I  R  L  W  T  G  *  S  I  E   : D  H  G  L  F  V  T  A  P  F  L  P  E  R  R  F  W  I  F  Q  I  L  R  Q  L  K  *  K  L  L  F  P  G  S  S  I  P  P  A  T  L  *  L  H  K  A  A  G  I  A  S  Q  T  C  S  A  S  *  T  G  L  C  P  C  G  F  S  *  C  C  H  *  G  D  *  V  C  S  D  V  G  I  R  I  S  K  V  R  *  A  K  W  T  F  S  I  T  R  *  S  *  Y  Q  *  S  S  S  I  D  N  K  S  L  G  H  Y  A  L  A  D  N  S  G  F  S  C  K  Y  S  I  N  S  S  S  S  I  A  E  V  F  S  *  L  D  A  S  L  K  F  Y  M  L  *  L  H  E  G  Y  F  Q  Y  T  K  Y  V  *  G  R  C  G  *  H  V  L  L  L  C  *  M  Y  I  R  G  I  C  C  L  S  S  Y  *  S  S  H  V  L  I  I  Q  I  I  H  H  *  C  *  P  F  Y  V  L  T  L  *  Y  K  *  C  P  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139917" stop="139962"/>
                    <exon start="140041" stop="140069"/>
                    <exon start="140184" stop="140267"/>
                    <exon start="140366" stop="140419"/>
                    <exon start="140743" stop="140820"/>
                    <exon start="140942" stop="140995"/>
                    <exon start="142189" stop="142248"/>
                    <exon start="142339" stop="142434"/>
                    <exon start="143064" stop="143165"/>
                    <exon start="143300" stop="143359"/>
                    <exon start="143510" stop="143833"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQQESIAQFEALMEQVDESLKTTFQNVHQGCTRDTYRRFLIAREGNVANAHKMLVDSLNWRVKNEIDDILSKPIIPTELYRSIRDSQLIGMPGYTKEGLPVFAFGAGLSTYDKASVHYYVQSHIQFNEYRDRVILPAASKKYGKRISKSLKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKVVAYYIVNAPYIFSACWKERTRKKVQVLSGCGQDDLLKIMDYSSLPHFCRREGSGSSKYSGSSSENCYSLDHPFHQQLYDYIKQQALLRRPVRPVKQGSVHVDFPDAVTEGTEFVQTLASEFQKFGKQNGLSQSLDDLNINDHQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143904" stop="144155"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEQYSRGFLLIRRLTQILYVIVARGVFSIYQVCIGEMRLTCIIVMLDVHKRHMLPELLLVIACINNTNYPSLMLTLLCIDTMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="140359" e_stop="140419"/>
            <exon e_start="140743" e_stop="140820"/>
            <exon e_start="140942" e_stop="140995"/>
            <exon e_start="142189" e_stop="142248"/>
            <exon e_start="142339" e_stop="142434"/>
            <exon e_start="143064" e_stop="143165"/>
            <exon e_start="143279" e_stop="143359"/>
            <exon e_start="143510" e_stop="144170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.517" acc_prob="0.951" e_score="0.918"/>
          <exon-intron don_prob="0.885" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="140359" e_stop="140419" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.517" acc_prob="0.951">
            <gDNA_intron_boundary i_start="140420" i_stop="140742" i_length="323"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="140743" e_stop="140820" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.885" acc_prob="1.000">
            <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="140942" e_stop="140995" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.968">
            <gDNA_intron_boundary i_start="140996" i_stop="142188" i_length="1193"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="142189" e_stop="142248" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.920">
            <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="142339" e_stop="142434" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.810">
            <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="143064" e_stop="143165" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="143279" e_stop="143359" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.895" acc_prob="0.933">
            <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150"/>
          </intron>
          <exon e_serial="8" e_score="0.939">
            <gDNA_exon_boundary e_start="143510" e_stop="144170" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140359" stop="140419"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140767" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140774" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140774" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140775" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142401" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143312" stop="143359"/>
              <exon start="143510" stop="144170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421745" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTACAGTTGGTTGATTCTTTGAATTGGAGAGTCAAAAATGAGATAGATGATATTTTATCG : AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG : GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG : GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG : CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG : CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG : GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG : ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAGCAGAGGTTTTCTCCTAATTAGACGCCTCACTCAAATTTTATATGTTATAGTTGCACGAGGGGTATTTTCAATATACCAAGTATGTATAGGGGAGATGCGGTTGACATGTATTATTGTTATGTTAGATGTACATAAGAGGCATATGTTGCCTGAGCTCTTACTAGTCATCGCATGTATTAATAATACAAATTATCCATCACTGATGCTGACCCTTTTATGTATTGACACTATGATATAAATAATGTCCAGCACA</gDNA_template>
            <first_frame> V  T  V  G  *  F  F  E  L  E  S  Q  K  *  D  R  *  Y  F  I   : E  T  Y  H  S  Y  *  A  L  Q  I  N  S  *  F  S  T  N  R  N  A  R  L  H  E  R   : G  P  S  S  I  R  F  W  C  R  T  Q  H  I  *  *  S  I   : G  P  L  L  C  A  I  T  H  S  V  Q  *  I  S  R  S  C  N  S   : A  C  C  K  *  E  V  W  E  T  Y  Q  Q  I  S  E  G  F  R  Y  D  R  L  E  T  F  S  S  K  P  N  K   : A  I  D  Y  N  F  L  N  *  *  P  *  L  P  G  E  G  S  C  I  L  H  C  Q  C  S  L  Y  L  F  S  L  L  E   : G  S  Q  T  S  S  T  G  E  N  P  K  K  G  S  S  F  I  R  L  W  T  G  *  S  I  E   : D  H  G  L  F  V  T  A  P  F  L  P  E  R  R  F  W  I  F  Q  I  L  R  Q  L  K  *  K  L  L  F  P  G  S  S  I  P  P  A  T  L  *  L  H  K  A  A  G  I  A  S  Q  T  C  S  A  S  *  T  G  L  C  P  C  G  F  S  *  C  C  H  *  G  D  *  V  C  S  D  V  G  I  R  I  S  K  V  R  *  A  K  W  T  F  S  I  T  R  *  S  *  Y  Q  *  S  S  S  I  D  N  K  S  L  G  H  Y  A  L  A  D  N  S  G  F  S  C  K  Y  S  I  N  S  S  S  S  I  A  E  V  F  S  *  L  D  A  S  L  K  F  Y  M  L  *  L  H  E  G  Y  F  Q  Y  T  K  Y  V  *  G  R  C  G  *  H  V  L  L  L  C  *  M  Y  I  R  G  I  C  C  L  S  S  Y  *  S  S  H  V  L  I  I  Q  I  I  H  H  *  C  *  P  F  Y  V  L  T  L  *  Y  K  *  C  P  A   </first_frame>
            <second_frame>  L  Q  L  V  D  S  L  N  W  R  V  K  N  E  I  D  D  I  L  S  :  K  P  I  I  P  T  E  L  Y  R  S  I  R  D  S  Q  L  I  G  M  P  G  Y  T  K  E  :  G  L  P  V  F  A  F  G  A  G  L  S  T  Y  D  K  A  S  :  V  H  Y  Y  V  Q  S  H  I  Q  F  N  E  Y  R  D  R  V  I  L  :  P  A  A  S  K  K  Y  G  K  R  I  S  K  S  L  K  V  L  D  M  T  G  L  K  L  S  A  L  N  Q  I  K  :  L  L  T  I  I  S  S  I  D  D  L  N  Y  P  E  K  V  V  A  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  V  V  K  P  L  L  Q  E  R  T  R  K  K  V  Q  V  L  S  G  C  G  Q  D  D  L  L  K  :  I  M  D  Y  S  S  L  P  H  F  C  R  R  E  G  S  G  S  S  K  Y  S  G  S  S  S  E  N  C  Y  S  L  D  H  P  F  H  Q  Q  L  Y  D  Y  I  K  Q  Q  A  L  L  R  R  P  V  R  P  V  K  Q  G  S  V  H  V  D  F  P  D  A  V  T  E  G  T  E  F  V  Q  T  L  A  S  E  F  Q  K  F  G  K  Q  N  G  L  S  Q  S  L  D  D  L  N  I  N  D  H  Q  A  *  I  I  R  V  W  V  I  M  H  S  L  T  I  L  D  S  H  A  S  T  V  L  I  A  R  A  V  *  Q  R  F  S  P  N  *  T  P  H  S  N  F  I  C  Y  S  C  T  R  G  I  F  N  I  P  S  M  Y  R  G  D  A  V  D  M  Y  Y  C  Y  V  R  C  T  *  E  A  Y  V  A  *  A  L  T  S  H  R  M  Y  *  *  Y  K  L  S  I  T  D  A  D  P  F  M  Y  *  H  Y  D  I  N  N  V  Q  H  </second_frame>
            <third_frame>   Y  S  W  L  I  L  *  I  G  E  S  K  M  R  *  M  I  F  Y  R :   N  L  S  F  L  L  S  F  T  D  Q  F  V  I  L  N  *  *  E  C  Q  V  T  R  K  R :   A  F  Q  Y  S  L  L  V  Q  D  S  A  H  M  I  K  H  R :   S  I  I  M  C  N  H  T  F  S  S  M  N  I  A  I  V  *  F  C :   L  L  Q  V  R  S  M  G  N  V  S  A  N  L  *  R  F  *  I  *  P  A  *  N  F  Q  L  *  T  K  *  S :   Y  *  L  *  F  P  Q  L  M  T  L  I  T  R  R  R  *  L  H  T  T  L  S  M  L  P  I  S  F  Q  P  V  G  R :   *  S  N  L  F  Y  R  R  E  P  E  K  R  F  K  F  Y  Q  V  V  D  R  M  I  Y  *  R :   S  W  T  I  R  H  C  P  I  F  A  G  E  K  V  L  D  L  P  N  T  Q  A  A  Q  V  K  I  V  I  P  W  I  I  H  S  T  S  N  F  M  I  T  *  S  S  R  H  C  F  A  D  L  F  G  Q  L  N  R  A  L  S  M  W  I  F  L  M  L  S  L  R  G  L  S  L  F  R  R  W  H  Q  N  F  K  S  S  V  S  K  M  D  F  L  N  H  *  M  I  L  I  S  M  I  I  K  H  R  *  *  E  F  G  S  L  C  T  R  *  Q  F  W  I  L  M  Q  V  Q  Y  *  *  L  E  Q  Y  S  R  G  F  L  L  I  R  R  L  T  Q  I  L  Y  V  I  V  A  R  G  V  F  S  I  Y  Q  V  C  I  G  E  M  R  L  T  C  I  I  V  M  L  D  V  H  K  R  H  M  L  P  E  L  L  L  V  I  A  C  I  N  N  T  N  Y  P  S  L  M  L  T  L  L  C  I  D  T  M  I  *  I  M  S  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140360" stop="140419"/>
                    <exon start="140743" stop="140820"/>
                    <exon start="140942" stop="140995"/>
                    <exon start="142189" stop="142248"/>
                    <exon start="142339" stop="142434"/>
                    <exon start="143064" stop="143165"/>
                    <exon start="143279" stop="143359"/>
                    <exon start="143510" stop="143833"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQLVDSLNWRVKNEIDDILSKPIIPTELYRSIRDSQLIGMPGYTKEGLPVFAFGAGLSTYDKASVHYYVQSHIQFNEYRDRVILPAASKKYGKRISKSLKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKVVAYYIVNAPYIFSACWKVVKPLLQERTRKKVQVLSGCGQDDLLKIMDYSSLPHFCRREGSGSSKYSGSSSENCYSLDHPFHQQLYDYIKQQALLRRPVRPVKQGSVHVDFPDAVTEGTEFVQTLASEFQKFGKQNGLSQSLDDLNINDHQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143904" stop="144155"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEQYSRGFLLIRRLTQILYVIVARGVFSIYQVCIGEMRLTCIIVMLDVHKRHMLPELLLVIACINNTNYPSLMLTLLCIDTMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="142065" e_stop="142066"/>
