<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:39:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331680" ref_strand="+" ref_description="SGN-U331680        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | plectin-related, contains weak similarity to Swiss-Prot:Q9JI55 plectin 1 (PLTN, PCN, 300-kDa intermediate filament-associated protein, IFAP300)(Cricetulus griseus) | chr2:11411144-11415385 REVERSE | Aliases: None(evalue: 6e-59, score=224) genbank/nr: unknown(evalue: 4e-57, score=224)">
      <seq>atggagaccagacaacatcagtgacgactgctggtcctattgatccggctgcaggcttggggaactatgttgaagctttggtgcgtaggcatgacattgaattcaatgtagttgttgtccagatgaatggaacagatcatacatcagagactatccatgtacttcacatcggaaggatgagaatgaaactatgtaaagggaagaccagcatagcaaaagaatactattccacttcaatgcagttatgtggcgtccgaggtggtggaaatgctgcagctcaggcagcattttggcaagtaaagactggactctcctttgtattggcgtttgaaacggagagagaaagaaatgcagccattatgctggccagaagatttgcttacgactgcaatattatgctatctggaccggatgatagagccactcctggatcttaagaaagctactataataaaaaggtgtaattatactgactctgatgtatctataggtgctttgtagtagtgaatatgcagtagggttgattgttgagtggcattttttcaccaccttcttgtcttctctttatttctatcttgataagcaaaggcattgttttttgtgtccctagctctatttgattgtaatgattctttgctccttgtttctttgttttgtcaagtgattgtaattgagctcaaacatacatttgatttttgaatggcttgtagtgattgacttgtgttcttcaaacaacaatcctttttatgtttggatgaaatgattatataactaaatcatgctgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="1" stop="2878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="35" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="107" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36" i_stop="1310" i_length="1275">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1311" g_stop="1445" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="242" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1729" i_length="284">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1730" g_stop="1879" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="392" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1880" i_stop="2182" i_length="303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2183" g_stop="2578" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="788" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-U331680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="35"/>
          <exon e_start="1311" e_stop="1445"/>
          <exon e_start="1730" e_stop="1879"/>
          <exon e_start="2183" e_stop="2578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTGGTGCGTAGGCATGACATTGAATTCAATGTACGTTCAATTAAAAGTTTGCTCCTTTATTAGGAATTCCTCAATTAAGTTCTCTTTTCGCTAATCTACTACTTCTTCTAAGTCTCTTTTGATTGTTCTATATAGCTGTATTGTCTTTACAAATATGTCTCTGCGTCTAACTCTCAGTTCACCAATTTAAATCATCTTACTGCCTTGTAGTTTGTGTACTCCTCACTGACACATCATGTTATGCATAGGCTTATGTAATTAAAGAAATGAAAGTGTTCATCTTTAATATCTGAAGTTTGCCATTTTGGAAGAGATCAAATAGTAGATGAGGCGGTTACACATTCAAATAAGGTTGTCCACTGGTTGTATAAAGACTCCTGTAGGGGGTTTGTAAAGGGCTTTTCCAGCATTTTCCTTCTCTCATTCTCCTTGTGTTTTGTCCAGTTTAAGTGTGTAATCATCTCATCTAAATGTTTAAGCTATTAGAGAGAGCACACTTTTATTAGTTAATTATTTCTCAACATGCCCCCTCACGTGCGGGCTTGATTCTTTTCATGCGCCAAGCATGGGATTTTTTTTTATTTATTTGGGTGGCGGTGAGATTCGATCCCAAGATCTTTGTCTGCTTTGATACCACGTTGAAATCACTACAATAAAAATAACTTTTAGCGGCATTAAATATTGACATTAATAAAGAGTGCTAAAGTCTAAACCGGCATTAGTTAAGTGTCATTAGAACCAATGTCGTTAAAGGCTTTAGGGACATATACAAAGAATGTCAATTGCCGCTAAAAATACATATCTAGCGGCAATTAATTCATAATTGCCGCTAATGATTATTTTTGTTGTAATGAGCGTGTGACTACTCGTTTGAAAGCGTAAGCTATTAGAGAGAACACACTTTTATTAGTTAATTATATTCTCAACACATCCATTTCAACATTGCTCCAAAGAATTTAAAAATGATGTCAAAGCAGACAAAGGTCCTATGCTCCAACTGGACCCCCACCTGTTTTTAAACGAGTATTAACATGTTTTTACGCAAGGAAAAGAATCAGACTCATACGTGAAGCGGTGTATTTAGACATAATTAAATAAATAGAAGTGTCCATCCTCTAAGAATTTAAATTATTGGATAAGGAACATATTCAGCAAAACTATCCAGTTTCGAGAAGAACATAAAACTGAGAATGTTAATAAGAGTAAGATGGATTCCATCTTGGTATGTTGATGTTGCGTCATAGCTGCATTCGTCTTTCTCCAACTCCTTACTTGTATGTATATGTTTATTGGTGGTATTTGTAGGTAGTTGTTGTCCAGATGAATGGAACAGATCATACATCAGAGACTATCCATGTACTTCACATCGGAAGGATGAGAATGAAACTATGTAAAGGGAAGACCAGCATAGCAAAAGAATACTATTCCACTTCAATGCAGGTATTAATAATGCCTAGTCCCTTGCCATTTCTTTCATTTAGGTGTTGTGAGAATTTATATAGAATAATAGAAAGAGAACAATTACGTTCATGTATATATAACTAGCAAGGGATCGGACCGCCCTGCGTACAAATTTGTAGCACAAATAATAGGCCAAAGGACTACAATTTTTTGTTTTGGTTTTTTTGGCTTATTATGATGTTCAAATGTCTGGACTCGGGGATTTATGCTCTACAATTTGAACAGCTGCCAACACTCTTTCCCTAACTTATCTGTTACCACAGTTATGTGGCGTCCGAGGTGGTGGAAATGCTGCAGCTCAGGCAGCATTTTGGCAAGTAAAGACTGGACTCTCCTTTGTATTGGCGTTTGAAACGGAGAGAGAAAGAAATGCAGCCATTATGCTGGCCAGAAGATTTGCTTACGACTGCAATGTAAGTCTAGACTCGTTTTTTACTTTTGGCATCATTACATATCGTAGAACTTCTTAAAGTAGTTTCTAGTTTGTTAGTCTCCAGTACATCTACTGTAAGTCTAGATTTATCATTAAACAAGTATGTTTAATGATAAGGTCTTCTCGAAAAAGCCTCTACCTCCACGAGCTAGTCGTAAGGTCTGGGCATACTCTACCCTCCCCAAACCCCACATAGTGGGATTTCACTGGATATATTGTTATAAAAATATTGTTCTTGTTATCCAGTATGATCTCAGAAAACTTGTGCAACTTTAATTTGCAGATTATGCTATCTGGACCGGATGATAGAGCCACTCCTGGATCTTAAGAAAGCTACTATAATAAAAAGGTGTAATTATACTGACTCTGATGTATCTATAGGTGCTTTGTAGTAGTGAATATGCAGTAGGGTTGATTGTTGAGTGGCATTTTTTCACCACCTTCTTGTCTTCTCTTTATTTCTATCTTGATAAGCAAAGGCATTGTTTTTTGTGTCCCTAGCTCTATTTGATTGTAATGATTCTTTGCTCCTTGTTTCTTTGTTTTGTCAAGTGATTGTAATTGAGCTCAAACATACATTTGATTTTTGAATGGCTTGTAGTGATTGACTTGTGTTCTTCAAACAACAATCCTTTTTATGTTTGGATGAAATGATTATATAACTAAATCATGCTGAAGT</genome_strand>
