<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 06:13:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339474" ref_strand="+" ref_description="SGN-U339474        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tttttttttttagcaatatataactcatattataacaagtttcaaaattttccaacaatttggtacaagaggttatatattgatttttttcaagaaaaaaaaaacgatcggggtaggtatagggggaggggattacatatcaatgtggagaatcgaaaccatatgatgcgaggtaagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="7151" stop="7922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7443" g_stop="7622" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-U339474" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7443" e_stop="7622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGACTTTAGCAATATATAACTCATATTATAACAAGTTTCAAAATTTTCCAACAATTTGGTACAAGAGGTTATATATTGATTTTTTTCAAGAAAAAAAAAACGATCGGGGTAGGTATAGGGGGAGGGGATTACATAACAATGTGGAGAATCGAAACGATATGATGCGAGTTCAGATA</genome_strand>
        <mrna_strand>TTTTTTTTTTTAGCAATATATAACTCATATTATAACAAGTTTCAAAATTTTCCAACAATTTGGTACAAGAGGTTATATATTGATTTTTTTCAAGAAAAAAAAAACGATCGGGGTAGGTATAGGGGGAGGGGATTACATATCAATGTGGAGAATCGAAACCATATGATGCGAGGTAAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328806" ref_strand="+" ref_description="SGN-U328806        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase | chr5:3032376-3034544 FORWARD | Aliases: F17I14.50, F17I14_50(evalue: 8e-128, score=452) genbank/nr: gi|72384433|gb|AAZ67549.1| 52O08_4 [Brassica rapa subsp. pekinensis] (evalue: 5e-126, score=453)">
      <seq>aaggaaggaggatgtgactataagacggtgcaggaggcggtgaatgctgcaccggagaaggagcaaacccggaagtttgtgatatggatcaaatccgggttgtatgaggagaaggttcgggtcgggttggagaagatgaatgtggtgtttttgggtgatggaatgggtaaaactgtcattacgggttcgttgagtgttggtcttgctggtgttactacttatgagactgcaactgttggagttgttggtgatggattcatggctagtggtatcaccttccaaaacacagccggtccggatgctcaccaagccgtagcattccgatccgacagtgatctttccgctgtagaaaactgtgaattcattggcaatcaagacaccctatacgcccacgctttgcgccaatactacaagtcctgccgtatccaaggtaatgtagacttcattttcggaaactcagcttctttctttcaagactgtgacatcctaatagcacctcgacaactccgtcctgaaaagggagagacgaatgctgtgactgctcatggcaggatagaccctgcacaatcaactggtttcgtcttccaaaattgtttgatcaatggaactgataaatacatgaccttgtactacaacaaacccaaagtccacaaaaattttctgggaagaccatggaaggagtattctcggaccgtgtttctagattgtactttagaggctcttatatcgcctaacggatggttgccttggagtggtgatttcgcgttgaagactctatactacggagaatatagaaatactggtgccggagctaatacagcaggacgagtgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="9485" stop="7487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9185" g_stop="8948" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8947" i_stop="8384" i_length="564">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8383" g_stop="7787" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="835" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U328806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9185" e_stop="8948"/>
          <exon e_start="8383" e_stop="7787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGGAGGATGTGACTATAAGACGGTGCAGGAGGCGGTGAATGCTGCACCGGAGAAGGAGCAAACCCGGAAGTTTGTGATATGGATCAAATCCGGGTTGTATGAGGAGAAGGTTCGGGTCGGGTTGGAGAAGATGAATGTGGTGTTTTTGGGTGATGGAATGGGTAAAACTGTCATTACGGGTTCGTTGAGTGTTGGTCTTGCTGGTGTTACTACTTATGAGACTGCAACTGTTGGTAAGTTTATTTGATTGAATTTGAATTTTAATACTTATGTTATGTTTATTACTATCTTATTCGTTATCATTACCTATGTTTACTTCATTTAGCATATTAGTATTTGTTATTGAACCTGTTATATGTTTTACCTTAGTCGAGGGTCTCGAGGAAACAATCCACATCAATCCCACTTGTATGGAATTACACTGATCATTGAGTAATATGACACCGTGCATTCATTACAAACCGTGGGATTGATTTTTCGTATGAAAAACGGAAGGCATAGTCCTTGCTCCATAGAAAACGCTAAGTTAGAATTTATTGTCGATGGGTTTGGAATGAGTATAATCTATACACATGTATACAATGAGCATTAACTTTGTGGTATGCGTATCCATAGATGGAGCGAAAAGCAATGGGCCTAGTGAACCTTTTTTGATCCGTCTCGGGATCATAGGGGTCTGTTAGAAGTGCAAAATGTTTGCATTTGTCATAAAACCTGCATTTGCTATTTGTTGTTGAAGACATACGGAGGACGTTTGTAGATTCGAGTCGTTCTAATGTTTAGTATTTGTAAAACAGGAGTTGTTGGTGATGGATTCATGGCTAGTGGTATCACCTTCCAAAACACAGCCGGTCCGGATGCTCACCAAGCCGTAGCATTCCGATCCGACAGTGATCTTTCCGCTGTAGAAAACTGTGAATTCATTGGCAATCAAGACACCCTATACGCCCACGCTTTGCGCCAATACTACAAGTCCTGCCGTATCCAAGGTAATGTAGACTTCATTTTCGGAAACTCAGCTTCTTTCTTTCAAGACTGTGACATCCTAATAGCACCTCGACAACTCCGTCCTGAAAAGGGAGAGACGAATGCTGTGACTGCTCATGGCAGGATAGACCCTGCACAATCAACTGGTTTCGTCTTCCAAAATTGTTTGATCAATGGAACTGATAAATACATGACCTTGTACTACAACAAACCCAAAGTCCACAAAAATTTTCTGGGAAGACCATGGAAGGAGTATTCTCGGACCGTGTTTCTAGATTGTACTTTAGAGGCTCTTATATCGCCTAACGGATGGTTGCCTTGGAGTGGTGATTTCGCGTTGAAGACTCTATACTACGGAGAATATAGAAATACTGGTGCCGGAGCTAATACAGCAGGACGAGTGTCGT</genome_strand>
        <mrna_strand>AAGGAAGGAGGATGTGACTATAAGACGGTGCAGGAGGCGGTGAATGCTGCACCGGAGAAGGAGCAAACCCGGAAGTTTGTGATATGGATCAAATCCGGGTTGTATGAGGAGAAGGTTCGGGTCGGGTTGGAGAAGATGAATGTGGTGTTTTTGGGTGATGGAATGGGTAAAACTGTCATTACGGGTTCGTTGAGTGTTGGTCTTGCTGGTGTTACTACTTATGAGACTGCAACTGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTGGTGATGGATTCATGGCTAGTGGTATCACCTTCCAAAACACAGCCGGTCCGGATGCTCACCAAGCCGTAGCATTCCGATCCGACAGTGATCTTTCCGCTGTAGAAAACTGTGAATTCATTGGCAATCAAGACACCCTATACGCCCACGCTTTGCGCCAATACTACAAGTCCTGCCGTATCCAAGGTAATGTAGACTTCATTTTCGGAAACTCAGCTTCTTTCTTTCAAGACTGTGACATCCTAATAGCACCTCGACAACTCCGTCCTGAAAAGGGAGAGACGAATGCTGTGACTGCTCATGGCAGGATAGACCCTGCACAATCAACTGGTTTCGTCTTCCAAAATTGTTTGATCAATGGAACTGATAAATACATGACCTTGTACTACAACAAACCCAAAGTCCACAAAAATTTTCTGGGAAGACCATGGAAGGAGTATTCTCGGACCGTGTTTCTAGATTGTACTTTAGAGGCTCTTATATCGCCTAACGGATGGTTGCCTTGGAGTGGTGATTTCGCGTTGAAGACTCTATACTACGGAGAATATAGAAATACTGGTGCCGGAGCTAATACAGCAGGACGAGTGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343677" ref_strand="+" ref_description="SGN-U343677        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase | chr5:3032376-3034544 FORWARD | Aliases: F17I14.50, F17I14_50(evalue: 8e-54, score=207) genbank/nr: gi|9759007|dbj|BAB09534.1| pectin methylesterase-like protein [Arabidopsis thaliana](evalue: 2e-52, score=209)">
      <seq>tattccgaaaatttaagcttctgttcatttccatggcttcctttttcacactcactatcttctccttaatcctcttcttctctatttcctccgccgctcgccaccattcctccacatccccgtcaatttcacttcagatccgtggtgcttgtaaggcttcacgggacccaccaacatgtgaatctgtattgacggattccggttacttaccgtctgagctaacgacgtcgttgatcatccaatcggctgttaaagtatcatcgaagaacaacgataaggcgaaagagatggtgcaggcaattatagatgcgtcgacagggaataatcagaaccgtacggacgctgggaaagtgtgtatggaggtgctcgggtatgcggagtatcgggtcgggttaacgggtcaggcagtgattaacggcggatacaagagcgctcgtgcatggatgagctccgttatggtgtatcaatacgactgctggtccgctttgaagtacgttaatggcacctcccaggtatctaaaacgatgtcgtttatcaattccttgatcggatacagcagcaatgcattggggatgatggtgaatttcgacctttacggtgctgataccgggtcatggaccgtacccaaaacagaacgagacgggttctgggaaggttcgggttcgggttcaagcgggtcgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="10219" stop="8937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9919" g_stop="9237" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U343677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9919" e_stop="9237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCCGAAAATTTAAGCTTCTGTTCATTTCCATGGCTTCCTTTTTCACACTCACTATCTTCTCCTTAATCCTCTTCTTCTCTATTTCCTCCGCCGCTCGCCACCATTCCTCCACATCCCCGTCAATTTCACTTCAGATCCGTGGTGCTTGTAAGGCTTCACGGGACCCACCAACATGTGAATCTGTATTGACGGATTCCGGTTACTTACCGTCTGAGCTAACGACGTCGTTGATCATCCAATCGGCTGTTAAAGTATCATCGAAGAACAACGATAAGGCGAAAGAGATGGTGCAGGCAATTATAGATGCGTCGACAGGGAATAATCAGAACCGTACGGACGCTGGGAAAGTGTGTATGGAGGTGCTCGGGTATGCGGAGTATCGGGTCGGGTTAACGGGTCAGGCAGTGATTAACGGCGGATACAAGAGCGCTCGTGCATGGATGAGCTCCGTTATGGTGTATCAATACGACTGCTGGTCCGCTTTGAAGTACGTTAATGGCACCTCCCAGGTATCTAAAACGATGTCGTTTATCAATTCCTTGATCGGATACAGCAGCAATGCATTGGGGATGATGGTGAATTTCGACCTTTACGGTGCTGATACCGGGTCATGGACCGTACCCAAAACAGAACGAGACGGGTTCTGGGAAGGTTCGGGTTCGGGTTCAAGCGGGTCGGGT</genome_strand>
        <mrna_strand>TATTCCGAAAATTTAAGCTTCTGTTCATTTCCATGGCTTCCTTTTTCACACTCACTATCTTCTCCTTAATCCTCTTCTTCTCTATTTCCTCCGCCGCTCGCCACCATTCCTCCACATCCCCGTCAATTTCACTTCAGATCCGTGGTGCTTGTAAGGCTTCACGGGACCCACCAACATGTGAATCTGTATTGACGGATTCCGGTTACTTACCGTCTGAGCTAACGACGTCGTTGATCATCCAATCGGCTGTTAAAGTATCATCGAAGAACAACGATAAGGCGAAAGAGATGGTGCAGGCAATTATAGATGCGTCGACAGGGAATAATCAGAACCGTACGGACGCTGGGAAAGTGTGTATGGAGGTGCTCGGGTATGCGGAGTATCGGGTCGGGTTAACGGGTCAGGCAGTGATTAACGGCGGATACAAGAGCGCTCGTGCATGGATGAGCTCCGTTATGGTGTATCAATACGACTGCTGGTCCGCTTTGAAGTACGTTAATGGCACCTCCCAGGTATCTAAAACGATGTCGTTTATCAATTCCTTGATCGGATACAGCAGCAATGCATTGGGGATGATGGTGAATTTCGACCTTTACGGTGCTGATACCGGGTCATGGACCGTACCCAAAACAGAACGAGACGGGTTCTGGGAAGGTTCGGGTTCGGGTTCAAGCGGGTCGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343723" ref_strand="+" ref_description="SGN-U343723        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G09750.1 | Symbol: None | basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain | chr5:3026402-3027076 REVERSE | Aliases: F17I14.60, F17I14_60 (evalue: 2e-40, score=162) genbank/nr: gi|15242494|ref|NP_196537.1| bHLH protein family [Arabidopsis thaliana] gi|11357510|pir||T49923 hypothetical protein F17I14.60 - Arabidopsis thaliana gi|7671414|emb|CAB89355.1| putative protein [Arabidopsis thaliana] gi|9759006|dbj|BAB09533.1| gene_id:MTH16.21~pir||T01340~similar to unknown protein [Arabidopsis thaliana](evalue: 2e-38, score=162)">
      <seq>ctatttggcctagttttcctcttcaaaaccctcaacaccatcaccttccctcctcctcaacccaacaacaacaacaacaacaagaagaagtagtagttgtcccttttgatcatgtgttaaacaaccatgttcaaaccctaatagaggatcaagaacacgatgatcaagacgaagatgaagaggaagaagaagagctaggagccatgaaagaaatgatgttcaaaattgcatctatgcaaccagtagacattgatccatccactatacgaaaacctaaaaggcgtaacgtacgtataagcaatgatccacaaagcgtagcagccaggctacgccgcgaaaggataagtgaaaaaatcagaatcttgcaaagattagtccctggtggaacaaaaatggacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="39996" stop="40996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40296" g_stop="40696" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-U343723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40296" e_stop="40696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTGGCCTAGTTTTCCTCTTCAAAACCCTCAACACCATCACCTTCCCTCCTCCTCAACCCAACAACAACAACAACAACAAGAAGAAGTAGTAGTTGTCCCTTTTGATCATGTGTTAAACAACCATGTTCAAACCCTAATAGAGGATCAAGAACACGATGATCAAGACGAAGATGAAGAGGAAGAAGAAGAGCTAGGAGCCATGAAAGAAATGATGTTCAAAATTGCATCTATGCAACCAGTAGACATTGATCCATCCACTATACGAAAACCTAAAAGGCGTAACGTACGTATAAGCAATGATCCACAAAGCGTAGCAGCCAGGCTACGCCGCGAAAGGATAAGTGAAAAAATCAGAATCTTGCAAAGATTAGTCCCTGGTGGAACAAAAATGGACACT</genome_strand>
        <mrna_strand>CTATTTGGCCTAGTTTTCCTCTTCAAAACCCTCAACACCATCACCTTCCCTCCTCCTCAACCCAACAACAACAACAACAACAAGAAGAAGTAGTAGTTGTCCCTTTTGATCATGTGTTAAACAACCATGTTCAAACCCTAATAGAGGATCAAGAACACGATGATCAAGACGAAGATGAAGAGGAAGAAGAAGAGCTAGGAGCCATGAAAGAAATGATGTTCAAAATTGCATCTATGCAACCAGTAGACATTGATCCATCCACTATACGAAAACCTAAAAGGCGTAACGTACGTATAAGCAATGATCCACAAAGCGTAGCAGCCAGGCTACGCCGCGAAAGGATAAGTGAAAAAATCAGAATCTTGCAAAGATTAGTCCCTGGTGGAACAAAAATGGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328492" ref_strand="+" ref_description="SGN-U328492        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | transducin family protein / WD-40 repeat family protein, Similar to (SP:Q13112) Chromatin assembly factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) (Homo sapiens) | chr5:25850455-25853610 FORWARD | Aliases: None(evalue: 3e-91, score=331) genbank/nr: gi|18424846|ref|NP_568990.1| transducin / WD-40 repeat protein family [Arabidopsis thaliana] gi|14030689|gb|AAK53019.1| AT5g64630/MUB3_15 [Arabidopsis thaliana] gi|18491113|gb|AAL69523.1| AT5g64630/MUB3_15 [Arabidopsis thaliana](evalue: 2e-89, score=331)">
      <seq>caaccaaaatcaccatttctctaaaccctattttcttcttcttctcttgcatttttccaaaatctcaaaaattagtaagaagagagatcaggaagcaacaaataaggatgaagggtggtacagttcagatcaattggcacgacagtaagccagttttgtgccttgattttcaccacctcaccggcgttattgctactggtggcgccgactatgatatcaagatgtgggtgattgattctgaagaaaatgaaaagaaagcgccttcagttacataccaggctagcctttcttaccatagtggtgctgtgaatgctcttcggttctccccttcaggagagcatttggcctctggtgccgatggcggcgagctcatcatttggaagctacattcttcagatgacagcaaaacatggaaagtcctaaagacgttatcatttcaccggaaggatgtattggacttgcagtggtctgctgatggttcttttttaatttctggttctgttgataattcatgcatcgtatgggatgtcaacaaaggttctgttcatcagattttggatgctcatttgcactatgtgcaaggtgtggcatgggatccattgtccaagtatactgcctcactcagttcagatagatcttgccggatttacagcaatagaccatctaaaacaaaaggagttgagaagttgaattttgtgtgtcaacatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="56735" stop="52068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56435" g_stop="56216" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56215" i_stop="54877" i_length="1339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54876" g_stop="54765" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="333" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54764" i_stop="53681" i_length="1084">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53680" g_stop="53654" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="360" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53653" i_stop="53574" i_length="80">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53573" g_stop="53501" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="433" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53500" i_stop="52730" i_length="771">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52729" g_stop="52626" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="537" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52625" i_stop="52542" i_length="84">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.230" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52541" g_stop="52368" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="711" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U328492" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56435" e_stop="56216"/>
          <exon e_start="54876" e_stop="54765"/>
          <exon e_start="53680" e_stop="53654"/>
          <exon e_start="53573" e_stop="53501"/>
          <exon e_start="52729" e_stop="52626"/>
          <exon e_start="52541" e_stop="52368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAA-CAAAATCACCATTTCTCTAAACCCTATTTTCTTCTTCTTCTCTTGCATTTTTCCAAAATCTCAAAAATTAGTAAGAAGAGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAGGTTAAAAATTACGATTTTACCCTTTTGAGCCTTGTGTTTCTTAAGTTGGTTTGTCTTATATGCTTCGATTATGCTAATGCTGGATATTGGTTTTAATAATTTTAGTTGGTTAGTCGGATGATATCAACTTTTCATTAATTGATTAATTAATAGTTTGAACTTGGTTTTTGTTTATTGGGTATTGAGATTTTAAGTTGGTGTAAGAATGTTTCAAATTCAAAGGAAATGAAAACACAGTAGAGGGAAATGAAGAGGAAATCTGCATTTTTGTTAGTTAGTTAATAGTTTGAATTTAGTTTTTGTCAACTCGGTAATGCGATTGGAAGATAGTGTAAGAAATTTTGCAGTTCAAAGGAAATGGCAACACAGTAAAAGGGGGAAATGAAGAAGAAAATAGGAAAGAGGGATGTGAAGAAATAACAAAAATTCTAGAAGCGGAAAAGAGGATTTTTTTCTCCATTATGTCCTCGTTTTCTTTGAGCGAATGGGAGGAAATGTGTTTACCATGATTGCATAGATAGCAACAATATGCCGGTACATTTGAATTATTTAGAACAGGGGTGCACATCCCAATTGAATAGTAAAAGACATAGAAAGGGAAAGAGAGGAGCAAAATCTCATTCACTTTCTTAGTATGGTCTCAATTGGCCCAGAAAGGTAACCAAGAGTTGACACTTCAGACACAGGTTTATAATCATCTTCCTTGCAGGACAATATAAATGTTGGGTATGCATATGATTCCATATTCTCAACATGTGATATTCTTACCAATTGAGGATTTGTCATTTCAATGGGTGCCCACATTAGTAGAATTACAGAACTAGGTATGAATTTTAGTGTTTTCTTTACTGGACCAGATTCACCATCCAGTTAACCAAGCAACTAAACTCAGGAGTTTCATGATCCCCTTACCTCTGACCCAAAAAACTCAACTTTATTGATTTAATTCATAATGACTGAGTAGGAGGATGTTTATGCTTGTGATTTGTTTCTCTGCAACCTTGAACTATAAGCCGGTTAGTGATGGTGGCCTAATAGCTAATGCAAACTCTTAAAACCTATCCGGTTCTTCTAACTCAACAGAATAAATCACATTTAATATAGATTGTGTTAGTGTCTGAAATCTTACCATCTACTTGAACTTGTTTACTTCAACTTCAACCTGAAGTAACTCTTGCTTGACGAGTGTGAATTCTTTTGCTTCAGATTGCAAAGTCCTTGCATGTTGACATATTAATCACTGGTCTCAAAGTTTGCTGATATTTTTAAAGGACTTCCATATTATTATTTTATGCTTGGGATGAAATATATAACATCTGGTTCAAAATAAATTCAACAGATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAGGTGAAGTTGTTCATCTTGCTTTATTAAAAGATTCTGGTAGCTAATCACTGAAAGCATTAATTTTACAAAGGCAAGAATTGGTACATTTTTATATCCTGTCGAGTGTTGGAGTTTCATCTGAAGCTGCAGGTTGTTTTGTGCAGTTTATGAATATGGTTGTTTGACTGACTTGGCTTTCTTCTCTCTGTATCTGTATACCTCCCTGAAGAAAAATGTAATATTGGTTTTAGAGAGGGTCAGCGTTGGTAATGTTATTGCTAACTTTACTAAGTTGCAATTAGCTGTACATTTGGTTAAAAAAATTCCGTTTTTTCTTTCAATTTTTACCTTGTTTGAAATAGACTTGTAGGCTTTCATGTTAGTTTCAGTCTTTCAGAAAGCTGATGGCCTGTTAACCAATTTCTTGAAATAATAACGCTGTGAGAAGAATCGTTTCCTGGTGGACTATGTATTGCTTTAAACATTAATATTAGAAAGTTGGAATATCAGTTGTAGATATTCTATTAGCTTGAGTGATTCTCTGGGATTGCTATAGGTTATGAAATTCCTGCAGAATCTTTTTGCTGGATCTGTATTTTTGAGCACTTGTTGATCTGAGAACTAGAGATACAGAGTGGAGTCGGAGCCTCTTTCGTAGTCAGATTTGTTAGATAGTGAGTTGCAATGACATTCACGAAATCATCATTACCTTTGACTATGCAGAGAAGGTTGCTCGTACAGTCTTACTATAAATGAAATAACAGAAGATAACAATGTTTCTCTCAGTATTTGTAGCATTTGATTCAACATGTCTGAAGCACAACTTGATGGAGAATCACGGTGATAGTCTTTTGGGGTTTTTACTTGCTTCTAGGTCTATGCCATCTTACAAGCCTCACTTCTCTGGGTTGATCAATACATTGGAAATGTTAATATGTAACTGTGGTTACTTCATTTTTAGCTACCTTTTCATTTATCAAAACTTCTATTATTACTGAACTTCCAGTGTATGCCTCCATCTGATTTCTTAAACTGTTTGATGTTATACTTGTACCTATCTAGTCAGCCAGCAAACTGAATTATCATTTTTTTTGGTAATATGCAGGAGAGCATTTGGCCTCTGGTGCCGATGGTATAGACTTGTCCCTCTAAATCTCTTAATTTAGTCTGGATCAAATAATTTAACAATATCTACAACTGCTCCTGATGTAGGCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAAGTCCTAAAGACGTTATCGTAAGCCTTTCATTTGGTCTTATCGCCTTTGTGAATTTCTAAGCACTCATAAAATAGCCGCAATCGCTCCATGGAACATTAGCTACTGCTTTTGTTTTATTCTTATGGAAAGCCAGAGAATTATTAGAACACACTGTTTGGGAATGTCCTGCATTTTTCATTGTGATCTTTATCCTTTTTCTCTTGTTAAATAAATTTTTAAATCTGATGTAGGAAGAAAGGAAAAGTTATAGTTGGCATTTCAGTAGCGGACTTAAGTTAGTGGATGCAGTTGGTGGAAGAGGGTTTTGCTTTCGGGATTATAGGATATTATAACCACATGAAATAGTTGAAGTGTATGATAACACAGCGTTGATTATAGAAAAAGCAAGTCATGTTGATTATATTCTTTCATTTTTTTAATAAAATAAAGTAAATTAACATGATCATATTCTAAGTGTCTATTTGTTTGGATTGTATTTTGGTTTAAGCAGAATGTTGCAATAAACCAGCATATTTATAATAATCCCTAGTTTTGCAGGGAAAAGCAGCTTTGTGTTAATAACATTTAGCAAGAATTTTATTGTATATATAGTTAACTTTTGTTAACCTCTACTTTAAATAATAAATAAACACTATACAAATAATCCATAATATTTTAATAACCATATTAAACAAGACTTTTCAAATGTTAATCTATAACTTTGTATATAAGTCACAAAAGGAGCATAATCATTGTTGTCATGGAACTATTTCTAATTTGATACTAGTACTCATGAGTTCACTTCTCAGATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAGGTAAAATTAAAGAGGATCTAACTTAAAGAGTTTTTGCTAAGATAAATAAAATTTATACTAACAGTTGGCCAGTTCCTTCATCAGGTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCA</genome_strand>
        <mrna_strand>CAACCAAAATCACCATTTCTCTAAACCCTATTTTCTTCTTCTTCTCTTGCATTTTTCCAAAATCTCAAAAATTAGTAAGAAGAGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCATTTGGCCTCTGGTGCCGATG................................................................................GCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAAGTCCTAAAGACGTTATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAG....................................................................................GTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320601" ref_strand="+" ref_description="SGN-U320601        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:13788867-13790924 REVERSE | Aliases: T29A15.110, T29A15_110(evalue: 7e-85, score=311) genbank/nr: gi|21536672|gb|AAM61004.1| unknown [Arabidopsis thaliana](evalue: 6e-83, score=311)">