            <exon e_start="142189" e_stop="142248"/>
            <exon e_start="142339" e_stop="142434"/>
            <exon e_start="143064" e_stop="143165"/>
            <exon e_start="143279" e_stop="143359"/>
            <exon e_start="143510" e_stop="144170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.968" e_score="0.500"/>
          <exon-intron don_prob="0.978" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="142065" e_stop="142066" e_length="2"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.968">
            <gDNA_intron_boundary i_start="142067" i_stop="142188" i_length="122"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="142189" e_stop="142248" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.920">
            <gDNA_intron_boundary i_start="142249" i_stop="142338" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="142339" e_stop="142434" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.810">
            <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="143064" e_stop="143165" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="143279" e_stop="143359" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.895" acc_prob="0.933">
            <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="0.939">
            <gDNA_exon_boundary e_start="143510" e_stop="144170" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142065" stop="142066"/>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142189" stop="142248"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142401" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143312" stop="143359"/>
              <exon start="143510" stop="144170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421745" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CC : GTCCATTATTATGTGCAATCACACATTCAGTTCAATGAATATCGCGATCGTGTAATTCTG : CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG : CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG : GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG : ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAGCAGAGGTTTTCTCCTAATTAGACGCCTCACTCAAATTTTATATGTTATAGTTGCACGAGGGGTATTTTCAATATACCAAGTATGTATAGGGGAGATGCGGTTGACATGTATTATTGTTATGTTAGATGTACATAAGAGGCATATGTTGCCTGAGCTCTTACTAGTCATCGCATGTATTAATAATACAAATTATCCATCACTGATGCTGACCCTTTTATGTATTGACACTATGATATAAATAATGTCCAGCACA</gDNA_template>
            <first_frame> P :   S  I  I  M  C  N  H  T  F  S  S  M  N  I  A  I  V  *  F  C :   L  L  Q  V  R  S  M  G  N  V  S  A  N  L  *  R  F  *  I  *  P  A  *  N  F  Q  L  *  T  K  *  S :   Y  *  L  *  F  P  Q  L  M  T  L  I  T  R  R  R  *  L  H  T  T  L  S  M  L  P  I  S  F  Q  P  V  G  R :   *  S  N  L  F  Y  R  R  E  P  E  K  R  F  K  F  Y  Q  V  V  D  R  M  I  Y  *  R :   S  W  T  I  R  H  C  P  I  F  A  G  E  K  V  L  D  L  P  N  T  Q  A  A  Q  V  K  I  V  I  P  W  I  I  H  S  T  S  N  F  M  I  T  *  S  S  R  H  C  F  A  D  L  F  G  Q  L  N  R  A  L  S  M  W  I  F  L  M  L  S  L  R  G  L  S  L  F  R  R  W  H  Q  N  F  K  S  S  V  S  K  M  D  F  L  N  H  *  M  I  L  I  S  M  I  I  K  H  R  *  *  E  F  G  S  L  C  T  R  *  Q  F  W  I  L  M  Q  V  Q  Y  *  *  L  E  Q  Y  S  R  G  F  L  L  I  R  R  L  T  Q  I  L  Y  V  I  V  A  R  G  V  F  S  I  Y  Q  V  C  I  G  E  M  R  L  T  C  I  I  V  M  L  D  V  H  K  R  H  M  L  P  E  L  L  L  V  I  A  C  I  N  N  T  N  Y  P  S  L  M  L  T  L  L  C  I  D  T  M  I  *  I  M  S  S  T </first_frame>
            <second_frame>   : R  P  L  L  C  A  I  T  H  S  V  Q  *  I  S  R  S  C  N  S   : A  C  C  K  *  E  V  W  E  T  Y  Q  Q  I  S  E  G  F  R  Y  D  R  L  E  T  F  S  S  K  P  N  K   : A  I  D  Y  N  F  L  N  *  *  P  *  L  P  G  E  G  S  C  I  L  H  C  Q  C  S  L  Y  L  F  S  L  L  E   : G  S  Q  T  S  S  T  G  E  N  P  K  K  G  S  S  F  I  R  L  W  T  G  *  S  I  E   : D  H  G  L  F  V  T  A  P  F  L  P  E  R  R  F  W  I  F  Q  I  L  R  Q  L  K  *  K  L  L  F  P  G  S  S  I  P  P  A  T  L  *  L  H  K  A  A  G  I  A  S  Q  T  C  S  A  S  *  T  G  L  C  P  C  G  F  S  *  C  C  H  *  G  D  *  V  C  S  D  V  G  I  R  I  S  K  V  R  *  A  K  W  T  F  S  I  T  R  *  S  *  Y  Q  *  S  S  S  I  D  N  K  S  L  G  H  Y  A  L  A  D  N  S  G  F  S  C  K  Y  S  I  N  S  S  S  S  I  A  E  V  F  S  *  L  D  A  S  L  K  F  Y  M  L  *  L  H  E  G  Y  F  Q  Y  T  K  Y  V  *  G  R  C  G  *  H  V  L  L  L  C  *  M  Y  I  R  G  I  C  C  L  S  S  Y  *  S  S  H  V  L  I  I  Q  I  I  H  H  *  C  *  P  F  Y  V  L  T  L  *  Y  K  *  C  P  A   </second_frame>
            <third_frame>   :  V  H  Y  Y  V  Q  S  H  I  Q  F  N  E  Y  R  D  R  V  I  L  :  P  A  A  S  K  K  Y  G  K  R  I  S  K  S  L  K  V  L  D  M  T  G  L  K  L  S  A  L  N  Q  I  K  :  L  L  T  I  I  S  S  I  D  D  L  N  Y  P  E  K  V  V  A  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  V  V  K  P  L  L  Q  E  R  T  R  K  K  V  Q  V  L  S  G  C  G  Q  D  D  L  L  K  :  I  M  D  Y  S  S  L  P  H  F  C  R  R  E  G  S  G  S  S  K  Y  S  G  S  S  S  E  N  C  Y  S  L  D  H  P  F  H  Q  Q  L  Y  D  Y  I  K  Q  Q  A  L  L  R  R  P  V  R  P  V  K  Q  G  S  V  H  V  D  F  P  D  A  V  T  E  G  T  E  F  V  Q  T  L  A  S  E  F  Q  K  F  G  K  Q  N  G  L  S  Q  S  L  D  D  L  N  I  N  D  H  Q  A  *  I  I  R  V  W  V  I  M  H  S  L  T  I  L  D  S  H  A  S  T  V  L  I  A  R  A  V  *  Q  R  F  S  P  N  *  T  P  H  S  N  F  I  C  Y  S  C  T  R  G  I  F  N  I  P  S  M  Y  R  G  D  A  V  D  M  Y  Y  C  Y  V  R  C  T  *  E  A  Y  V  A  *  A  L  T  S  H  R  M  Y  *  *  Y  K  L  S  I  T  D  A  D  P  F  M  Y  *  H  Y  D  I  N  N  V  Q  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142189" stop="142248"/>
                    <exon start="142339" stop="142434"/>
                    <exon start="143064" stop="143165"/>
                    <exon start="143279" stop="143359"/>
                    <exon start="143510" stop="143833"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHYYVQSHIQFNEYRDRVILPAASKKYGKRISKSLKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKVVAYYIVNAPYIFSACWKVVKPLLQERTRKKVQVLSGCGQDDLLKIMDYSSLPHFCRREGSGSSKYSGSSSENCYSLDHPFHQQLYDYIKQQALLRRPVRPVKQGSVHVDFPDAVTEGTEFVQTLASEFQKFGKQNGLSQSLDDLNINDHQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143904" stop="144155"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEQYSRGFLLIRRLTQILYVIVARGVFSIYQVCIGEMRLTCIIVMLDVHKRHMLPELLLVIACINNTNYPSLMLTLLCIDTMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="139845" e_stop="139962"/>
            <exon e_start="140743" e_stop="140820"/>
            <exon e_start="140942" e_stop="140995"/>
            <exon e_start="142339" e_stop="142434"/>
            <exon e_start="143064" e_stop="143165"/>
            <exon e_start="143279" e_stop="143359"/>
            <exon e_start="143510" e_stop="144170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.951" e_score="0.992"/>
          <exon-intron don_prob="0.885" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.933" e_score="1.000"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="139845" e_stop="139962" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.951">
            <gDNA_intron_boundary i_start="139963" i_stop="140742" i_length="780"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="140743" e_stop="140820" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.885" acc_prob="1.000">
            <gDNA_intron_boundary i_start="140821" i_stop="140941" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="140942" e_stop="140995" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.920">
            <gDNA_intron_boundary i_start="140996" i_stop="142338" i_length="1343"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="142339" e_stop="142434" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.810">
            <gDNA_intron_boundary i_start="142435" i_stop="143063" i_length="629"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="143064" e_stop="143165" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="143166" i_stop="143278" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="143279" e_stop="143359" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.895" acc_prob="0.933">
            <gDNA_intron_boundary i_start="143360" i_stop="143509" i_length="150"/>
          </intron>
          <exon e_serial="7" e_score="0.939">
            <gDNA_exon_boundary e_start="143510" e_stop="144170" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139845" stop="139962"/>
              <exon start="140743" stop="140820"/>
              <exon start="140942" stop="140995"/>
              <exon start="142339" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142401" stop="142434"/>
              <exon start="143064" stop="143165"/>
              <exon start="143279" stop="143359"/>
              <exon start="143510" stop="143917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143312" stop="143359"/>
              <exon start="143510" stop="144170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421745" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATTTTATTTACTTTTCTTCATTCGCTCTGTCCTCTCTCTTCTCTGTTTCTGTAGTAGCCATGTGTGTGATTTCAGCAAGAATCCATCGCTCAGTTTGAAGCTTTAATGGAACAAG : AAACCTATCATTCCTACTGAGCTTTACAGATCAATTCGTGATTCTCAACTAATAGGAATGCCAGGTTACACGAAAGAG : GGCCTTCCAGTATTCGCTTTTGGTGCAGGACTCAGCACATATGATAAAGCATCG : CCTGCTGCAAGTAAGAAGTATGGGAAACGTATCAGCAAATCTCTGAAGGTTTTAGATATGACCGGCTTGAAACTTTCAGCTCTAAACCAAATAAAG : CTATTGACTATAATTTCCTCAATTGATGACCTTAATTACCCGGAGAAGGTAGTTGCATACTACATTGTCAATGCTCCCTATATCTTTTCAGCCTGTTGGAAG : GTAGTCAAACCTCTTCTACAGGAGAGAACCCGAAAAAAGGTTCAAGTTTTATCAGGTTGTGGACAGGATGATCTATTGAAG : ATCATGGACTATTCGTCACTGCCCCATTTTTGCCGGAGAGAAGGTTCTGGATCTTCCAAATACTCAGGCAGCTCAAGTGAAAATTGTTATTCCCTGGATCATCCATTCCACCAGCAACTTTATGATTACATAAAGCAGCAGGCATTGCTTCGCAGACCTGTTCGGCCAGTTAAACAGGGCTCTGTCCATGTGGATTTTCCTGATGCTGTCACTGAGGGGACTGAGTTTGTTCAGACGTTGGCATCAGAATTTCAAAAGTTCGGTAAGCAAAATGGACTTTCTCAATCACTAGATGATCTTAATATCAATGATCATCAAGCATAGATAATAAGAGTTTGGGTCATTATGCACTCGCTGACAATTCTGGATTCTCATGCAAGTACAGTATTAATAGCTCGAGCAGTATAGCAGAGGTTTTCTCCTAATTAGACGCCTCACTCAAATTTTATATGTTATAGTTGCACGAGGGGTATTTTCAATATACCAAGTATGTATAGGGGAGATGCGGTTGACATGTATTATTGTTATGTTAGATGTACATAAGAGGCATATGTTGCCTGAGCTCTTACTAGTCATCGCATGTATTAATAATACAAATTATCCATCACTGATGCTGACCCTTTTATGTATTGACACTATGATATAAATAATGTCCAGCACA</gDNA_template>