        <mrna_strand>AAGCTTTGGTGCGTAGGCATGACATTGAATTCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGTTGTCCAGATGAATGGAACAGATCATACATCAGAGACTATCCATGTACTTCACATCGGAAGGATGAGAATGAAACTATGTAAAGGGAAGACCAGCATAGCAAAAGAATACTATTCCACTTCAATGCAG............................................................................................................................................................................................................................................................................................TTATGTGGCGTCCGAGGTGGTGGAAATGCTGCAGCTCAGGCAGCATTTTGGCAAGTAAAGACTGGACTCTCCTTTGTATTGGCGTTTGAAACGGAGAGAGAAAGAAATGCAGCCATTATGCTGGCCAGAAGATTTGCTTACGACTGCAAT...............................................................................................................................................................................................................................................................................................................ATTATGCTATCTGGACCGGATGATAGAGCCACTCCTGGATCTTAAGAAAGCTACTATAATAAAAAGGTGTAATTATACTGACTCTGATGTATCTATAGGTGCTTTGTAGTAGTGAATATGCAGTAGGGTTGATTGTTGAGTGGCATTTTTTCACCACCTTCTTGTCTTCTCTTTATTTCTATCTTGATAAGCAAAGGCATTGTTTTTTGTGTCCCTAGCTCTATTTGATTGTAATGATTCTTTGCTCCTTGTTTCTTTGTTTTGTCAAGTGATTGTAATTGAGCTCAAACATACATTTGATTTTTGAATGGCTTGTAGTGATTGACTTGTGTTCTTCAAACAACAATCCTTTTTATGTTTGGATGAAATGATTATATAACTAAATCATGCTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331960" ref_strand="+" ref_description="SGN-U331960        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: gi|47824994|gb|AAT38766.1| putative polyprotein [Solanum demissum] (evalue: 5e-40, score=165)">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="39178" stop="40172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39478" g_stop="39872" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-U331960" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39478" e_stop="39872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATTGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAATGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="48062" stop="48998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48362" g_stop="48698" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48362" e_stop="48698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCGACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTATATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339540" ref_strand="+" ref_description="SGN-U339540        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-58, score=228)">
      <seq>agattcgatggagaaagtgaagtctattcaagaaaagcttctagcggcgcaaagtagacaaaaagaatatgcagatcgaaaggttagagacttagagttcatggagggcgaacaagtcttgttgaaagtctcgccaatgaaaggggtgatgcggtttcgtaaaagaggtaagttaagtccaaggtatattggaccatttgaggtactaaagcgagtaggggaggtggcttatgaattagccttacctccagggctgtccggagtacatccggtatttcatgtatccatgttgaaaagataccatggagatggaaactacatcatccgttgggattcagtttcgcttggtgagaattggacttatgaggaggaaccagttgctattttagatagagaggttcgcaagttgaggtcgagagaaattgcatccatcaaagttcaatggaagaatcgaccggttgaagaagctacttgggagaaggaggcagatatgcaagaaaaatacccacatctgtttacagattcaggtactccttttcgccattgtttttcttcatttgatcgttcggggacgaacgatgggtaaattggtatctattgtaacgacctgtttagtcgttttgagcagcagattttaattctggaaaaactggccaagaccacgggcactgcgacggaccgtcacaggcacgacggcccgtcgaaggtgcatcgtttcagcatacttagaatttctgaatttggatatgaaaatcgactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="50564" stop="49309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50265" g_stop="49503" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-U339540" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50265" e_stop="49503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCGATGGAAAAAGTGAGGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAAGGTGAACAAGTCTTGTTGAAAGTTTCACCCATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTGGGGGAGGTGGCTTATGAGTTAGACTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCGGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAGATACCCACATCTGTTTAAAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTATTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTAATGTAACGACCCGTTTAGTCGTTTTGAGCAGCAGACTTTATTTCTGGAAAAACTGGCAGAAGCGACGGACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGG-GTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGATACTAAAAATCGACTCTCT</genome_strand>
        <mrna_strand>AGATTCGATGGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGCGAACAAGTCTTGTTGAAAGTCTCGCCAATGAAAGGGGTGATGCGGTTTCGTAAAAGAGGTAAGTTAAGTCCAAGGTATATTGGACCATTTGAGGTACTAAAGCGAGTAGGGGAGGTGGCTTATGAATTAGCCTTACCTCCAGGGCTGTCCGGAGTACATCCGGTATTTCATGTATCCATGTTGAAAAGATACCATGGAGATGGAAACTACATCATCCGTTGGGATTCAGTTTCGCTTGGTGAGAATTGGACTTATGAGGAGGAACCAGTTGCTATTTTAGATAGAGAGGTTCGCAAGTTGAGGTCGAGAGAAATTGCATCCATCAAAGTTCAATGGAAGAATCGACCGGTTGAAGAAGCTACTTGGGAGAAGGAGGCAGATATGCAAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCATTGTTTTTCTTCATTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTAATTCTGGAAAAACTGGCCAAGACCACGGGCACTGCGACGGACCGTCACAGGCACGACGGCCCGTCGAAGGTGCATCGTTTCAGCATACTTAGAATTTCTGAATTTGGATA-TGAAAATCGACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="50026" stop="50803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50326" g_stop="50502" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50326" e_stop="50502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="51507" stop="52818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51807" g_stop="52519" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51807" e_stop="52519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATATCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCAGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGA</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="54122" stop="52115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53822" g_stop="53650" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53649" i_stop="52906" i_length="744">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.084" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52905" g_stop="52379" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53822" e_stop="53650"/>