      <seq>ctttacccaagcgttacttgtaatacgaaagaaacaaaaccctacaccagaaacatcttttatcagttcttggtcgatagatgcatcttcttgattaatcagaatacattatttcctgtgggatcttgctgtcattgttctgttactgtaatcagactcatgaaggtgtggcatcagcacttgacgtgaaggattactttcatgatctgcagcctctccatctactacttcagtgactatagaaatgaagccaagaaccaacggggtgtcaaggtcccagaagtccaatggtgttcagagtgagggtcctaactgggtcataattgcaggtagtgcgttattaagtacattatctgtacgcttagggtacaagctgaagcaggtgcttgattcaagacagccaaacaagacgaccagcagtttgaaaggaaatgaaaagtcttctgatggaagtaagttagggaatggtcatatgcagtcaagcacttactatttttcccaagatgatgatggctgctacaattgcaacacggaagctggaggattaggaattacaaagcagcagtataatgggtctgagcctgaaatggtgctccctctggtggcagttcctgccatcggattcaataaagagaatggtggggtttggtcaacctctcctgaccgtcttgaactaccacagaaaccatttcatcgctctaacagctctgagtcaccatgtgtctctgaatccggttctgacatatacagcaagcgagaagtgatacaaaagctgaggctacagttaaagagaagggacgaaacaatattagagatgcaagaacagattgtagagttgcaagcttctctcaatgctcagatgtcgcattctgctcatcagcagtcattgctggatgctgccaacagggatctgtttgattcggagagagagatacagaggctgaggaaggctattgcagatcattgtgttggacaagtaggttcgtgcgataagcccccaacagtacctgtatggccagctgaagtccgttatggtcatcatactaacggccaccttgaagttgataggaattcagatacttcagagaagggaagaggagatggagaaaggtttgaaatgctgaagcgcgaaaaagatgagttgaaagaagtgatcgaagggaaggattatctgatcaagaactacaaggagcaaaccgtcgagctttcaatcaaggtcaaggaactgcaacagagactggatgctcagctcccaaacattttgtagccgcgtcgttagagttgtgtattcttttgtttgcttcccattctcttgattgattttaaagcttcatgacatgggacttgctattttctcagttttatctgagttttttctcccctccccctccctccacctttctgttttgtgttcatcatgtcgacgaaccgattttcgatataccttctcttagtattagtagattgagtttgaggattgccctcctgtgttgctgaacatgtaaaaatggttcatcatgcattgaaaaattttcatctatatattcaagagacttttgctcaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="62825" stop="56502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62525" g_stop="62424" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62423" i_stop="59982" i_length="2442">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59981" g_stop="59893" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="191" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="59236" i_length="657">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.550" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59235" g_stop="58999" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="428" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58998" i_stop="58918" i_length="81">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58917" g_stop="58813" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="533" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58812" i_stop="57832" i_length="981">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57831" g_stop="56802" g_length="1030"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="1563" r_length="1030" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1564" polyA_stop="1575"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U320601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1563</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62525" e_stop="62424"/>
          <exon e_start="59981" e_stop="59893"/>
          <exon e_start="59235" e_stop="58999"/>
          <exon e_start="58917" e_stop="58813"/>
          <exon e_start="57831" e_stop="56802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACCCAAGCGTTACTTGTAATACGAAAGAAACAAAACCCTACACCAGAAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAGGTACTTTTTTGATGTACCCTTTTCGTTTTCTTGAATTTTAATGATGGGAATTTCATCTTGTGTTGGTTATGGTATCTGAGCTGTGTAGAAATTTGTTTGGGTGTTTGAATTTCATGTTTGCATTAGCTATGGTCTCTGAATTGTGCAGAAATTAGTTCTGCGTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGTATAGTCCAAGGATTGGGGAGGTTTTTTTCTTTTTGATATATATATAGCCTTTTGTGTCTTTGAATTTCATTTTGCATTGGCTATGGTCTCAGAAGTCCAAGGATTGGGGAGCTTAGCTTTGTTTTTTATAAATAAATTTTCGGGTCTTTGAATTTCATTTTGCATTGGGTATAGTCTCTGAACTGTGCAGAAATTAGTTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGATTAGAACAAGGATTGAGGAGCTTTTTTTTTTTATATATATATATAACCTTTTCGGGAATTTTTTGTGTGGGTAGTTTCATGTAACATTTGTTATGACCTGGTTAAGTATATGAAAATAAATGGTGTTTTTGTGTGTACTTGTGTTCTGTTTTTGTGATTGAATCTGTGGGTTTATGTTTCAGTTTTGTTTTCGTGAATTAGAGGTTTTATAGGTGCTCTTTTTTGTTGTATGGTAAGTCGGAGATAGCTAGAGTAGGTGGGTGATTGAATGTGATGTTGAAGGCACCTGTGTCTCAATGAGCCATTTGATATCCTAATGACCAACGAGGTGAACAATCTTTTAAATAGAGGAAGTTCAAAAGAAAGAGATGGACGACATATCTCAATTTCAATTTGTTAGACTAGGCAGCACATGTTTGTCATGGGATTGCAGATGTCGTACTGTGTGTCTTATATATTTGAGTTTGACTTTCTTTTTATTTAAAAGGTATAGTGTATTTCATTAGTAGCAATCAAGGAAGCAATCTATGTGAAGATAGTGCTTATGTAATGTGTGTTTAATGTGTTGCTTGTTAAAACTTCTGAATGCCACACTATCAGTAAGTATTTAACTTTCTCCTCCTTAGGCTAGAAGCAACTTCTAAGCTATGTTTTCCTTAGCAACTTTTAATTCTCATGTAACGACTTTTCGAGATTGCTTGTTCTGGTTTTATATGATCTAGTACAATCTATCTTGTGATGGAAGACTATTAAATAGATAATTGCATAATTGGGTTAGGTTAGTCATCAACTTCGAAAGTAAATGACTCCAATCTTATTGTCCGCTCATGCAAAAAGCTAGACTTTCTTGTCACTGTTTTCTTGCCTTTTCGTCATCTGAAGTCTAAACTCCAGGGAACTTTTATATGTTTCCAATTTCCTTATATCATTGTCACTCCGAATCTGCTAGTCTGCTAGTCTTCTAGTCTTCATGTGGATGGCTCTTATAGGCTTACTGCTTTGGTCTTATACGTGGAAAGCCTGACTCAGTAATCCTGTTAGCCATTTCAACTTCAGGTCTTCTTCCCTATATTGTCTCTGTCGTGTGTGTGTACTGTGTGACTTATATACTGCTGGTGCTATCAAGGTTCGAGTTTTACTCCGCGTTAAAGAATAATATATTTAGTTCTGGGCGCCATTTTGATTGTCGTAATCTGAATTAGCCATTTTAAGTAGAGGATCCAAGTTTGACACTATTAATTATGCTTTATTAGGTGCAATATTGTCATCGAAACTAGGACTATTCTGTTTTGTGGTTCAGGGGGAAGGAATATACCGTCGAATTTTAGGCCTTCTCTGATCGTTGTAAACCAATAATTTTTCTCTTTCCTTCAGATTTTCCTTGGATGAATAATTTCCTTTTTTTTTTCTCAAGCAACTTTCTCGTTAATTAGCTGACTATCCTGCCTTAGAGAATTATCTTCATGAACTGAGATTCCTTCCCCGTGTTACTTCTTCCTTCAAAATATTCAATTATCAATGGATATCTTAATTCACTGCGAAGAGGTTGGAAATGACCTTACAGCTTCCTCTTCTGCAACACATCAACCTTCTCCGTAGCTGTTATTTTTTGGATTCTTTGCTTTACCCTCATAAAGGTATTCGCAGCTGCATAGTTTATAGAGGAAGAACGAAACTGGTAAGGCCTCGACTGAGAGTAGCAGATGCAGTTACTGGTTTTAAGTTGTCACCATTTGTTTGAGTGACCTTGTGAAATGTGAACTATTGATTGATGCTATAAACTAATATCAATGATCCAAGTGAATGTAACTAATATCCTGAATGAGCAGTGTATTCCGAACATACAGCTTATTTAAATGAGCAAGCATGCAATAGGTTGCCGTAAATGCAATGCCAGCAGATCTGTCTACATGATCTTTTTTCTATTTGTACTTTAATTAATTATTTCTTCCCTTATTATACTGTCCTTATGGGTTATCGGTGCTGTACTTCCATTGCTTTTTCTTTCAGAATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAGGTATCCATGCTATCAGAATTGTATGATTGCAGTTAGTTTTCCTTCTGTGAACTAGGAATGTGTTGCTTGTTCTACACTTTGGTACTTATTCTTATGGGAATTTTGTTGCTTGTGCTACACTCTGGTACTTATTCTTCTGGTATCTTTTAGGAAAAAAGGGAAATAAAGTACAGATGTGAAACACACTATCAAGGATATGGAAACAAATTAATTATACATGTCCACCTATAGGTATTATAGAAAACTCCAGATCCTCCTTCAAATAGCTTACTTTACTTTTTGAGAACTTCAATAGCTTACTCTTTATTCCAGGAAAAAAAACTTCATTTCTCCCCTTCAGTCAAAAGCTCCAAATATTTTTGCCATTACAGATCCCACTTTTCATATATAAAGTATTGGCAATTTTATAAATAAAATGACTCAGAAAATCTACTCACGTGGAGCTAAACAGATACCATACTATATGTGGACAGCTTGACCTTGCATTTTCTGAGTCTTTTTCACTATCAAATGCCTGTTATGGCCTTGTTTGGCTGCAAAGTTTATTGTAGTTATAATGTTATATTTTTCAACAGCCTATAAGCATACTGATTTGAGTGCTCAGGTATTTGTGCTTCTCCTGGCATATATTGACGTTATTCCACATTTGCTATATAGGATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAGGTCCTACATTGTTTAAAGCAATTTGGTTTGTCTTGTAAAATTATTTTGCCTCTTAGATATGAGAAATGGCTTAAATTGTAGGAAATGAAAAGTCTTCTGATGGAAGTAAGTTAGGGAATGGTCATATGCAGTCAAGCACTTACTATTTTTCCCAAGATGATGATGGCTGCTACAATTGCAACACGGGTATGCAAATTCTTGCCATCCCTTTGATGTTTTATCTTAGAATTTAGGTTGTTCTTTTTGGTGTAAAGAACGTGGCTAGTGATTTGATGTTGTCATCATCTTTTTCCTGTACTCCTGTTGATTGTAACTCCCAAATTTGCGAGAGAATGATTTGAACAAGTAAAGTTAATCACAGAGGCATCATCAACAATGTTTACATGTTAGTGTTGATTATTTGGTTGCTTTCTAACATGAAAATGAGACACGACACTCTTCAGAATTTAGACCTGTTTACAGTTATCTTACTCGCTTTAAGAAGTTTATGGTAATGTCAAGTGAAAGATTGAAACTGAGCTTATGTGATCAATATGATGATTTTCTTGGTATACACTATGCTGATTTTTCTTCAAAAACAGAAGGTTAATAAATTACCACTGCAGTTAGTCCAACAGCTAACCTTAAGGAAATAAAGAGTCATGGGAAAAGTCGAGTTCTATTTATGTCTAACCTTTTTGTTCCCATTTTGCTCATGCTTATTATTTGATCTTATGGTCCAGTTTGTTTGCTGAAATGTATACTACAACATCTTATGGGGTGTCACTGTTTCCTGCCATATTATGGGGCATGATTTGGGGTATCTCTGTTGGTGGCTCATGCAACTTACGTGTAGCCTAGTTCAACGTACAATTTTCTGGGAACTGCTAAGGTTTCTTTTTTCTCCCATTAGAACTCTTAAAGAGCCCTCAGGCCTTCAGTCTAGTGGACGCAACACAAGTTGTGTGAATAGGTCCTCTAGTTTTTTAGGTATCATTTGGTGGATTAGCTGACAATTCAGTATTTCTTGTGTTTTTTGAGTTTTGTTTTCATCTTATTATTTTTCTCAAGATTAGTGTGCTTGAAATGGTGTGATTAAATGTGCTTCCATCTCTTGTACATCTTACAATAGTCTATTAACTATTGTTGGCTACTTTTAGTGAACATTTGCTATTTTTATACTGACAGAAGCTGGAGGATTAGGAATTACAAAGCAGCAGTATAATGGGTCTGAGCCTGAAATGGTGCTCCCTCTGGTGGCAGTTCCTGCCATCGGATTCAATAAAGAGAATGGTGGGGTTTGGTCAACCTCTCCTGACCGTCTTGAACTACCACAGAAACCATTTCATCGCTCTAACAGCTCTGAGTCACCATGTGTCTCTGAATCCGGTTCTGACATATACAGCAAGCGAGAAGTGATACAAAAGCTGAGGCTACAGTTAAAGAGAAGGGACGAAACAATATTAGAGATGCAAGAACAGATTGTAGAGTTGCAAGCTTCTCTCAATGCTCAGATGTCGCATTCTGCTCATCAGCAGTCATTGCTGGATGCTGCCAACAGGGATCTGTTTGATTCGGAGAGAGAGATACAGAGGCTGAGGAAGGCTATTGCAGATCATTGTGTTGGACAAGTAGGTTCGTGCGATAAGCCCCCAACAGTACCTGTATGGCCAGCTGAAGTCCGTTATGGTCATCATACTAACGGCCACCTTGAAGTTGATAGGAATTCAGATACTTCAGAGAAGGGAAGAGGAGATGGAGAAAGGTTTGAAATGCTGAAGCGCGAAAAAGATGAGTTGAAAGAAGTGATCGAAGGGAAGGATTATCTGATCAAGAACTACAAGGAGCAAACCGTCGAGCTTTCAATCAAGGTCAAGGAACTGCAACAGAGACTGGATGCTCAGCTCCCAAACATTTTGTAGCCGCGTCGTTAGAGTTGTGTATTCTTTTGTTTGCTTCCCATTCTCTTGATTGATTTTAAAGCTTCATGACATGGGACTTGCTATTTTCTCAGTTTTATCTGAGTTTTTTCTCCCCTCCCCCTCCCTCCACCTTTCTGTTTTGTGTTCATCATGTCGACGAACCGATTTTCGATATACCTTCTCTTAGTATTAGTAGATTGAGTTTGAGGATTGCCCTCCTGTGTTGCTGAACATGTAAAAATGGTTCATCATGCATTGAAAAATTTTCATCTATATATTCAAGAGACTTTTGCTCA</genome_strand>
        <mrna_strand>CTTTACCCAAGCGTTACTTGTAATACGAAAGAAACAAAACCCTACACCAGAAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAG.................................................................................GAAATGAAAAGTCTTCTGATGGAAGTAAGTTAGGGAATGGTCATATGCAGTCAAGCACTTACTATTTTTCCCAAGATGATGATGGCTGCTACAATTGCAACACGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGGAGGATTAGGAATTACAAAGCAGCAGTATAATGGGTCTGAGCCTGAAATGGTGCTCCCTCTGGTGGCAGTTCCTGCCATCGGATTCAATAAAGAGAATGGTGGGGTTTGGTCAACCTCTCCTGACCGTCTTGAACTACCACAGAAACCATTTCATCGCTCTAACAGCTCTGAGTCACCATGTGTCTCTGAATCCGGTTCTGACATATACAGCAAGCGAGAAGTGATACAAAAGCTGAGGCTACAGTTAAAGAGAAGGGACGAAACAATATTAGAGATGCAAGAACAGATTGTAGAGTTGCAAGCTTCTCTCAATGCTCAGATGTCGCATTCTGCTCATCAGCAGTCATTGCTGGATGCTGCCAACAGGGATCTGTTTGATTCGGAGAGAGAGATACAGAGGCTGAGGAAGGCTATTGCAGATCATTGTGTTGGACAAGTAGGTTCGTGCGATAAGCCCCCAACAGTACCTGTATGGCCAGCTGAAGTCCGTTATGGTCATCATACTAACGGCCACCTTGAAGTTGATAGGAATTCAGATACTTCAGAGAAGGGAAGAGGAGATGGAGAAAGGTTTGAAATGCTGAAGCGCGAAAAAGATGAGTTGAAAGAAGTGATCGAAGGGAAGGATTATCTGATCAAGAACTACAAGGAGCAAACCGTCGAGCTTTCAATCAAGGTCAAGGAACTGCAACAGAGACTGGATGCTCAGCTCCCAAACATTTTGTAGCCGCGTCGTTAGAGTTGTGTATTCTTTTGTTTGCTTCCCATTCTCTTGATTGATTTTAAAGCTTCATGACATGGGACTTGCTATTTTCTCAGTTTTATCTGAGTTTTTTCTCCCCTCCCCCTCCCTCCACCTTTCTGTTTTGTGTTCATCATGTCGACGAACCGATTTTCGATATACCTTCTCTTAGTATTAGTAGATTGAGTTTGAGGATTGCCCTCCTGTGTTGCTGAACATGTAAAAATGGTTCATCATGCATTGAAAAATTTTCATCTATATATTCAAGAGACTTTTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332626" ref_strand="-" ref_description="SGN-U332626        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | invertase/pectin methylesterase inhibitor family protein, low similarity to SP:P83326 Pectinesterase inhibitor (Pectin methylesterase inhibitor) (PMEI) {Actinidia chinensis}; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor | chr5:25849060-25849728 FORWARD | Aliases: MUB3.14, MUB3_14(evalue: 6e-40, score=160) genbank/nr: gi|15237747|ref|NP_201267.1| invertase/pectin methylesterase inhibitor - related [Arabidopsis thaliana] gi|2765244|emb|CAA73335.1| invertase inhibitor homologue [Arabidopsis thaliana] gi|10178065|dbj|BAB11429.1| invertase inhibitor homolog [Arabidopsis thaliana] gi|21554624|gb|AAM63637.1| invertase inhibitor homolog [Arabidopsis thaliana] gi|28392992|gb|AAO41931.1| putative invertase inhibitor homolog [Arabidopsis thaliana] gi|28827216|gb|AAO50452.1| putative invertase inhibitor homolog [Arabidopsis thaliana](evalue: 5e-38, score=160)">
      <seq>gcacgagaaaaaatatatatatttgaaaagcaaagtcaatatgtcttgtaatttccacttcttattgatccttgttttcttgatttcacttcatgaattaccaacaatttccaccacctcatcatcaattgatttgattcaaaaaacatgtaaaaacacaaaatactatgatctttgtgtatcatctctcaaatcagattccacaagcctcaaagcagacacaaaaggcttagcaactatcatggtcaaaattggaatggtcaatgccacagccacaaacaattttctttcatcacatgaattagtacttaacactactaataattacacaaataatgatttggtattaatgaagaaactcatcaaagattgtgctgataaatatgcattagctactaatgcacttcaagattcacttcaagatttgaataatgaagtttatgactatgcttacatgcatgttatggcggctgcggattatcctaacgtttgtcataatggatttaagaggaatccaagattggattatccaactcaacttgctattagggaagatggatttaaacatatttgtgatgtggttttaggtattcttgatgctcttggttggtgaaaaaaaataatcccctttttttttttttatgttatatgatatgtaaactttttctattattatatatgtgtttagtttgtctttatctatgtgtagatttaaagaaatgaggatttgtatgttgcctttaattgttcactctttttatgtattgagagtttacctttttatgcaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="66603" stop="65217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66303" g_stop="65516" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="790" polyA_stop="805"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U332626" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332626" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66303" e_stop="65516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGA-AAAAAATATATATATTTGAAAAGCAAAGTCAATATGTCTTGTAATTTCCACTTCTTATTGATTCTTGTTTTCTTGATTTCACTTCATGAATTACCAACAATTTCCACCACCTCATCATCAATTGATTTGATTCAAAAAACATGTAAAAACACAAAATACTATGATCTTTGTGTATCATCTCTCAAATCAGATTCCACAAGCCTCAAAGCAGACACAAAAGGCTTAGCAACTATCATGGTCAAAATTGGAATGGTCAATGCCACAGCCACAAACAATTTTCTTTCATCACATGAATTAGTACTTAACACTACTAATAATTACACAAATAATGATTTGGTATTAATGAAGAAACTCATCAAAGATTGTGCTGATAAATATGCATTAGCTACTAATGCACTTCAAGATTCACTTCAAGATTTGAATAATGAAGTTTATGACTATGCTTACATGCATGTTATGGCGGCTGCGGATTATCCTAACGTTTGTCATAATGGATTTAAGAGGAATCCAAGATTGGATTATCCAACTCAACTTGCTATTAGGGAAGATGGATTTAAACATATTTGTGATGTGGTTTTAGGTATTCTTGATGCTCTTGGTTGGTGAAAAAAAATAATCCCCTTTTTTTTTTTTTATGTTATATGATATGTAAACTTTTTCTATTATTATATATGTGTTTAGTTTGTCTTTATCTATGTGTAGATTTAAAGAAATGAGGATTTGTATGTTGCCTTTAATTGTTCACTCTTTTTATGTATTGAGAGTTTACCTTTTTATGCAAG</genome_strand>
        <mrna_strand>GCACGAGAAAAAATATATATATTTGAAAAGCAAAGTCAATATGTCTTGTAATTTCCACTTCTTATTGATCCTTGTTTTCTTGATTTCACTTCATGAATTACCAACAATTTCCACCACCTCATCATCAATTGATTTGATTCAAAAAACATGTAAAAACACAAAATACTATGATCTTTGTGTATCATCTCTCAAATCAGATTCCACAAGCCTCAAAGCAGACACAAAAGGCTTAGCAACTATCATGGTCAAAATTGGAATGGTCAATGCCACAGCCACAAACAATTTTCTTTCATCACATGAATTAGTACTTAACACTACTAATAATTACACAAATAATGATTTGGTATTAATGAAGAAACTCATCAAAGATTGTGCTGATAAATATGCATTAGCTACTAATGCACTTCAAGATTCACTTCAAGATTTGAATAATGAAGTTTATGACTATGCTTACATGCATGTTATGGCGGCTGCGGATTATCCTAACGTTTGTCATAATGGATTTAAGAGGAATCCAAGATTGGATTATCCAACTCAACTTGCTATTAGGGAAGATGGATTTAAACATATTTGTGATGTGGTTTTAGGTATTCTTGATGCTCTTGGTTGGTGAAAAAAAATAATCCCCTTTTTTTTTTTTTATGTTATATGATATGTAAACTTTTTCTATTATTATATATGTGTTTAGTTTGTCTTTATCTATGTGTAGATTTAAAGAAATGAGGATTTGTATGTTGCCTTTAATTGTTCACTCTTTTTATGTATTGAGAGTTTACCTTTTTATGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329605" ref_strand="+" ref_description="SGN-U329605        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: aminotransferase,(evalue: 2e-77, score=290)">
      <seq>ctgaggttgtagagattggattggacgaaaacgggctagtagatatggaagcattgagggatcagcttgagttgtataagtctacgaatagaccattgttgggttcgttctcagcttgtagtaatgttactgggacttattctgatacaagagccatcgctcgtttacttcataaaaatggagcttttgcttgctttgatttcgcagcaagtggtccatatgcgaaaatagagatgagatcaggagagatcgatggatatgatgctgtttttattagtcctcataaatttcttggaggtccaggcacacctggaattcttgtaatgaacaaagcactctatcgattgaggacttcacctccatctacttgtggaggtggtactgttgattttgttaacccgtacaatgaaaaggacacactttatgtggagaatattgaagaaagggaagacgctggtacaccgccaatcattcagaaagtgagaacagcacttgcattttgggtgaaagagttcataagtcataaagtaattgaaagaatggaacacacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="73160" stop="74485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73460" g_stop="73670" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73671" i_stop="73755" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73756" g_stop="73957" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="413" r_length="202" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73958" i_stop="74044" i_length="87">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74045" g_stop="74185" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="554" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-U329605" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73460" e_stop="73670"/>
          <exon e_start="73756" e_stop="73957"/>
          <exon e_start="74045" e_stop="74185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAGGTATGTTAATTGAGTTTGACTTTTATACACTGACAGTACTAAGTATGTCACGGAAATATGACTAATTTATGGTGTTATGTTGCAGTGGTCCATACGCGAAAATAGAGATGAGATCAGGAGAGATGGATGGATATGATGCTGTTTTTATTAGTCCTCATAAGTTTCTTGGAGGTCCAGGCACACCTGGAGTTCTTGTAATGAACAAAGCACTCTATAGATTGAGGACTTCGCCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCCTACAATGAAAAGGTATGTATGTACTAAGTTACGCGGACTCTTCATCTTCTGCTTAGCTCTCAAGATAATTCTGAACTTGATATATAATAAAATAAACAGGACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTAC</genome_strand>
        <mrna_strand>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAG.....................................................................................TGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAG.......................................................................................GACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328084" ref_strand="+" ref_description="SGN-U328084        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: aminotransferase,(evalue: 2e-21, score=104)">
      <seq>attgaaatgggctatactggagttaagccgggatggacaaggataagctttccctactacatgtcgaaagaagaatttgagttcattctagcagcattagaattcatatccatttatggacaaaggttccttcctttatacaatttcaattggaagagtggtgcttggactttcaaaaagaaagctttgaaagagacgcttacgagagggatggatcacaattgcaacttttgtggctcaccaatgatgaaggagttgaacttaggtggtgccaatacttgccatgataacacaaaagaaggatcatgcactaacagtaacaaagaaggcattatttataagtacgtaaagtatcttgagacagccaagcgcgtagctagcctccttcctaaattcccacagcagagaccaatacctgaagaactagacactaatcttgtgtcctttagagcctgataaaaatatgtatatgaaaataaactttgtccaatgtcttgttgggcaaattcgatcgtttgatatgtaataataacttcaaagtatatgtattcccttcgttttgtttttacttgttcagtatgtattttgtattttctttaagaaaaacataaagtattttttgatttctcattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="76122" stop="74889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75901" g_stop="75893" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75892" i_stop="75812" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75811" g_stop="75192" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="629" r_length="620" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="647"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U328084" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75901" e_stop="75893"/>