            <first_frame> Y  I  L  F  T  F  L  H  S  L  C  P  L  S  S  L  F  L  *  *  P  C  V  *  F  Q  Q  E  S  I  A  Q  F  E  A  L  M  E  Q   : E  T  Y  H  S  Y  *  A  L  Q  I  N  S  *  F  S  T  N  R  N  A  R  L  H  E  R   : G  P  S  S  I  R  F  W  C  R  T  Q  H  I  *  *  S  I   : A  C  C  K  *  E  V  W  E  T  Y  Q  Q  I  S  E  G  F  R  Y  D  R  L  E  T  F  S  S  K  P  N  K   : A  I  D  Y  N  F  L  N  *  *  P  *  L  P  G  E  G  S  C  I  L  H  C  Q  C  S  L  Y  L  F  S  L  L  E   : G  S  Q  T  S  S  T  G  E  N  P  K  K  G  S  S  F  I  R  L  W  T  G  *  S  I  E   : D  H  G  L  F  V  T  A  P  F  L  P  E  R  R  F  W  I  F  Q  I  L  R  Q  L  K  *  K  L  L  F  P  G  S  S  I  P  P  A  T  L  *  L  H  K  A  A  G  I  A  S  Q  T  C  S  A  S  *  T  G  L  C  P  C  G  F  S  *  C  C  H  *  G  D  *  V  C  S  D  V  G  I  R  I  S  K  V  R  *  A  K  W  T  F  S  I  T  R  *  S  *  Y  Q  *  S  S  S  I  D  N  K  S  L  G  H  Y  A  L  A  D  N  S  G  F  S  C  K  Y  S  I  N  S  S  S  S  I  A  E  V  F  S  *  L  D  A  S  L  K  F  Y  M  L  *  L  H  E  G  Y  F  Q  Y  T  K  Y  V  *  G  R  C  G  *  H  V  L  L  L  C  *  M  Y  I  R  G  I  C  C  L  S  S  Y  *  S  S  H  V  L  I  I  Q  I  I  H  H  *  C  *  P  F  Y  V  L  T  L  *  Y  K  *  C  P  A   </first_frame>
            <second_frame>  I  F  Y  L  L  F  F  I  R  S  V  L  S  L  L  C  F  C  S  S  H  V  C  D  F  S  K  N  P  S  L  S  L  K  L  *  W  N  K  :  K  P  I  I  P  T  E  L  Y  R  S  I  R  D  S  Q  L  I  G  M  P  G  Y  T  K  E  :  G  L  P  V  F  A  F  G  A  G  L  S  T  Y  D  K  A  S  :  P  A  A  S  K  K  Y  G  K  R  I  S  K  S  L  K  V  L  D  M  T  G  L  K  L  S  A  L  N  Q  I  K  :  L  L  T  I  I  S  S  I  D  D  L  N  Y  P  E  K  V  V  A  Y  Y  I  V  N  A  P  Y  I  F  S  A  C  W  K  :  V  V  K  P  L  L  Q  E  R  T  R  K  K  V  Q  V  L  S  G  C  G  Q  D  D  L  L  K  :  I  M  D  Y  S  S  L  P  H  F  C  R  R  E  G  S  G  S  S  K  Y  S  G  S  S  S  E  N  C  Y  S  L  D  H  P  F  H  Q  Q  L  Y  D  Y  I  K  Q  Q  A  L  L  R  R  P  V  R  P  V  K  Q  G  S  V  H  V  D  F  P  D  A  V  T  E  G  T  E  F  V  Q  T  L  A  S  E  F  Q  K  F  G  K  Q  N  G  L  S  Q  S  L  D  D  L  N  I  N  D  H  Q  A  *  I  I  R  V  W  V  I  M  H  S  L  T  I  L  D  S  H  A  S  T  V  L  I  A  R  A  V  *  Q  R  F  S  P  N  *  T  P  H  S  N  F  I  C  Y  S  C  T  R  G  I  F  N  I  P  S  M  Y  R  G  D  A  V  D  M  Y  Y  C  Y  V  R  C  T  *  E  A  Y  V  A  *  A  L  T  S  H  R  M  Y  *  *  Y  K  L  S  I  T  D  A  D  P  F  M  Y  *  H  Y  D  I  N  N  V  Q  H  </second_frame>
            <third_frame>   Y  F  I  Y  F  S  S  F  A  L  S  S  L  F  S  V  S  V  V  A  M  C  V  I  S  A  R  I  H  R  S  V  *  S  F  N  G  T  R :   N  L  S  F  L  L  S  F  T  D  Q  F  V  I  L  N  *  *  E  C  Q  V  T  R  K  R :   A  F  Q  Y  S  L  L  V  Q  D  S  A  H  M  I  K  H  R :   L  L  Q  V  R  S  M  G  N  V  S  A  N  L  *  R  F  *  I  *  P  A  *  N  F  Q  L  *  T  K  *  S :   Y  *  L  *  F  P  Q  L  M  T  L  I  T  R  R  R  *  L  H  T  T  L  S  M  L  P  I  S  F  Q  P  V  G  R :   *  S  N  L  F  Y  R  R  E  P  E  K  R  F  K  F  Y  Q  V  V  D  R  M  I  Y  *  R :   S  W  T  I  R  H  C  P  I  F  A  G  E  K  V  L  D  L  P  N  T  Q  A  A  Q  V  K  I  V  I  P  W  I  I  H  S  T  S  N  F  M  I  T  *  S  S  R  H  C  F  A  D  L  F  G  Q  L  N  R  A  L  S  M  W  I  F  L  M  L  S  L  R  G  L  S  L  F  R  R  W  H  Q  N  F  K  S  S  V  S  K  M  D  F  L  N  H  *  M  I  L  I  S  M  I  I  K  H  R  *  *  E  F  G  S  L  C  T  R  *  Q  F  W  I  L  M  Q  V  Q  Y  *  *  L  E  Q  Y  S  R  G  F  L  L  I  R  R  L  T  Q  I  L  Y  V  I  V  A  R  G  V  F  S  I  Y  Q  V  C  I  G  E  M  R  L  T  C  I  I  V  M  L  D  V  H  K  R  H  M  L  P  E  L  L  L  V  I  A  C  I  N  N  T  N  Y  P  S  L  M  L  T  L  L  C  I  D  T  M  I  *  I  M  S  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139954" stop="139962"/>
                    <exon start="140743" stop="140820"/>
                    <exon start="140942" stop="140995"/>
                    <exon start="142339" stop="142434"/>
                    <exon start="143064" stop="143165"/>
                    <exon start="143279" stop="143359"/>
                    <exon start="143510" stop="143833"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WNKKPIIPTELYRSIRDSQLIGMPGYTKEGLPVFAFGAGLSTYDKASPAASKKYGKRISKSLKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKVVAYYIVNAPYIFSACWKVVKPLLQERTRKKVQVLSGCGQDDLLKIMDYSSLPHFCRREGSGSSKYSGSSSENCYSLDHPFHQQLYDYIKQQALLRRPVRPVKQGSVHVDFPDAVTEGTEFVQTLASEFQKFGKQNGLSQSLDDLNINDHQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143904" stop="144155"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEQYSRGFLLIRRLTQILYVIVARGVFSIYQVCIGEMRLTCIIVMLDVHKRHMLPELLLVIACINNTNYPSLMLTLLCIDTMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="145609" PGL_stop="152907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145609" e_stop="145631"/>
            <exon e_start="146415" e_stop="146494"/>
            <exon e_start="152444" e_stop="152890"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.979" e_score="0.609"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.637"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.609">
            <gDNA_exon_boundary e_start="145609" e_stop="145631" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="145632" i_stop="146414" i_length="783"/>
          </intron>
          <exon e_serial="2" e_score="0.637">
            <gDNA_exon_boundary e_start="146415" e_stop="146494" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="146495" i_stop="152443" i_length="5949"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="152444" e_stop="152890" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145609" stop="145631"/>
              <exon start="146415" stop="146494"/>
              <exon start="152444" stop="152890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715416" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTATTAGCCTTTTTTGGGGA : GAATAGAGGTTTGCGCGCACCCAAAAGGCTACTTCAATTATTCTTTTTTCGTTTCTCTTTTTCTATTTTTACTTTTTTGG : GGTGCTAATGTTACTGGTTCCATACACCACAAAATGCTTACAAATCTACAGTTCACAAGAATCCGCGGATCATATGAAGGAGGGAGGAACTACAACAGACGCACTTCTGTTACTAATCTAAACAAACAAAATATACAAAATGAAGACACAAGACTACAACAAAAACCGAGCTGCAACACAGGATCGGTTCGTCGGGTAAGTTAATGCCAACTTACTACACTAGAGCTGTACAATGCCTAAGAGAACTGCTATTGATGCATATCAGTTACCTCTAGACCGCAGCTACACAAACTATGGGAATGCACATTCTTGTCCTTGCTCCCTACCTTTTAATAAACCTGTGACCTACCATTTTCTATGTGGTAAACTGTACTTCATAAACTTATTAATGTTACTGTTAATGGTATCATCTTCCTAGGATGACGGTATTTGGATTGATGCTACTTG</gDNA_template>
            <first_frame> L  L  L  A  F  F  G  E :   N  R  G  L  R  A  P  K  R  L  L  Q  L  F  F  F  R  F  S  F  S  I  F  T  F  L   : G  C  *  C  Y  W  F  H  T  P  Q  N  A  Y  K  S  T  V  H  K  N  P  R  I  I  *  R  R  E  E  L  Q  Q  T  H  F  C  Y  *  S  K  Q  T  K  Y  T  K  *  R  H  K  T  T  T  K  T  E  L  Q  H  R  I  G  S  S  G  K  L  M  P  T  Y  Y  T  R  A  V  Q  C  L  R  E  L  L  L  M  H  I  S  Y  L  *  T  A  A  T  Q  T  M  G  M  H  I  L  V  L  A  P  Y  L  L  I  N  L  *  P  T  I  F  Y  V  V  N  C  T  S  *  T  Y  *  C  Y  C  *  W  Y  H  L  P  R  M  T  V  F  G  L  M  L  L  </first_frame>
            <second_frame>  Y  Y  *  P  F  L  G   : R  I  E  V  C  A  H  P  K  G  Y  F  N  Y  S  F  F  V  S  L  F  L  F  L  L  F  W  :  G  A  N  V  T  G  S  I  H  H  K  M  L  T  N  L  Q  F  T  R  I  R  G  S  Y  E  G  G  R  N  Y  N  R  R  T  S  V  T  N  L  N  K  Q  N  I  Q  N  E  D  T  R  L  Q  Q  K  P  S  C  N  T  G  S  V  R  R  V  S  *  C  Q  L  T  T  L  E  L  Y  N  A  *  E  N  C  Y  *  C  I  S  V  T  S  R  P  Q  L  H  K  L  W  E  C  T  F  L  S  L  L  P  T  F  *  *  T  C  D  L  P  F  S  M  W  *  T  V  L  H  K  L  I  N  V  T  V  N  G  I  I  F  L  G  *  R  Y  L  D  *  C  Y  L </second_frame>
            <third_frame>   I  I  S  L  F  W  G  :  E  *  R  F  A  R  T  Q  K  A  T  S  I  I  L  F  S  F  L  F  F  Y  F  Y  F  F  G :   V  L  M  L  L  V  P  Y  T  T  K  C  L  Q  I  Y  S  S  Q  E  S  A  D  H  M  K  E  G  G  T  T  T  D  A  L  L  L  L  I  *  T  N  K  I  Y  K  M  K  T  Q  D  Y  N  K  N  R  A  A  T  Q  D  R  F  V  G  *  V  N  A  N  L  L  H  *  S  C  T  M  P  K  R  T  A  I  D  A  Y  Q  L  P  L  D  R  S  Y  T  N  Y  G  N  A  H  S  C  P  C  S  L  P  F  N  K  P  V  T  Y  H  F  L  C  G  K  L  Y  F  I  N  L  L  M  L  L  L  M  V  S  S  S  *  D  D  G  I  W  I  D  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145619" stop="145631"/>
                    <exon start="146415" stop="146494"/>
                    <exon start="152444" stop="152647"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFLGRIEVCAHPKGYFNYSFFVSLFLFLLFWGANVTGSIHHKMLTNLQFTRIRGSYEGGRNYNRRTSVTNLNKQNIQNEDTRLQQKPSCNTGSVRRVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="152667" stop="152861"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCTMPKRTAIDAYQLPLDRSYTNYGNAHSCPCSLPFNKPVTYHFLCGKLYFINLLMLLLMVSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="151751" e_stop="151769"/>
            <exon e_start="152444" e_stop="152907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.579"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.579">
            <gDNA_exon_boundary e_start="151751" e_stop="151769" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="151770" i_stop="152443" i_length="674"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="152444" e_stop="152907" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151751" stop="151769"/>