          <exon e_start="52905" e_stop="52379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCAACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAAGGTTCGGGAAATTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCTCCTCAGACCGGTCAACACTTCTCCGAGGGGCATATGACCGACTCCAAAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAGAAATTGTCCCAGACCAAGTTACAGACCCCTAATAACTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTTTTCTGGAGGGCGTGGTGGTCGAGGTAATAGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCAGTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGGTATGCCTATCCGTGTCTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGGAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGACGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCTTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCCTTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGACGACACTACCCAAGTGCCTTCGA-TGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCTCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="52096" stop="53452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52396" g_stop="53152" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52396" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTC-ATCGAAGGCACTTGGGTAGTGTCGTCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAAGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTCCAACTACCACAGACTCACCCACCGGAGTAGAGACACGGATAGGCATACCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="52704" stop="53863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53005" g_stop="53563" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53005" e_stop="53563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGGATAGGCATACCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACACTGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGTTATTAGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGGTCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGAGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAATTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="52709" stop="54745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53009" g_stop="54445" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53009" e_stop="54445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATAGGCATACCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACACTGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGTTATTAGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGGTCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGAGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAATTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTTGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAACTCGTGACAGTCAACCAGAAAATCATAGGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTAAAATCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="53784" stop="54817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54084" g_stop="54516" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54084" e_stop="54516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTAAAATCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGTTCGTCCTCTCCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTCACCGTTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="55109" stop="54223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54809" g_stop="54523" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54809" e_stop="54523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGATCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTCTCCTTGAGAGGCTATAAGACTTTAGGAAAAATTTCACTCTTTCATTCTCTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTGGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACGGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGG-AAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339613" ref_strand="+" ref_description="SGN-U339613        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Integrase,(evalue: 1e-44, score=182)">
      <seq>acgaatttgctacttgcatagaaatctccaattgtcagttggattcaagatgagtaatggagatgtatacctttttcatagtgctactacacatacaatattaaaagaaaagaaaagaaatacttttctaatttggttatgaaaatgacatatgtcaacacaatatcaggtagtacaaaattaattgagagctctggaagagcgaccttattacaacctggagagacaatattggacatttgtaatgcattataccgtagtaagtcacaaagaaacttattaagtttcagagtaattcgccaaaatggctatcacgttgagacgactaatgaaggaaaggatgaatgcctttacattactacaattaatgtacagaagaaaattgtgcatgaaaaattacgtgcattttcttctaggttctactatacaagtgtaagtacagttgaatcacatgtcgtagtaaacaaaaggtttactaattttaatgattctattatttggtatgaccggttgggccatcccggatttaatatgatgcacagaatcattgagaattcacgtgggcacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="58128" stop="56979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57824" g_stop="57279" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="572" r_length="551" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-U339613" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57824" e_stop="57279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGACGTATGCCTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAG--AA-ATAT--TTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAAAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAAAAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACTGGTTGGGCCATCTCGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGGCACACCTT</genome_strand>