          <exon e_start="75811" e_stop="75192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAATGGTGAGTTTCGATAAATAAAGGATTTTTACTTATGTACTATATAATTATCTTTTTAACGTTAACTTTTCACTTGATATATAGGGCTATACTGGAGTTAAGCCGGGATGGACAAGGATAAGCTTTCCCTACTACATGTCGAAAGAAGAATTTGAGTTCATTCTAGCAGCATTAGAATTCATATCCATTTATGGACAAAGGTTCCTTCCTTTATACAATTTCAATTGGAAGAGTGGTGCTTGGACTTTCAAAAAGAAAGCTTTGAAAGAGACGCTTACGAGAGGGATGGATCACAATTGCAACTTTTGTGGCTCACCAATGATGAAGGAGTTGAACTTAGGTGGTGCCAATACTTGCCATGATAACACAAAAGAAGGATCATGCACTAACAGTAACAAAGAAGGCATTATTTATAAGTACGTAAAGTATCTTGAGACAGCCAAGCGCGTAGCTAGCCTCCTTCCTAAATTCCCACAGCAGAGACCAATACCTGAAGAACTAGACACTAATCTTGTGTCCTTTAGAGCCTGATAAAAATATGTATATGAAAATAAACTTTGTCCAATGTCTTGTTGGGCAAATTCGATCGTTTGATATGTAATAATAACTTCAAAGTCTATGTATTCCCTTCGTTTTGTTTTTACTTGTTCAGTATGTATTTTGTATTTTCTTTAAGAAAAACATAAAGTATTTTTTGATTTCTC</genome_strand>
        <mrna_strand>ATTGAAATG.................................................................................GGCTATACTGGAGTTAAGCCGGGATGGACAAGGATAAGCTTTCCCTACTACATGTCGAAAGAAGAATTTGAGTTCATTCTAGCAGCATTAGAATTCATATCCATTTATGGACAAAGGTTCCTTCCTTTATACAATTTCAATTGGAAGAGTGGTGCTTGGACTTTCAAAAAGAAAGCTTTGAAAGAGACGCTTACGAGAGGGATGGATCACAATTGCAACTTTTGTGGCTCACCAATGATGAAGGAGTTGAACTTAGGTGGTGCCAATACTTGCCATGATAACACAAAAGAAGGATCATGCACTAACAGTAACAAAGAAGGCATTATTTATAAGTACGTAAAGTATCTTGAGACAGCCAAGCGCGTAGCTAGCCTCCTTCCTAAATTCCCACAGCAGAGACCAATACCTGAAGAACTAGACACTAATCTTGTGTCCTTTAGAGCCTGATAAAAATATGTATATGAAAATAAACTTTGTCCAATGTCTTGTTGGGCAAATTCGATCGTTTGATATGTAATAATAACTTCAAAGTATATGTATTCCCTTCGTTTTGTTTTTACTTGTTCAGTATGTATTTTGTATTTTCTTTAAGAAAAACATAAAGTATTTTTTGATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329605" ref_strand="+" ref_description="SGN-U329605        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: aminotransferase,(evalue: 2e-77, score=290)">
      <seq>ctgaggttgtagagattggattggacgaaaacgggctagtagatatggaagcattgagggatcagcttgagttgtataagtctacgaatagaccattgttgggttcgttctcagcttgtagtaatgttactgggacttattctgatacaagagccatcgctcgtttacttcataaaaatggagcttttgcttgctttgatttcgcagcaagtggtccatatgcgaaaatagagatgagatcaggagagatcgatggatatgatgctgtttttattagtcctcataaatttcttggaggtccaggcacacctggaattcttgtaatgaacaaagcactctatcgattgaggacttcacctccatctacttgtggaggtggtactgttgattttgttaacccgtacaatgaaaaggacacactttatgtggagaatattgaagaaagggaagacgctggtacaccgccaatcattcagaaagtgagaacagcacttgcattttgggtgaaagagttcataagtcataaagtaattgaaagaatggaacacacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="77253" stop="75929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76953" g_stop="76743" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76742" i_stop="76659" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76658" g_stop="76457" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="413" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76456" i_stop="76370" i_length="87">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76369" g_stop="76229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="554" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U329605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76953" e_stop="76743"/>
          <exon e_start="76658" e_stop="76457"/>
          <exon e_start="76369" e_stop="76229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAGGTATGTTAATTGAGTTTGACTTTTGTATACTGACATACTAAGTATGTCGCGAAAAGATGACTAATATATGGTGTTATGTTGTAGTGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAGGTATGTATGTACTAAGTTGCGCGGACTCTTCATCTTCTGCTTAGCTCTCATGATAATTCTGAACTTGATATATAATAAAATAAACAGGACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTAC</genome_strand>
        <mrna_strand>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAG....................................................................................TGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAG.......................................................................................GACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346178" ref_strand="+" ref_description="SGN-U346178        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: aminotransferase,(evalue: 3e-42, score=175)">
      <seq>ggaatttgaacaaccaatgtttagagaacaccacaacactaagaaatataaccatagtagttctattagtagtactgattcctctgttgcttcacatgaagatttgagaagtagaattgaatcatttcatgttagggaaaaagctatgtccaaaactgaatctgctgaaaaaaaactttcatggctacgttcacagattattggtgaaaatgtcgatttcgattcgccttttgggaaacgtaagcttacttatgctgatcatactgcctctggaagatcacttcaatatatcgaaaattatatcatgaataacgtccttgctttctatggtaatagtcatactagtgacagtcatgtgggatatcaaacgacgaaaatagtgcatgaagcagcagcttatgtgaagaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="77976" stop="76871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77676" g_stop="77348" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77347" i_stop="77254" i_length="94">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77171" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="412" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U346178" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77676" e_stop="77348"/>
          <exon e_start="77253" e_stop="77171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTTGAACAACCAATGTTTAGAGAACACCACAACACTAAGAAATATAACCATAGTAGTTCTATTAGTAGTACTGTTTCCTCTGTTGCTTCACATGAAGATTTGAGAAGTAGAATTGAATCATTTCATGTTAGGGAAAAAGCTATTTCCAAAACTGAATCTGCTGAAAAAAAACTTTCATGGTTACGTTCACAGATTATTGGTGAAAATGTCGATTTCGATTCGCCTTTTGGGAAACGTAGGCTTACTTATGCTGATCATACTGCCTCTGGAAGATCACTTCAATATATCGAAAATTATATCATCAATAACGTCCTTCCTTTCTATGGTATGTTCGTTTACCTTAGTAACTATGTACGTACGATACTCCTTTATCCTTAACCAGAAGGGAAAGATAACAACTATTGTATTATTTTGTACAGGTAATAGTCATACTAGTGACAGTCATGTGGGATATCAAACGACGAAAATAGTGCATGAAGCAGCAGCTTATGTGAAGAAATGC</genome_strand>
        <mrna_strand>GGAATTTGAACAACCAATGTTTAGAGAACACCACAACACTAAGAAATATAACCATAGTAGTTCTATTAGTAGTACTGATTCCTCTGTTGCTTCACATGAAGATTTGAGAAGTAGAATTGAATCATTTCATGTTAGGGAAAAAGCTATGTCCAAAACTGAATCTGCTGAAAAAAAACTTTCATGGCTACGTTCACAGATTATTGGTGAAAATGTCGATTTCGATTCGCCTTTTGGGAAACGTAAGCTTACTTATGCTGATCATACTGCCTCTGGAAGATCACTTCAATATATCGAAAATTATATCATGAATAACGTCCTTGCTTTCTATG..............................................................................................GTAATAGTCATACTAGTGACAGTCATGTGGGATATCAAACGACGAAAATAGTGCATGAAGCAGCAGCTTATGTGAAGAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346850" ref_strand="+" ref_description="SGN-U346850        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 2e-30, score=135)">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="92943" stop="91958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92643" g_stop="92258" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U346850" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92643" e_stop="92258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTGCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGCCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTACGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345356" ref_strand="+" ref_description="SGN-U345356        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|53689767|gb|AAU89777.1| gag-pol polyprotein-like [Solanum tuberosum] (evalue: 7e-22, score=105)">
      <seq>aggctggttctgagttggatctatgtttgatgaagggaagtagaccggaggtcttgcatcagcaatattagtaccaaatccaggtggaggcgcatcctgtctccgttgcatttcaactttcatttcagcaatctgttgcatcagttgcatgatcaattcattctgttccactacagtgggctgagcgaccacaacgtcagtaagacgcccttcgtcattgttgtctcccataactgtttttcctttatctgaatttgatcgagggaaggaatctgtaggacctttcgatctggtgaagtaaggatgatctgccagctttattgacacagatcagtaaaaaggtacctgaaaggtaaaaacaactcaaaggcaaatttgttagtgcatatccagagtacaaaatgcttaatatcgcacataaaaccgataaacacacaagtcgttttgtttgaggatatcttaacccacgaataaggacggatatatattttgaacaaacaggaatttgtttgtttggcgttatcttgggaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="93781" stop="92647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93481" g_stop="92947" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U345356" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93481" e_stop="92947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTGGTTCTGAGTTGGACCTATGTTTGATGAAGGGAAGTAGACGGGAGGTCTTGCATCAGCAGTATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGCATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGT-AAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAACACACAAGTCATTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAAGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</genome_strand>
        <mrna_strand>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGTTGCATGATCAATTCATTCTGTTCCACTACAGTGGGCTGAGCGACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTATCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAAAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCTTAATATCGCACATAAAACCGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGTTATCTTGGGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338284" ref_strand="+" ref_description="SGN-U338284        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: RNase(evalue: 2e-76, score=161)">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="99274" stop="100613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99573" g_stop="100313" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-U338284" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99573" e_stop="100313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAATGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCTCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTGC-GTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325967" ref_strand="+" ref_description="SGN-U325967        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: RNA-directed(evalue: 1e-85, score=318)">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="99337" stop="100667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99632" g_stop="100367" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-U325967" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99632" e_stop="100367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAATGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCTCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACTG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330462" ref_strand="+" ref_description="SGN-U330462        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to axi 1 (Nicotiana tabacum) GI:559921; contains Pfam profile PF03138: Plant protein family | chr5:25842393-25845580 FORWARD | Aliases: MUB3.12, MUB3_12(evalue: 5e-44, score=115) genbank/nr: gi|10178063|dbj|BAB11427.1| auxin-independent growth promoter-like protein [Arabidopsis thaliana](evalue: 3e-42, score=115)">
      <seq>attcgactctctgaactctgaatcatcgaaaattgtgtaattttgtagccattgatgagtcgaggagtgtgaaattttgtataagaaatggggaacagaggccatactcagtacagaacgacaaggaggacatccaatttctcaattactctctacattttcctcttttttgttttgtcaatgttcgtattcttttattacactaaggatatcgtagaagatgaacaaaagcttgtcttggcatcggagaagaaggaagagcctgaattcgatgagaatgaagataattctgtttgggaagcttcaaagagccatggtttacatccatgcattaagccaactgcaaaatacaaagctgctctaggatggaaacgctacttgactgtaaaaagtaatggtggattaaatcaaatgaggacgggtatagctgacatggtggcagtggcacatgtgatgaatgcaactttggtaattcctcaattggacaagcgttcattctggcaagattcaagatatatttgatgagaaccatttcattaaagcattacgaggagacctcatgattattaaagagcttcctaaagaaatagaatctttacctcgagctaggaagcacttcacgtcatggtcaggagtgggttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="126195" stop="121069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125895" g_stop="125620" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125619" i_stop="125192" i_length="428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125191" g_stop="125113" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="355" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125112" i_stop="124713" i_length="400">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124712" g_stop="124645" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="423" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124644" i_stop="122071" i_length="2574">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122070" g_stop="121982" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="512" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121981" i_stop="121503" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121502" g_stop="121369" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="646" r_length="134" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U330462" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125895" e_stop="125620"/>
          <exon e_start="125191" e_stop="125113"/>
          <exon e_start="124712" e_stop="124645"/>
          <exon e_start="122070" e_stop="121982"/>
          <exon e_start="121502" e_stop="121369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGACTCTCTGAACTCTGAAGCATCGAAAATTGTGTAATTTTGTAGCCATTGATGAGTCGAGGAGTGTGAAATTTTGTATAAGAAATGGGGAACAGAGGCCATACTCAGTACAGAACGACAAGGAGGACATCCAATTTCTCAATTACTCTCTACATTTTCCTCTTTTTTGTTTTGTCAATGTTCGTATTCTTTTATTACACTAAGGATATCGTAGAAGATGAACAAAAGCTTGTCTTGGCATCGGAGAAGAAGGAAGAGCCTGAATTCGATGAGGTTGTTATTTAATTTATTTATTTCTTGAAATTGCTTAAAGTTTTCATTTTTATGGTGATTCTGCTGTGTTGTTTTGCTTATATTGCTTAGTTTATTGATGGGTGGTTTGAGCTGATCTTTTGTAATTTGGGCTAGAGAGTTTCTGGATATGTCATAATTTTCTGAAATTTTGCTTTTTATTGCATCAAGGGGTGGCCTAGTTGGTGGCGGAGTTAGGATTTTCAAGAAAAGGATTTGAAATATAAAAAGTACAGGCATATGTGAAATATTACTTTAACAATGTAGAAATAGTGTAGTTTTTTGTCGTAGGTTCGGAAGAACCCCTCAGCTCTTGCTTGCTACTCCCGTTGGCCTAGTTGTTAATGGAGTAGGTTGAGCACCATGAGATGACTTGTGTTAGTGAGAACGTCTTCTTTTGACTTTTGCAGAATGAAGATAATTCTGTTTGGGAAGCTTCAAAGAGCCATGGTTTACATCCATGCATTAAGCCAACTGCAAAATACAAAGGTTAAACTCTACTACTACAGCTTGTGCTTCTTTTGCTACCTGCTAGTTAATATGGAAAAAAGGTATCTCCATTGCCTTTTGGGAGCACTAATTTTTTCTGAATTTTGTAAAAGGGAAATACTTGATTATCTCAAGATCTCATTTTTCAGATTCTTTTTATAGGGTGTGGGGACAATTTTCTGTATGTCGTTTCTTATGTGTTCTATCAGTTCATGCCTGTGTTTGTTTAAAGCTGAAACAGCGTATTTCAGTCATAAAAATAGATAAAAGATCATGCCTTTGCTGTTTTCTATCAATTGCAATCTCTTAAACATGTACCAACTCATGCACAATATGAACCTTTTGTATGCTGTAACTTTTAAGCAGATAGTCTTATGCAGAATTTATACTTCTTGTCCAGCTGCTCTAGGGTGGAAACGCTACTTGACTGTAAAAAGTAATGGTGGATTAAATCAAATGAGGACGGGTGTAAGTTTGATCTTTCCTTAGATTTCTAATTTCCATTTTCTGTGTGTATGTTACATAATTGTTCTTGTTTTTAATCCACAATAATTCAAAGAAATTGCTTTCATGCTACGGTTAGACGAGCTAAAAGTGTGGATTAGCTTAAACATGTAAATGCTAGTGGGCATGTAGTAACTTGTATGCACTTCTACTTGTATATTCCTAGGGTATCATTCAACAAGTTAACTTGATTGAAGCTGAGCCATTTAAAACCTTCAGCTTAGAAATAGATATTAAAGTAAGACAAATTAAAGTGGGCCTTTAAGTTTATACGCTGTTTGGAATGAAGTCTGTAAAAATAGCATTCATAGATAAAGGGGGTGGGGGGGAAGTTAACAAAAAAAGCAGTCTCATACGAAGTTGTGTTGCTGCAAGGAAATAGCTAAATGATGCACTAGCAATTTGATGATTCTTTAAATTTGAGACATATTTGGTATACAGAAAAACACTTTTCTCATTTATACTTTTTATCACATAAAATAATCATAACATGTCATATGAATGGGAATTAGATTTCTATAAGACCAGAAAACGTTGTTCCCAGCAAGAAGACGATGAATTATGATTGTAAGTTGGCATAGTTTTGGAAAGAAATGGCAGATCTGGACATGTCTATTGGTTAAGGTTGACCTCGCCCAATTTTATTAGCTTGATCTCCTTTTCTCTTCATGGAAAATTAAATAAACGTCCAAGTTTTTGTGGCATCACAGAAACTTACATGTTAATTTTGTAAGTTTACTTCAAATCCTCAAAACCCTAACTTGGCAACAAAAAGAAAGAATGGTTATTTTGAAAACAGAGTTGCCACTTAATTTTGCAAGGCAATTATGAAAACCTTTAATTTTTAAAAAAAGATTCTAACAGAAAAATCTTTTCAAAATTTCAAAGATAGGGTTCCTATTAACATTTCGAGAAGGTTCTAAGCCCTTGAAATGTCTGCTTAACACATGGTTATCTGTTGATTTAACTAAACAATTATTTGACTAACTTAATTGATTGAAGAATTTCTTAAATTTTTTAATATGTGAAAGGAAAAAGTATTTTTGGCATTTTGTTGAAAAGAAAAGCTCTTTTGGACTGTTTGAAAAGAAAAACTCTTTTGAAACTCTCAAGGCAATCTAAGTTAATTTAAAACTTCAGTATTTAAGACAAATAAAATTACAAGGAACCAAAAATAAAACATAGCAACTCAAGGGGGATTCATCCAAGTTAGAATGAATGTTAGTATACAATACAATGAAATCAAGAAATAAGAGAAAATTTAAATTGGGCTCCTGAGACCCAATCTTTGCTACTAACAGATGATCTTCAGGCTCTATGCAGTATTACTGCTCCTACCCCATTTTATCTGCTCCTGCTGATGTAATTTCGGCCTCTGGACAGATTTATCTTCCATTTTCACACTGTTTGAGGCTGACTCAAAAGACATGTATTGAGCTTTAAGCAAATGCCAAAAATGATTGACTTAACTTAATGTCATACAATGCTTTGAAATTATGATAATAAAAATTTGAATAAGAACTCCATTTTTTGACCATTTTTGAGTTTTAACTCTATATCCAGATAATGAAATCATGCACCATACATATTTGATTCATATGTGTCAAATTAGAAACCTGGAACTTATCATACGTGTAAATCAAATTGAGTATTATGCTAACTAGAAGAATTAGTTTCCTCAAACCAAAGCTATCAGTCATACCAAATTCTATAGGTCACTAAGTTAACTTCAAATTCTTTCTCAAAATAAAATAAAATAGTTAACTTTAAATTGAAACATATCATAAAAATAAGATTTCATCTACTCTTAATCTACGAATTGAACATATCATAGAATAAGATATTCATCTACTCTTAATCCACTTTTAAAGTTACTAGATCAAATAATATTTTTACTTAGTAAGGAATTGACATGTTGCCAGGAAAATCTAAGACTCGATTTTTCAAAGATAGGCAAAATATCAGACAGGAAATAAACGCATAAGTGTCACTTTATTTTAAAGATGAGCTGATTTACGGGTGGAAAAAGGATGAGACGGACAGGAATTTGCCCGTGGATTTGGGATTTGCACATCCGAGGGTTGACTTGCGTTGAGCCTTGGTCTTCTTGTATCTTCAGCCGTTGCATTCCCAATATACGTTGATGTAGACATTATGAAATTCCCAATTTCTTGTATAATGGGTGGAAATAAAGTTTTCAAAGATGGGCGCTGAACCTTGGATAGGATGCCACGTATCTCGGCGTTGTTCGAACATACAAGGACTGATCTTTGATTTTCATTTATTCACGTTCACTCCAAGGGACAAAGTTCCATAAGTTTTGCTAATTTTGTTTTACATTGGTAAGATGATTATGCCATGACTTCTGAAGTGCTGACTCATGAATCATTATGTTGTTGGATGTAGTCCCGTCTCATTATTGAAATGTCATTCTGGTCATGCCCTTTCTTTAAGCAAATATATCCACATATTTATAAGTTAATGAAGTACTTTCCCCTTCAGTCTTAATTTTTTCATTTTGCTTCTTTTTGCTTACAGATAGCTGACATGGTGGCAGTGGCACATGTGATGAATGCAACTTTGGTAATTCCTCAATTGGACAAGCGTTCATTCTGGCAAGATTCAAGGTCATATTTTTTTCTGTACTGTATATCTTACAACTTCACATGGCTTGTCATTCTTTTAGAAATGTGTTTATATATGTAATGTATTGCTTAGATGGTGGTCTCCTTGTATGGACTTGTGCAGTCCCCTCCTCATGGGCTAGATTTTGAGGTTGAGTTAGGTCCAAGATTCATTTATTTACATGGTACCATAGCAGGACCCATCATACCCGATGTTGAGCCCCAAAATTAAATTGCCCATGCTCCAGCTGTCTGGTCTCTTTTTATGGATTTGGGCAATCCTCCACTCACGAGCTATCTTTTGAGGTTGAGTTAGGCCCAAGATCTATTTCTTTACAAGTTTAGACTCTGATATTTTTCTTGTTTCTTGTAAAATTTCTGATGAGTGCTTTGATCTCTACCAACTGCTTTTTTTTTTTCACTTTATCTAAACATACTTACTCTAGTTTGTTCTAATGGGCTAATGTACAGTACATTTTCAGATATATTTGATGAGAACCATTTCATCAAAGCATTAAGAGGAGACCTCATGATTATTAAAGAGCTTCCTAAAGAAATAGAATCTTTACCTCGAGCTAGGAAGCACTTCACGTCATGGTCAGGAGTGGGTTACTAT</genome_strand>