              <exon start="152444" stop="152907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233888" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTTTATATATTAAAT : GGTGCTAATGTTACTGGTTCCATACACCACAAAATGCTTACAAATCTACAGTTCACAAGAATCCGCGGATCATATGAAGGAGGGAGGAACTACAACAGACGCACTTCTGTTACTAATCTAAACAAACAAAATATACAAAATGAAGACACAAGACTACAACAAAAACCGAGCTGCAACACAGGATCGGTTCGTCGGGTAAGTTAATGCCAACTTACTACACTAGAGCTGTACAATGCCTAAGAGAACTGCTATTGATGCATATCAGTTACCTCTAGACCGCAGCTACACAAACTATGGGAATGCACATTCTTGTCCTTGCTCCCTACCTTTTAATAAACCTGTGACCTACCATTTTCTATGTGGTAAACTGTACTTCATAAACTTATTAATGTTACTGTTAATGGTATCATCTTCCTAGGATGACGGTATTTGGATTGATGCTACTTGCTCTCCAGGATGCTGCA</gDNA_template>
            <first_frame> N  F  L  Y  I  K   : W  C  *  C  Y  W  F  H  T  P  Q  N  A  Y  K  S  T  V  H  K  N  P  R  I  I  *  R  R  E  E  L  Q  Q  T  H  F  C  Y  *  S  K  Q  T  K  Y  T  K  *  R  H  K  T  T  T  K  T  E  L  Q  H  R  I  G  S  S  G  K  L  M  P  T  Y  Y  T  R  A  V  Q  C  L  R  E  L  L  L  M  H  I  S  Y  L  *  T  A  A  T  Q  T  M  G  M  H  I  L  V  L  A  P  Y  L  L  I  N  L  *  P  T  I  F  Y  V  V  N  C  T  S  *  T  Y  *  C  Y  C  *  W  Y  H  L  P  R  M  T  V  F  G  L  M  L  L  A  L  Q  D  A  A </first_frame>
            <second_frame>  I  F  Y  I  L  N  :  G  A  N  V  T  G  S  I  H  H  K  M  L  T  N  L  Q  F  T  R  I  R  G  S  Y  E  G  G  R  N  Y  N  R  R  T  S  V  T  N  L  N  K  Q  N  I  Q  N  E  D  T  R  L  Q  Q  K  P  S  C  N  T  G  S  V  R  R  V  S  *  C  Q  L  T  T  L  E  L  Y  N  A  *  E  N  C  Y  *  C  I  S  V  T  S  R  P  Q  L  H  K  L  W  E  C  T  F  L  S  L  L  P  T  F  *  *  T  C  D  L  P  F  S  M  W  *  T  V  L  H  K  L  I  N  V  T  V  N  G  I  I  F  L  G  *  R  Y  L  D  *  C  Y  L  L  S  R  M  L   </second_frame>
            <third_frame>   F  F  I  Y  *  M :   V  L  M  L  L  V  P  Y  T  T  K  C  L  Q  I  Y  S  S  Q  E  S  A  D  H  M  K  E  G  G  T  T  T  D  A  L  L  L  L  I  *  T  N  K  I  Y  K  M  K  T  Q  D  Y  N  K  N  R  A  A  T  Q  D  R  F  V  G  *  V  N  A  N  L  L  H  *  S  C  T  M  P  K  R  T  A  I  D  A  Y  Q  L  P  L  D  R  S  Y  T  N  Y  G  N  A  H  S  C  P  C  S  L  P  F  N  K  P  V  T  Y  H  F  L  C  G  K  L  Y  F  I  N  L  L  M  L  L  L  M  V  S  S  S  *  D  D  G  I  W  I  D  A  T  C  S  P  G  C  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="151752" stop="151769"/>
                    <exon start="152444" stop="152647"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFYILNGANVTGSIHHKMLTNLQFTRIRGSYEGGRNYNRRTSVTNLNKQNIQNEDTRLQQKPSCNTGSVRRVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="152667" stop="152861"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCTMPKRTAIDAYQLPLDRSYTNYGNAHSCPCSLPFNKPVTYHFLCGKLYFINLLMLLLMVSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="151434" e_stop="151444"/>
            <exon e_start="152495" e_stop="152882"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.973" e_score="0.545"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.545">
            <gDNA_exon_boundary e_start="151434" e_stop="151444" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.973">
            <gDNA_intron_boundary i_start="151445" i_stop="152494" i_length="1050"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="152495" e_stop="152882" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151434" stop="151444"/>
              <exon start="152495" stop="152882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616181" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTAATTTG : TTCACAAGAATCCGCGGATCATATGAAGGAGGGAGGAACTACAACAGACGCACTTCTGTTACTAATCTAAACAAACAAAATATACAAAATGAAGACACAAGACTACAACAAAAACCGAGCTGCAACACAGGATCGGTTCGTCGGGTAAGTTAATGCCAACTTACTACACTAGAGCTGTACAATGCCTAAGAGAACTGCTATTGATGCATATCAGTTACCTCTAGACCGCAGCTACACAAACTATGGGAATGCACATTCTTGTCCTTGCTCCCTACCTTTTAATAAACCTGTGACCTACCATTTTCTATGTGGTAAACTGTACTTCATAAACTTATTAATGTTACTGTTAATGGTATCATCTTCCTAGGATGACGGTATTTGGATTGAT</gDNA_template>
            <first_frame> *  L  I  C :   S  Q  E  S  A  D  H  M  K  E  G  G  T  T  T  D  A  L  L  L  L  I  *  T  N  K  I  Y  K  M  K  T  Q  D  Y  N  K  N  R  A  A  T  Q  D  R  F  V  G  *  V  N  A  N  L  L  H  *  S  C  T  M  P  K  R  T  A  I  D  A  Y  Q  L  P  L  D  R  S  Y  T  N  Y  G  N  A  H  S  C  P  C  S  L  P  F  N  K  P  V  T  Y  H  F  L  C  G  K  L  Y  F  I  N  L  L  M  L  L  L  M  V  S  S  S  *  D  D  G  I  W  I  D </first_frame>
            <second_frame>  N  *  F   : V  H  K  N  P  R  I  I  *  R  R  E  E  L  Q  Q  T  H  F  C  Y  *  S  K  Q  T  K  Y  T  K  *  R  H  K  T  T  T  K  T  E  L  Q  H  R  I  G  S  S  G  K  L  M  P  T  Y  Y  T  R  A  V  Q  C  L  R  E  L  L  L  M  H  I  S  Y  L  *  T  A  A  T  Q  T  M  G  M  H  I  L  V  L  A  P  Y  L  L  I  N  L  *  P  T  I  F  Y  V  V  N  C  T  S  *  T  Y  *  C  Y  C  *  W  Y  H  L  P  R  M  T  V  F  G  L   </second_frame>
            <third_frame>   I  N  L  :  F  T  R  I  R  G  S  Y  E  G  G  R  N  Y  N  R  R  T  S  V  T  N  L  N  K  Q  N  I  Q  N  E  D  T  R  L  Q  Q  K  P  S  C  N  T  G  S  V  R  R  V  S  *  C  Q  L  T  T  L  E  L  Y  N  A  *  E  N  C  Y  *  C  I  S  V  T  S  R  P  Q  L  H  K  L  W  E  C  T  F  L  S  L  L  P  T  F  *  *  T  C  D  L  P  F  S  M  W  *  T  V  L  H  K  L  I  N  V  T  V  N  G  I  I  F  L  G  *  R  Y  L  D  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="152667" stop="152861"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCTMPKRTAIDAYQLPLDRSYTNYGNAHSCPCSLPFNKPVTYHFLCGKLYFINLLMLLLMVSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="147511" e_stop="147533"/>
            <exon e_start="147784" e_stop="148209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.389" e_score="0.783"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.783">
            <gDNA_exon_boundary e_start="147511" e_stop="147533" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.389">
            <gDNA_intron_boundary i_start="147534" i_stop="147783" i_length="250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="147784" e_stop="148209" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="147511" stop="147533"/>
              <exon start="147784" stop="148209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225610" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTATTTTTTCTCTTTGTGAA : CTTTAATGCATCGATTTCTTAAAGATAGCAGTCAAAATGACGATGAGCTTCACCAAAAATACAGAACAGCAATGGTATGTTAATCCATCAGCTCAATGCTGCTATTGAAAAGAACTAGGAGAAGCAATGTTCTAACAAGGATTTAGCTGGAGCACAAGTACACACCATTATGAATATATATAATACATTTGAGATACAACTAAGTGCTGGCTCTCCTACTGGATATATCACACATGCTAAACCTTTACCTGCGACAAGAAAGTAAATCTAAGGACCAACCAATCCTAACTTCAACAGATCTATCTCCGTCTTACTTAGAGGGAGCTGCAGAAGGGAGATCGATCAATATGATCTTCAGTTCTATATCCCCAGAATCCACATCACAAAGCCTCAACCAGACATCTTGAACAACCTCACCATTCACCC</gDNA_template>
            <first_frame> F  L  F  F  L  F  V  N :   F  N  A  S  I  S  *  R  *  Q  S  K  *  R  *  A  S  P  K  I  Q  N  S  N  G  M  L  I  H  Q  L  N  A  A  I  E  K  N  *  E  K  Q  C  S  N  K  D  L  A  G  A  Q  V  H  T  I  M  N  I  Y  N  T  F  E  I  Q  L  S  A  G  S  P  T  G  Y  I  T  H  A  K  P  L  P  A  T  R  K  *  I  *  G  P  T  N  P  N  F  N  R  S  I  S  V  L  L  R  G  S  C  R  R  E  I  D  Q  Y  D  L  Q  F  Y  I  P  R  I  H  I  T  K  P  Q  P  D  I  L  N  N  L  T  I  H   </first_frame>
            <second_frame>  F  Y  F  F  S  L  *   : T  L  M  H  R  F  L  K  D  S  S  Q  N  D  D  E  L  H  Q  K  Y  R  T  A  M  V  C  *  S  I  S  S  M  L  L  L  K  R  T  R  R  S  N  V  L  T  R  I  *  L  E  H  K  Y  T  P  L  *  I  Y  I  I  H  L  R  Y  N  *  V  L  A  L  L  L  D  I  S  H  M  L  N  L  Y  L  R  Q  E  S  K  S  K  D  Q  P  I  L  T  S  T  D  L  S  P  S  Y  L  E  G  A  A  E  G  R  S  I  N  M  I  F  S  S  I  S  P  E  S  T  S  Q  S  L  N  Q  T  S  *  T  T  S  P  F  T  </second_frame>
            <third_frame>   F  I  F  S  L  C  E  :  L  *  C  I  D  F  L  K  I  A  V  K  M  T  M  S  F  T  K  N  T  E  Q  Q  W  Y  V  N  P  S  A  Q  C  C  Y  *  K  E  L  G  E  A  M  F  *  Q  G  F  S  W  S  T  S  T  H  H  Y  E  Y  I  *  Y  I  *  D  T  T  K  C  W  L  S  Y  W  I  Y  H  T  C  *  T  F  T  C  D  K  K  V  N  L  R  T  N  Q  S  *  L  Q  Q  I  Y  L  R  L  T  *  R  E  L  Q  K  G  D  R  S  I  *  S  S  V  L  Y  P  Q  N  P  H  H  K  A  S  T  R  H  L  E  Q  P  H  H  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="147987" stop="148190"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLALLLDISHMLNLYLRQESKSKDQPILTSTDLSPSYLEGAAEGRSINMIFSSISPESTSQSLNQTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="151301" PGL_stop="147507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="151032" e_stop="150834"/>
            <exon e_start="150750" e_stop="150655"/>
            <exon e_start="148393" e_stop="147759"/>
            <exon e_start="147522" e_stop="147507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="151032" e_stop="150834" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="150750" e_stop="150655" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="148393" e_stop="147759" e_length="635"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="147758" i_stop="147523" i_length="236"/>
          </intron>
          <exon e_serial="4" e_score="0.938">
            <gDNA_exon_boundary e_start="147522" e_stop="147507" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151032" stop="150834"/>
              <exon start="150750" stop="150655"/>
              <exon start="148393" stop="148113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151024" stop="150834"/>
              <exon start="150750" stop="150655"/>
              <exon start="148393" stop="147775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151021" stop="150834"/>
              <exon start="150750" stop="150655"/>
              <exon start="148393" stop="148146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150973" stop="150834"/>
              <exon start="150750" stop="150655"/>
              <exon start="148393" stop="148095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150695" stop="150655"/>
              <exon start="148393" stop="147759"/>
              <exon start="147522" stop="147507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG : ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG : CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTGAT : AAAAAATAAAAAAAAA</gDNA_template>