        <mrna_strand>AAATCTCCAATTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATACCTTTTTCATAGTGCTACTACACATACAATATTAAAAGAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGACATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAGCTCTGGAAGAGCGACCTTATTACAACCTGGAGAGACAATATTGGACATTTGTAATGCATTATACCGTAGTAAGTCACAAAGAAACTTATTAAGTTTCAGAGTAATTCGCCAAAATGGCTATCACGTTGAGACGACTAATGAAGGAAAGGATGAATGCCTTTACATTACTACAATTAATGTACAGAAGAAAATTGTGCATGAAAAATTACGTGCATTTTCTTCTAGGTTCTACTATACAAGTGTAAGTACAGTTGAATCACATGTCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTCTATTATTTGGTATGACCGGTTGGGCCATCCCGGATTTAATATGATGCACAGAATCATTGAGAATTCACGTGGGCACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339612" ref_strand="+" ref_description="SGN-U339612        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Integrase,(evalue: 9e-34, score=146)">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="58027" stop="57046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57714" g_stop="57346" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-U339612" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57714" e_stop="57346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAAAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAAAAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332943" ref_strand="+" ref_description="SGN-U332943        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:12587406-12588456 FORWARD | Aliases: None(evalue: 7e-76, score=280) genbank/nr: gi|15144515|gb|AAK84482.1| unknown [Lycopersicon esculentum](evalue: 5e-123, score=443)">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="59430" stop="58058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59122" g_stop="58359" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-U332943" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59122" e_stop="58359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGTTATCAGCACGAGATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTACTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTAAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCCGACGGTGAAAGATCCACTTGAATTGTGGACTGATTTAAACGGGAGATATGACCACCTAAAGGCAACAATGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACACGTTGGAAAAGACACTTACTACTTTTCATGCCTTGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTCAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATATGGTGGAATCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGATATAATAATGCACGGGGACGTGGAAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313031" ref_strand="+" ref_description="SGN-U313031        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: AT2G26980.4 | Symbol: None | similar to protein kinase family protein / NAF domain-containing protein [Arabidopsis thaliana] (TAIR:At5g21326.1); similar to serine/threonine kinase [Sorghum bicolor] (GB:CAA73067.1); similar to CIPK-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAP82174.1); similar to serine/threonine kinase [Sorghum bicolor] (GB:CAA73068.1); contains InterPro domain Serine/threonine protein kinase, active site (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase (InterPro:IPR001245); contains InterPro domain NAF domain (InterPro:IPR004041); contains InterPro domain Serine/threonine protein kinase (InterPro:IPR002290); contains InterPro domain Protein kinase (InterPro:IPR000719) | chr2:11521781-11525583 REVERSE | Aliases: None (evalue: 0, score=738) genbank/nr: gi|62857008|dbj|BAD95889.1| Ser/Thr protein kinase [Lotus corniculatus var. japonicus] (evalue: 0, score=789)">
      <seq>acaattattacagcaacattagaatttcaagatttggatgttgccttcttttcaacttaccatatatttgtccaaatttttgaggatttctaagctgctgtaatcaatcttttttgacccccaaacaacaaaggctgcaactttcatacttcatctttatctttatcttggccaacaccccatttcaaaatttcagctcaaataaaaggttctttaagaaggattacgcctgcattctttaaaggactgtgcaagtatctcagttatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaagtttgcgaggaattcggagacaggagaagctgtagcgatcaagattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaattagacatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggcggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatactttcagcagcttattaatgctgttgattattgtcatagcaggggagtctaccatagagatttaaagcctgagaatttactcttggatgtcaatggaaacctcaaggtttctgattttggattgagtgctctgtcccagcaagtcagggatgatggcttactccacaccacatgtggaactcccaactatgttgctcctgaggtactcaacgatcatggatatgatggtacaaccgcggatctgtggtcgtgcggagtcatactctttgtattgcttgcaggttacttgccttttgatgactccaatcttattaacctgtataaaaaaatctctgctgctgaatttacatgtcctccttggatgtcttttggtgctatgaagttaattactcgcatcttggatccgaaccctatgacacgtatcaccatctcagaaattctggaggatgagtggttcaagaaagattataaatctcccatttttaatgagaaaggagatgccaacctggatgatgttgaagctgtcttcaaggattctgaagaacatcatgtaacagagaaaaaggaagagcagccaactcccatgaatgcattcgagttgatttcaatgtcaaaaggactcaaccttgggaatctcttcgatgaacaggaatttaagagagaaacaaggttcacatctaaatgctcggccaatgaaattatcagtaagattgaagaagctgcaaagcccctcggttttgatgttcacaaaaagaactacaagatgagacttgaaaatgtcaaagctggaagaaaagggaaccttaatgttgccactgaggtatttcaagttgccccttctcttcatatggttgaagtccgaaaggcaaaaggagatactttggaattccacaagttctacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagctaggtagtattactaccatgaactgcaattgcataagcttttgctggtcccacaatctgtgtaaaaaactttgcaacttgtttctttctttcccttttttttgtcatttggtctgttctttgtagtgggacttttttctcccatgagctaatggccaactgttctatttcatcatggagtaggacttttgttcctatttgatttgatttgcagtttgtataacaaatatacacttttgagaaatgtatacaactcttcagccccctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttggggggggggggggcccccccccccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73860" stop="65228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73560" g_stop="73359" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="436" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="499" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="571" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="679" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69804" g_stop="69724" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="760" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69014" g_stop="68961" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