        <mrna_strand>ATTCGACTCTCTGAACTCTGAATCATCGAAAATTGTGTAATTTTGTAGCCATTGATGAGTCGAGGAGTGTGAAATTTTGTATAAGAAATGGGGAACAGAGGCCATACTCAGTACAGAACGACAAGGAGGACATCCAATTTCTCAATTACTCTCTACATTTTCCTCTTTTTTGTTTTGTCAATGTTCGTATTCTTTTATTACACTAAGGATATCGTAGAAGATGAACAAAAGCTTGTCTTGGCATCGGAGAAGAAGGAAGAGCCTGAATTCGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGATAATTCTGTTTGGGAAGCTTCAAAGAGCCATGGTTTACATCCATGCATTAAGCCAACTGCAAAATACAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCTAGGATGGAAACGCTACTTGACTGTAAAAAGTAATGGTGGATTAAATCAAATGAGGACGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGACATGGTGGCAGTGGCACATGTGATGAATGCAACTTTGGTAATTCCTCAATTGGACAAGCGTTCATTCTGGCAAGATTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTTGATGAGAACCATTTCATTAAAGCATTACGAGGAGACCTCATGATTATTAAAGAGCTTCCTAAAGAAATAGAATCTTTACCTCGAGCTAGGAAGCACTTCACGTCATGGTCAGGAGTGGGTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319522" ref_strand="+" ref_description="SGN-U319522        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | NADH-ubiquinone oxidoreductase-related, contains weak similarity to NADH-ubiquinone oxidoreductase 15 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-15 kDa) (CI-15 kDa) (Swiss-Prot:O43920) (Homo sapiens | chr2:19558333-19559354 FORWARD | Aliases: F17A22.8(evalue: 3e-37, score=151) genbank/nr: gi|15227113|ref|NP_182291.1| expressed protein [Arabidopsis thaliana] gi|25409052|pir||D84918 hypothetical protein At2g47690 [imported] - Arabidopsis thaliana gi|3738283|gb|AAC63625.1| unknown protein [Arabidopsis thaliana](evalue: 2e-35, score=151)">
      <seq>tagggcgattggcggccaatcggtttactccaatggcgtctggatggggaattacagggaataaaggacgatgctatgatttctggatggatttcagtgagtgtatgtctcgatgcagggagcccaaggactgtgtacttcttagagaagactacttcgagtgtcttcatcattccaaagagtatcaacgtaggaaccgaatctacaaagaggagcagcgccaattgagagctgcttcacaaaagaaaaaggaaggtgtagatggtggtggtggtggtcatcactgacctttattattcttgatcaatcatggttttatcaactaaaagacattgaagtaaactgtatgtggttttgaattttgaaataaagaattctatcagttgcatttgatgtgagttgcatcattgaaatgactcagttcagtttctttctcatatggcctggccttcgttttgttggtgataaggaacatatgttttaagggcacatttacttcttaccattggcactagacctatgatatcagttctttctttgaaatctgtgactcttacgtgtaatatgaaattcgcgatgggaagcctgcatcatgatgaaaagagctaggattttgctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="132917" stop="127662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132616" g_stop="132458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="182" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132457" i_stop="128401" i_length="4057">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128400" g_stop="127961" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="622" r_length="440" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U319522" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132616" e_stop="132458"/>
          <exon e_start="128400" e_stop="127961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAGGTACATTTCGATTTTTTTTCCCATTAGATTCCGATCTCTTTGGTATTTTCACCTTTGCTTAACAATCGTCCTTATCCTGAAGATTTAAACAACTCAGCAGTTCCATTAGGCAATTTGTCCTCAGCTGTATTTAGGGTTTTTAGAGATTTGATACTTTATAATCTGAATTGGTTCGAATAAAAGCTTCTCAGATTTGAATTCCCTCAAAGTATGGATTTTTTTTTCATTTTTCATCCAACATCAGATATATGTGTGGAACTGTAGGAGGTGATTTGCACTGTAGTTATTGATGATGGCGTTTATTAATTGACGAAGCAAGCAACTTGTTAATGAGTGGATGGAACTACAGAGAAACAATATGGATTGTAAGGTTTGTAGAAGTAAAATAGTAAACATGCTGAAAAAACTGTAAGTTTTGCTCTCATAAGAAGAACAAAAGTAAAGTGGGATTGGGCGAGATTATATTTCCTAAATGCAAACAATTTAGTTATCTGAGTCTAGTCTTACATGAGAATGACGTGATAGATAGAGATATAGCATATATAATGAAAATAGGATGGTTGAAGTGGAGGAGGTGCTGCATGATTACTATGTGATAGAAAGACACCTAATAAGTCAAAGGAAACTTCTATGGAATGGCTGTGAGAATAGCAATTTATATTATGGTAGTGAATATTGGTCCTCTAAGTTTCATCATATTAATAAAACAAGTAACATAGAAATGTGATGTTAAGATGGATATGCAGTCAGCAAGATGTACAAGATTAGAAACAACACATCAGAAAGATAGTTCAAGTAGCATACAGACATAAAATAAGAAAAGATTGATGAGATCGCTTGGCATGTATAGGGGAGGACCTCCATATATAGTATCCATTTATACTTGTACTGCACTCTTTCTTGGAATACCAAGGAATATAGATATTTGAAAATATTATGATTTTATGTCAAGGAAAATACATCTGATGAATCATACAGGGAAATGGAGAAAGTGGTATTTGTAAGTCAACCTATCGAAAAATTCACCAAATATGCATATGGCTGATGTCTAGTCGCCAAACATCATGGCAGGCTTACCAAGTATGCATGGATATCATTTCAAATAAATGCCTGTTTATCAATCTGGTTCATTATTTCAAACTTGAAAATAGAGAATTCAAAGTTTGAGGAGAGTTTATTGAGTAATATAATGGTTCACTTACAAGTCGTCAACTTTTTTCCAAGTGAATTTCATCTCCAAACACTACTTTAACATCCAAATATCCTTTTTCAATTTCAACTTACTCTTCTTTCCATTTCAAATTTTACCCAAAATTATGTCCAAATGCCAATTGATTCGTACTTGGTCTATATCAGTATAGCTGTTACTTTGAACTAGTTATGGTTCCCTTTAAGCTCTATTTGGGGGAAATTCAAGGTTACTGGCGATGACAAAATTTGGCTCACCAGCATGCCACATTATATATCTGCTAGATCTTTTCATTATTTGGATCATATCAAACACATTATGTGACTAAGCAGCTGAGGAGGACTTAAATTTAAGTAGGTGCTCTGAAGCCTTGTCATGTGATAAGAGATCTATAAATGATATATTTTGCTGATTGAAGGTCGTAAAATAACCCGAGATAGACCTAAATTAGTGGAGGGAAGTCGTCTCAAAAGACCTTTTAAGTTCTTTAGATTACAGATATTTTCTCATTCTTTGTAGCACAGATGTGGATTTCCACCCTTTGTCTATTTTAGAGTTATACCTGGACTTCTCTTCTTTTTTTTTGATAAAAAAGTTATACCTAGACATACCTCTTTGATTCGTCTTATTTAGGGTCTTTCACTCTTATCGAAAATAAAAACAAAAATTTAGGGTCTCTCAAGTGATTTCTTAGAGAAGCCATGAAAGCAAAGGCATTGCTATAAGTAGGAAATGGAAGTAGTCAATTTACAAGGACTGAACTGGAACATCTGTAGTTAAGCACCTTGTGTGCATTGTCTCGTCCTAAATCTGTAGAAAACATTACATCAGCTAATTTTTTATGGAGTCTCAAAAAGAGACGAATCTTGATTTATACAGCTATTTTTTTCCCTGTTATTTGATTTTGGCTCTTTCATTAATTGATCTTCTTGTCACTATCAGCATTACTATCTACTCTTCTGAGAAGCGTTGTTATTTTCTCTTGGAAGTGCCTCAAGCTACAGCCGAGATCTTTCTCATAAGTTGGGGGCTTGTGGTTAGGTGTTTTATGGTCCTGACAAGTTGTATAAACCTCATTACTTGATGTAGAAATTAGATTAGAAATTGGTGACAGGTGAAGTAATAGGAAAGAAGCTTCAATAGCTGTTTGTAGATCTCACCCAGCGAAGTAGCAAACCCTCCTTTCATTTTCCGTGTTGAGAGTACACATTTCAGTTTGTAGCTCATATACTACTTGTATTAATACATGCTTAATTATTCTAATATGTTAATGAGTGAAGTAAATGGTGGAAGCCTTTTCCAAGTTTAGCTACTGCAAGAAATTACCTACATCAAGGAAACTATGTTTTCTTAGACTTAATGGCATTAGTTGAGTGAGAAAGGTACCTTCTACTGTGATGGTGCCAAATAAATTATGATCTCTGTTCTCAAAGTCAGGATTTGCTAATCCCTGACCTTTGCAAAATCAGATATTTGTATGTAGAAAAACTTTGGCATTTATTTCTACCCCCAAAAGAAAGAAAAAGAAAAGAAAGTGATGGGAAGTACTTAATAATCTCAATGGGCAGTATTTCTCTCTGCTCATCTGAAAGTGATGTCTTTCGTCCCTGTTTATACAATCATCCTCTGTTCATCTTAATCATTGACTCAATGGGCAATACTTCTCTCTGCTCAACTGAAAGCGGCATCTTTCCTCCCTGTTTATAAAATCGTCCTCTGCTCTTCTCTTTGTCATATAGAGGCATGAATTTTGTAGAAACCTCTTCTTTTGACTAGTTATAATGTTTTAGGGACTAATGTATTTCCATTTAAAATCAGATGATGCAATTAGAAAATGCTCCACGTATATGGACATATACTTGCATGTGGTAACATTTTGTGAAATTATATTTGGTGAAAATTGTGGAGCATTGCTATCTCTCTAGTGTCTATGTTCCTTCAAATTAGGTTGAATTTGGAGCAAAGTCCCATTGATATCCAAGAATAGTCCTTGCCCGTTGAACGAATAAACTTTAACATCTATGGCAGACATTTTCCAGGGTGTGTGAGTGTCTTCTGACTTCAATATGTTAAATTAGGTATTGTGTCTGTGCTTCCTATCCTCTTCTTTTCATCTTATTGGGACACTTTAGTGCTCTACCTAGATTGTTGGATTACTAATCTACTGACATTTGAAACTCCGTATGGTACTCTGGTTTTCACTTTTCAGTCTTTCACAGTTCCACTATTTGTAGATCAAACTTGTTGGATCCTTTGCACCTCTTAATTCTACTTAGATTCATAGACTACTAACATACTATCCTACTTGTTCTGCTTATGTTATTGTTATTGCTCATGTTCAGGACAATGCTTTTTGATTGATTAGAACTCATTAAATTTGATTGATTTCCTTCTTAATTTAACCACAAATAAGCCCAAATTGGCCTTATAAGACACTTTGATATATGTATCAACTGAAGATTAAGAGATATTGAAGCCTTGAGGTGCATGAATTAGTAGTGTTCATGTGGTGTACCGGTGCCTTAAGCTCATTATTTTTCTGGGACAGACTATAGAACTCTATTACTTGGCTACTGTCGATGTCTTATACGATTGAGAGTTCTTTCTCTACTATGTTACTGCCCCACCTGCTACATGCTTGTCTCCTACTTATTAAAAAAATGGATATATGGTCATTCCCTCTTCACTTCCCCTCCTTTTGAGCTGTCGATGACCGACTGATTCAATCCATGTTGTCATTTTTGATGTGGTAAAATTCTTTGGAATTCTCTAGCTCAAAAACAAATGATGGCTCAGATATATTCATAAATCGTTTGGTACTTCTCATTGTACTCTTTAGTTACAGGGTTGTTGTTTCCTTTACTGCAGTATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTCATATGGCCTGGCCTTCGTTTTGTTGGTGATAAGGAACATATGTTTTAAGGGCACATTTACTTCTTACCATTGGCACTAGACCTATGATATCAGTTCTTTCTTTGAAATCTGTGACTCTTACGTGTAATATGAAATTCGCGATGGGAAGCCTGCATCATGATGAAAAGAGCTAGGATTTTGCTAAAT</genome_strand>
        <mrna_strand>TTTACTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTCATATGGCCTGGCCTTCGTTTTGTTGGTGATAAGGAACATATGTTTTAAGGGCACATTTACTTCTTACCATTGGCACTAGACCTATGATATCAGTTCTTTCTTTGAAATCTGTGACTCTTACGTGTAATATGAAATTCGCGATGGGAAGCCTGCATCATGATGAAAAGAGCTAGGATTTTGCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324858" ref_strand="+" ref_description="SGN-U324858        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | guanylate kinase, putative, similar to guanylate kinase (GMP kinase) (Bacillus halodurans) Swiss-Prot:Q9K9Y2; contains Pfam profile: PF00625 guanylate kinase | chr3:1877600-1879244 FORWARD | Aliases: F28L1.14, F28L1_14(evalue: 2e-86, score=316) genbank/nr: Guanylate(evalue: 7e-95, score=350)">
      <seq>cgaaacgaagccaaagcttgcagtataagattgaaatttgggaattgtgaatttggataaaccctagattggaatcgatagattctctatccatttacgtaaaattcaagctcaatttctacagtaacgcccaaattcactgcattttctctctcatcccctataaactcgatgcaatttcgcaggttctacacctctctagcgaattctaaccgcaacccatttctcctatatcgaaatctcacaaacccttttgctgttttcgaccctaacccacagtttctctctacacaaagaatcttgaaaaactgggttcaaaggccaattcgtgtgtcgaaacgttttgtctcatcatttcctgctatggcagaaggaagaagacccactcatgtgcctataccacccccagaaactgctgataaggcggaattgtatcgagcacttgaggctgcggtggggtcgcagtttagttcagagccattggcaccggagcctcatcctttgattattgtggttagtggtccaagtggggttggtaaagatgctgtgattaaaaggcttagagaagttagggagaatattcattttgttgttactgcaacgacaagggggaaaaggccgggtgaggttgatggaaaagattacttttttacgagtaaagaagagtttttgtcaatgattgagagacatgagttgttggagtatgcattggtgtatggggattataagggtataccaaagcaacaaattagggatcatatggctaaaggattggatattgtgttgagagttgatatacaaggtgcagcaacactgaggaggattttgagaaattctgcagtgtttgtgttcttggtggcggagagtgaagatgcattggttaagaggttgattgataggaagactgagactaaagagactttgctagtgagaattgcaacgtctcgagaggaagtgaggcatatgggggagtttgattatgtggtagtgaataaagaaggagagttggagaattctgttaagttaatggagtctattattgatgctgagaaagctaaagtgaggcaaagaacagtgacaatttagagagtctgtttttcagttttttgatctgtttttgattaagttgagctgatactcttaatgttgtcttgtattcaatttatgcaacattgtttttcctaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="138752" stop="136969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138452" g_stop="137269" g_length="1184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1184" r_length="1184" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1189" polyA_stop="1206"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-U324858" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1184</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138452" e_stop="137269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACGAAGCCAAAGCTTGCAGTATAAGATTGAAATTTGGGAATTGTGAATTTGGATAAACCCTAGATTGGAATCGATAGATTCTCTATCCATTTACGTAAAATTCAAGCTCAATTTCTACAGTAACGCCCAAATTCACTGCATTTTCTCTCTCATCCCCTATAAACTCGATGCAATTTCGCAGGTTCTACACCTCTCTAGCGAATTCTAACCGCAACCCATTTCTCCTATATCGAAATCTCACAAACCCTTTTGCTGTTTTCGACCCTAACCCACAGTTTCTCTCTACACAAAGAATCTTGAAAAACTGGGTTCAAAGGCCAATTCGTGTGTCGAAACGTTTTGTCTCATCATTTCCTGCTATGGCAGAAGGAAGAAGACCCACTCATGTGCCTATACCACCCCCAGAAACTGCTGATAAGGCGGAATTGTATCGAGCACTTGAGGCTGCGGTGGGGTCGCAGTTTAGTTCAGAGCCATTGGCACCGGAGCCTCATCCTTTGATTATTGTGGTTAGTGGTCCAAGTGGGGTTGGTAAAGATGCTGTGATTAAAAGGCTTAGAGAAGTTAGGGAGAATATTCATTTTGTTGTTACTGCAACGACAAGGGGGAAAAGGCCGGGTGAGGTTGATGGAAAAGATTACTTTTTTACGAGTAAAGAAGAGTTTTTGTCAATGATTGAGAGACATGAGTTGTTGGAGTATGCATTGGTGTATGGGGATTATAAGGGTATACCAAAGCAACAAATTAGGGATCATATGGCTAAAGGATTGGATATTGTGTTGAGAGTTGATATACAAGGTGCAGCAACACTGAGGAGGATTTTGAGAAATTCTGCAGTGTTTGTGTTCTTGGTGGCGGAGAGTGAAGATGCATTGGTTAAGAGGTTGATTGATAGGAAGACTGAGACTAAAGAGACTTTGCTAGTGAGAATTGCAACGTCTCGAGAGGAAGTGAGGCATATGGGGGAGTTTGATTATGTGGTAGTGAATAGAGAAGGAGAGTTGGAGAATTCTGTTAAGTTAATGGAGTCTATTATTGATGCTGAGAAAGCTAAAGTGAGGCAAAGAACAGTGACAATTTAGAGAGTCTGTTTTTCAGTTTTTTGATCTGTTTTTGATTAAGTTGAGCTGATACTCTTAATGTTGTCTTGTATTCAATTTATGCAACATTGTTTTTCCTA</genome_strand>
        <mrna_strand>CGAAACGAAGCCAAAGCTTGCAGTATAAGATTGAAATTTGGGAATTGTGAATTTGGATAAACCCTAGATTGGAATCGATAGATTCTCTATCCATTTACGTAAAATTCAAGCTCAATTTCTACAGTAACGCCCAAATTCACTGCATTTTCTCTCTCATCCCCTATAAACTCGATGCAATTTCGCAGGTTCTACACCTCTCTAGCGAATTCTAACCGCAACCCATTTCTCCTATATCGAAATCTCACAAACCCTTTTGCTGTTTTCGACCCTAACCCACAGTTTCTCTCTACACAAAGAATCTTGAAAAACTGGGTTCAAAGGCCAATTCGTGTGTCGAAACGTTTTGTCTCATCATTTCCTGCTATGGCAGAAGGAAGAAGACCCACTCATGTGCCTATACCACCCCCAGAAACTGCTGATAAGGCGGAATTGTATCGAGCACTTGAGGCTGCGGTGGGGTCGCAGTTTAGTTCAGAGCCATTGGCACCGGAGCCTCATCCTTTGATTATTGTGGTTAGTGGTCCAAGTGGGGTTGGTAAAGATGCTGTGATTAAAAGGCTTAGAGAAGTTAGGGAGAATATTCATTTTGTTGTTACTGCAACGACAAGGGGGAAAAGGCCGGGTGAGGTTGATGGAAAAGATTACTTTTTTACGAGTAAAGAAGAGTTTTTGTCAATGATTGAGAGACATGAGTTGTTGGAGTATGCATTGGTGTATGGGGATTATAAGGGTATACCAAAGCAACAAATTAGGGATCATATGGCTAAAGGATTGGATATTGTGTTGAGAGTTGATATACAAGGTGCAGCAACACTGAGGAGGATTTTGAGAAATTCTGCAGTGTTTGTGTTCTTGGTGGCGGAGAGTGAAGATGCATTGGTTAAGAGGTTGATTGATAGGAAGACTGAGACTAAAGAGACTTTGCTAGTGAGAATTGCAACGTCTCGAGAGGAAGTGAGGCATATGGGGGAGTTTGATTATGTGGTAGTGAATAAAGAAGGAGAGTTGGAGAATTCTGTTAAGTTAATGGAGTCTATTATTGATGCTGAGAAAGCTAAAGTGAGGCAAAGAACAGTGACAATTTAGAGAGTCTGTTTTTCAGTTTTTTGATCTGTTTTTGATTAAGTTGAGCTGATACTCTTAATGTTGTCTTGTATTCAATTTATGCAACATTGTTTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325668" ref_strand="+" ref_description="SGN-U325668        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphatidylinositol 4-kinase (PI4K), nearly identical to gi:4467359 | chr5:25654202-25661672 REVERSE | Aliases: MHJ24.5, MHJ24_5(evalue: 6e-44, score=174) genbank/nr: gi|3366930|gb|AAC28070.1| putative phosphatidylinositol 4-kinase [Solanum tuberosum] (evalue: 1e-42, score=176)">
      <seq>tccaagcgagttctttgattatttcaaagttctatgcatccaagggtttctcacatgtcggaagcacgcagagcgtataattcttcttgtcgagatgcttcaggattctggttacccttgtttcaagggtggtccccgaacaattcagaacctaagaaagagatttcatcttagtttaacagaagagcaatgtgtttccttggtactttctttgattagcagtagcttggatgcgtggcgtactcgtcaatatgattattatcagagggtcttaaatgggatattatgaggtcaaagtgagtttatccacaccgaaacgtgattatacatgtgaagagaaaccgatctttaacttgtttgctgagaggggcttggttgggaaagagcaattcactatatgaacgtgttcttctgattctgtcgaggttaaaggattgcttgtcctttgcagtttgcttctctttctgaggaatttgtagttgtacctgcgaatgttgtattgaaatataccaggtgcaagctctcttcaagaagagctttaatttctagtttcactcaattttcaagattattggacaaaggcatgggttgtcttcagtgaagagatttgtcgagtacacccacccacccgtgggtacatactgtacagagctgtgtaagagattgcaacagtggtggcttgctgccagaacgcgagagacagacagacggctgttggtaccgtttgaattgaatcatgagtttgctggtgcaacatgatatttggtttgtacaatagcttatttgctttgattttgtttttcattttcccttttattgtgtcaaaggcattatttagattagcagtaggaaaattgcagcctgctcttaattttcaagtctttgattctttgtgttcaccaggagattctgaaacagcagagttgtaatgtataatatttttttccaccaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="159007" stop="163875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159307" g_stop="159334" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="159335" i_stop="159415" i_length="81">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="159416" g_stop="159490" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="103" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="159491" i_stop="162643" i_length="3153">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="162644" g_stop="162727" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="187" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="162728" i_stop="162807" i_length="80">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="162808" g_stop="163565" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="944" r_length="757" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="951" polyA_stop="974"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-U325668" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159307" e_stop="159334"/>
          <exon e_start="159416" e_stop="159490"/>
          <exon e_start="162644" e_stop="162727"/>
          <exon e_start="162808" e_stop="163565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGCGAGTTCTTTGATTATTTCAAAGTAAAATATTGTTTACTATGTATTTTGTATCTAGACTTCTTTTTGTTTTTTTGTGCTTTAAACCTTTTTTCCTGTCTTCAGGTTCTATGCATCCAAGGGTTTCTCACATGTCGGAAGCACGCAGAGCGTATAATTCTTCTTGTCGAGATGCTTCAGGTAGATCCTGATATGTAAAACCTTTGTTTCTGATATATGAATCTCACTTACTAATGGATGGTGGAACGGGGACTGGGGGAATTTTGTAAAAGTAGGAAAGGATTAGAAATGTCCTGTAGTTCTGATGCTGCAAACTTCCCATTTTTCAGTATCTTAGACTTCCATATTTGGTAGGCTAAGCCTTTATCAAGGAAGACTTTTTTCCAACTTTACTCTTTTTGGATCTCGAAAATACCACCAAAGATGCACCTATCAAGAAAAAGAAGTGTCAAAGATGCAGTACAAAATTACGTACTGCTCCTCGATATCCCAAATTAAGTATACTGCTTTGACTTGTCACGGTATCAAGAGATGATCTGAAGATGTTAGTTACTTCTTATTTAAGGGGGTATGTGTTGGGAGCATCACTTTTGTCTTCTTCTGAGGGTGTATGTGCTGGAGAAAGATGGCAAGTTCAACGTGAAATCAGCCTATAAATTACTAGACATTTCAACTGAAACCAAAGATATGTGGCCTTGGAAGATGATCTGGAAAGTGAAGATACCACATAAGGTGGCTTGCTTCACATGGCTTGTTGCAAGACAATGTGTTCCGACTCAGGATAACTTAATGAAAAGAGGAAAGGACTTATGCTCCAGATGTTCTTTTTGTGAATCTGAGACAGAGACAATAAACCATCTTTTTTTGCATTGTAAATGACTGAGAAACTATGGAACTATTTCATTAACATGAGAGGTATCACATGGACCATGCCTAGAAATACTGCATAAGTCCTAGCATGTTGGAATAGAGATGGAAATAGGACACAAGGAGAGATGGAAGATTGTCGCTGCCTGCATCTGGTGGACAATATGGAGTGAGAGAAATCAGAGATGTTTTGAGAACAAGAGCATCCCTTTCCAAAGCATTAAAATGAATTGTTTAGTGACCTTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAACTGTTTGGCAATACTCAAAATAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCATATTTTTATGTTTTTTCCCTTAATATTTTTATACAATCTCCAAATTACCCATAAAACCCTAACATCTCTTTCTTCTATTTTTCCCTTTTCACGTTTGGCATAACAACTTCAGCACTTCTATCCAAACGCATAACTGCTTATTTTAAAAATAAGTTTCAACACTTTCAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCTCTTAGTCTTTTACTTTTGGTGTATCTATTTATTTCCTAGGATCCGGGGGACATCACCCTATTCTTAGATAATTTATGAGGGAGATGCGTGTTTAGATTCTTTTTGGTAAATCCTCTATACTTTTGATGGAATTACCACAGGAGTTCACTATTGGTATACTTATCTGTTTATAATACCAGTTAACTTTCTCAAAAATAAATAAATAAAGATCTTATAACTGTCATAAACAGAATCAAGAAGCTACCATTTGTGTCTCATAAAATTGGCAATAGAGGAGAAACAGTTAAATCTCATATTCATTTTCTATTTTCTACCCATAGAGAATTTATACTGATTGAGTTAATCTATTAGGAGAAGACCAAGGGTTTACAACAAAGAATGTATATCCTTGGGAAAATTGATTGAAATTTACTGGGAAGGAAGAAGGATCTCCATATAGTATTCATTAACTTAGAGAAAGCATATGATGGAGTGCAGAGATGCCTTTTGATGGTGCTTGAAAAGAAAGAAATCCATTCAACTGTAGTATAGGATATGTATGAGGGATTATTCACAAGTGTGACAACAGAGAGAGGAGATTTAGAGGCAGTTCATGTAACTGTTGTTTTAGATGAAGGATCTGCCTAAACTTGTGCTTGTTCAAATGGTTTTGAATGGGCTAACCAATAGTATTTAGGGTGATGTTCATGGCATTCTATTTGCAGAAAAAAGTATGTTCTATATAAACTCTGCAAGTGTACTTACAATTATAAGAAAACGGCGAAGTCATATTTGATGAGATTTTGGTGTCAAAACAGGGAATAATCATATATCTAGATTAGTCATCCAGAAGAAGCTTGTCATAAACAAAATAAGATGGTTGAATTGGGGGAGTGTCATAATAGGCTAAGTGAACTTGATGTCAAACTAAGTGGAAGGCAAGTTGTATGGAACGGTAGAACGGTACTATGAAGTAACCCGAGCATCTAAACCTTTTAAAACTTGTTCAGTACCATTATAAGCTCCATTTAAAACCTTGCACAGCCGGTGACAGACAAGGAATATTTTAAAATCCTGAGTTACCTATTTTTTAAAAAAGGGGATACTTTAAAATCCTCTTGGGTGTGTAACTCGCTTGTGTTTACAAATGGGTTGAGGAGGTTCCCTTTCAGTTCATTTCATCTCATCTTTTTCTTAACCTCTTCTTTATTTTTTTTACTCGTGAAGTATCAGAAAGGAACACAAATTTAATCCAAAGTTAAACAGAATGATCTATCATAAGAGAAAGCAAAATCATCACAAAGAATCTCAGAATCTCTTAAGCATCATACATCCACAAGTGAGATTAATAGTTTGTTTAGCCAAACTTCTAAGAAGCCAGAAGCTTATTATTTAAAAAGTGCTTACTTTAGAGTTGAACAGGCTATATATAGAATGAAAGAAGAAACTCTATGATATATCTTGCATGTCTTAATGAATCTCTAGCTTCTTCCCAATTTTTGTTTCCAGGATTAGTACTGGAAATGATAGTTTGAAAGTTGTTTGTGAAGGTTGGATGAGCGATAGTCTAAGGGCTCTTCTGAGATGAGCTATTTTCTTGTTTACCATCTGGGCACGGTCATGTTGTTTCCCTTGATTGGCATGGGCCATGTTGTTTCCCTGGATTGGCTTACACAACTTGTATTCCTGTTCTCAATCCTATTTAGCTCGACTGTTGTATATGTGATTGAGTTACTAAGCATACTTGTTCTGTCAAACACGTTTTCGTCTTTATTGAATATATACATTGATCTCCTAATAACACAGAATTTGTTTCACTTTGATCTTTATATCAGGATTCTGGTTACCCTTGTTTCAAGGGTGGTCCCCGAACAATTCAGAACCTAAGAAAGAGATTTCATCTTAGTTTAACAGAAGAGGTTTGTTACTGGTCCTGAAATTAATTAATTCCTTATTTTTATCATCTACTTGATCATTATGCTTTGTTTGTCTTTGCCAGCAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTTGCAGTTTGCTTCTCTTTCTGAGGAATTTGTAGTTGTACCTGCGAATGTTGTATTGAAATATACCAGGTGCAAGCTCTCTTCAAGAAGAGCTTTAATTTCTAGTTTCACTCAATTTTCAAGATTATTGGACAAAGGCATGGGTTGTCTTCAGTGAAGAGATTTGTCGAGTACACCCACCCACCCCGTGGGTACATACTGTACAGAGCTGTGTAAGAGATTGCAACAGTGGTGGCTTGCTGCCAGAACGCGAGAGACAGACAGACGGCTGTTGGTACCGTTTGAATTGAATCATGAGTATGCTGGTGCAACATGATATTTGGTTTGTACAATAGCTTATTTGCTTTGATTTTGTTTTTCATTTTCCCTTTTATTGTGTCAAAGGCATTATTTAGATTAGCAGTAGGAAAATTGCAGCCTGCTCTTAATTTTCAAGTCTTTGATTCTTTGTGTTCACCAGGAGATTCTGAAACAGCAGAGTTGTAATGTATAATATTTTTT</genome_strand>