            <first_frame> K  K  R  V  F  S  A  L  M  E  *  *  F  Y  L  F  S  C  A  N  L  N  V  Y  V  K  F  S  Q  Y  G  K  Q  I  W  T  G  K  S  Y  S  C  S  R  Q  A  F  G  D  S  G  L  *  E  Q  *  S  L  C  H  S  Q  T  G  *  S   : D  C  K  N  K  G  H  K  *  L  P  *  S  C  L  E  *  R  I  S  F  F  H  F  R  T  C  S  G  S  Q  I   : A  S  V  *  Q  R  P  L  Q  G  R  *  Q  N  G  K  C  S  S  Q  P  S  A  F  S  C  F  C  *  I  E  K  D  S  W  G  Y  R  *  R  N  N  T  E  E  G  Y  S  R  E  *  *  L  S  S  S  G  *  Q  Y  *  L  G  E  W  *  G  C  S  R  C  L  V  E  A  L  *  C  G  F  W  G  Y  R  T  E  D  H  I  D  R  S  P  F  C  S  S  L  *  V  R  R  R  *  I  C  *  S  *  D  W  L  V  L  R  F  T  F  L  S  Q  V  K  V  *  H  V  *  Y  I  Q  *  E  S  Q  H  L  V  V  S  Q  M  Y  Y  I  Y  S  *  W  C  V  L  V  L  Q  L  N  P  C  *  N  I  A  S  P  S  S  F  Q  *  Q  H  *  A  D  G  L  T  Y  H  C  C  S  V  F  L  V  K  L  I  V  I  L  T  A  I  F  K  K  S  M  H  *  S  *  E  K  Y  C  Y  L  D  :  K  K  *  K  K  </first_frame>
            <second_frame>  K  K  G  F  F  L  L  *  W  S  S  N  F  I  C  F  H  V  L  I  *  M  Y  M  S  N  S  V  N  M  G  S  K  F  G  Q  V  K  V  I  V  V  Q  G  R  R  L  V  I  R  D  F  K  S  S  D  P  Y  V  I  L  K  L  G  N  Q  :  T  A  K  T  K  V  I  N  S  C  L  N  P  V  W  N  E  E  F  H  F  S  I  S  E  H  A  Q  V  L  K  L  :  Q  V  F  D  K  D  H  F  K  A  D  D  K  M  G  N  A  H  L  S  L  Q  P  L  V  A  S  A  R  L  R  K  I  L  G  V  T  A  E  G  T  T  L  R  K  V  I  P  E  S  D  N  C  L  A  A  D  S  S  I  N  W  V  N  G  E  V  V  Q  D  V  W  L  R  L  C  D  V  D  S  G  D  I  E  L  K  I  I  L  I  D  L  P  S  A  A  P  S  K  *  D  G  D  R  S  V  E  V  R  I  G  W  S  L  D  L  L  S  C  R  R  *  R  F  S  M  C  D  I  S  S  R  R  A  S  T  *  L  Y  L  K  C  I  I  Y  I  H  N  G  V  Y  L  C  S  S  *  I  L  V  R  T  L  L  L  L  V  L  F  N  S  S  I  E  L  M  D  *  H  T  I  A  V  L  Y  F  W  *  S  S  S  S  F  *  L  L  S  L  R  N  R  C  I  K  A  E  K  S  I  V  T  L  I :   K  N  K  K  K </second_frame>
            <third_frame>   K  K  G  F  F  C  F  N  G  V  V  I  L  F  V  F  M  C  *  F  E  C  I  C  Q  I  Q  S  I  W  E  A  N  L  D  R  *  K  L  *  L  F  K  A  G  V  W  *  F  G  T  L  R  A  V  I  L  M  S  F  S  N  W  V  I  R :   L  Q  K  Q  R  S  *  I  A  A  L  I  L  F  G  M  K  N  F  I  F  P  F  Q  N  M  L  R  F  S  N  C :   K  C  L  T  K  T  T  S  R  P  M  T  K  W  E  M  L  I  S  A  F  S  L  *  L  L  L  L  D  *  E  R  F  L  G  L  P  L  K  E  Q  H  *  G  R  L  F  Q  R  V  I  T  V  *  Q  R  I  A  V  L  I  G  *  M  V  R  L  F  K  M  S  G  *  G  F  V  M  W  I  L  G  I  *  N  *  R  S  Y  *  S  I  S  L  L  Q  L  P  L  S  K  T  E  I  D  L  L  K  L  G  L  V  G  P  *  I  Y  F  L  V  A  G  K  G  L  A  C  V  I  Y  P  V  G  E  P  A  L  S  C  I  S  N  V  L  Y  I  F  I  M  V  C  T  C  A  P  A  K  S  L  L  E  H  C  F  S  *  F  F  S  I  A  A  L  S  *  W  I  N  I  P  L  L  F  C  I  F  G  E  A  H  R  H  F  D  C  Y  L  *  E  I  D  A  L  K  L  R  K  V  L  L  P  *   : *  K  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150968" stop="150834"/>
                    <exon start="150750" stop="150655"/>
                    <exon start="148393" stop="148094"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MYMSNSVNMGSKFGQVKVIVVQGRRLVIRDFKSSDPYVILKLGNQTAKTKVINSCLNPVWNEEFHFSISEHAQVLKLQVFDKDHFKADDKMGNAHLSLQPLVASARLRKILGVTAEGTTLRKVIPESDNCLAADSSINWVNGEVVQDVWLRLCDVDSGDIELKIILIDLPSAAPSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="151301" e_stop="151213"/>
            <exon e_start="150949" e_stop="150834"/>
            <exon e_start="150750" e_stop="150655"/>
            <exon e_start="148393" e_stop="147759"/>
            <exon e_start="147522" e_stop="147507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.918" e_score="0.978"/>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.976"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="151301" e_stop="151213" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.918">
            <gDNA_intron_boundary i_start="151212" i_stop="150950" i_length="263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="150949" e_stop="150834" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="150750" e_stop="150655" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="148393" e_stop="147759" e_length="635"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="147758" i_stop="147523" i_length="236"/>
          </intron>
          <exon e_serial="5" e_score="0.938">
            <gDNA_exon_boundary e_start="147522" e_stop="147507" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151301" stop="151213"/>
              <exon start="150949" stop="150834"/>
              <exon start="150750" stop="150655"/>
              <exon start="148393" stop="147865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151246" stop="151213"/>
              <exon start="150949" stop="150834"/>
              <exon start="150750" stop="150655"/>
              <exon start="148393" stop="147867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151246" stop="151213"/>
              <exon start="150949" stop="150834"/>
              <exon start="150750" stop="150655"/>
              <exon start="148393" stop="148061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151246" stop="151213"/>
              <exon start="150949" stop="150834"/>
              <exon start="150750" stop="150655"/>
              <exon start="148393" stop="148203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150695" stop="150655"/>
              <exon start="148393" stop="147759"/>
              <exon start="147522" stop="147507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAAGTTTAGTCCATTTTGCTTACTGGGTCAAGAGAAGAGAACAGAATAGAAGAAGAGTCAACATTTGCTAGCTCTAATTGAGACCGT : TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG : ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG : CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTGAT : AAAAAATAAAAAAAAA</gDNA_template>
            <first_frame> I  K  F  S  P  F  C  L  L  G  Q  E  K  R  T  E  *  K  K  S  Q  H  L  L  A  L  I  E  T  V :   Q  Y  G  K  Q  I  W  T  G  K  S  Y  S  C  S  R  Q  A  F  G  D  S  G  L  *  E  Q  *  S  L  C  H  S  Q  T  G  *  S   : D  C  K  N  K  G  H  K  *  L  P  *  S  C  L  E  *  R  I  S  F  F  H  F  R  T  C  S  G  S  Q  I   : A  S  V  *  Q  R  P  L  Q  G  R  *  Q  N  G  K  C  S  S  Q  P  S  A  F  S  C  F  C  *  I  E  K  D  S  W  G  Y  R  *  R  N  N  T  E  E  G  Y  S  R  E  *  *  L  S  S  S  G  *  Q  Y  *  L  G  E  W  *  G  C  S  R  C  L  V  E  A  L  *  C  G  F  W  G  Y  R  T  E  D  H  I  D  R  S  P  F  C  S  S  L  *  V  R  R  R  *  I  C  *  S  *  D  W  L  V  L  R  F  T  F  L  S  Q  V  K  V  *  H  V  *  Y  I  Q  *  E  S  Q  H  L  V  V  S  Q  M  Y  Y  I  Y  S  *  W  C  V  L  V  L  Q  L  N  P  C  *  N  I  A  S  P  S  S  F  Q  *  Q  H  *  A  D  G  L  T  Y  H  C  C  S  V  F  L  V  K  L  I  V  I  L  T  A  I  F  K  K  S  M  H  *  S  *  E  K  Y  C  Y  L  D  :  K  K  *  K  K  </first_frame>
            <second_frame>  *  S  L  V  H  F  A  Y  W  V  K  R  R  E  Q  N  R  R  R  V  N  I  C  *  L  *  L  R  P   : F  N  M  G  S  K  F  G  Q  V  K  V  I  V  V  Q  G  R  R  L  V  I  R  D  F  K  S  S  D  P  Y  V  I  L  K  L  G  N  Q  :  T  A  K  T  K  V  I  N  S  C  L  N  P  V  W  N  E  E  F  H  F  S  I  S  E  H  A  Q  V  L  K  L  :  Q  V  F  D  K  D  H  F  K  A  D  D  K  M  G  N  A  H  L  S  L  Q  P  L  V  A  S  A  R  L  R  K  I  L  G  V  T  A  E  G  T  T  L  R  K  V  I  P  E  S  D  N  C  L  A  A  D  S  S  I  N  W  V  N  G  E  V  V  Q  D  V  W  L  R  L  C  D  V  D  S  G  D  I  E  L  K  I  I  L  I  D  L  P  S  A  A  P  S  K  *  D  G  D  R  S  V  E  V  R  I  G  W  S  L  D  L  L  S  C  R  R  *  R  F  S  M  C  D  I  S  S  R  R  A  S  T  *  L  Y  L  K  C  I  I  Y  I  H  N  G  V  Y  L  C  S  S  *  I  L  V  R  T  L  L  L  L  V  L  F  N  S  S  I  E  L  M  D  *  H  T  I  A  V  L  Y  F  W  *  S  S  S  S  F  *  L  L  S  L  R  N  R  C  I  K  A  E  K  S  I  V  T  L  I :   K  N  K  K  K </second_frame>
            <third_frame>   K  V  *  S  I  L  L  T  G  S  R  E  E  N  R  I  E  E  E  S  T  F  A  S  S  N  *  D  R  :  S  I  W  E  A  N  L  D  R  *  K  L  *  L  F  K  A  G  V  W  *  F  G  T  L  R  A  V  I  L  M  S  F  S  N  W  V  I  R :   L  Q  K  Q  R  S  *  I  A  A  L  I  L  F  G  M  K  N  F  I  F  P  F  Q  N  M  L  R  F  S  N  C :   K  C  L  T  K  T  T  S  R  P  M  T  K  W  E  M  L  I  S  A  F  S  L  *  L  L  L  L  D  *  E  R  F  L  G  L  P  L  K  E  Q  H  *  G  R  L  F  Q  R  V  I  T  V  *  Q  R  I  A  V  L  I  G  *  M  V  R  L  F  K  M  S  G  *  G  F  V  M  W  I  L  G  I  *  N  *  R  S  Y  *  S  I  S  L  L  Q  L  P  L  S  K  T  E  I  D  L  L  K  L  G  L  V  G  P  *  I  Y  F  L  V  A  G  K  G  L  A  C  V  I  Y  P  V  G  E  P  A  L  S  C  I  S  N  V  L  Y  I  F  I  M  V  C  T  C  A  P  A  K  S  L  L  E  H  C  F  S  *  F  F  S  I  A  A  L  S  *  W  I  N  I  P  L  L  F  C  I  F  G  E  A  H  R  H  F  D  C  Y  L  *  E  I  D  A  L  K  L  R  K  V  L  L  P  *   : *  K  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="151222" stop="151213"/>
                    <exon start="150949" stop="150834"/>
                    <exon start="150750" stop="150655"/>
                    <exon start="148393" stop="148094"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRPFNMGSKFGQVKVIVVQGRRLVIRDFKSSDPYVILKLGNQTAKTKVINSCLNPVWNEEFHFSISEHAQVLKLQVFDKDHFKADDKMGNAHLSLQPLVASARLRKILGVTAEGTTLRKVIPESDNCLAADSSINWVNGEVVQDVWLRLCDVDSGDIELKIILIDLPSAAPSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="151135" e_stop="151056"/>
            <exon e_start="150949" e_stop="150834"/>
            <exon e_start="150750" e_stop="150655"/>
            <exon e_start="148393" e_stop="147759"/>