="814" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68825" g_stop="68700" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="940" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68615" g_stop="68526" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="941" r_stop="1030" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="68525" i_stop="68426" i_length="100">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="68425" g_stop="68303" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1031" r_stop="1153" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="68302" i_stop="68196" i_length="107">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="68195" g_stop="68088" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1154" r_stop="1261" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="68087" i_stop="67273" i_length="815">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="67272" g_stop="67159" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1262" r_stop="1375" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="67070" g_stop="67014" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1376" r_stop="1432" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1433" r_stop="1507" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="66095" g_stop="65742" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1508" r_stop="1861" r_length="354" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1883" polyA_stop="1901"/>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-U313031" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1861</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73560" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69724"/>
          <exon e_start="69014" e_stop="68961"/>
          <exon e_start="68825" e_stop="68700"/>
          <exon e_start="68615" e_stop="68526"/>
          <exon e_start="68425" e_stop="68303"/>
          <exon e_start="68195" e_stop="68088"/>
          <exon e_start="67272" e_stop="67159"/>
          <exon e_start="67070" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
          <exon e_start="66095" e_stop="65742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGGGTAACTGTCGATTATCCATTCTCAAACTCTTAATATATGTCTCCAATCTTTGATATGACTTTTGCTTTGTGGCTGTCAAAATTAATGCAGTGAATCTTCCATTGTGTAACCTACTAGTAGATTGTGCATCAATATCTTAAGTCTTAACATCTTTATGATTGCCTTGAGTACATTTTCTTGTTTGAGAAATGCGGTACATAACTCCGCCCCCTCCCCCTAGCTGAAGCCACAGATCTCCATGGAAAGCGCCATATCAGAGACAAACTACTGAGAGGAGTTTCTAAAAACGCAAATCGAGTAATTGTCACTAGAGAAAGAAGCCAGCATAATTTTTACTGAAATCCGTTTGTGCTTATTCCTTCTGTTAACTAGTTTAAACATCATTTGGAATTGATTCAATCTTATTATTAGAATATTCAGATTCAACTGAATATATTGTTTTCGAGTTTGGTTAACTTTGTGAAGCAACTGTGCGTGGAGCTTGGGACAATGTCATTAAATTTGTGATCGACTGCTGACTAGTTATTTGCTTTGAACTGATCCGAAAATTATTGGACAATGACTTCCTTTTTCCGTTTTAGCTAGAGAACTCATGCTAGTTTCAAACAGCAGTAGTCCTGCAAGATATTTCTCTCACTTAGGTTATAGACTTATAGTTGACATTCTTTTCGGAATCAGATATATTTCTTACTCTAGTGAAATTTTCCAGGATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAGGTATGATGAATTTCGTTTCAACAACTTGTTCTTTTTGTTCATTTCTCACAAAGAAAAAATAAGGTCTCCCTGTCATGTGCACTCTTCTTATCTTATTTTTCTCTTGGTTTAACAAATGAGATTCATTTCTTTTAGGTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAAGTGAGCATTCTTCCAAATTCATTATGGAATCAATCTGCTTTTGTTTTCCCTATTATTTTCACGATGTCATCACGGTCTTTGTAGATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACAGTAAGCATACTGGATTTCTGAATACAATTGCGGGATTTTAGCTTGCAACTAAATCAACATCTTTTCTCTTATTTTATTATTGCACGTGTCTCCTATGCAGCGTATCACCATCTCAGAAATTCTGGAGGATGAGTGGTTCAAGAAAGATTATAAATCTCCCATTTTTAATGAGAAAGGAGATGCCAACCTGGATGATGTTGAAGCTGTCTTCAAGGATTCTGAAGTGAGCACACTGAAATGTTGAACAAGTTTTTCATTGAATTCAGAGGAAAGAATTGATTGTTGTATAGTCATCCTCATGTGGTTCTCTTTTCCTTGACACAACAACAGGAACATCATGTAACAGAGAAAAAGGAAGAGCAGCCAACTCCCATGAATGCATTCGAGTTGATTTCAATGTCAAAAGGACTCAACCTTGGGAATCTCTTCGATGAACAGGTTACCGACTATGAACTTCGATTTTTATTTGTTACTTATGTTGCATGTTTTGGAACTTTTGTTTGATTTTGCATGGTTTTTGTGCCATGAATTACATCAGTGTATAGTTGTACTTCTCAGTAGGATATGCTATAATGAAGTTTCATGTGAATGTCAAAGACTTAATGCTTACTTGGTAACCATTGAATAATTCTTTGTTCATTCCCAAACACTCTAAATAACAATGGGAAAGAAGTAAAGATTCTATGATGTGTAGTAAAACTAGTACCTTCGCATTTACATAAAATAATAGACGTCTTCTAACAGACATGAGCCTAAATGCCCTGAGTTGAGCTAACCTGCTAAATTCATCAAGTTTAGCTGTTAAATAAGCGCTAGATGCTTCAAAATGCTGCGGCAATATTGCATGCATACACAAACTAACTTCCATCTCTTTCTCCTGTGTGTTGAATTCCGTTATCCATTTTACAGAAGGCTTTTAGATTATTATTCAGAATTCTCAGTTTTTGATTTGCAGCTAAGTAATCTCATATGAGTGAGGATGCAAATCCACTAATTAAAAAATGAAAAAACTGTTAAAGGACTAATTACAGAAAAATGAATTCCTAAGTTCATTTTACTCCCTGTCTGAATAAAACTGACCTTTCTTTATTACTCTACTCAAAAAACTTGGTCTCTTTTCCCGAATGGCCATTTTTCCCACCAACAATTCAAATCAATATAAATTGGTATTCCACCTTGTCGGAGAAATTGATGATTTGTGTATTGCTATAATATTACTTCATTCACAGATGTTTTGATTCCGACATTCACAGGAATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGGCATGTAGATTCCTAATAAAGTTAAATTAATTCGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAATATCATAATCCT</genome_strand>
        <mrna_strand>ACAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG.......................................................................................................................................GTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAA....................................................................................ATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACA....................................................................................................CGTATCACCATCTCAGAAATTCTGGAGGATGAGTGGTTCAAGAAAGATTATAAATCTCCCATTTTTAATGAGAAAGGAGATGCCAACCTGGATGATGTTGAAGCTGTCTTCAAGGATTCTGAA...........................................................................................................GAACATCATGTAACAGAGAAAAAGGAAGAGCAGCCAACTCCCATGAATGCATTCGAGTTGATTTCAATGTCAAAAGGACTCAACCTTGGGAATCTCTTCGATGAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAG........................................................................................ATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG.................................................................................................................................................GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334083" ref_strand="+" ref_description="SGN-U334083        