        <mrna_strand>TCCAAGCGAGTTCTTTGATTATTTCAAA.................................................................................GTTCTATGCATCCAAGGGTTTCTCACATGTCGGAAGCACGCAGAGCGTATAATTCTTCTTGTCGAGATGCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGGTTACCCTTGTTTCAAGGGTGGTCCCCGAACAATTCAGAACCTAAGAAAGAGATTTCATCTTAGTTTAACAGAAGAG................................................................................CAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTTGCAGTTTGCTTCTCTTTCTGAGGAATTTGTAGTTGTACCTGCGAATGTTGTATTGAAATATACCAGGTGCAAGCTCTCTTCAAGAAGAGCTTTAATTTCTAGTTTCACTCAATTTTCAAGATTATTGGACAAAGGCATGGGTTGTCTTCAGTGAAGAGATTTGTCGAGTACACCCACCCA-CCCGTGGGTACATACTGTACAGAGCTGTGTAAGAGATTGCAACAGTGGTGGCTTGCTGCCAGAACGCGAGAGACAGACAGACGGCTGTTGGTACCGTTTGAATTGAATCATGAGTTTGCTGGTGCAACATGATATTTGGTTTGTACAATAGCTTATTTGCTTTGATTTTGTTTTTCATTTTCCCTTTTATTGTGTCAAAGGCATTATTTAGATTAGCAGTAGGAAAATTGCAGCCTGCTCTTAATTTTCAAGTCTTTGATTCTTTGTGTTCACCAGGAGATTCTGAAACAGCAGAGTTGTAATGTATAATATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="7443" PGL_stop="7622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7443" e_stop="7622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="7443" e_stop="7622" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7443" stop="7622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAAGACTTTAGCAATATATAACTCATATTATAACAAGTTTCAAAATTTTCCAACAATTTGGTACAAGAGGTTATATATTGATTTTTTTCAAGAAAAAAAAAACGATCGGGGTAGGTATAGGGGGAGGGGATTACATAACAATGTGGAGAATCGAAACGATATGATGCGAGTTCAGATA</gDNA_template>
            <first_frame> Y  K  T  L  A  I  Y  N  S  Y  Y  N  K  F  Q  N  F  P  T  I  W  Y  K  R  L  Y  I  D  F  F  Q  E  K  K  N  D  R  G  R  Y  R  G  R  G  L  H  N  N  V  E  N  R  N  D  M  M  R  V  Q  I </first_frame>
            <second_frame>  I  R  L  *  Q  Y  I  T  H  I  I  T  S  F  K  I  F  Q  Q  F  G  T  R  G  Y  I  L  I  F  F  K  K  K  K  T  I  G  V  G  I  G  G  G  D  Y  I  T  M  W  R  I  E  T  I  *  C  E  F  R   </second_frame>
            <third_frame>   *  D  F  S  N  I  *  L  I  L  *  Q  V  S  K  F  S  N  N  L  V  Q  E  V  I  Y  *  F  F  S  R  K  K  K  R  S  G  *  V  *  G  E  G  I  T  *  Q  C  G  E  S  K  R  Y  D  A  S  S  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0054I23.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9185" PGL_stop="7787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9185" e_stop="8948"/>
            <exon e_start="8383" e_stop="7787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9185" e_stop="8948" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="8947" i_stop="8384" i_length="564"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8383" e_stop="7787" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9185" stop="8948"/>
              <exon start="8383" stop="7787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGAAGGAGGATGTGACTATAAGACGGTGCAGGAGGCGGTGAATGCTGCACCGGAGAAGGAGCAAACCCGGAAGTTTGTGATATGGATCAAATCCGGGTTGTATGAGGAGAAGGTTCGGGTCGGGTTGGAGAAGATGAATGTGGTGTTTTTGGGTGATGGAATGGGTAAAACTGTCATTACGGGTTCGTTGAGTGTTGGTCTTGCTGGTGTTACTACTTATGAGACTGCAACTGTTG : GAGTTGTTGGTGATGGATTCATGGCTAGTGGTATCACCTTCCAAAACACAGCCGGTCCGGATGCTCACCAAGCCGTAGCATTCCGATCCGACAGTGATCTTTCCGCTGTAGAAAACTGTGAATTCATTGGCAATCAAGACACCCTATACGCCCACGCTTTGCGCCAATACTACAAGTCCTGCCGTATCCAAGGTAATGTAGACTTCATTTTCGGAAACTCAGCTTCTTTCTTTCAAGACTGTGACATCCTAATAGCACCTCGACAACTCCGTCCTGAAAAGGGAGAGACGAATGCTGTGACTGCTCATGGCAGGATAGACCCTGCACAATCAACTGGTTTCGTCTTCCAAAATTGTTTGATCAATGGAACTGATAAATACATGACCTTGTACTACAACAAACCCAAAGTCCACAAAAATTTTCTGGGAAGACCATGGAAGGAGTATTCTCGGACCGTGTTTCTAGATTGTACTTTAGAGGCTCTTATATCGCCTAACGGATGGTTGCCTTGGAGTGGTGATTTCGCGTTGAAGACTCTATACTACGGAGAATATAGAAATACTGGTGCCGGAGCTAATACAGCAGGACGAGTGTCGT</gDNA_template>
            <first_frame> K  E  G  G  C  D  Y  K  T  V  Q  E  A  V  N  A  A  P  E  K  E  Q  T  R  K  F  V  I  W  I  K  S  G  L  Y  E  E  K  V  R  V  G  L  E  K  M  N  V  V  F  L  G  D  G  M  G  K  T  V  I  T  G  S  L  S  V  G  L  A  G  V  T  T  Y  E  T  A  T  V   : G  V  V  G  D  G  F  M  A  S  G  I  T  F  Q  N  T  A  G  P  D  A  H  Q  A  V  A  F  R  S  D  S  D  L  S  A  V  E  N  C  E  F  I  G  N  Q  D  T  L  Y  A  H  A  L  R  Q  Y  Y  K  S  C  R  I  Q  G  N  V  D  F  I  F  G  N  S  A  S  F  F  Q  D  C  D  I  L  I  A  P  R  Q  L  R  P  E  K  G  E  T  N  A  V  T  A  H  G  R  I  D  P  A  Q  S  T  G  F  V  F  Q  N  C  L  I  N  G  T  D  K  Y  M  T  L  Y  Y  N  K  P  K  V  H  K  N  F  L  G  R  P  W  K  E  Y  S  R  T  V  F  L  D  C  T  L  E  A  L  I  S  P  N  G  W  L  P  W  S  G  D  F  A  L  K  T  L  Y  Y  G  E  Y  R  N  T  G  A  G  A  N  T  A  G  R  V  S  </first_frame>
            <second_frame>  R  K  E  D  V  T  I  R  R  C  R  R  R  *  M  L  H  R  R  R  S  K  P  G  S  L  *  Y  G  S  N  P  G  C  M  R  R  R  F  G  S  G  W  R  R  *  M  W  C  F  W  V  M  E  W  V  K  L  S  L  R  V  R  *  V  L  V  L  L  V  L  L  L  M  R  L  Q  L  L  :  E  L  L  V  M  D  S  W  L  V  V  S  P  S  K  T  Q  P  V  R  M  L  T  K  P  *  H  S  D  P  T  V  I  F  P  L  *  K  T  V  N  S  L  A  I  K  T  P  Y  T  P  T  L  C  A  N  T  T  S  P  A  V  S  K  V  M  *  T  S  F  S  E  T  Q  L  L  S  F  K  T  V  T  S  *  *  H  L  D  N  S  V  L  K  R  E  R  R  M  L  *  L  L  M  A  G  *  T  L  H  N  Q  L  V  S  S  S  K  I  V  *  S  M  E  L  I  N  T  *  P  C  T  T  T  N  P  K  S  T  K  I  F  W  E  D  H  G  R  S  I  L  G  P  C  F  *  I  V  L  *  R  L  L  Y  R  L  T  D  G  C  L  G  V  V  I  S  R  *  R  L  Y  T  T  E  N  I  E  I  L  V  P  E  L  I  Q  Q  D  E  C  R </second_frame>
            <third_frame>   G  R  R  M  *  L  *  D  G  A  G  G  G  E  C  C  T  G  E  G  A  N  P  E  V  C  D  M  D  Q  I  R  V  V  *  G  E  G  S  G  R  V  G  E  D  E  C  G  V  F  G  *  W  N  G  *  N  C  H  Y  G  F  V  E  C  W  S  C  W  C  Y  Y  L  *  D  C  N  C  W :   S  C  W  *  W  I  H  G  *  W  Y  H  L  P  K  H  S  R  S  G  C  S  P  S  R  S  I  P  I  R  Q  *  S  F  R  C  R  K  L  *  I  H  W  Q  S  R  H  P  I  R  P  R  F  A  P  I  L  Q  V  L  P  Y  P  R  *  C  R  L  H  F  R  K  L  S  F  F  L  S  R  L  *  H  P  N  S  T  S  T  T  P  S  *  K  G  R  D  E  C  C  D  C  S  W  Q  D  R  P  C  T  I  N  W  F  R  L  P  K  L  F  D  Q  W  N  *  *  I  H  D  L  V  L  Q  Q  T  Q  S  P  Q  K  F  S  G  K  T  M  E  G  V  F  S  D  R  V  S  R  L  Y  F  R  G  S  Y  I  A  *  R  M  V  A  L  E  W  *  F  R  V  E  D  S  I  L  R  R  I  *  K  Y  W  C  R  S  *  Y  S  R  T  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9185" stop="8948"/>
                    <exon start="8383" stop="7788"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEGGCDYKTVQEAVNAAPEKEQTRKFVIWIKSGLYEEKVRVGLEKMNVVFLGDGMGKTVITGSLSVGLAGVTTYETATVGVVGDGFMASGITFQNTAGPDAHQAVAFRSDSDLSAVENCEFIGNQDTLYAHALRQYYKSCRIQGNVDFIFGNSASFFQDCDILIAPRQLRPEKGETNAVTAHGRIDPAQSTGFVFQNCLINGTDKYMTLYYNKPKVHKNFLGRPWKEYSRTVFLDCTLEALISPNGWLPWSGDFALKTLYYGEYRNTGAGANTAGRVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9919" PGL_stop="9237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9919" e_stop="9237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9919" e_stop="9237" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9919" stop="9237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343677" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTCCGAAAATTTAAGCTTCTGTTCATTTCCATGGCTTCCTTTTTCACACTCACTATCTTCTCCTTAATCCTCTTCTTCTCTATTTCCTCCGCCGCTCGCCACCATTCCTCCACATCCCCGTCAATTTCACTTCAGATCCGTGGTGCTTGTAAGGCTTCACGGGACCCACCAACATGTGAATCTGTATTGACGGATTCCGGTTACTTACCGTCTGAGCTAACGACGTCGTTGATCATCCAATCGGCTGTTAAAGTATCATCGAAGAACAACGATAAGGCGAAAGAGATGGTGCAGGCAATTATAGATGCGTCGACAGGGAATAATCAGAACCGTACGGACGCTGGGAAAGTGTGTATGGAGGTGCTCGGGTATGCGGAGTATCGGGTCGGGTTAACGGGTCAGGCAGTGATTAACGGCGGATACAAGAGCGCTCGTGCATGGATGAGCTCCGTTATGGTGTATCAATACGACTGCTGGTCCGCTTTGAAGTACGTTAATGGCACCTCCCAGGTATCTAAAACGATGTCGTTTATCAATTCCTTGATCGGATACAGCAGCAATGCATTGGGGATGATGGTGAATTTCGACCTTTACGGTGCTGATACCGGGTCATGGACCGTACCCAAAACAGAACGAGACGGGTTCTGGGAAGGTTCGGGTTCGGGTTCAAGCGGGTCGGGT</gDNA_template>
            <first_frame> Y  S  E  N  L  S  F  C  S  F  P  W  L  P  F  S  H  S  L  S  S  P  *  S  S  S  S  L  F  P  P  P  L  A  T  I  P  P  H  P  R  Q  F  H  F  R  S  V  V  L  V  R  L  H  G  T  H  Q  H  V  N  L  Y  *  R  I  P  V  T  Y  R  L  S  *  R  R  R  *  S  S  N  R  L  L  K  Y  H  R  R  T  T  I  R  R  K  R  W  C  R  Q  L  *  M  R  R  Q  G  I  I  R  T  V  R  T  L  G  K  C  V  W  R  C  S  G  M  R  S  I  G  S  G  *  R  V  R  Q  *  L  T  A  D  T  R  A  L  V  H  G  *  A  P  L  W  C  I  N  T  T  A  G  P  L  *  S  T  L  M  A  P  P  R  Y  L  K  R  C  R  L  S  I  P  *  S  D  T  A  A  M  H  W  G  *  W  *  I  S  T  F  T  V  L  I  P  G  H  G  P  Y  P  K  Q  N  E  T  G  S  G  K  V  R  V  R  V  Q  A  G  R   </first_frame>
            <second_frame>  I  P  K  I  *  A  S  V  H  F  H  G  F  L  F  H  T  H  Y  L  L  L  N  P  L  L  L  Y  F  L  R  R  S  P  P  F  L  H  I  P  V  N  F  T  S  D  P  W  C  L  *  G  F  T  G  P  T  N  M  *  I  C  I  D  G  F  R  L  L  T  V  *  A  N  D  V  V  D  H  P  I  G  C  *  S  I  I  E  E  Q  R  *  G  E  R  D  G  A  G  N  Y  R  C  V  D  R  E  *  S  E  P  Y  G  R  W  E  S  V  Y  G  G  A  R  V  C  G  V  S  G  R  V  N  G  S  G  S  D  *  R  R  I  Q  E  R  S  C  M  D  E  L  R  Y  G  V  S  I  R  L  L  V  R  F  E  V  R  *  W  H  L  P  G  I  *  N  D  V  V  Y  Q  F  L  D  R  I  Q  Q  Q  C  I  G  D  D  G  E  F  R  P  L  R  C  *  Y  R  V  M  D  R  T  Q  N  R  T  R  R  V  L  G  R  F  G  F  G  F  K  R  V  G  </second_frame>
            <third_frame>   F  R  K  F  K  L  L  F  I  S  M  A  S  F  F  T  L  T  I  F  S  L  I  L  F  F  S  I  S  S  A  A  R  H  H  S  S  T  S  P  S  I  S  L  Q  I  R  G  A  C  K  A  S  R  D  P  P  T  C  E  S  V  L  T  D  S  G  Y  L  P  S  E  L  T  T  S  L  I  I  Q  S  A  V  K  V  S  S  K  N  N  D  K  A  K  E  M  V  Q  A  I  I  D  A  S  T  G  N  N  Q  N  R  T  D  A  G  K  V  C  M  E  V  L  G  Y  A  E  Y  R  V  G  L  T  G  Q  A  V  I  N  G  G  Y  K  S  A  R  A  W  M  S  S  V  M  V  Y  Q  Y  D  C  W  S  A  L  K  Y  V  N  G  T  S  Q  V  S  K  T  M  S  F  I  N  S  L  I  G  Y  S  S  N  A  L  G  M  M  V  N  F  D  L  Y  G  A  D  T  G  S  W  T  V  P  K  T  E  R  D  G  F  W  E  G  S  G  S  G  S  S  G  S  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9917" stop="9237"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRKFKLLFISMASFFTLTIFSLILFFSISSAARHHSSTSPSISLQIRGACKASRDPPTCESVLTDSGYLPSELTTSLIIQSAVKVSSKNNDKAKEMVQAIIDASTGNNQNRTDAGKVCMEVLGYAEYRVGLTGQAVINGGYKSARAWMSSVMVYQYDCWSALKYVNGTSQVSKTMSFINSLIGYSSNALGMMVNFDLYGADTGSWTVPKTERDGFWEGSGSGSSGSG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40296" PGL_stop="40696"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40296" e_stop="40696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40296" e_stop="40696" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40296" stop="40696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATTTGGCCTAGTTTTCCTCTTCAAAACCCTCAACACCATCACCTTCCCTCCTCCTCAACCCAACAACAACAACAACAACAAGAAGAAGTAGTAGTTGTCCCTTTTGATCATGTGTTAAACAACCATGTTCAAACCCTAATAGAGGATCAAGAACACGATGATCAAGACGAAGATGAAGAGGAAGAAGAAGAGCTAGGAGCCATGAAAGAAATGATGTTCAAAATTGCATCTATGCAACCAGTAGACATTGATCCATCCACTATACGAAAACCTAAAAGGCGTAACGTACGTATAAGCAATGATCCACAAAGCGTAGCAGCCAGGCTACGCCGCGAAAGGATAAGTGAAAAAATCAGAATCTTGCAAAGATTAGTCCCTGGTGGAACAAAAATGGACACT</gDNA_template>
            <first_frame> L  F  G  L  V  F  L  F  K  T  L  N  T  I  T  F  P  P  P  Q  P  N  N  N  N  N  N  K  K  K  *  *  L  S  L  L  I  M  C  *  T  T  M  F  K  P  *  *  R  I  K  N  T  M  I  K  T  K  M  K  R  K  K  K  S  *  E  P  *  K  K  *  C  S  K  L  H  L  C  N  Q  *  T  L  I  H  P  L  Y  E  N  L  K  G  V  T  Y  V  *  A  M  I  H  K  A  *  Q  P  G  Y  A  A  K  G  *  V  K  K  S  E  S  C  K  D  *  S  L  V  E  Q  K  W  T   </first_frame>
            <second_frame>  Y  L  A  *  F  S  S  S  K  P  S  T  P  S  P  S  L  L  L  N  P  T  T  T  T  T  T  R  R  S  S  S  C  P  F  *  S  C  V  K  Q  P  C  S  N  P  N  R  G  S  R  T  R  *  S  R  R  R  *  R  G  R  R  R  A  R  S  H  E  R  N  D  V  Q  N  C  I  Y  A  T  S  R  H  *  S  I  H  Y  T  K  T  *  K  A  *  R  T  Y  K  Q  *  S  T  K  R  S  S  Q  A  T  P  R  K  D  K  *  K  N  Q  N  L  A  K  I  S  P  W  W  N  K  N  G  H  </second_frame>
            <third_frame>   I  W  P  S  F  P  L  Q  N  P  Q  H  H  H  L  P  S  S  S  T  Q  Q  Q  Q  Q  Q  Q  E  E  V  V  V  V  P  F  D  H  V  L  N  N  H  V  Q  T  L  I  E  D  Q  E  H  D  D  Q  D  E  D  E  E  E  E  E  E  L  G  A  M  K  E  M  M  F  K  I  A  S  M  Q  P  V  D  I  D  P  S  T  I  R  K  P  K  R  R  N  V  R  I  S  N  D  P  Q  S  V  A  A  R  L  R  R  E  R  I  S  E  K  I  R  I  L  Q  R  L  V  P  G  G  T  K  M  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40298" stop="40696"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWPSFPLQNPQHHHLPSSSTQQQQQQQEEVVVVPFDHVLNNHVQTLIEDQEHDDQDEDEEEEEELGAMKEMMFKIASMQPVDIDPSTIRKPKRRNVRISNDPQSVAARLRRERISEKIRILQRLVPGGTKMDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="56435" PGL_stop="52368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56435" e_stop="56216"/>
            <exon e_start="54876" e_stop="54765"/>
            <exon e_start="53680" e_stop="53654"/>
            <exon e_start="53573" e_stop="53501"/>
            <exon e_start="52729" e_stop="52626"/>
            <exon e_start="52541" e_stop="52368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="0.991"/>
          <exon-intron don_prob="0.952" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.757" acc_prob="0.486" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.230" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="56435" e_stop="56216" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56215" i_stop="54877" i_length="1339"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54876" e_stop="54765" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54764" i_stop="53681" i_length="1084"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53680" e_stop="53654" e_length="27"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.882">
            <gDNA_intron_boundary i_start="53653" i_stop="53574" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53573" e_stop="53501" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.757" acc_prob="0.486">
            <gDNA_intron_boundary i_start="53500" i_stop="52730" i_length="771"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52729" e_stop="52626" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.932" acc_prob="0.230">
            <gDNA_intron_boundary i_start="52625" i_stop="52542" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52541" e_stop="52368" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56435" stop="56216"/>
              <exon start="54876" stop="54765"/>
              <exon start="53680" stop="53654"/>
              <exon start="53573" stop="53501"/>
              <exon start="52729" stop="52626"/>
              <exon start="52541" stop="52368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACAAAATCACCATTTCTCTAAACCCTATTTTCTTCTTCTTCTCTTGCATTTTTCCAAAATCTCAAAAATTAGTAAGAAGAGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAG : ATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAG : GAGAGCATTTGGCCTCTGGTGCCGATG : GCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAAGTCCTAAAGACGTTATC : ATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAG : GTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCA</gDNA_template>
            <first_frame> Q  Q  N  H  H  F  S  K  P  Y  F  L  L  L  L  L  H  F  S  K  I  S  K  I  S  K  K  R  D  Q  E  A  T  N  K  D  E  G  W  Y  S  S  D  Q  L  A  R  Q  *  A  S  F  V  P  *  F  S  P  P  H  R  R  Y  C  Y  W  W  R  R  L  *  Y  Q   : D  V  G  D  *  F  *  R  K  *  K  E  S  A  F  S  Y  I  P  G  *  P  F  L  P  *  W  C  C  E  C  S  S  V  L  P  F  R :   R  A  F  G  L  W  C  R  W :   R  R  A  H  H  L  E  A  T  F  F  R  *  Q  Q  N  M  E  S  P  K  D  V  I  :  I  S  P  E  G  C  I  G  L  A  V  V  C  *  W  F  F  F  N  F  W  F  C  *  *  F  M  H  R  M  G  C  Q  Q  R :   F  C  S  S  D  F  G  C  S  F  A  L  C  A  R  C  G  M  G  S  I  V  Q  V  Y  C  L  T  Q  F  R  *  I  L  P  D  L  Q  Q  *  T  I  *  N  K  R  S  *  E  V  E  F  C  V  S  T  C   </first_frame>
            <second_frame>  N  K  I  T  I  S  L  N  P  I  F  F  F  F  S  C  I  F  P  K  S  Q  K  L  V  R  R  E  I  R  K  Q  Q  I  R  M  K  G  G  T  V  Q  I  N  W  H  D  S  K  P  V  L  C  L  D  F  H  H  L  T  G  V  I  A  T  G  G  A  D  Y  D  I  K  :  M  W  V  I  D  S  E  E  N  E  K  K  A  P  S  V  T  Y  Q  A  S  L  S  Y  H  S  G  A  V  N  A  L  R  F  S  P  S   : G  E  H  L  A  S  G  A  D   : G  G  E  L  I  I  W  K  L  H  S  S  D  D  S  K  T  W  K  V  L  K  T  L  S :   F  H  R  K  D  V  L  D  L  Q  W  S  A  D  G  S  F  L  I  S  G  S  V  D  N  S  C  I  V  W  D  V  N  K   : G  S  V  H  Q  I  L  D  A  H  L  H  Y  V  Q  G  V  A  W  D  P  L  S  K  Y  T  A  S  L  S  S  D  R  S  C  R  I  Y  S  N  R  P  S  K  T  K  G  V  E  K  L  N  F  V  C  Q  H  V  </second_frame>
            <third_frame>   T  K  S  P  F  L  *  T  L  F  S  S  S  S  L  A  F  F  Q  N  L  K  N  *  *  E  E  R  S  G  S  N  K  *  G  *  R  V  V  Q  F  R  S  I  G  T  T  V  S  Q  F  C  A  L  I  F  T  T  S  P  A  L  L  L  L  V  A  P  T  M  I  S  R :   C  G  *  L  I  L  K  K  M  K  R  K  R  L  Q  L  H  T  R  L  A  F  L  T  I  V  V  L  *  M  L  F  G  S  P  L  Q  :  E  S  I  W  P  L  V  P  M  :  A  A  S  S  S  F  G  S  Y  I  L  Q  M  T  A  K  H  G  K  S  *  R  R  Y   : H  F  T  G  R  M  Y  W  T  C  S  G  L  L  M  V  L  F  *  F  L  V  L  L  I  I  H  A  S  Y  G  M  S  T  K  :  V  L  F  I  R  F  W  M  L  I  C  T  M  C  K  V  W  H  G  I  H  C  P  S  I  L  P  H  S  V  Q  I  D  L  A  G  F  T  A  I  D  H  L  K  Q  K  E  L  R  S  *  I  L  C  V  N  M  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56434" stop="56216"/>
                    <exon start="54876" stop="54765"/>
                    <exon start="53680" stop="53654"/>
                    <exon start="53573" stop="53501"/>
                    <exon start="52729" stop="52626"/>