            <exon e_start="147522" e_stop="147507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.976"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="151135" e_stop="151056" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="151055" i_stop="150950" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="150949" e_stop="150834" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="150750" e_stop="150655" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="148393" e_stop="147759" e_length="635"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="147758" i_stop="147523" i_length="236"/>
          </intron>
          <exon e_serial="5" e_score="0.938">
            <gDNA_exon_boundary e_start="147522" e_stop="147507" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151135" stop="151056"/>
              <exon start="150949" stop="150834"/>
              <exon start="150750" stop="150655"/>
              <exon start="148393" stop="148056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151135" stop="151056"/>
              <exon start="150949" stop="150834"/>
              <exon start="150750" stop="150655"/>
              <exon start="148393" stop="148120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150695" stop="150655"/>
              <exon start="148393" stop="147759"/>
              <exon start="147522" stop="147507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAATTAATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCA : TCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG : ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG : CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTGAT : AAAAAATAAAAAAAAA</gDNA_template>
            <first_frame> R  K  L  I  *  N  S  N  F  *  F  W  L  R  L  F  L  V  S  E  Y  C  C  C  S  S  H :   Q  Y  G  K  Q  I  W  T  G  K  S  Y  S  C  S  R  Q  A  F  G  D  S  G  L  *  E  Q  *  S  L  C  H  S  Q  T  G  *  S   : D  C  K  N  K  G  H  K  *  L  P  *  S  C  L  E  *  R  I  S  F  F  H  F  R  T  C  S  G  S  Q  I   : A  S  V  *  Q  R  P  L  Q  G  R  *  Q  N  G  K  C  S  S  Q  P  S  A  F  S  C  F  C  *  I  E  K  D  S  W  G  Y  R  *  R  N  N  T  E  E  G  Y  S  R  E  *  *  L  S  S  S  G  *  Q  Y  *  L  G  E  W  *  G  C  S  R  C  L  V  E  A  L  *  C  G  F  W  G  Y  R  T  E  D  H  I  D  R  S  P  F  C  S  S  L  *  V  R  R  R  *  I  C  *  S  *  D  W  L  V  L  R  F  T  F  L  S  Q  V  K  V  *  H  V  *  Y  I  Q  *  E  S  Q  H  L  V  V  S  Q  M  Y  Y  I  Y  S  *  W  C  V  L  V  L  Q  L  N  P  C  *  N  I  A  S  P  S  S  F  Q  *  Q  H  *  A  D  G  L  T  Y  H  C  C  S  V  F  L  V  K  L  I  V  I  L  T  A  I  F  K  K  S  M  H  *  S  *  E  K  Y  C  Y  L  D  :  K  K  *  K  K  </first_frame>
            <second_frame>  E  N  *  F  R  T  Q  I  F  N  F  G  F  A  S  F  W  S  A  S  I  V  V  V  L  L   : I  N  M  G  S  K  F  G  Q  V  K  V  I  V  V  Q  G  R  R  L  V  I  R  D  F  K  S  S  D  P  Y  V  I  L  K  L  G  N  Q  :  T  A  K  T  K  V  I  N  S  C  L  N  P  V  W  N  E  E  F  H  F  S  I  S  E  H  A  Q  V  L  K  L  :  Q  V  F  D  K  D  H  F  K  A  D  D  K  M  G  N  A  H  L  S  L  Q  P  L  V  A  S  A  R  L  R  K  I  L  G  V  T  A  E  G  T  T  L  R  K  V  I  P  E  S  D  N  C  L  A  A  D  S  S  I  N  W  V  N  G  E  V  V  Q  D  V  W  L  R  L  C  D  V  D  S  G  D  I  E  L  K  I  I  L  I  D  L  P  S  A  A  P  S  K  *  D  G  D  R  S  V  E  V  R  I  G  W  S  L  D  L  L  S  C  R  R  *  R  F  S  M  C  D  I  S  S  R  R  A  S  T  *  L  Y  L  K  C  I  I  Y  I  H  N  G  V  Y  L  C  S  S  *  I  L  V  R  T  L  L  L  L  V  L  F  N  S  S  I  E  L  M  D  *  H  T  I  A  V  L  Y  F  W  *  S  S  S  S  F  *  L  L  S  L  R  N  R  C  I  K  A  E  K  S  I  V  T  L  I :   K  N  K  K  K </second_frame>
            <third_frame>   K  I  N  L  E  L  K  F  L  I  L  A  S  P  L  F  G  Q  R  V  L  L  L  F  F  S  :  S  I  W  E  A  N  L  D  R  *  K  L  *  L  F  K  A  G  V  W  *  F  G  T  L  R  A  V  I  L  M  S  F  S  N  W  V  I  R :   L  Q  K  Q  R  S  *  I  A  A  L  I  L  F  G  M  K  N  F  I  F  P  F  Q  N  M  L  R  F  S  N  C :   K  C  L  T  K  T  T  S  R  P  M  T  K  W  E  M  L  I  S  A  F  S  L  *  L  L  L  L  D  *  E  R  F  L  G  L  P  L  K  E  Q  H  *  G  R  L  F  Q  R  V  I  T  V  *  Q  R  I  A  V  L  I  G  *  M  V  R  L  F  K  M  S  G  *  G  F  V  M  W  I  L  G  I  *  N  *  R  S  Y  *  S  I  S  L  L  Q  L  P  L  S  K  T  E  I  D  L  L  K  L  G  L  V  G  P  *  I  Y  F  L  V  A  G  K  G  L  A  C  V  I  Y  P  V  G  E  P  A  L  S  C  I  S  N  V  L  Y  I  F  I  M  V  C  T  C  A  P  A  K  S  L  L  E  H  C  F  S  *  F  F  S  I  A  A  L  S  *  W  I  N  I  P  L  L  F  C  I  F  G  E  A  H  R  H  F  D  C  Y  L  *  E  I  D  A  L  K  L  R  K  V  L  L  P  *   : *  K  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="151125" stop="151056"/>
                    <exon start="150949" stop="150834"/>
                    <exon start="150750" stop="150655"/>
                    <exon start="148393" stop="148094"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRTQIFNFGFASFWSASIVVVLLINMGSKFGQVKVIVVQGRRLVIRDFKSSDPYVILKLGNQTAKTKVINSCLNPVWNEEFHFSISEHAQVLKLQVFDKDHFKADDKMGNAHLSLQPLVASARLRKILGVTAEGTTLRKVIPESDNCLAADSSINWVNGEVVQDVWLRLCDVDSGDIELKIILIDLPSAAPSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="151126" e_stop="150834"/>
            <exon e_start="150750" e_stop="150517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="151126" e_stop="150834" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="150750" e_stop="150517" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151126" stop="150834"/>
              <exon start="150750" stop="150517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG : ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTAC</gDNA_template>
            <first_frame> I  *  N  S  N  F  *  F  W  L  R  L  F  L  V  S  E  Y  C  C  C  S  S  Q  L  S  H  F  I  V  P  *  K  K  G  F  F  C  F  N  G  V  V  I  L  F  V  F  M  C  *  F  E  C  I  C  Q  I  Q  S  I  W  E  A  N  L  D  R  *  K  L  *  L  F  K  A  G  V  W  *  F  G  T  L  R  A  V  I  L  M  S  F  S  N  W  V  I  R :   L  Q  K  Q  R  S  *  I  A  A  L  I  L  F  G  M  K  N  F  I  F  P  F  Q  N  M  L  R  F  S  N  W  *  V  L  N  P  L  K  P  Q  I  H  L  L  D  *  S  C  V  S  Y  C  F  E  L  H  L  H  N  L  G  L  F  L  K  E  *  K  L  L  A  S  C  V  N  V   </first_frame>
            <second_frame>  F  R  T  Q  I  F  N  F  G  F  A  S  F  W  S  A  S  I  V  V  V  L  L  S  *  V  I  L  L  Y  P  K  K  R  V  F  S  A  L  M  E  *  *  F  Y  L  F  S  C  A  N  L  N  V  Y  V  K  F  S  Q  Y  G  K  Q  I  W  T  G  K  S  Y  S  C  S  R  Q  A  F  G  D  S  G  L  *  E  Q  *  S  L  C  H  S  Q  T  G  *  S   : D  C  K  N  K  G  H  K  *  L  P  *  S  C  L  E  *  R  I  S  F  F  H  F  R  T  C  S  G  S  Q  I  G  E  F  *  T  L  S  S  L  K  F  I  Y  L  T  N  L  V  S  H  T  V  L  N  Y  T  C  I  I  L  D  Y  F  L  K  N  E  N  C  W  H  H  V  *  M  L  </second_frame>
            <third_frame>   L  E  L  K  F  L  I  L  A  S  P  L  F  G  Q  R  V  L  L  L  F  F  S  V  E  S  F  Y  C  T  L  K  K  G  F  F  L  L  *  W  S  S  N  F  I  C  F  H  V  L  I  *  M  Y  M  S  N  S  V  N  M  G  S  K  F  G  Q  V  K  V  I  V  V  Q  G  R  R  L  V  I  R  D  F  K  S  S  D  P  Y  V  I  L  K  L  G  N  Q  :  T  A  K  T  K  V  I  N  S  C  L  N  P  V  W  N  E  E  F  H  F  S  I  S  E  H  A  Q  V  L  K  L  V  S  F  E  P  S  Q  A  S  N  S  F  T  *  L  I  L  C  L  I  L  F  *  T  T  L  A  *  S  W  I  I  S  *  R  M  K  I  V  G  I  M  C  K  C  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="21" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150968" stop="150834"/>
                    <exon start="150750" stop="150613"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MYMSNSVNMGSKFGQVKVIVVQGRRLVIRDFKSSDPYVILKLGNQTAKTKVINSCLNPVWNEEFHFSISEHAQVLKLVSFEPSQASNSFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="156276" PGL_stop="152278"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="156276" e_stop="156241"/>
            <exon e_start="156114" e_stop="156028"/>
            <exon e_start="155918" e_stop="155881"/>
            <exon e_start="155401" e_stop="155339"/>
            <exon e_start="155256" e_stop="155102"/>
            <exon e_start="153489" e_stop="153083"/>
            <exon e_start="152997" e_stop="152435"/>
            <exon e_start="152289" e_stop="152278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="0.972"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.977"/>
          <exon-intron don_prob="0.983" acc_prob="0.684" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.388" e_score="0.938"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="156276" e_stop="156241" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="156240" i_stop="156115" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="156114" e_stop="156028" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="156027" i_stop="155919" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="155918" e_stop="155881" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.684">
            <gDNA_intron_boundary i_start="155880" i_stop="155402" i_length="479"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="155401" e_stop="155339" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="155338" i_stop="155257" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="155256" e_stop="155102" e_length="155"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="155101" i_stop="153490" i_length="1612"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="153489" e_stop="153083" e_length="407"/>
          </exon>
          <intron i_serial="6" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="153082" i_stop="152998" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="0.938">
            <gDNA_exon_boundary e_start="152997" e_stop="152435" e_length="563"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.388">
            <gDNA_intron_boundary i_start="152434" i_stop="152290" i_length="145"/>
          </intron>
          <exon e_serial="8" e_score="0.750">
            <gDNA_exon_boundary e_start="152289" e_stop="152278" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156276" stop="156241"/>