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G26980.2 | Symbol: None | CBL-interacting protein kinase 3 (CIPK3), identical to CBL-interacting protein kinase 3 (Arabidopsis thaliana) gi:9280638:gb:AAF86507 | chr2:11522089-11525401 REVERSE | Aliases: None (evalue: 9e-37, score=150) genbank/nr: gi|62857008|dbj|BAD95889.1| Ser/Thr protein kinase [Lotus corniculatus var. japonicus] (evalue: 2e-37, score=159)">
      <seq>tcaattactacaaaacaatctttgtatagttgtgtggctgtggtacaaataaaccatcttgagattccattggaagaggttaaaaaaaaaagactatttcatttttttatagttgttatctttgttgttgggagaatatttacaattattacagcaacattagaatttcaagatttggatgttgccttcttttcaacttaccatatatttgtccaaatttttgaggatttctaagctgctgtaatcaatcttttttgacccccaaacaacaaaggctgcaactttcatacttcatctttatctttatcttggccaacaccccatttcaaaatttcagctcaaataaaaggttctttaagaaggattacgcctgcattctttaaaggactgtgcaagtatctcagttatgaatcangcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="74001" stop="71644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73701" g_stop="73359" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71944" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="483" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-U334083" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73701" e_stop="73359"/>
          <exon e_start="72083" e_stop="71944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTACTACAAAACAATCTTTGTATAGTTGTGTGGCTGTGGTACAAATAAACCATCTTGAGATTCCATTGGAAGAGGTTAAAAAAAAAAGACTATTTCATTTTTTTATAGTTGTTATCTTTGTTGTTGGGAGAATATTTACAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAA</genome_strand>
        <mrna_strand>TCAATTACTACAAAACAATCTTTGTATAGTTGTGTGGCTGTGGTACAAATAAACCATCTTGAGATTCCATTGGAAGAGGTTAAAAAAAAAAGACTATTTCATTTTTTTATAGTTGTTATCTTTGTTGTTGGGAGAATATTTACAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCANGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313032" ref_strand="+" ref_description="SGN-U313032        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ctccccctcctccttaaacaaataacagaactgaataaacaaacttgtgttttttcttattccatttctgttatccttattgtcccttccaagatataccttctaacttttcctatttctaaaggaagtaagaaaggtcgaaagttcttgttcgggacctcttttgtttaactttctagcactttgattgttgtggtattttgttgtagtgactgctccttttatgtattctttcttgaacattttgtcttggcttcttctctctccctatgttttctttttttcgaactgcttttacttgagccgagggtgtattggaagcaacctctcgatctcctaaggtaggggtaaggtctgcctacagactccccttcccagactgggcatgttgttggtggaagaagcgattatgatggaaacttccttcaggaataaatccatcactcgttccactgtcaagatgcaagttggggtttctttttgtggtgcagttagtcaagttgtgttggaatatcaattttataattttttgtgatgggtcttggaattctgtgagtgcatgaaatgaacataaagattagtattttatgttaggaactcagatgtcttatggatgttttaatcattgtgcagtaaaaggttctttaagaaggattacgcctgcattctttgaaggactgtgcaagtatctcagttatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73015" stop="71671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72715" g_stop="71971" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-U313032" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72715" e_stop="71971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATT-CATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAG</genome_strand>
        <mrna_strand>CTCCCCCTCCTCCTTAAACAAATAACAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCTAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTCGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTGCTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGCCTACAGACTCCCCTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGATGCAAGTTGGGGTTTCTTTTTGTGGTGCAGTTAGTCAAGTTGTGTTGGAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATGAACATAAAGATTAGTATTTTATGTTAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTGAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346135" ref_strand="+" ref_description="SGN-U346135        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 3e-06, score=55.5)">
      <seq>tcaatacggaagaaaacatgaagagtttcatcatgctttttctttttgctgtgacaatttttttcactttgtttgaccattcactaggtgatgatcctaaattttgtccaggaactttcacagttaatgacgtatgtgctaatattagttgtggatatcaagctgtatttcattggccagcaagtaaaatgcctcatagttgtgtttgtactgcttcgggaagcaatcaaagtctttgtacttgtcaaattgtttgtgatgcaaaataatgtaataaaagtgcttattattgatgttgattcagtaattgtatgtatcgattgaatgattgagaataaataataacgtataatatgaaaaacgttaaaaattgagaaaccaaaaaaaaaaaaaaaataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="91590" stop="92697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91890" g_stop="91976" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91977" i_stop="92098" i_length="122">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92099" g_stop="92412" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="401" r_length="314" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-U346135" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91890" e_stop="91976"/>
          <exon e_start="92099" e_stop="92412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATACGGAAGAAAACATGAAGAGTTTCATCATGCTTTTTCTTTTTGCTGTGACAATTTTTTTCACTTTGTTTGACCATTCACTAGGTACATTTTTTCCTTCAACACATATGAAATTATTTTATCTACAATCTGAAAATATTTATTTTCATCATTTATCTTTTTAATCATATAGTTTGATGTGTACTCTTTTCATTATTTTGTATCAGGTGATGATCCTAAATTTTGTCCAGGAACTTTCACAGTTAATGACGTATGTGCTAATATTAGTTGTGGATATCAAGCTGTATTTCATTGGCCAGCAAGTAAAATGCCTCATAGTTGTGTTTGTACTGCTTCGGGAAGCAATCAAAGTCTTTGTACTTGTCAAATTGTTTGTGATGCAAAATAATGTAATAAAAGTGCTTATTATTGATGTTGATTCAGTAATTGTATGTATCGATTGAATGATTGAGAATAAATAATAACGTATAATATGAAAAACGTTAAAAATTGAGAAACCAAAATAGCATCTAAAAGCTAC</genome_strand>