                    <exon start="52541" stop="52369"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKITISLNPIFFFFSCIFPKSQKLVRREIRKQQIRMKGGTVQINWHDSKPVLCLDFHHLTGVIATGGADYDIKMWVIDSEENEKKAPSVTYQASLSYHSGAVNALRFSPSGEHLASGADGGELIIWKLHSSDDSKTWKVLKTLSFHRKDVLDLQWSADGSFLISGSVDNSCIVWDVNKGSVHQILDAHLHYVQGVAWDPLSKYTASLSSDRSCRIYSNRPSKTKGVEKLNFVCQHV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="62525" PGL_stop="56802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62525" e_stop="62424"/>
            <exon e_start="59981" e_stop="59893"/>
            <exon e_start="59235" e_stop="58999"/>
            <exon e_start="58917" e_stop="58813"/>
            <exon e_start="57831" e_stop="56802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.550" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62525" e_stop="62424" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62423" i_stop="59982" i_length="2442"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59981" e_stop="59893" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.550">
            <gDNA_intron_boundary i_start="59892" i_stop="59236" i_length="657"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59235" e_stop="58999" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.980">
            <gDNA_intron_boundary i_start="58998" i_stop="58918" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58917" e_stop="58813" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58812" i_stop="57832" i_length="981"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57831" e_stop="56802" e_length="1030"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62525" stop="62424"/>
              <exon start="59981" stop="59893"/>
              <exon start="59235" stop="58999"/>
              <exon start="58917" stop="58813"/>
              <exon start="57831" stop="56802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320601" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTACCCAAGCGTTACTTGTAATACGAAAGAAACAAAACCCTACACCAGAAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAG : AATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAG : GATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAG : GAAATGAAAAGTCTTCTGATGGAAGTAAGTTAGGGAATGGTCATATGCAGTCAAGCACTTACTATTTTTCCCAAGATGATGATGGCTGCTACAATTGCAACACGG : AAGCTGGAGGATTAGGAATTACAAAGCAGCAGTATAATGGGTCTGAGCCTGAAATGGTGCTCCCTCTGGTGGCAGTTCCTGCCATCGGATTCAATAAAGAGAATGGTGGGGTTTGGTCAACCTCTCCTGACCGTCTTGAACTACCACAGAAACCATTTCATCGCTCTAACAGCTCTGAGTCACCATGTGTCTCTGAATCCGGTTCTGACATATACAGCAAGCGAGAAGTGATACAAAAGCTGAGGCTACAGTTAAAGAGAAGGGACGAAACAATATTAGAGATGCAAGAACAGATTGTAGAGTTGCAAGCTTCTCTCAATGCTCAGATGTCGCATTCTGCTCATCAGCAGTCATTGCTGGATGCTGCCAACAGGGATCTGTTTGATTCGGAGAGAGAGATACAGAGGCTGAGGAAGGCTATTGCAGATCATTGTGTTGGACAAGTAGGTTCGTGCGATAAGCCCCCAACAGTACCTGTATGGCCAGCTGAAGTCCGTTATGGTCATCATACTAACGGCCACCTTGAAGTTGATAGGAATTCAGATACTTCAGAGAAGGGAAGAGGAGATGGAGAAAGGTTTGAAATGCTGAAGCGCGAAAAAGATGAGTTGAAAGAAGTGATCGAAGGGAAGGATTATCTGATCAAGAACTACAAGGAGCAAACCGTCGAGCTTTCAATCAAGGTCAAGGAACTGCAACAGAGACTGGATGCTCAGCTCCCAAACATTTTGTAGCCGCGTCGTTAGAGTTGTGTATTCTTTTGTTTGCTTCCCATTCTCTTGATTGATTTTAAAGCTTCATGACATGGGACTTGCTATTTTCTCAGTTTTATCTGAGTTTTTTCTCCCCTCCCCCTCCCTCCACCTTTCTGTTTTGTGTTCATCATGTCGACGAACCGATTTTCGATATACCTTCTCTTAGTATTAGTAGATTGAGTTTGAGGATTGCCCTCCTGTGTTGCTGAACATGTAAAAATGGTTCATCATGCATTGAAAAATTTTCATCTATATATTCAAGAGACTTTTGCTCA</gDNA_template>
            <first_frame> L  Y  P  S  V  T  C  N  T  K  E  T  K  P  Y  T  R  N  I  F  Y  Q  F  L  V  D  R  C  I  F  L  I  N  Q  :  N  T  L  F  P  V  G  S  C  C  H  C  S  V  T  V  I  R  L  M  K  V  W  H  Q  H  L  T  *  R :   I  T  F  M  I  C  S  L  S  I  Y  Y  F  S  D  Y  R  N  E  A  K  N  Q  R  G  V  K  V  P  E  V  Q  W  C  S  E  *  G  S  *  L  G  H  N  C  R  *  C  V  I  K  Y  I  I  C  T  L  R  V  Q  A  E  A  G  A  *  F  K  T  A  K  Q  D  D  Q  Q  F  E  R :   K  *  K  V  F  *  W  K  *  V  R  E  W  S  Y  A  V  K  H  L  L  F  F  P  R  *  *  W  L  L  Q  L  Q  H  G :   S  W  R  I  R  N  Y  K  A  A  V  *  W  V  *  A  *  N  G  A  P  S  G  G  S  S  C  H  R  I  Q  *  R  E  W  W  G  L  V  N  L  S  *  P  S  *  T  T  T  E  T  I  S  S  L  *  Q  L  *  V  T  M  C  L  *  I  R  F  *  H  I  Q  Q  A  R  S  D  T  K  A  E  A  T  V  K  E  K  G  R  N  N  I  R  D  A  R  T  D  C  R  V  A  S  F  S  Q  C  S  D  V  A  F  C  S  S  A  V  I  A  G  C  C  Q  Q  G  S  V  *  F  G  E  R  D  T  E  A  E  E  G  Y  C  R  S  L  C  W  T  S  R  F  V  R  *  A  P  N  S  T  C  M  A  S  *  S  P  L  W  S  S  Y  *  R  P  P  *  S  *  *  E  F  R  Y  F  R  E  G  K  R  R  W  R  K  V  *  N  A  E  A  R  K  R  *  V  E  R  S  D  R  R  E  G  L  S  D  Q  E  L  Q  G  A  N  R  R  A  F  N  Q  G  Q  G  T  A  T  E  T  G  C  S  A  P  K  H  F  V  A  A  S  L  E  L  C  I  L  L  F  A  S  H  S  L  D  *  F  *  S  F  M  T  W  D  L  L  F  S  Q  F  Y  L  S  F  F  S  P  P  P  P  S  T  F  L  F  C  V  H  H  V  D  E  P  I  F  D  I  P  S  L  S  I  S  R  L  S  L  R  I  A  L  L  C  C  *  T  C  K  N  G  S  S  C  I  E  K  F  S  S  I  Y  S  R  D  F  C  S </first_frame>
            <second_frame>  F  T  Q  A  L  L  V  I  R  K  K  Q  N  P  T  P  E  T  S  F  I  S  S  W  S  I  D  A  S  S  *  L  I  R :   I  H  Y  F  L  W  D  L  A  V  I  V  L  L  L  *  S  D  S  *  R  C  G  I  S  T  *  R  E   : G  L  L  S  *  S  A  A  S  P  S  T  T  S  V  T  I  E  M  K  P  R  T  N  G  V  S  R  S  Q  K  S  N  G  V  Q  S  E  G  P  N  W  V  I  I  A  G  S  A  L  L  S  T  L  S  V  R  L  G  Y  K  L  K  Q  V  L  D  S  R  Q  P  N  K  T  T  S  S  L  K   : G  N  E  K  S  S  D  G  S  K  L  G  N  G  H  M  Q  S  S  T  Y  Y  F  S  Q  D  D  D  G  C  Y  N  C  N  T   : E  A  G  G  L  G  I  T  K  Q  Q  Y  N  G  S  E  P  E  M  V  L  P  L  V  A  V  P  A  I  G  F  N  K  E  N  G  G  V  W  S  T  S  P  D  R  L  E  L  P  Q  K  P  F  H  R  S  N  S  S  E  S  P  C  V  S  E  S  G  S  D  I  Y  S  K  R  E  V  I  Q  K  L  R  L  Q  L  K  R  R  D  E  T  I  L  E  M  Q  E  Q  I  V  E  L  Q  A  S  L  N  A  Q  M  S  H  S  A  H  Q  Q  S  L  L  D  A  A  N  R  D  L  F  D  S  E  R  E  I  Q  R  L  R  K  A  I  A  D  H  C  V  G  Q  V  G  S  C  D  K  P  P  T  V  P  V  W  P  A  E  V  R  Y  G  H  H  T  N  G  H  L  E  V  D  R  N  S  D  T  S  E  K  G  R  G  D  G  E  R  F  E  M  L  K  R  E  K  D  E  L  K  E  V  I  E  G  K  D  Y  L  I  K  N  Y  K  E  Q  T  V  E  L  S  I  K  V  K  E  L  Q  Q  R  L  D  A  Q  L  P  N  I  L  *  P  R  R  *  S  C  V  F  F  C  L  L  P  I  L  L  I  D  F  K  A  S  *  H  G  T  C  Y  F  L  S  F  I  *  V  F  S  P  L  P  L  P  P  P  F  C  F  V  F  I  M  S  T  N  R  F  S  I  Y  L  L  L  V  L  V  D  *  V  *  G  L  P  S  C  V  A  E  H  V  K  M  V  H  H  A  L  K  N  F  H  L  Y  I  Q  E  T  F  A   </second_frame>
            <third_frame>   L  P  K  R  Y  L  *  Y  E  R  N  K  T  L  H  Q  K  H  L  L  S  V  L  G  R  *  M  H  L  L  D  *  S   : E  Y  I  I  S  C  G  I  L  L  S  L  F  C  Y  C  N  Q  T  H  E  G  V  A  S  A  L  D  V  K  :  D  Y  F  H  D  L  Q  P  L  H  L  L  L  Q  *  L  *  K  *  S  Q  E  P  T  G  C  Q  G  P  R  S  P  M  V  F  R  V  R  V  L  T  G  S  *  L  Q  V  V  R  Y  *  V  H  Y  L  Y  A  *  G  T  S  *  S  R  C  L  I  Q  D  S  Q  T  R  R  P  A  V  *  K  :  E  M  K  S  L  L  M  E  V  S  *  G  M  V  I  C  S  Q  A  L  T  I  F  P  K  M  M  M  A  A  T  I  A  T  R  :  K  L  E  D  *  E  L  Q  S  S  S  I  M  G  L  S  L  K  W  C  S  L  W  W  Q  F  L  P  S  D  S  I  K  R  M  V  G  F  G  Q  P  L  L  T  V  L  N  Y  H  R  N  H  F  I  A  L  T  A  L  S  H  H  V  S  L  N  P  V  L  T  Y  T  A  S  E  K  *  Y  K  S  *  G  Y  S  *  R  E  G  T  K  Q  Y  *  R  C  K  N  R  L  *  S  C  K  L  L  S  M  L  R  C  R  I  L  L  I  S  S  H  C  W  M  L  P  T  G  I  C  L  I  R  R  E  R  Y  R  G  *  G  R  L  L  Q  I  I  V  L  D  K  *  V  R  A  I  S  P  Q  Q  Y  L  Y  G  Q  L  K  S  V  M  V  I  I  L  T  A  T  L  K  L  I  G  I  Q  I  L  Q  R  R  E  E  E  M  E  K  G  L  K  C  *  S  A  K  K  M  S  *  K  K  *  S  K  G  R  I  I  *  S  R  T  T  R  S  K  P  S  S  F  Q  S  R  S  R  N  C  N  R  D  W  M  L  S  S  Q  T  F  C  S  R  V  V  R  V  V  Y  S  F  V  C  F  P  F  S  *  L  I  L  K  L  H  D  M  G  L  A  I  F  S  V  L  S  E  F  F  L  P  S  P  S  L  H  L  S  V  L  C  S  S  C  R  R  T  D  F  R  Y  T  F  S  *  Y  *  *  I  E  F  E  D  C  P  P  V  L  L  N  M  *  K  W  F  I  M  H  *  K  I  F  I  Y  I  F  K  R  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59221" stop="58999"/>
                    <exon start="58917" stop="58813"/>
                    <exon start="57831" stop="57098"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAASPSTTSVTIEMKPRTNGVSRSQKSNGVQSEGPNWVIIAGSALLSTLSVRLGYKLKQVLDSRQPNKTTSSLKGNEKSSDGSKLGNGHMQSSTYYFSQDDDGCYNCNTEAGGLGITKQQYNGSEPEMVLPLVAVPAIGFNKENGGVWSTSPDRLELPQKPFHRSNSSESPCVSESGSDIYSKREVIQKLRLQLKRRDETILEMQEQIVELQASLNAQMSHSAHQQSLLDAANRDLFDSEREIQRLRKAIADHCVGQVGSCDKPPTVPVWPAEVRYGHHTNGHLEVDRNSDTSEKGRGDGERFEMLKREKDELKEVIEGKDYLIKNYKEQTVELSIKVKELQQRLDAQLPNIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="66303" PGL_stop="65516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66303" e_stop="65516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="66303" e_stop="65516" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66303" stop="65516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332626" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGAAAAAAATATATATATTTGAAAAGCAAAGTCAATATGTCTTGTAATTTCCACTTCTTATTGATTCTTGTTTTCTTGATTTCACTTCATGAATTACCAACAATTTCCACCACCTCATCATCAATTGATTTGATTCAAAAAACATGTAAAAACACAAAATACTATGATCTTTGTGTATCATCTCTCAAATCAGATTCCACAAGCCTCAAAGCAGACACAAAAGGCTTAGCAACTATCATGGTCAAAATTGGAATGGTCAATGCCACAGCCACAAACAATTTTCTTTCATCACATGAATTAGTACTTAACACTACTAATAATTACACAAATAATGATTTGGTATTAATGAAGAAACTCATCAAAGATTGTGCTGATAAATATGCATTAGCTACTAATGCACTTCAAGATTCACTTCAAGATTTGAATAATGAAGTTTATGACTATGCTTACATGCATGTTATGGCGGCTGCGGATTATCCTAACGTTTGTCATAATGGATTTAAGAGGAATCCAAGATTGGATTATCCAACTCAACTTGCTATTAGGGAAGATGGATTTAAACATATTTGTGATGTGGTTTTAGGTATTCTTGATGCTCTTGGTTGGTGAAAAAAAATAATCCCCTTTTTTTTTTTTTATGTTATATGATATGTAAACTTTTTCTATTATTATATATGTGTTTAGTTTGTCTTTATCTATGTGTAGATTTAAAGAAATGAGGATTTGTATGTTGCCTTTAATTGTTCACTCTTTTTATGTATTGAGAGTTTACCTTTTTATGCAAG</gDNA_template>
            <first_frame> E  G  K  K  Y  I  Y  L  K  S  K  V  N  M  S  C  N  F  H  F  L  L  I  L  V  F  L  I  S  L  H  E  L  P  T  I  S  T  T  S  S  S  I  D  L  I  Q  K  T  C  K  N  T  K  Y  Y  D  L  C  V  S  S  L  K  S  D  S  T  S  L  K  A  D  T  K  G  L  A  T  I  M  V  K  I  G  M  V  N  A  T  A  T  N  N  F  L  S  S  H  E  L  V  L  N  T  T  N  N  Y  T  N  N  D  L  V  L  M  K  K  L  I  K  D  C  A  D  K  Y  A  L  A  T  N  A  L  Q  D  S  L  Q  D  L  N  N  E  V  Y  D  Y  A  Y  M  H  V  M  A  A  A  D  Y  P  N  V  C  H  N  G  F  K  R  N  P  R  L  D  Y  P  T  Q  L  A  I  R  E  D  G  F  K  H  I  C  D  V  V  L  G  I  L  D  A  L  G  W  *  K  K  I  I  P  F  F  F  F  Y  V  I  *  Y  V  N  F  F  Y  Y  Y  I  C  V  *  F  V  F  I  Y  V  *  I  *  R  N  E  D  L  Y  V  A  F  N  C  S  L  F  L  C  I  E  S  L  P  F  Y  A   </first_frame>
            <second_frame>  K  E  K  N  I  Y  I  *  K  A  K  S  I  C  L  V  I  S  T  S  Y  *  F  L  F  S  *  F  H  F  M  N  Y  Q  Q  F  P  P  P  H  H  Q  L  I  *  F  K  K  H  V  K  T  Q  N  T  M  I  F  V  Y  H  L  S  N  Q  I  P  Q  A  S  K  Q  T  Q  K  A  *  Q  L  S  W  S  K  L  E  W  S  M  P  Q  P  Q  T  I  F  F  H  H  M  N  *  Y  L  T  L  L  I  I  T  Q  I  M  I  W  Y  *  *  R  N  S  S  K  I  V  L  I  N  M  H  *  L  L  M  H  F  K  I  H  F  K  I  *  I  M  K  F  M  T  M  L  T  C  M  L  W  R  L  R  I  I  L  T  F  V  I  M  D  L  R  G  I  Q  D  W  I  I  Q  L  N  L  L  L  G  K  M  D  L  N  I  F  V  M  W  F  *  V  F  L  M  L  L  V  G  E  K  K  *  S  P  F  F  F  F  M  L  Y  D  M  *  T  F  S  I  I  I  Y  V  F  S  L  S  L  S  M  C  R  F  K  E  M  R  I  C  M  L  P  L  I  V  H  S  F  Y  V  L  R  V  Y  L  F  M  Q  </second_frame>
            <third_frame>   R  K  K  I  Y  I  F  E  K  Q  S  Q  Y  V  L  *  F  P  L  L  I  D  S  C  F  L  D  F  T  S  *  I  T  N  N  F  H  H  L  I  I  N  *  F  D  S  K  N  M  *  K  H  K  I  L  *  S  L  C  I  I  S  Q  I  R  F  H  K  P  Q  S  R  H  K  R  L  S  N  Y  H  G  Q  N  W  N  G  Q  C  H  S  H  K  Q  F  S  F  I  T  *  I  S  T  *  H  Y  *  *  L  H  K  *  *  F  G  I  N  E  E  T  H  Q  R  L  C  *  *  I  C  I  S  Y  *  C  T  S  R  F  T  S  R  F  E  *  *  S  L  *  L  C  L  H  A  C  Y  G  G  C  G  L  S  *  R  L  S  *  W  I  *  E  E  S  K  I  G  L  S  N  S  T  C  Y  *  G  R  W  I  *  T  Y  L  *  C  G  F  R  Y  S  *  C  S  W  L  V  K  K  N  N  P  L  F  F  F  L  C  Y  M  I  C  K  L  F  L  L  L  Y  M  C  L  V  C  L  Y  L  C  V  D  L  K  K  *  G  F  V  C  C  L  *  L  F  T  L  F  M  Y  *  E  F  T  F  L  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66303" stop="65692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGKKYIYLKSKVNMSCNFHFLLILVFLISLHELPTISTTSSSIDLIQKTCKNTKYYDLCVSSLKSDSTSLKADTKGLATIMVKIGMVNATATNNFLSSHELVLNTTNNYTNNDLVLMKKLIKDCADKYALATNALQDSLQDLNNEVYDYAYMHVMAAADYPNVCHNGFKRNPRLDYPTQLAIREDGFKHICDVVLGILDALGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="73460" PGL_stop="74185"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73460" e_stop="73670"/>
            <exon e_start="73756" e_stop="73957"/>
            <exon e_start="74045" e_stop="74185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.965"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73460" e_stop="73670" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73671" i_stop="73755" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="73756" e_stop="73957" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73958" i_stop="74044" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74045" e_stop="74185" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73460" stop="73670"/>
              <exon start="73756" stop="73957"/>
              <exon start="74045" stop="74185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329605" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAG : TGGTCCATACGCGAAAATAGAGATGAGATCAGGAGAGATGGATGGATATGATGCTGTTTTTATTAGTCCTCATAAGTTTCTTGGAGGTCCAGGCACACCTGGAGTTCTTGTAATGAACAAAGCACTCTATAGATTGAGGACTTCGCCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCCTACAATGAAAAG : GACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTAC</gDNA_template>
            <first_frame> L  R  L  *  R  L  D  W  T  K  T  G  *  *  I  W  K  H  *  G  I  S  L  S  C  I  S  L  R  I  D  H  C  W  V  R  S  Q  L  V  V  M  L  L  G  L  I  L  I  Q  E  P  S  L  V  Y  F  I  K  M  E  L  L  L  A  L  I  S  Q  Q   : V  V  H  T  R  K  *  R  *  D  Q  E  R  W  M  D  M  M  L  F  L  L  V  L  I  S  F  L  E  V  Q  A  H  L  E  F  L  *  *  T  K  H  S  I  D  *  G  L  R  L  H  L  L  V  E  V  V  L  L  I  L  L  T  P  T  M  K  R :   T  H  F  M  W  R  I  L  K  K  G  K  T  L  V  H  R  Q  S  F  R  K  *  E  Q  H  L  H  F  G  *  K  S  S  *  V  I  K  *  L  K  E  W  N  T  L   </first_frame>
            <second_frame>  *  G  C  R  D  W  I  G  R  K  R  A  S  R  Y  G  S  I  E  G  S  A  *  V  V  *  V  Y  E  *  T  I  V  G  F  V  L  S  L  *  *  C  Y  W  D  L  F  *  Y  K  S  H  R  S  F  T  S  *  K  W  S  F  C  L  L  *  F  R  S  K  :  W  S  I  R  E  N  R  D  E  I  R  R  D  G  W  I  *  C  C  F  Y  *  S  S  *  V  S  W  R  S  R  H  T  W  S  S  C  N  E  Q  S  T  L  *  I  E  D  F  A  S  I  Y  L  W  R  W  Y  C  *  F  C  *  P  L  Q  *  K   : G  H  T  L  C  G  E  Y  *  R  K  G  R  R  W  Y  T  A  N  H  S  E  S  E  N  S  T  C  I  L  G  E  R  V  H  K  S  *  S  N  *  K  N  G  T  H  L  </second_frame>
            <third_frame>   E  V  V  E  I  G  L  D  E  N  G  L  V  D  M  E  A  L  R  D  Q  L  E  L  Y  K  S  T  N  R  P  L  L  G  S  F  S  A  C  S  N  V  T  G  T  Y  S  D  T  R  A  I  A  R  L  L  H  K  N  G  A  F  A  C  F  D  F  A  A  S :   G  P  Y  A  K  I  E  M  R  S  G  E  M  D  G  Y  D  A  V  F  I  S  P  H  K  F  L  G  G  P  G  T  P  G  V  L  V  M  N  K  A  L  Y  R  L  R  T  S  P  P  S  T  C  G  G  G  T  V  D  F  V  N  P  Y  N  E  K  :  D  T  L  Y  V  E  N  I  E  E  R  E  D  A  G  T  P  P  I  I  Q  K  V  R  T  A  L  A  F  W  V  K  E  F  I  S  H  K  V  I  E  R  M  E  H  T  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73462" stop="73670"/>
                    <exon start="73756" stop="73957"/>
                    <exon start="74045" stop="74185"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVVEIGLDENGLVDMEALRDQLELYKSTNRPLLGSFSACSNVTGTYSDTRAIARLLHKNGAFACFDFAASGPYAKIEMRSGEMDGYDAVFISPHKFLGGPGTPGVLVMNKALYRLRTSPPSTCGGGTVDFVNPYNEKDTLYVENIEEREDAGTPPIIQKVRTALAFWVKEFISHKVIERMEHTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="75901" PGL_stop="75192"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75901" e_stop="75893"/>
            <exon e_start="75811" e_stop="75192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75901" e_stop="75893" e_length="9"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75892" i_stop="75812" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="75811" e_stop="75192" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75901" stop="75893"/>
              <exon start="75811" stop="75192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328084" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGAAATG : GGCTATACTGGAGTTAAGCCGGGATGGACAAGGATAAGCTTTCCCTACTACATGTCGAAAGAAGAATTTGAGTTCATTCTAGCAGCATTAGAATTCATATCCATTTATGGACAAAGGTTCCTTCCTTTATACAATTTCAATTGGAAGAGTGGTGCTTGGACTTTCAAAAAGAAAGCTTTGAAAGAGACGCTTACGAGAGGGATGGATCACAATTGCAACTTTTGTGGCTCACCAATGATGAAGGAGTTGAACTTAGGTGGTGCCAATACTTGCCATGATAACACAAAAGAAGGATCATGCACTAACAGTAACAAAGAAGGCATTATTTATAAGTACGTAAAGTATCTTGAGACAGCCAAGCGCGTAGCTAGCCTCCTTCCTAAATTCCCACAGCAGAGACCAATACCTGAAGAACTAGACACTAATCTTGTGTCCTTTAGAGCCTGATAAAAATATGTATATGAAAATAAACTTTGTCCAATGTCTTGTTGGGCAAATTCGATCGTTTGATATGTAATAATAACTTCAAAGTCTATGTATTCCCTTCGTTTTGTTTTTACTTGTTCAGTATGTATTTTGTATTTTCTTTAAGAAAAACATAAAGTATTTTTTGATTTCTC</gDNA_template>
            <first_frame> I  E  M  :  G  Y  T  G  V  K  P  G  W  T  R  I  S  F  P  Y  Y  M  S  K  E  E  F  E  F  I  L  A  A  L  E  F  I  S  I  Y  G  Q  R  F  L  P  L  Y  N  F  N  W  K  S  G  A  W  T  F  K  K  K  A  L  K  E  T  L  T  R  G  M  D  H  N  C  N  F  C  G  S  P  M  M  K  E  L  N  L  G  G  A  N  T  C  H  D  N  T  K  E  G  S  C  T  N  S  N  K  E  G  I  I  Y  K  Y  V  K  Y  L  E  T  A  K  R  V  A  S  L  L  P  K  F  P  Q  Q  R  P  I  P  E  E  L  D  T  N  L  V  S  F  R  A  *  *  K  Y  V  Y  E  N  K  L  C  P  M  S  C  W  A  N  S  I  V  *  Y  V  I  I  T  S  K  S  M  Y  S  L  R  F  V  F  T  C  S  V  C  I  L  Y  F  L  *  E  K  H  K  V  F  F  D  F   </first_frame>