              <exon start="156114" stop="156028"/>
              <exon start="155918" stop="155881"/>
              <exon start="155401" stop="155339"/>
              <exon start="155256" stop="155102"/>
              <exon start="153489" stop="153203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156276" stop="156241"/>
              <exon start="156114" stop="156028"/>
              <exon start="155918" stop="155881"/>
              <exon start="155401" stop="155339"/>
              <exon start="155256" stop="155102"/>
              <exon start="153489" stop="153279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156077" stop="156028"/>
              <exon start="155918" stop="155881"/>
              <exon start="155401" stop="155339"/>
              <exon start="155256" stop="155102"/>
              <exon start="153489" stop="153083"/>
              <exon start="152997" stop="152966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156076" stop="156028"/>
              <exon start="155918" stop="155881"/>
              <exon start="155401" stop="155339"/>
              <exon start="155256" stop="155102"/>
              <exon start="153489" stop="153237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156076" stop="156028"/>
              <exon start="155918" stop="155881"/>
              <exon start="155401" stop="155339"/>
              <exon start="155256" stop="155102"/>
              <exon start="153489" stop="153376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155364" stop="155339"/>
              <exon start="155256" stop="155102"/>
              <exon start="153489" stop="153083"/>
              <exon start="152997" stop="152801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155144" stop="155102"/>
              <exon start="153489" stop="153083"/>
              <exon start="152997" stop="152599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155144" stop="155102"/>
              <exon start="153489" stop="153083"/>
              <exon start="152997" stop="152659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="153342" stop="153083"/>
              <exon start="152997" stop="152742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="153242" stop="153083"/>
              <exon start="152997" stop="152435"/>
              <exon start="152289" stop="152278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436351" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="152624" stop="152435"/>
              <exon start="152289" stop="152279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAAGTCTTTTGACACTCATAAAAGCAAACACGTT : GTGCTATATGATGATGGTGATGTAGAAGTCCTGCGATTGGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAG : GGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGA : ATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGAT : GTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG : GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTT : AGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCGACGAACCGATCCTGTGTTGCAGCTCGGTTTTTGTTGTAGTCTTGTGTCTTCATTTTGTATATTTTGTTTGTTTAGATTAGTAACAGAAGTGCGTCTGTTGTAGTTCCTCCCTCCTTCATATGATCCGCGGATTCTTGTGAACTGTAGATTTGTAAGCATTTTGTGGTGTATGGAACCAGTAACATTAGCACCCTTTTCACT : GAAAAGAGAAAA</gDNA_template>
            <first_frame> V  K  S  F  D  T  H  K  S  K  H  V  :  V  L  Y  D  D  G  D  V  E  V  L  R  L  E  K  E  C  W  E  L  V  G  G  V  Q  K  P  V  K  :  G  S  N  S  K  K  G  S  G  S  K  K  E :   S  G  E  R  K  K  R  T  L  A  A  S  R  Q  K  K  E  T  D  K  M :   S  P  L  S  P  V  R  G  K  R  T  P  R  K  N  L  K  Y  G  Q  K  G  P  S  K  S  S  L  S  R  R  S  L  L  L  G  K  P  L  I  T  S  K  S  K  A  D  N  L  S  S   : G  E  S  E  S  E  Q  K  E  S  T  H  E  F  S  L  S  E  H  E  L  S  D  K  D  D  I  A  Y  F  D  G  K  P  G  A  D  A  D  R  L  S  G  M  E  E  S  E  E  E  E  C  P  V  E  N  K  D  E  D  E  L  G  T  P  Q  D  S  R  G  S  D  R  E  I  S  S  S  H  E  K  P  H  A  D  G  S  T  E  K  S  N  D  D  A  E  R  S  D  S  H  G  S  V  R  D  D  A  D  S  H  S  T  D  Q  G  D  S  G  S  S  S  A  A  K  S  D  E  E  L  S  D  D  E  L  L  :  S  T  W  K  Q  R  A  G  K  S  A  G  G  K  *  T  S  R  K  A  I  M  *  M  T  D  D  L  *  R  C  S  I  L  E  S  K  *  H  Q  S  K  Y  R  H  P  R  K  M  I  P  L  T  V  T  L  I  S  L  *  S  T  V  Y  H  I  E  N  G  R  S  Q  V  Y  *  K  V  G  S  K  D  K  N  V  H  S  H  S  L  C  S  C  G  L  E  V  T  D  M  H  Q  *  Q  F  S  *  A  L  Y  S  S  S  V  V  S  W  H  *  L  T  R  R  T  D  P  V  L  Q  L  G  F  C  C  S  L  V  S  S  F  C  I  F  C  L  F  R  L  V  T  E  V  R  L  L  *  F  L  P  P  S  Y  D  P  R  I  L  V  N  C  R  F  V  S  I  L  W  C  M  E  P  V  T  L  A  P  F  S  L :   K  R  E   </first_frame>
            <second_frame>  S  S  L  L  T  L  I  K  A  N  T  L :   C  Y  M  M  M  V  M  *  K  S  C  D  W  K  R  S  V  G  S  L  L  V  V  C  R  N  L  *  R :   V  Q  I  P  K  R  V  Q  A  P  R  K   : N  L  E  R  G  K  K  E  L  L  L  P  P  G  K  R  R  R  P  I  R   : C  L  H  Y  R  Q  Y  E  G  R  E  L  Q  G  R  I  *  S  M  D  K  K  V  H  Q  N  L  L  *  A  E  E  A  C  F  *  A  S  R  *  *  P  Q  S  P  R  R  T  I  *  A  Q  :  V  N  Q  K  V  S  R  K  K  A  R  M  S  S  A  C  L  N  M  N  C  L  T  R  M  T  *  H  T  L  M  G  N  P  G  L  M  L  I  D  *  V  V  W  R  S  L  K  K  K  N  V  P  W  K  I  K  M  R  M  N  L  A  P  L  R  I  L  V  D  Q  T  G  R  S  L  L  H  M  R  N  H  M  Q  M  V  P  Q  R  S  Q  M  M  M  L  K  D  Q  I  L  M  G  V  *  E  M  M  Q  T  V  I  Q  L  I  K  A  T  L  E  V  A  R  L  P  N  L  M  K  N  Y  P  T  M  S  Y  L :   A  R  G  N  N  E  Q  G  S  R  L  E  G  S  K  P  A  E  R  L  S  C  E  *  L  M  I  C  S  D  A  A  S  W  R  A  S  S  I  N  P  N  T  V  I  L  G  R  *  Y  H  *  Q  *  H  *  *  V  Y  E  V  Q  F  T  T  *  K  M  V  G  H  R  F  I  K  R  *  G  A  R  T  R  M  C  I  P  I  V  C  V  A  A  V  *  R  *  L  I  C  I  N  S  S  S  L  R  H  C  T  A  L  V  *  *  V  G  I  N  L  P  D  E  P  I  L  C  C  S  S  V  F  V  V  V  L  C  L  H  F  V  Y  F  V  C  L  D  *  *  Q  K  C  V  C  C  S  S  S  L  L  H  M  I  R  G  F  L  *  T  V  D  L  *  A  F  C  G  V  W  N  Q  *  H  *  H  P  F  H   : *  K  E  K  </second_frame>
            <third_frame>   Q  V  F  *  H  S  *  K  Q  T  R   : C  A  I  *  *  W  *  C  R  S  P  A  I  G  K  G  V  L  G  A  C  W  W  C  A  E  T  C  E   : G  F  K  F  Q  K  G  F  R  L  Q  E  R  :  I  W  R  E  E  K  K  N  S  C  C  L  Q  A  K  E  G  D  R  *  D  :  V  S  I  I  A  S  T  R  E  E  N  S  K  E  E  F  E  V  W  T  K  R  S  I  K  I  F  F  E  Q  K  K  P  A  F  R  Q  A  V  D  N  L  K  V  Q  G  G  Q  F  K  L  R :   *  I  R  K  *  A  E  R  K  H  A  *  V  Q  L  V  *  T  *  T  V  *  Q  G  *  H  S  I  L  *  W  E  T  R  G  *  C  *  *  I  E  W  Y  G  G  V  *  R  R  R  M  S  R  G  K  *  R  *  G  *  T  W  H  P  S  G  F  S  W  I  R  Q  G  D  L  F  F  T  *  E  T  T  C  R  W  F  H  R  E  V  K  *  *  C  *  K  I  R  F  S  W  E  C  K  R  *  C  R  Q  S  F  N  *  S  R  R  L  W  K  *  L  G  C  Q  I  *  *  R  I  I  R  R  *  A  T   : *  H  V  E  T  T  S  R  E  V  G  W  R  E  V  N  Q  Q  K  G  Y  H  V  N  D  *  *  F  V  A  M  Q  H  P  G  E  Q  V  A  S  I  Q  I  P  S  S  *  E  D  D  T  I  N  S  N  I  N  K  F  M  K  Y  S  L  P  H  R  K  W  *  V  T  G  L  L  K  G  R  E  Q  G  Q  E  C  A  F  P  *  F  V  *  L  R  S  R  G  N  *  Y  A  S  I  A  V  L  L  G  I  V  Q  L  *  C  S  K  L  A  L  T  Y  P  T  N  R  S  C  V  A  A  R  F  L  L  *  S  C  V  F  I  L  Y  I  L  F  V  *  I  S  N  R  S  A  S  V  V  V  P  P  S  F  I  *  S  A  D  S  C  E  L  *  I  C  K  H  F  V  V  Y  G  T  S  N  I  S  T  L  F  T  :  E  K  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="156276" stop="156241"/>
                    <exon start="156114" stop="156028"/>
                    <exon start="155918" stop="155881"/>
                    <exon start="155401" stop="155339"/>
                    <exon start="155256" stop="155102"/>
                    <exon start="153489" stop="153083"/>
                    <exon start="152997" stop="152953"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKSFDTHKSKHVVLYDDGDVEVLRLEKECWELVGGVQKPVKGSNSKKGSGSKKESGERKKRTLAASRQKKETDKMSPLSPVRGKRTPRKNLKYGQKGPSKSSLSRRSLLLGKPLITSKSKADNLSSGESESEQKESTHEFSLSEHELSDKDDIAYFDGKPGADADRLSGMEESEEEECPVENKDEDELGTPQDSRGSDREISSSHEKPHADGSTEKSNDDAERSDSHGSVRDDADSHSTDQGDSGSSSAAKSDEELSDDELLSTWKQRAGKSAGGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="156276" e_stop="156241"/>
            <exon e_start="156114" e_stop="156028"/>
            <exon e_start="155918" e_stop="155881"/>
            <exon e_start="155401" e_stop="155339"/>
            <exon e_start="155256" e_stop="155102"/>
            <exon e_start="153489" e_stop="153083"/>
            <exon e_start="152997" e_stop="152405"/>
            <exon e_start="152289" e_stop="152278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="0.972"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.977"/>
          <exon-intron don_prob="0.983" acc_prob="0.684" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.388" e_score="1.000"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="156276" e_stop="156241" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="156240" i_stop="156115" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="156114" e_stop="156028" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="156027" i_stop="155919" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="155918" e_stop="155881" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.684">
            <gDNA_intron_boundary i_start="155880" i_stop="155402" i_length="479"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="155401" e_stop="155339" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="155338" i_stop="155257" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="155256" e_stop="155102" e_length="155"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="155101" i_stop="153490" i_length="1612"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="153489" e_stop="153083" e_length="407"/>