        <mrna_strand>TCAATACGGAAGAAAACATGAAGAGTTTCATCATGCTTTTTCTTTTTGCTGTGACAATTTTTTTCACTTTGTTTGACCATTCACTAG..........................................................................................................................GTGATGATCCTAAATTTTGTCCAGGAACTTTCACAGTTAATGACGTATGTGCTAATATTAGTTGTGGATATCAAGCTGTATTTCATTGGCCAGCAAGTAAAATGCCTCATAGTTGTGTTTGTACTGCTTCGGGAAGCAATCAAAGTCTTTGTACTTGTCAAATTGTTTGTGATGCAAAATAATGTAATAAAAGTGCTTATTATTGATGTTGATTCAGTAATTGTATGTATCGATTGAATGATTGAGAATAAATAATAACGTATAATATGAAAAACGTTAAAAATTGAGAAACCAAAAAAAAAAAAAAAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331960" ref_strand="+" ref_description="SGN-U331960        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: gi|47824994|gb|AAT38766.1| putative polyprotein [Solanum demissum] (evalue: 5e-40, score=165)">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="99616" stop="98623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99316" g_stop="98923" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-U331960" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99316" e_stop="98923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCATGAACTTCAACTTATTCTCTATTATTTGATTGCTGAAGATATGATAGTAAATGAAGCTTTTCAAGTGTCTGCAATGATCAAGAAGCTGTCTCCTTCGTGGAACGATTTCAAGAATTATCTAAAGCACAAGCGTAAGGAAATAAAGCTTAAAGATCTTTCGATTCGGCTCAAGATTGAGGAAGATAACAAAAACTCCGAAAAGAAGTCTCGTAAGAGTTCAACAATCATTGGAGTTCATATTGTTGAAGAAGC-CCTACCAAAGAAAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTTAGAACAGGCCAAGAAGAAATTCAAAAGCAACTGTTACAATTGTGGTAAGGCTGGCCATAGGTCTTTTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316409" ref_strand="+" ref_description="SGN-U316409        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | COP9 signalosome complex subunit 2 / CSN complex subunit 2 (CSN2), proteasome, COP9-complex and eIF3-domain protein; identical to CSN complex subunit 2 (Arabidopsis thaliana) GI:18056655; identical to cDNA CSN complex subunit 2 (CSN2) GI:18056654 | chr2:11526585-11529665 REVERSE | Aliases: T20P8.4, T20P8_4(evalue: 4e-64, score=241) genbank/nr: Proteasome(evalue: 3e-71, score=270)">
      <seq>gtcattctttaacaccccaccctgctttgatatcatgtgaaattaggtcttaggcatgattcacaacccaaaaactaactcaaaggaaggaggattgcccaaaccttataaggagttcacccatctcattaaccgtcgatgtggactttttgtcattctgtaacatgtgaaactaggttttagacctaacttacaccccaaaagctagctcaatggtggagcagattatgtctacatctgccaactcattcaacacggttaaagggggtacttggttctggcaaatatgctgatggagtctgaggttaacccttttgatggccaagaagcaaaaccgtacaaaaatgaccctgagatactggcaatgactaaccttatagcagcatatcaacgaaatgagatcttagagtttgagaaaattcttaagagtaatagaagaacaataatggatgatcccttcattagaaattacattgaagatcttttaagaaatgtcagaacccaagtgctgctgaagatcattaaaccttacacaagaatccggattcccttcatttccaaggagcttaatgtgccagaaaaagacgtcgaggagttgttggtctcactcatcttggacaaccgtatcaatgggcacattgatcaagtgaaccggttgctagaatgtggagatagatctaaaggaatgaagaaatacgctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="104162" stop="101861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103862" g_stop="103594" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103593" i_stop="103419" i_length="175">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103418" g_stop="103350" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="336" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103349" i_stop="103204" i_length="146">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103203" g_stop="103113" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="427" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103112" i_stop="103021" i_length="92">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103020" g_stop="102886" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="562" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102885" i_stop="102390" i_length="496">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102389" g_stop="102277" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="675" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102276" i_stop="102189" i_length="88">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102188" g_stop="102161" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="703" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-U316409" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103862" e_stop="103594"/>
          <exon e_start="103418" e_stop="103350"/>
          <exon e_start="103203" e_stop="103113"/>
          <exon e_start="103020" e_stop="102886"/>
          <exon e_start="102389" e_stop="102277"/>
          <exon e_start="102188" e_stop="102161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTCTTTAACACCCCACCATGCTTTGATACCATGTGAAATTAGGTCTTAGGCATAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAACCTTATAAGGAGTCCACCCATTTCATTAACCGCCAATGTGGGACTTTTTGTCATTCTTTAACATGTTAAATTAGATATTAGGCCTTACTGACACCCCAAAAGCTTAGCTCAATGGTGGAGCAGATTATGACTAAATCTGCCAACTCATTCAACACTGTTTAAGGGGGTGTGTCTCAGAATTTCTTAGCTGCATGTTAACATAATATTTATCTCTTTTCACTTTAGTTGTTAATGGTTCCTAGGCAATTCTCTTGCTGATTCACCTTCATTTCTCTCTCTTGCACGCCGCAGAAGAAACATTGGTCTGCCTGATATTGTGGTCACTTGGTTCCATCTTACAGGTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACCGTGAGCAGTTTAAGAGTTCTAATAATTTTCTTAATAAAGAGATTAGGACACGTACTCTTATCAGTTTTGTGGTTAGAGTCACTGGACCAAGTAATACGCATCAACTTAATTGCATTGGTGTTGGTACTGTGTTTTATACTTTTCAGGTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAGGTGCAACTATCAAAATATTGCTACTACAAGTCCTCCAATTCATAGTTACTATTGACTGTCATTCTGAATATGATTTCCTTGATGTTTTTCAGAGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAGGTAAATAGGCTTGTTAAAGTTTGCTATCTTGTTATGGAGTATTACAGGAGTTTCTTCCCCTAATATTGCTCTTAGCTTCTCAATCTTAAGACAGTGATTTGGGATGGGTGTGTGTGGAAGGACTGAACAAGGTGTTAGTTTATCAATTAACTCGTTATCTAAAACCGAGATAAACTCCTTTTTTATAACCAAGATTTTCCAAGGGCTAGTTATGCATCATTCAAGCTCTGTGGATAATGGGCCCTTCCCTCTACCCTGGACTTAAATACCAGATTTTTATTTCCAGAACAATGTGTGGTTAACCCACAAATCATGTGCTTTCTATCAATAAACTGTTTTATAGATGGCATAACGGTGCATATCACTTCATAATTGGAACAGTGCATACCATATAACATTTGAATTTGGAACATCCAGATAATATCCAGACATATTCTCCATGGTTCTCATAAGTAATAGACTTCCTAATTGGTTTCTATTAATTAATAACATGCAGGAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAACCGGTTGCTAGAATGTGGAGATAGGTGAAACCCTGAACTCGACATTGTGATAATTTCGCTGTTTTTGGCTGACATCACTTCTAATTTATTTTTCCTACTTTTATTCATGCAGATCTAAAGGAATGAAGAAATACGCTGCC</genome_strand>