            <second_frame>  L  K  W :   A  I  L  E  L  S  R  D  G  Q  G  *  A  F  P  T  T  C  R  K  K  N  L  S  S  F  *  Q  H  *  N  S  Y  P  F  M  D  K  G  S  F  L  Y  T  I  S  I  G  R  V  V  L  G  L  S  K  R  K  L  *  K  R  R  L  R  E  G  W  I  T  I  A  T  F  V  A  H  Q  *  *  R  S  *  T  *  V  V  P  I  L  A  M  I  T  Q  K  K  D  H  A  L  T  V  T  K  K  A  L  F  I  S  T  *  S  I  L  R  Q  P  S  A  *  L  A  S  F  L  N  S  H  S  R  D  Q  Y  L  K  N  *  T  L  I  L  C  P  L  E  P  D  K  N  M  Y  M  K  I  N  F  V  Q  C  L  V  G  Q  I  R  S  F  D  M  *  *  *  L  Q  S  L  C  I  P  F  V  L  F  L  L  V  Q  Y  V  F  C  I  F  F  K  K  N  I  K  Y  F  L  I  S  </second_frame>
            <third_frame>   *  N   : G  L  Y  W  S  *  A  G  M  D  K  D  K  L  S  L  L  H  V  E  R  R  I  *  V  H  S  S  S  I  R  I  H  I  H  L  W  T  K  V  P  S  F  I  Q  F  Q  L  E  E  W  C  L  D  F  Q  K  E  S  F  E  R  D  A  Y  E  R  D  G  S  Q  L  Q  L  L  W  L  T  N  D  E  G  V  E  L  R  W  C  Q  Y  L  P  *  *  H  K  R  R  I  M  H  *  Q  *  Q  R  R  H  Y  L  *  V  R  K  V  S  *  D  S  Q  A  R  S  *  P  P  S  *  I  P  T  A  E  T  N  T  *  R  T  R  H  *  S  C  V  L  *  S  L  I  K  I  C  I  *  K  *  T  L  S  N  V  L  L  G  K  F  D  R  L  I  C  N  N  N  F  K  V  Y  V  F  P  S  F  C  F  Y  L  F  S  M  Y  F  V  F  S  L  R  K  T  *  S  I  F  *  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75901" stop="75893"/>
                    <exon start="75811" stop="75365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEMGYTGVKPGWTRISFPYYMSKEEFEFILAALEFISIYGQRFLPLYNFNWKSGAWTFKKKALKETLTRGMDHNCNFCGSPMMKELNLGGANTCHDNTKEGSCTNSNKEGIIYKYVKYLETAKRVASLLPKFPQQRPIPEELDTNLVSFRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="76953" PGL_stop="76229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76953" e_stop="76743"/>
            <exon e_start="76658" e_stop="76457"/>
            <exon e_start="76369" e_stop="76229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76953" e_stop="76743" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76742" i_stop="76659" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76658" e_stop="76457" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76456" i_stop="76370" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76369" e_stop="76229" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76953" stop="76743"/>
              <exon start="76658" stop="76457"/>
              <exon start="76369" stop="76229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329605" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAG : TGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAG : GACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTAC</gDNA_template>
            <first_frame> L  R  L  *  R  L  D  W  T  K  T  G  *  *  I  W  K  H  *  G  I  S  L  S  C  I  S  L  R  I  D  H  C  W  V  R  S  Q  L  V  V  M  L  L  G  L  I  L  I  Q  E  P  S  L  V  Y  F  I  K  M  E  L  L  L  A  L  I  S  Q  Q   : V  V  H  M  R  K  *  R  *  D  Q  E  R  S  M  D  M  M  L  F  L  L  V  L  I  N  F  L  E  V  Q  A  H  L  E  F  L  *  *  T  K  H  S  I  D  *  G  L  H  L  H  L  L  V  E  V  V  L  L  I  L  L  T  R  T  M  K  R :   T  H  F  M  W  R  I  L  K  K  G  K  T  L  V  H  R  Q  S  F  R  K  *  E  Q  H  L  H  F  G  *  K  S  S  *  V  I  K  *  L  K  E  W  N  T  L   </first_frame>
            <second_frame>  *  G  C  R  D  W  I  G  R  K  R  A  S  R  Y  G  S  I  E  G  S  A  *  V  V  *  V  Y  E  *  T  I  V  G  F  V  L  S  L  *  *  C  Y  W  D  L  F  *  Y  K  S  H  R  S  F  T  S  *  K  W  S  F  C  L  L  *  F  R  S  K  :  W  S  I  C  E  N  R  D  E  I  R  R  D  R  W  I  *  C  C  F  Y  *  S  S  *  I  S  W  R  S  R  H  T  W  N  S  C  N  E  Q  S  T  L  S  I  E  D  F  T  S  I  Y  L  W  R  W  Y  C  *  F  C  *  P  V  Q  *  K   : G  H  T  L  C  G  E  Y  *  R  K  G  R  R  W  Y  T  A  N  H  S  E  S  E  N  S  T  C  I  L  G  E  R  V  H  K  S  *  S  N  *  K  N  G  T  H  L  </second_frame>
            <third_frame>   E  V  V  E  I  G  L  D  E  N  G  L  V  D  M  E  A  L  R  D  Q  L  E  L  Y  K  S  T  N  R  P  L  L  G  S  F  S  A  C  S  N  V  T  G  T  Y  S  D  T  R  A  I  A  R  L  L  H  K  N  G  A  F  A  C  F  D  F  A  A  S :   G  P  Y  A  K  I  E  M  R  S  G  E  I  D  G  Y  D  A  V  F  I  S  P  H  K  F  L  G  G  P  G  T  P  G  I  L  V  M  N  K  A  L  Y  R  L  R  T  S  P  P  S  T  C  G  G  G  T  V  D  F  V  N  P  Y  N  E  K  :  D  T  L  Y  V  E  N  I  E  E  R  E  D  A  G  T  P  P  I  I  Q  K  V  R  T  A  L  A  F  W  V  K  E  F  I  S  H  K  V  I  E  R  M  E  H  T  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76951" stop="76743"/>
                    <exon start="76658" stop="76457"/>
                    <exon start="76369" stop="76229"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVVEIGLDENGLVDMEALRDQLELYKSTNRPLLGSFSACSNVTGTYSDTRAIARLLHKNGAFACFDFAASGPYAKIEMRSGEIDGYDAVFISPHKFLGGPGTPGILVMNKALYRLRTSPPSTCGGGTVDFVNPYNEKDTLYVENIEEREDAGTPPIIQKVRTALAFWVKEFISHKVIERMEHTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="77676" PGL_stop="77171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77676" e_stop="77348"/>
            <exon e_start="77253" e_stop="77171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.988" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="77676" e_stop="77348" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.988">
            <gDNA_intron_boundary i_start="77347" i_stop="77254" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77253" e_stop="77171" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77676" stop="77348"/>
              <exon start="77253" stop="77171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATTTGAACAACCAATGTTTAGAGAACACCACAACACTAAGAAATATAACCATAGTAGTTCTATTAGTAGTACTGTTTCCTCTGTTGCTTCACATGAAGATTTGAGAAGTAGAATTGAATCATTTCATGTTAGGGAAAAAGCTATTTCCAAAACTGAATCTGCTGAAAAAAAACTTTCATGGTTACGTTCACAGATTATTGGTGAAAATGTCGATTTCGATTCGCCTTTTGGGAAACGTAGGCTTACTTATGCTGATCATACTGCCTCTGGAAGATCACTTCAATATATCGAAAATTATATCATCAATAACGTCCTTCCTTTCTATG : GTAATAGTCATACTAGTGACAGTCATGTGGGATATCAAACGACGAAAATAGTGCATGAAGCAGCAGCTTATGTGAAGAAATGC</gDNA_template>
            <first_frame> G  I  *  T  T  N  V  *  R  T  P  Q  H  *  E  I  *  P  *  *  F  Y  *  *  Y  C  F  L  C  C  F  T  *  R  F  E  K  *  N  *  I  I  S  C  *  G  K  S  Y  F  Q  N  *  I  C  *  K  K  T  F  M  V  T  F  T  D  Y  W  *  K  C  R  F  R  F  A  F  W  E  T  *  A  Y  L  C  *  S  Y  C  L  W  K  I  T  S  I  Y  R  K  L  Y  H  Q  *  R  P  S  F  L  W :   *  *  S  Y  *  *  Q  S  C  G  I  S  N  D  E  N  S  A  *  S  S  S  L  C  E  E  M  </first_frame>
            <second_frame>  E  F  E  Q  P  M  F  R  E  H  H  N  T  K  K  Y  N  H  S  S  S  I  S  S  T  V  S  S  V  A  S  H  E  D  L  R  S  R  I  E  S  F  H  V  R  E  K  A  I  S  K  T  E  S  A  E  K  K  L  S  W  L  R  S  Q  I  I  G  E  N  V  D  F  D  S  P  F  G  K  R  R  L  T  Y  A  D  H  T  A  S  G  R  S  L  Q  Y  I  E  N  Y  I  I  N  N  V  L  P  F  Y   : G  N  S  H  T  S  D  S  H  V  G  Y  Q  T  T  K  I  V  H  E  A  A  A  Y  V  K  K  C </second_frame>
            <third_frame>   N  L  N  N  Q  C  L  E  N  T  T  T  L  R  N  I  T  I  V  V  L  L  V  V  L  F  P  L  L  L  H  M  K  I  *  E  V  E  L  N  H  F  M  L  G  K  K  L  F  P  K  L  N  L  L  K  K  N  F  H  G  Y  V  H  R  L  L  V  K  M  S  I  S  I  R  L  L  G  N  V  G  L  L  M  L  I  I  L  P  L  E  D  H  F  N  I  S  K  I  I  S  S  I  T  S  F  L  S  M  :  V  I  V  I  L  V  T  V  M  W  D  I  K  R  R  K  *  C  M  K  Q  Q  L  M  *  R  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77675" stop="77348"/>
                    <exon start="77253" stop="77171"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFEQPMFREHHNTKKYNHSSSISSTVSSVASHEDLRSRIESFHVREKAISKTESAEKKLSWLRSQIIGENVDFDSPFGKRRLTYADHTASGRSLQYIENYIINNVLPFYGNSHTSDSHVGYQTTKIVHEAAAYVKKC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="92643" PGL_stop="92258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92643" e_stop="92258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="92643" e_stop="92258" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92643" stop="92258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTGCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGCCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTACGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</gDNA_template>
            <first_frame> R  K  W  R  L  V  D  D  F  F  F  I  I  L  L  S  H  F  T  V  G  A  T  V  I  C  S  Q  I  M  G  E  V  F  S  A  L  W  V  A  M  G  R  Q  F  L  V  E  R  R  V  S  A  Q  Q  H  S  S  L  D  I  Y  L  R  L  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  Y  G  F  H  L  N  L  L  L  S  L  Y  L  *  R  Q  I  F  I  Q  G  C  D  R  S  F  V  D  R  R  G  R  V  Y  F  E  S  F  L  L  N  P  L  N   </first_frame>
            <second_frame>  E  N  G  G  L  *  T  I  S  S  S  S  S  C  S  V  T  S  R  S  G  P  L  L  S  A  P  R  S  W  A  R  Y  F  P  P  F  G  S  L  W  V  A  N  S  S  S  S  A  A  F  L  P  N  N  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  L  F  L  R  L  T  V  S  I  S  T  S  F  F  L  F  I  C  D  A  R  S  S  S  K  V  V  T  A  A  L  *  I  A  V  V  A  S  T  L  S  P  S  S  L  T  L  *  I  </second_frame>
            <third_frame>   K  M  E  A  C  R  R  F  L  L  H  H  P  A  Q  S  L  H  G  R  G  H  C  Y  L  L  P  D  H  G  R  G  I  F  R  P  L  G  R  Y  G  S  P  I  P  R  R  A  P  R  F  C  P  T  T  Q  Q  S  R  Y  L  S  S  P  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  F  S  L  G  L  R  F  P  S  Q  P  P  S  F  S  L  S  V  T  P  D  L  H  P  R  L  *  P  Q  L  C  R  S  P  W  S  R  L  L  *  V  L  P  P  *  P  S  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92641" stop="92324"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEACRRFLLHHPAQSLHGRGHCYLLPDHGRGIFRPLGRYGSPIPRRAPRFCPTTQQSRYLSSPLSPFLRVSPNEASSTFSLGLRFPSQPPSFSLSVTPDLHPRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92624" stop="92310"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TISSSSSCSVTSRSGPLLSAPRSWARYFPPFGSLWVANSSSSAAFLPNNTAVSISIFASLAFPSCISKRSKFNLFLRLTVSISTSFFLFICDARSSSKVVTAAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92643" stop="92395"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKWRLVDDFFFIILLSHFTVGATVICSQIMGEVFSALWVAMGRQFLVERRVSAQQHSSLDIYLRLSRLSFVYLQTKQVQPFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="93481" PGL_stop="92947"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93481" e_stop="92947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="93481" e_stop="92947" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93481" stop="92947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCTGGTTCTGAGTTGGACCTATGTTTGATGAAGGGAAGTAGACGGGAGGTCTTGCATCAGCAGTATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGCATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAACACACAAGTCATTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAAGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</gDNA_template>
            <first_frame> R  L  V  L  S  W  T  Y  V  *  *  R  E  V  D  G  R  S  C  I  S  S  I  S  T  K  S  R  W  R  R  I  L  S  P  L  H  F  N  F  H  F  S  N  L  L  H  Q  L  H  D  Q  F  V  L  F  H  Y  S  G  L  S  H  H  N  V  S  K  T  P  F  V  I  V  V  S  H  N  C  F  S  F  V  *  I  *  S  R  E  G  I  C  R  T  F  R  S  G  E  V  R  M  I  C  Q  L  Y  *  H  R  S  V  K  G  T  *  D  V  K  T  T  Q  R  Q  I  C  *  C  I  S  R  V  Q  N  A  *  Y  R  T  *  N  R  *  T  H  K  S  F  C  L  R  I  S  *  P  T  N  K  D  G  Y  I  F  *  T  N  K  N  L  F  V  W  R  Y  L  G  K  S  </first_frame>
            <second_frame>  G  W  F  *  V  G  P  M  F  D  E  G  K  *  T  G  G  L  A  S  A  V  L  V  P  N  P  G  G  G  A  S  C  L  R  C  I  S  T  F  I  S  A  I  C  C  I  S  C  M  I  N  S  F  C  S  T  T  V  G  *  A  T  T  T  S  V  R  R  P  S  S  L  L  S  P  I  T  V  F  P  L  S  E  F  D  R  G  K  E  S  V  G  P  F  D  L  V  K  *  G  *  S  A  S  F  I  D  T  D  Q  *  K  V  P  E  M  *  K  Q  L  K  G  K  F  V  S  A  Y  P  E  Y  K  M  H  N  I  A  H  K  T  D  K  H  T  S  H  F  V  *  G  Y  L  N  P  R  I  R  T  D  I  Y  F  E  Q  T  R  I  C  L  F  G  A  I  L  G  N  L </second_frame>
            <third_frame>   A  G  S  E  L  D  L  C  L  M  K  G  S  R  R  E  V  L  H  Q  Q  Y  *  Y  Q  I  Q  V  E  A  H  P  V  S  V  A  F  Q  L  S  F  Q  Q  S  V  A  S  A  A  *  S  I  R  S  V  P  L  Q  W  A  E  P  P  Q  R  Q  *  D  A  L  R  H  C  C  L  P  *  L  F  F  L  C  L  N  L  I  E  G  R  N  L  *  D  L  S  I  W  *  S  K  D  D  L  P  A  L  L  T  Q  I  S  K  R  Y  L  R  C  K  N  N  S  K  A  N  L  L  V  H  I  Q  S  T  K  C  I  I  S  H  I  K  Q  I  N  T  Q  V  I  L  F  E  D  I  L  T  H  E  *  G  R  I  Y  I  L  N  K  Q  E  F  V  C  L  A  L  S  W  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93448" stop="93230"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVDGRSCISSISTKSRWRRILSPLHFNFHFSNLLHQLHDQFVLFHYSGLSHHNVSKTPFVIVVSHNCFSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="99573" PGL_stop="100367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99573" e_stop="100367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="99573" e_stop="100367" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99573" stop="100313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99632" stop="100367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAATGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCTCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACTG</gDNA_template>
            <first_frame> R  F  D  K  G  A  T  S  R  T  Q  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  T  G  R  F  Q  W  T  Q  I  Y  F  G  C  H  R  L  F  H  Q  M  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  L  C  P  Q  Q  F  D  L  P  I  W  S  S  R  I  H  H  H  *  *  W  C  K  S  Q  Q  S  S  D  E  R  D  M  *  T  I  *  D  Y  P  P  K  V  N  C  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  E  D  S  E  E  N  D  *  Q  A  A  G  L  A  *  N  V  A  I  C  S  T  G  L  S  N  D  G  Q  N  I  N  W  G  Y  S  I  L  A  S  I  R  N  R  S  S  R  T  C  R  S  R  D  T  V  T  E  D  H  P  R  S  R  A  K  *  C  *  V  G  *  Q  T  D  *  S  T  S  L  D  *  *  K  E  D  G  C  C  L  S  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  *  A  Y  F  S  S  S  R  R  V  Q  R  K  V  R  T  K  L </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  A  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  R  S  T  A  Y  L  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  R  I  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  Q  D  E  Y  K  G  K  F  A  P  N   </second_frame>
            <third_frame>   I  *  *  G  C  H  L  T  N  S  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  V  L  *  N  R  P  L  P  M  D  T  D  L  F  W  L  P  S  I  I  S  P  N  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  T  L  S  A  T  I  *  S  A  D  L  E  F  Q  N  P  S  S  L  I  M  V  Q  I  S  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  S  T  E  G  Q  L  L  I  S  L  K  *  T  E  L  *  R  P  P  T  R  T  S  R  R  F  *  G  K  *  L  T  S  S  G  V  G  M  K  C  C  H  M  L  Y  W  V  I  E  R  R  S  E  H  Q  L  G  L  L  H  T  C  *  Y  T  E  Q  K  Q  S  Y  L  S  K  S  R  Y  R  H  *  G  S  S  K  K  P  S  *  V  M  L  S  G  L  A  N  G  L  I  N  *  P  *  L  M  K  R  G  W  L  L  F  V  M  A  S  C  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  L  S  V  F  F  L  I  K  T  S  T  K  E  S  S  H  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99574" stop="100365"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIGPIEPAASNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESIITDNGANLNSHLMKEICEQFKIIHRRSTAYLPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYRTTVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKRIDQLALIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHQDEYKGKFAPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="125895" PGL_stop="121369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125895" e_stop="125620"/>
            <exon e_start="125191" e_stop="125113"/>
            <exon e_start="124712" e_stop="124645"/>
            <exon e_start="122070" e_stop="121982"/>
            <exon e_start="121502" e_stop="121369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.839" e_score="0.996"/>
          <exon-intron don_prob="0.988" acc_prob="0.471" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="1.000" e_score="0.985"/>
          <exon-intron don_prob="0.992" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="125895" e_stop="125620" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.839">
            <gDNA_intron_boundary i_start="125619" i_stop="125192" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125191" e_stop="125113" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.471">
            <gDNA_intron_boundary i_start="125112" i_stop="124713" i_length="400"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="124712" e_stop="124645" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="1.000">
            <gDNA_intron_boundary i_start="124644" i_stop="122071" i_length="2574"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122070" e_stop="121982" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.648">
            <gDNA_intron_boundary i_start="121981" i_stop="121503" i_length="479"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="121502" e_stop="121369" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125895" stop="125620"/>
              <exon start="125191" stop="125113"/>
              <exon start="124712" stop="124645"/>
              <exon start="122070" stop="121982"/>