          </exon>
          <intron i_serial="6" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="153082" i_stop="152998" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="152997" e_stop="152405" e_length="593"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.388">
            <gDNA_intron_boundary i_start="152404" i_stop="152290" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="0.833">
            <gDNA_exon_boundary e_start="152289" e_stop="152278" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156276" stop="156241"/>
              <exon start="156114" stop="156028"/>
              <exon start="155918" stop="155881"/>
              <exon start="155401" stop="155339"/>
              <exon start="155256" stop="155102"/>
              <exon start="153489" stop="153203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156276" stop="156241"/>
              <exon start="156114" stop="156028"/>
              <exon start="155918" stop="155881"/>
              <exon start="155401" stop="155339"/>
              <exon start="155256" stop="155102"/>
              <exon start="153489" stop="153279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156077" stop="156028"/>
              <exon start="155918" stop="155881"/>
              <exon start="155401" stop="155339"/>
              <exon start="155256" stop="155102"/>
              <exon start="153489" stop="153083"/>
              <exon start="152997" stop="152966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156076" stop="156028"/>
              <exon start="155918" stop="155881"/>
              <exon start="155401" stop="155339"/>
              <exon start="155256" stop="155102"/>
              <exon start="153489" stop="153237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156076" stop="156028"/>
              <exon start="155918" stop="155881"/>
              <exon start="155401" stop="155339"/>
              <exon start="155256" stop="155102"/>
              <exon start="153489" stop="153376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155364" stop="155339"/>
              <exon start="155256" stop="155102"/>
              <exon start="153489" stop="153083"/>
              <exon start="152997" stop="152801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155144" stop="155102"/>
              <exon start="153489" stop="153083"/>
              <exon start="152997" stop="152599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155144" stop="155102"/>
              <exon start="153489" stop="153083"/>
              <exon start="152997" stop="152659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="153342" stop="153083"/>
              <exon start="152997" stop="152742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="153322" stop="153083"/>
              <exon start="152997" stop="152405"/>
              <exon start="152289" stop="152278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAAGTCTTTTGACACTCATAAAAGCAAACACGTT : GTGCTATATGATGATGGTGATGTAGAAGTCCTGCGATTGGAAAAGGAGTGTTGGGAGCTTGTTGGTGGTGTGCAGAAACCTGTGAAG : GGTTCAAATTCCAAAAAGGGTTCAGGCTCCAAGAAAGA : ATCTGGAGAGAGGAAAAAAAGAACTCTTGCTGCCTCCAGGCAAAAGAAGGAGACCGATAAGAT : GTCTCCATTATCGCCAGTACGAGGGAAGAGAACTCCAAGGAAGAATTTGAAGTATGGACAAAAAGGTCCATCAAAATCTTCTTTGAGCAGAAGAAGCCTGCTTTTAGGCAAGCCGTTGATAACCTCAAAGTCCAAGGCGGACAATTTAAGCTCAG : GTGAATCAGAAAGTGAGCAGAAAGAAAGCACGCATGAGTTCAGCTTGTCTGAACATGAACTGTCTGACAAGGATGACATAGCATACTTTGATGGGAAACCCGGGGCTGATGCTGATAGATTGAGTGGTATGGAGGAGTCTGAAGAAGAAGAATGTCCCGTGGAAAATAAAGATGAGGATGAACTTGGCACCCCTCAGGATTCTCGTGGATCAGACAGGGAGATCTCTTCTTCACATGAGAAACCACATGCAGATGGTTCCACAGAGAAGTCAAATGATGATGCTGAAAGATCAGATTCTCATGGGAGTGTAAGAGATGATGCAGACAGTCATTCAACTGATCAAGGCGACTCTGGAAGTAGCTCGGCTGCCAAATCTGATGAAGAATTATCCGACGATGAGCTACTT : AGCACGTGGAAACAACGAGCAGGGAAGTCGGCTGGAGGGAAGTAAACCAGCAGAAAGGCTATCATGTGAATGACTGATGATTTGTAGCGATGCAGCATCCTGGAGAGCAAGTAGCATCAATCCAAATACCGTCATCCTAGGAAGATGATACCATTAACAGTAACATTAATAAGTTTATGAAGTACAGTTTACCACATAGAAAATGGTAGGTCACAGGTTTATTAAAAGGTAGGGAGCAAGGACAAGAATGTGCATTCCCATAGTTTGTGTAGCTGCGGTCTAGAGGTAACTGATATGCATCAATAGCAGTTCTCTTAGGCATTGTACAGCTCTAGTGTAGTAAGTTGGCATTAACTTACCCGACGAACCGATCCTGTGTTGCAGCTCGGTTTTTGTTGTAGTCTTGTGTCTTCATTTTGTATATTTTGTTTGTTTAGATTAGTAACAGAAGTGCGTCTGTTGTAGTTCCTCCCTCCTTCATATGATCCGCGGATTCTTGTGAACTGTAGATTTGTAAGCATTTTGTGGTGTATGGAACCAGTAACATTAGCACCCTTTTCACTTCTTTTTTGCTTCTAATTCTCAATATTTGT : GAAAAGAGAAAA</gDNA_template>
            <first_frame> V  K  S  F  D  T  H  K  S  K  H  V  :  V  L  Y  D  D  G  D  V  E  V  L  R  L  E  K  E  C  W  E  L  V  G  G  V  Q  K  P  V  K  :  G  S  N  S  K  K  G  S  G  S  K  K  E :   S  G  E  R  K  K  R  T  L  A  A  S  R  Q  K  K  E  T  D  K  M :   S  P  L  S  P  V  R  G  K  R  T  P  R  K  N  L  K  Y  G  Q  K  G  P  S  K  S  S  L  S  R  R  S  L  L  L  G  K  P  L  I  T  S  K  S  K  A  D  N  L  S  S   : G  E  S  E  S  E  Q  K  E  S  T  H  E  F  S  L  S  E  H  E  L  S  D  K  D  D  I  A  Y  F  D  G  K  P  G  A  D  A  D  R  L  S  G  M  E  E  S  E  E  E  E  C  P  V  E  N  K  D  E  D  E  L  G  T  P  Q  D  S  R  G  S  D  R  E  I  S  S  S  H  E  K  P  H  A  D  G  S  T  E  K  S  N  D  D  A  E  R  S  D  S  H  G  S  V  R  D  D  A  D  S  H  S  T  D  Q  G  D  S  G  S  S  S  A  A  K  S  D  E  E  L  S  D  D  E  L  L  :  S  T  W  K  Q  R  A  G  K  S  A  G  G  K  *  T  S  R  K  A  I  M  *  M  T  D  D  L  *  R  C  S  I  L  E  S  K  *  H  Q  S  K  Y  R  H  P  R  K  M  I  P  L  T  V  T  L  I  S  L  *  S  T  V  Y  H  I  E  N  G  R  S  Q  V  Y  *  K  V  G  S  K  D  K  N  V  H  S  H  S  L  C  S  C  G  L  E  V  T  D  M  H  Q  *  Q  F  S  *  A  L  Y  S  S  S  V  V  S  W  H  *  L  T  R  R  T  D  P  V  L  Q  L  G  F  C  C  S  L  V  S  S  F  C  I  F  C  L  F  R  L  V  T  E  V  R  L  L  *  F  L  P  P  S  Y  D  P  R  I  L  V  N  C  R  F  V  S  I  L  W  C  M  E  P  V  T  L  A  P  F  S  L  L  F  C  F  *  F  S  I  F  V :   K  R  E   </first_frame>
            <second_frame>  S  S  L  L  T  L  I  K  A  N  T  L :   C  Y  M  M  M  V  M  *  K  S  C  D  W  K  R  S  V  G  S  L  L  V  V  C  R  N  L  *  R :   V  Q  I  P  K  R  V  Q  A  P  R  K   : N  L  E  R  G  K  K  E  L  L  L  P  P  G  K  R  R  R  P  I  R   : C  L  H  Y  R  Q  Y  E  G  R  E  L  Q  G  R  I  *  S  M  D  K  K  V  H  Q  N  L  L  *  A  E  E  A  C  F  *  A  S  R  *  *  P  Q  S  P  R  R  T  I  *  A  Q  :  V  N  Q  K  V  S  R  K  K  A  R  M  S  S  A  C  L  N  M  N  C  L  T  R  M  T  *  H  T  L  M  G  N  P  G  L  M  L  I  D  *  V  V  W  R  S  L  K  K  K  N  V  P  W  K  I  K  M  R  M  N  L  A  P  L  R  I  L  V  D  Q  T  G  R  S  L  L  H  M  R  N  H  M  Q  M  V  P  Q  R  S  Q  M  M  M  L  K  D  Q  I  L  M  G  V  *  E  M  M  Q  T  V  I  Q  L  I  K  A  T  L  E  V  A  R  L  P  N  L  M  K  N  Y  P  T  M  S  Y  L :   A  R  G  N  N  E  Q  G  S  R  L  E  G  S  K  P  A  E  R  L  S  C  E  *  L  M  I  C  S  D  A  A  S  W  R  A  S  S  I  N  P  N  T  V  I  L  G  R  *  Y  H  *  Q  *  H  *  *  V  Y  E  V  Q  F  T  T  *  K  M  V  G  H  R  F  I  K  R  *  G  A  R  T  R  M  C  I  P  I  V  C  V  A  A  V  *  R  *  L  I  C  I  N  S  S  S  L  R  H  C  T  A  L  V  *  *  V  G  I  N  L  P  D  E  P  I  L  C  C  S  S  V  F  V  V  V  L  C  L  H  F  V  Y  F  V  C  L  D  *  *  Q  K  C  V  C  C  S  S  S  L  L  H  M  I  R  G  F  L  *  T  V  D  L  *  A  F  C  G  V  W  N  Q  *  H  *  H  P  F  H  F  F  F  A  S  N  S  Q  Y  L   : *  K  E  K  </second_frame>
            <third_frame>   Q  V  F  *  H  S  *  K  Q  T  R   : C  A  I  *  *  W  *  C  R  S  P  A  I  G  K  G  V  L  G  A  C  W  W  C  A  E  T  C  E   : G  F  K  F  Q  K  G  F  R  L  Q  E  R  :  I  W  R  E  E  K  K  N  S  C  C  L  Q  A  K  E  G  D  R  *  D  :  V  S  I  I  A  S  T  R  E  E  N  S  K  E  E  F  E  V  W  T  K  R  S  I  K  I  F  F  E  Q  K  K  P  A  F  R  Q  A  V  D  N  L  K  V  Q  G  G  Q  F  K  L  R :   *  I  R  K  *  A  E  R  K  H  A  *  V  Q  L  V  *  T  *  T  V  *  Q  G  *  H  S  I  L  *  W  E  T  R  G  *  C  *  *  I  E  W  Y  G  G  V  *  R  R  R  M  S  R  G  K  *  R  *  G  *  T  W  H  P  S  G  F  S  W  I  R  Q  G  D  L  F  F  T  *  E  T  T  C  R  W  F  H  R  E  V  K  *  *  C  *  K  I  R  F  S  W  E  C  K  R  *  C  R  Q  S  F  N  *  S  R  R  L  W  K  *  L  G  C  Q  I  *  *  R  I  I  R  R  *  A  T   : *  H  V  E  T  T  S  R  E  V  G  W  R  E  V  N  Q  Q  K  G  Y  H  V  N  D  *  *  F  V  A  M  Q  H  P  G  E  Q  V  A  S  I  Q  I  P  S  S  *  E  D  D  T  I  N  S  N  I  N  K  F  M  K  Y  S  L  P  H  R  K  W  *  V  T  G  L  L  K  G  R  E  Q  G  Q  E  C  A  F  P  *  F  V  *  L  R  S  R  G  N  *  Y  A  S  I  A  V  L  L  G  I  V  Q  L  *  C  S  K  L  A  L  T  Y  P  T  N  R  S  C  V  A  A  R  F  L  L  *  S  C  V  F  I  L  Y  I  L  F  V  *  I  S  N  R  S  A  S  V  V  V  P  P  S  F  I  *  S  A  D  S  C  E  L  *  I  C  K  H  F  V  V  Y  G  T  S  N  I  S  T  L  F  T  S  F  L  L  L  I  L  N  I  C  :  E  K  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="156276" stop="156241"/>
                    <exon start="156114" stop="156028"/>
                    <exon start="155918" stop="155881"/>
                    <exon start="155401" stop="155339"/>
                    <exon start="155256" stop="155102"/>
                    <exon start="153489" stop="153083"/>
                    <exon start="152997" stop="152953"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKSFDTHKSKHVVLYDDGDVEVLRLEKECWELVGGVQKPVKGSNSKKGSGSKKESGERKKRTLAASRQKKETDKMSPLSPVRGKRTPRKNLKYGQKGPSKSSLSRRSLLLGKPLITSKSKADNLSSGESESEQKESTHEFSLSEHELSDKDDIAYFDGKPGADADRLSGMEESEEEECPVENKDEDELGTPQDSRGSDREISSSHEKPHADGSTEKSNDDAERSDSHGSVRDDADSHSTDQGDSGSSSAAKSDEELSDDELLSTWKQRAGKSAGGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 387 chains have been computed
$ 
$ memory statistics:
$ 2434024 bytes spliced alignments in total
$ 187 spliced alignments have been stored
$ 13016 bytes was the average size of a spliced alignment
$ 40512 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1841 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 454 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:50:10
-->