              <exon start="121502" stop="121369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330462" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCGACTCTCTGAACTCTGAAGCATCGAAAATTGTGTAATTTTGTAGCCATTGATGAGTCGAGGAGTGTGAAATTTTGTATAAGAAATGGGGAACAGAGGCCATACTCAGTACAGAACGACAAGGAGGACATCCAATTTCTCAATTACTCTCTACATTTTCCTCTTTTTTGTTTTGTCAATGTTCGTATTCTTTTATTACACTAAGGATATCGTAGAAGATGAACAAAAGCTTGTCTTGGCATCGGAGAAGAAGGAAGAGCCTGAATTCGATGAG : AATGAAGATAATTCTGTTTGGGAAGCTTCAAAGAGCCATGGTTTACATCCATGCATTAAGCCAACTGCAAAATACAAAG : CTGCTCTAGGGTGGAAACGCTACTTGACTGTAAAAAGTAATGGTGGATTAAATCAAATGAGGACGGGT : ATAGCTGACATGGTGGCAGTGGCACATGTGATGAATGCAACTTTGGTAATTCCTCAATTGGACAAGCGTTCATTCTGGCAAGATTCAAG : ATATATTTGATGAGAACCATTTCATCAAAGCATTAAGAGGAGACCTCATGATTATTAAAGAGCTTCCTAAAGAAATAGAATCTTTACCTCGAGCTAGGAAGCACTTCACGTCATGGTCAGGAGTGGGTTACTAT</gDNA_template>
            <first_frame> I  R  L  S  E  L  *  S  I  E  N  C  V  I  L  *  P  L  M  S  R  G  V  *  N  F  V  *  E  M  G  N  R  G  H  T  Q  Y  R  T  T  R  R  T  S  N  F  S  I  T  L  Y  I  F  L  F  F  V  L  S  M  F  V  F  F  Y  Y  T  K  D  I  V  E  D  E  Q  K  L  V  L  A  S  E  K  K  E  E  P  E  F  D  E  :  N  E  D  N  S  V  W  E  A  S  K  S  H  G  L  H  P  C  I  K  P  T  A  K  Y  K   : A  A  L  G  W  K  R  Y  L  T  V  K  S  N  G  G  L  N  Q  M  R  T  G  :  I  A  D  M  V  A  V  A  H  V  M  N  A  T  L  V  I  P  Q  L  D  K  R  S  F  W  Q  D  S  R :   Y  I  *  *  E  P  F  H  Q  S  I  K  R  R  P  H  D  Y  *  R  A  S  *  R  N  R  I  F  T  S  S  *  E  A  L  H  V  M  V  R  S  G  L  L  </first_frame>
            <second_frame>  F  D  S  L  N  S  E  A  S  K  I  V  *  F  C  S  H  *  *  V  E  E  C  E  I  L  Y  K  K  W  G  T  E  A  I  L  S  T  E  R  Q  G  G  H  P  I  S  Q  L  L  S  T  F  S  S  F  L  F  C  Q  C  S  Y  S  F  I  T  L  R  I  S  *  K  M  N  K  S  L  S  W  H  R  R  R  R  K  S  L  N  S  M  R :   M  K  I  I  L  F  G  K  L  Q  R  A  M  V  Y  I  H  A  L  S  Q  L  Q  N  T  K  :  L  L  *  G  G  N  A  T  *  L  *  K  V  M  V  D  *  I  K  *  G  R  V :   *  L  T  W  W  Q  W  H  M  *  *  M  Q  L  W  *  F  L  N  W  T  S  V  H  S  G  K  I  Q   : D  I  F  D  E  N  H  F  I  K  A  L  R  G  D  L  M  I  I  K  E  L  P  K  E  I  E  S  L  P  R  A  R  K  H  F  T  S  W  S  G  V  G  Y  Y </second_frame>
            <third_frame>   S  T  L  *  T  L  K  H  R  K  L  C  N  F  V  A  I  D  E  S  R  S  V  K  F  C  I  R  N  G  E  Q  R  P  Y  S  V  Q  N  D  K  E  D  I  Q  F  L  N  Y  S  L  H  F  P  L  F  C  F  V  N  V  R  I  L  L  L  H  *  G  Y  R  R  R  *  T  K  A  C  L  G  I  G  E  E  G  R  A  *  I  R  *   : E  *  R  *  F  C  L  G  S  F  K  E  P  W  F  T  S  M  H  *  A  N  C  K  I  Q  S :   C  S  R  V  E  T  L  L  D  C  K  K  *  W  W  I  K  S  N  E  D  G   : Y  S  *  H  G  G  S  G  T  C  D  E  C  N  F  G  N  S  S  I  G  Q  A  F  I  L  A  R  F  K  :  I  Y  L  M  R  T  I  S  S  K  H  *  E  E  T  S  *  L  L  K  S  F  L  K  K  *  N  L  Y  L  E  L  G  S  T  S  R  H  G  Q  E  W  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125811" stop="125620"/>
                    <exon start="125191" stop="125113"/>
                    <exon start="124712" stop="124645"/>
                    <exon start="122070" stop="121982"/>
                    <exon start="121502" stop="121493"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMGNRGHTQYRTTRRTSNFSITLYIFLFFVLSMFVFFYYTKDIVEDEQKLVLASEKKEEPEFDENEDNSVWEASKSHGLHPCIKPTAKYKAALGWKRYLTVKSNGGLNQMRTGIADMVAVAHVMNATLVIPQLDKRSFWQDSRYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="132616" PGL_stop="127961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132616" e_stop="132458"/>
            <exon e_start="128400" e_stop="127961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132616" e_stop="132458" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="132457" i_stop="128401" i_length="4057"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="128400" e_stop="127961" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132616" stop="132458"/>
              <exon start="128400" stop="127961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTACTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAG : TATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTCATATGGCCTGGCCTTCGTTTTGTTGGTGATAAGGAACATATGTTTTAAGGGCACATTTACTTCTTACCATTGGCACTAGACCTATGATATCAGTTCTTTCTTTGAAATCTGTGACTCTTACGTGTAATATGAAATTCGCGATGGGAAGCCTGCATCATGATGAAAAGAGCTAGGATTTTGCTAAAT</gDNA_template>
            <first_frame> F  T  P  M  A  S  G  W  G  I  T  G  N  K  G  R  C  Y  D  F  W  M  D  F  S  E  C  M  S  R  C  R  E  P  K  D  C  V  L  L  R  E  D  Y  F  E  C  L  H  H  S  K  E  :  Y  Q  R  R  N  R  I  Y  K  E  E  Q  R  Q  L  R  A  A  S  Q  K  K  K  E  G  V  D  G  G  G  G  G  H  H  *  P  L  L  F  L  I  N  H  G  F  I  N  *  K  T  L  K  *  T  V  C  G  F  E  F  *  N  K  E  F  Y  Q  L  H  L  M  *  V  A  S  L  K  *  L  S  S  V  S  F  S  Y  G  L  A  F  V  L  L  V  I  R  N  I  C  F  K  G  T  F  T  S  Y  H  W  H  *  T  Y  D  I  S  S  F  F  E  I  C  D  S  Y  V  *  Y  E  I  R  D  G  K  P  A  S  *  *  K  E  L  G  F  C  *   </first_frame>
            <second_frame>  L  L  Q  W  R  L  D  G  E  L  Q  G  I  K  D  D  A  M  I  S  G  W  I  S  V  S  V  C  L  D  A  G  S  P  R  T  V  Y  F  L  E  K  T  T  S  S  V  F  I  I  P  K  S :   I  N  V  G  T  E  S  T  K  R  S  S  A  N  *  E  L  L  H  K  R  K  R  K  V  *  M  V  V  V  V  V  I  T  D  L  Y  Y  S  *  S  I  M  V  L  S  T  K  R  H  *  S  K  L  Y  V  V  L  N  F  E  I  K  N  S  I  S  C  I  *  C  E  L  H  H  *  N  D  S  V  Q  F  L  S  H  M  A  W  P  S  F  C  W  *  *  G  T  Y  V  L  R  A  H  L  L  L  T  I  G  T  R  P  M  I  S  V  L  S  L  K  S  V  T  L  T  C  N  M  K  F  A  M  G  S  L  H  H  D  E  K  S  *  D  F  A  K  </second_frame>
            <third_frame>   Y  S  N  G  V  W  M  G  N  Y  R  E  *  R  T  M  L  *  F  L  D  G  F  Q  *  V  Y  V  S  M  Q  G  A  Q  G  L  C  T  S  *  R  R  L  L  R  V  S  S  S  F  Q  R   : V  S  T  *  E  P  N  L  Q  R  G  A  A  P  I  E  S  C  F  T  K  E  K  G  R  C  R  W  W  W  W  W  S  S  L  T  F  I  I  L  D  Q  S  W  F  Y  Q  L  K  D  I  E  V  N  C  M  W  F  *  I  L  K  *  R  I  L  S  V  A  F  D  V  S  C  I  I  E  M  T  Q  F  S  F  F  L  I  W  P  G  L  R  F  V  G  D  K  E  H  M  F  *  G  H  I  Y  F  L  P  L  A  L  D  L  *  Y  Q  F  F  L  *  N  L  *  L  L  R  V  I  *  N  S  R  W  E  A  C  I  M  M  K  R  A  R  I  L  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132616" stop="132458"/>
                    <exon start="128400" stop="128296"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTPMASGWGITGNKGRCYDFWMDFSECMSRCREPKDCVLLREDYFECLHHSKEYQRRNRIYKEEQRQLRAASQKKKEGVDGGGGGHH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132615" stop="132458"/>
                    <exon start="128400" stop="128355"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQWRLDGELQGIKDDAMISGWISVSVCLDAGSPRTVYFLEKTTSSVFIIPKSINVGTESTKRSSAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="138452" PGL_stop="137269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138452" e_stop="137269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="138452" e_stop="137269" e_length="1184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138452" stop="137269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAACGAAGCCAAAGCTTGCAGTATAAGATTGAAATTTGGGAATTGTGAATTTGGATAAACCCTAGATTGGAATCGATAGATTCTCTATCCATTTACGTAAAATTCAAGCTCAATTTCTACAGTAACGCCCAAATTCACTGCATTTTCTCTCTCATCCCCTATAAACTCGATGCAATTTCGCAGGTTCTACACCTCTCTAGCGAATTCTAACCGCAACCCATTTCTCCTATATCGAAATCTCACAAACCCTTTTGCTGTTTTCGACCCTAACCCACAGTTTCTCTCTACACAAAGAATCTTGAAAAACTGGGTTCAAAGGCCAATTCGTGTGTCGAAACGTTTTGTCTCATCATTTCCTGCTATGGCAGAAGGAAGAAGACCCACTCATGTGCCTATACCACCCCCAGAAACTGCTGATAAGGCGGAATTGTATCGAGCACTTGAGGCTGCGGTGGGGTCGCAGTTTAGTTCAGAGCCATTGGCACCGGAGCCTCATCCTTTGATTATTGTGGTTAGTGGTCCAAGTGGGGTTGGTAAAGATGCTGTGATTAAAAGGCTTAGAGAAGTTAGGGAGAATATTCATTTTGTTGTTACTGCAACGACAAGGGGGAAAAGGCCGGGTGAGGTTGATGGAAAAGATTACTTTTTTACGAGTAAAGAAGAGTTTTTGTCAATGATTGAGAGACATGAGTTGTTGGAGTATGCATTGGTGTATGGGGATTATAAGGGTATACCAAAGCAACAAATTAGGGATCATATGGCTAAAGGATTGGATATTGTGTTGAGAGTTGATATACAAGGTGCAGCAACACTGAGGAGGATTTTGAGAAATTCTGCAGTGTTTGTGTTCTTGGTGGCGGAGAGTGAAGATGCATTGGTTAAGAGGTTGATTGATAGGAAGACTGAGACTAAAGAGACTTTGCTAGTGAGAATTGCAACGTCTCGAGAGGAAGTGAGGCATATGGGGGAGTTTGATTATGTGGTAGTGAATAGAGAAGGAGAGTTGGAGAATTCTGTTAAGTTAATGGAGTCTATTATTGATGCTGAGAAAGCTAAAGTGAGGCAAAGAACAGTGACAATTTAGAGAGTCTGTTTTTCAGTTTTTTGATCTGTTTTTGATTAAGTTGAGCTGATACTCTTAATGTTGTCTTGTATTCAATTTATGCAACATTGTTTTTCCTA</gDNA_template>
            <first_frame> R  N  E  A  K  A  C  S  I  R  L  K  F  G  N  C  E  F  G  *  T  L  D  W  N  R  *  I  L  Y  P  F  T  *  N  S  S  S  I  S  T  V  T  P  K  F  T  A  F  S  L  S  S  P  I  N  S  M  Q  F  R  R  F  Y  T  S  L  A  N  S  N  R  N  P  F  L  L  Y  R  N  L  T  N  P  F  A  V  F  D  P  N  P  Q  F  L  S  T  Q  R  I  L  K  N  W  V  Q  R  P  I  R  V  S  K  R  F  V  S  S  F  P  A  M  A  E  G  R  R  P  T  H  V  P  I  P  P  P  E  T  A  D  K  A  E  L  Y  R  A  L  E  A  A  V  G  S  Q  F  S  S  E  P  L  A  P  E  P  H  P  L  I  I  V  V  S  G  P  S  G  V  G  K  D  A  V  I  K  R  L  R  E  V  R  E  N  I  H  F  V  V  T  A  T  T  R  G  K  R  P  G  E  V  D  G  K  D  Y  F  F  T  S  K  E  E  F  L  S  M  I  E  R  H  E  L  L  E  Y  A  L  V  Y  G  D  Y  K  G  I  P  K  Q  Q  I  R  D  H  M  A  K  G  L  D  I  V  L  R  V  D  I  Q  G  A  A  T  L  R  R  I  L  R  N  S  A  V  F  V  F  L  V  A  E  S  E  D  A  L  V  K  R  L  I  D  R  K  T  E  T  K  E  T  L  L  V  R  I  A  T  S  R  E  E  V  R  H  M  G  E  F  D  Y  V  V  V  N  R  E  G  E  L  E  N  S  V  K  L  M  E  S  I  I  D  A  E  K  A  K  V  R  Q  R  T  V  T  I  *  R  V  C  F  S  V  F  *  S  V  F  D  *  V  E  L  I  L  L  M  L  S  C  I  Q  F  M  Q  H  C  F  S   </first_frame>
            <second_frame>  E  T  K  P  K  L  A  V  *  D  *  N  L  G  I  V  N  L  D  K  P  *  I  G  I  D  R  F  S  I  H  L  R  K  I  Q  A  Q  F  L  Q  *  R  P  N  S  L  H  F  L  S  H  P  L  *  T  R  C  N  F  A  G  S  T  P  L  *  R  I  L  T  A  T  H  F  S  Y  I  E  I  S  Q  T  L  L  L  F  S  T  L  T  H  S  F  S  L  H  K  E  S  *  K  T  G  F  K  G  Q  F  V  C  R  N  V  L  S  H  H  F  L  L  W  Q  K  E  E  D  P  L  M  C  L  Y  H  P  Q  K  L  L  I  R  R  N  C  I  E  H  L  R  L  R  W  G  R  S  L  V  Q  S  H  W  H  R  S  L  I  L  *  L  L  W  L  V  V  Q  V  G  L  V  K  M  L  *  L  K  G  L  E  K  L  G  R  I  F  I  L  L  L  L  Q  R  Q  G  G  K  G  R  V  R  L  M  E  K  I  T  F  L  R  V  K  K  S  F  C  Q  *  L  R  D  M  S  C  W  S  M  H  W  C  M  G  I  I  R  V  Y  Q  S  N  K  L  G  I  I  W  L  K  D  W  I  L  C  *  E  L  I  Y  K  V  Q  Q  H  *  G  G  F  *  E  I  L  Q  C  L  C  S  W  W  R  R  V  K  M  H  W  L  R  G  *  L  I  G  R  L  R  L  K  R  L  C  *  *  E  L  Q  R  L  E  R  K  *  G  I  W  G  S  L  I  M  W  *  *  I  E  K  E  S  W  R  I  L  L  S  *  W  S  L  L  L  M  L  R  K  L  K  *  G  K  E  Q  *  Q  F  R  E  S  V  F  Q  F  F  D  L  F  L  I  K  L  S  *  Y  S  *  C  C  L  V  F  N  L  C  N  I  V  F  P  </second_frame>
            <third_frame>   K  R  S  Q  S  L  Q  Y  K  I  E  I  W  E  L  *  I  W  I  N  P  R  L  E  S  I  D  S  L  S  I  Y  V  K  F  K  L  N  F  Y  S  N  A  Q  I  H  C  I  F  S  L  I  P  Y  K  L  D  A  I  S  Q  V  L  H  L  S  S  E  F  *  P  Q  P  I  S  P  I  S  K  S  H  K  P  F  C  C  F  R  P  *  P  T  V  S  L  Y  T  K  N  L  E  K  L  G  S  K  A  N  S  C  V  E  T  F  C  L  I  I  S  C  Y  G  R  R  K  K  T  H  S  C  A  Y  T  T  P  R  N  C  *  *  G  G  I  V  S  S  T  *  G  C  G  G  V  A  V  *  F  R  A  I  G  T  G  A  S  S  F  D  Y  C  G  *  W  S  K  W  G  W  *  R  C  C  D  *  K  A  *  R  S  *  G  E  Y  S  F  C  C  Y  C  N  D  K  G  E  K  A  G  *  G  *  W  K  R  L  L  F  Y  E  *  R  R  V  F  V  N  D  *  E  T  *  V  V  G  V  C  I  G  V  W  G  L  *  G  Y  T  K  A  T  N  *  G  S  Y  G  *  R  I  G  Y  C  V  E  S  *  Y  T  R  C  S  N  T  E  E  D  F  E  K  F  C  S  V  C  V  L  G  G  G  E  *  R  C  I  G  *  E  V  D  *  *  E  D  *  D  *  R  D  F  A  S  E  N  C  N  V  S  R  G  S  E  A  Y  G  G  V  *  L  C  G  S  E  *  R  R  R  V  G  E  F  C  *  V  N  G  V  Y  Y  *  C  *  E  S  *  S  E  A  K  N  S  D  N  L  E  S  L  F  F  S  F  L  I  C  F  *  L  S  *  A  D  T  L  N  V  V  L  Y  S  I  Y  A  T  L  F  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138350" stop="137367"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSSISTVTPKFTAFSLSSPINSMQFRRFYTSLANSNRNPFLLYRNLTNPFAVFDPNPQFLSTQRILKNWVQRPIRVSKRFVSSFPAMAEGRRPTHVPIPPPETADKAELYRALEAAVGSQFSSEPLAPEPHPLIIVVSGPSGVGKDAVIKRLREVRENIHFVVTATTRGKRPGEVDGKDYFFTSKEEFLSMIERHELLEYALVYGDYKGIPKQQIRDHMAKGLDIVLRVDIQGAATLRRILRNSAVFVFLVAESEDALVKRLIDRKTETKETLLVRIATSREEVRHMGEFDYVVVNREGELENSVKLMESIIDAEKAKVRQRTVTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="159307" PGL_stop="163565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="159307" e_stop="159334"/>
            <exon e_start="159416" e_stop="159490"/>
            <exon e_start="162644" e_stop="162727"/>
            <exon e_start="162808" e_stop="163565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.719" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="159307" e_stop="159334" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="159335" i_stop="159415" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="159416" e_stop="159490" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.958">
            <gDNA_intron_boundary i_start="159491" i_stop="162643" i_length="3153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="162644" e_stop="162727" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.719">
            <gDNA_intron_boundary i_start="162728" i_stop="162807" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="162808" e_stop="163565" e_length="758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159307" stop="159334"/>
              <exon start="159416" stop="159490"/>
              <exon start="162644" stop="162727"/>
              <exon start="162808" stop="163565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAAGCGAGTTCTTTGATTATTTCAAA : GTTCTATGCATCCAAGGGTTTCTCACATGTCGGAAGCACGCAGAGCGTATAATTCTTCTTGTCGAGATGCTTCAG : GATTCTGGTTACCCTTGTTTCAAGGGTGGTCCCCGAACAATTCAGAACCTAAGAAAGAGATTTCATCTTAGTTTAACAGAAGAG : CAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTTGCAGTTTGCTTCTCTTTCTGAGGAATTTGTAGTTGTACCTGCGAATGTTGTATTGAAATATACCAGGTGCAAGCTCTCTTCAAGAAGAGCTTTAATTTCTAGTTTCACTCAATTTTCAAGATTATTGGACAAAGGCATGGGTTGTCTTCAGTGAAGAGATTTGTCGAGTACACCCACCCACCCCGTGGGTACATACTGTACAGAGCTGTGTAAGAGATTGCAACAGTGGTGGCTTGCTGCCAGAACGCGAGAGACAGACAGACGGCTGTTGGTACCGTTTGAATTGAATCATGAGTATGCTGGTGCAACATGATATTTGGTTTGTACAATAGCTTATTTGCTTTGATTTTGTTTTTCATTTTCCCTTTTATTGTGTCAAAGGCATTATTTAGATTAGCAGTAGGAAAATTGCAGCCTGCTCTTAATTTTCAAGTCTTTGATTCTTTGTGTTCACCAGGAGATTCTGAAACAGCAGAGTTGTAATGTATAATATTTTTT</gDNA_template>
            <first_frame> S  K  R  V  L  *  L  F  Q   : S  S  M  H  P  R  V  S  H  M  S  E  A  R  R  A  Y  N  S  S  C  R  D  A  S   : G  F  W  L  P  L  F  Q  G  W  S  P  N  N  S  E  P  K  K  E  I  S  S  *  F  N  R  R   : A  M  C  F  L  G  T  F  F  D  *  Q  *  L  G  C  V  A  Y  S  S  I  *  L  L  S  E  G  L  K  W  D  I  M  R  S  K  *  V  Y  P  H  R  N  V  I  I  H  V  K  R  N  R  S  L  T  C  L  L  R  G  A  W  L  G  K  S  N  S  L  Y  E  R  V  L  L  I  L  S  R  L  K  D  C  L  S  F  A  V  C  F  S  F  *  G  I  C  S  C  T  C  E  C  C  I  E  I  Y  Q  V  Q  A  L  F  K  K  S  F  N  F  *  F  H  S  I  F  K  I  I  G  Q  R  H  G  L  S  S  V  K  R  F  V  E  Y  T  H  P  P  R  G  Y  I  L  Y  R  A  V  *  E  I  A  T  V  V  A  C  C  Q  N  A  R  D  R  Q  T  A  V  G  T  V  *  I  E  S  *  V  C  W  C  N  M  I  F  G  L  Y  N  S  L  F  A  L  I  L  F  F  I  F  P  F  I  V  S  K  A  L  F  R  L  A  V  G  K  L  Q  P  A  L  N  F  Q  V  F  D  S  L  C  S  P  G  D  S  E  T  A  E  L  *  C  I  I  F  F </first_frame>
            <second_frame>  P  S  E  F  F  D  Y  F  K  :  V  L  C  I  Q  G  F  L  T  C  R  K  H  A  E  R  I  I  L  L  V  E  M  L  Q  :  D  S  G  Y  P  C  F  K  G  G  P  R  T  I  Q  N  L  R  K  R  F  H  L  S  L  T  E  E  :  Q  C  V  S  L  V  L  S  L  I  S  S  S  L  D  A  W  R  T  R  Q  Y  D  Y  Y  Q  R  V  L  N  G  I  L  *  G  Q  S  E  F  I  H  T  E  T  *  L  Y  M  *  R  E  T  D  L  *  L  V  C  *  E  G  L  G  W  E  R  A  I  H  Y  M  N  V  F  F  *  F  C  R  G  *  R  I  A  C  P  L  Q  F  A  S  L  S  E  E  F  V  V  V  P  A  N  V  V  L  K  Y  T  R  C  K  L  S  S  R  R  A  L  I  S  S  F  T  Q  F  S  R  L  L  D  K  G  M  G  C  L  Q  *  R  D  L  S  S  T  P  T  H  P  V  G  T  Y  C  T  E  L  C  K  R  L  Q  Q  W  W  L  A  A  R  T  R  E  T  D  R  R  L  L  V  P  F  E  L  N  H  E  Y  A  G  A  T  *  Y  L  V  C  T  I  A  Y  L  L  *  F  C  F  S  F  S  L  L  L  C  Q  R  H  Y  L  D  *  Q  *  E  N  C  S  L  L  L  I  F  K  S  L  I  L  C  V  H  Q  E  I  L  K  Q  Q  S  C  N  V  *  Y  F   </second_frame>
            <third_frame>   Q  A  S  S  L  I  I  S  K :   F  Y  A  S  K  G  F  S  H  V  G  S  T  Q  S  V  *  F  F  L  S  R  C  F  R :   I  L  V  T  L  V  S  R  V  V  P  E  Q  F  R  T  *  E  R  D  F  I  L  V  *  Q  K  S :   N  V  F  P  W  Y  F  L  *  L  A  V  A  W  M  R  G  V  L  V  N  M  I  I  I  R  G  S  *  M  G  Y  Y  E  V  K  V  S  L  S  T  P  K  R  D  Y  T  C  E  E  K  P  I  F  N  L  F  A  E  R  G  L  V  G  K  E  Q  F  T  I  *  T  C  S  S  D  S  V  E  V  K  G  L  L  V  L  C  S  L  L  L  F  L  R  N  L  *  L  Y  L  R  M  L  Y  *  N  I  P  G  A  S  S  L  Q  E  E  L  *  F  L  V  S  L  N  F  Q  D  Y  W  T  K  A  W  V  V  F  S  E  E  I  C  R  V  H  P  P  T  P  W  V  H  T  V  Q  S  C  V  R  D  C  N  S  G  G  L  L  P  E  R  E  R  Q  T  D  G  C  W  Y  R  L  N  *  I  M  S  M  L  V  Q  H  D  I  W  F  V  Q  *  L  I  C  F  D  F  V  F  H  F  P  F  Y  C  V  K  G  I  I  *  I  S  S  R  K  I  A  A  C  S  *  F  S  S  L  *  F  F  V  F  T  R  R  F  *  N  S  R  V  V  M  Y  N  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159308" stop="159334"/>
                    <exon start="159416" stop="159490"/>
                    <exon start="162644" stop="162727"/>
                    <exon start="162808" stop="162909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGYPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQRVLNGIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 36 chains have been computed
$ 
$ memory statistics:
$ 37832 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 1991 bytes was the average size of a spliced alignment
$ 26288 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1460 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 42 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 06:13:54
-->