        <mrna_strand>GTCATTCTTTAACACCCCACCCTGCTTTGATATCATGTGAAATTAGGTCTTAGGCATGATTCACAACCCAAAAACTAACTCAAAGGAAGGAGGATTGCCCAAACCTTATAAGGAGTTCACCCATCTCATTAACCGTCGATGT-GGACTTTTTGTCATTCTGTAACATGTGAAACTAGGTTTTAGACCTAACTTACACCCCAAAAGC-TAGCTCAATGGTGGAGCAGATTATGTCTACATCTGCCAACTCATTCAACACGGTTAAAGGGG...............................................................................................................................................................................GTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACC..................................................................................................................................................GTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAG............................................................................................AGTAATAGAAGAACAATAATGGATGATCCCTTCATTAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAACCTTACACAAGAATCCGGATTCCCTTCATTTCCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTAATGTGCCAGAAAAAGACGTCGAGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAACCGGTTGCTAGAATGTGGAGATAG........................................................................................ATCTAAAGGAATGAAGAAATACGCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="2578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="35"/>
            <exon e_start="1311" e_stop="1445"/>
            <exon e_start="1730" e_stop="1879"/>
            <exon e_start="2183" e_stop="2578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="35" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36" i_stop="1310" i_length="1275"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1311" e_stop="1445" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.968">
            <gDNA_intron_boundary i_start="1446" i_stop="1729" i_length="284"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1730" e_stop="1879" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1880" i_stop="2182" i_length="303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2183" e_stop="2578" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="35"/>
              <exon start="1311" stop="1445"/>
              <exon start="1730" stop="1879"/>
              <exon start="2183" stop="2578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTTTGGTGCGTAGGCATGACATTGAATTCAAT : GTAGTTGTTGTCCAGATGAATGGAACAGATCATACATCAGAGACTATCCATGTACTTCACATCGGAAGGATGAGAATGAAACTATGTAAAGGGAAGACCAGCATAGCAAAAGAATACTATTCCACTTCAATGCAG : TTATGTGGCGTCCGAGGTGGTGGAAATGCTGCAGCTCAGGCAGCATTTTGGCAAGTAAAGACTGGACTCTCCTTTGTATTGGCGTTTGAAACGGAGAGAGAAAGAAATGCAGCCATTATGCTGGCCAGAAGATTTGCTTACGACTGCAAT : ATTATGCTATCTGGACCGGATGATAGAGCCACTCCTGGATCTTAAGAAAGCTACTATAATAAAAAGGTGTAATTATACTGACTCTGATGTATCTATAGGTGCTTTGTAGTAGTGAATATGCAGTAGGGTTGATTGTTGAGTGGCATTTTTTCACCACCTTCTTGTCTTCTCTTTATTTCTATCTTGATAAGCAAAGGCATTGTTTTTTGTGTCCCTAGCTCTATTTGATTGTAATGATTCTTTGCTCCTTGTTTCTTTGTTTTGTCAAGTGATTGTAATTGAGCTCAAACATACATTTGATTTTTGAATGGCTTGTAGTGATTGACTTGTGTTCTTCAAACAACAATCCTTTTTATGTTTGGATGAAATGATTATATAACTAAATCATGCTGAAGT</gDNA_template>
            <first_frame> K  L  W  C  V  G  M  T  L  N  S  M :   *  L  L  S  R  *  M  E  Q  I  I  H  Q  R  L  S  M  Y  F  T  S  E  G  *  E  *  N  Y  V  K  G  R  P  A  *  Q  K  N  T  I  P  L  Q  C  S :   Y  V  A  S  E  V  V  E  M  L  Q  L  R  Q  H  F  G  K  *  R  L  D  S  P  L  Y  W  R  L  K  R  R  E  K  E  M  Q  P  L  C  W  P  E  D  L  L  T  T  A  I :   L  C  Y  L  D  R  M  I  E  P  L  L  D  L  K  K  A  T  I  I  K  R  C  N  Y  T  D  S  D  V  S  I  G  A  L  *  *  *  I  C  S  R  V  D  C  *  V  A  F  F  H  H  L  L  V  F  S  L  F  L  S  *  *  A  K  A  L  F  F  V  S  L  A  L  F  D  C  N  D  S  L  L  L  V  S  L  F  C  Q  V  I  V  I  E  L  K  H  T  F  D  F  *  M  A  C  S  D  *  L  V  F  F  K  Q  Q  S  F  L  C  L  D  E  M  I  I  *  L  N  H  A  E   </first_frame>
            <second_frame>  S  F  G  A  *  A  *  H  *  I  Q   : C  S  C  C  P  D  E  W  N  R  S  Y  I  R  D  Y  P  C  T  S  H  R  K  D  E  N  E  T  M  *  R  E  D  Q  H  S  K  R  I  L  F  H  F  N  A   : V  M  W  R  P  R  W  W  K  C  C  S  S  G  S  I  L  A  S  K  D  W  T  L  L  C  I  G  V  *  N  G  E  R  K  K  C  S  H  Y  A  G  Q  K  I  C  L  R  L  Q   : Y  Y  A  I  W  T  G  *  *  S  H  S  W  I  L  R  K  L  L  *  *  K  G  V  I  I  L  T  L  M  Y  L  *  V  L  C  S  S  E  Y  A  V  G  L  I  V  E  W  H  F  F  T  T  F  L  S  S  L  Y  F  Y  L  D  K  Q  R  H  C  F  L  C  P  *  L  Y  L  I  V  M  I  L  C  S  L  F  L  C  F  V  K  *  L  *  L  S  S  N  I  H  L  I  F  E  W  L  V  V  I  D  L  C  S  S  N  N  N  P  F  Y  V  W  M  K  *  L  Y  N  *  I  M  L  K  </second_frame>
            <third_frame>   A  L  V  R  R  H  D  I  E  F  N  :  V  V  V  V  Q  M  N  G  T  D  H  T  S  E  T  I  H  V  L  H  I  G  R  M  R  M  K  L  C  K  G  K  T  S  I  A  K  E  Y  Y  S  T  S  M  Q  :  L  C  G  V  R  G  G  G  N  A  A  A  Q  A  A  F  W  Q  V  K  T  G  L  S  F  V  L  A  F  E  T  E  R  E  R  N  A  A  I  M  L  A  R  R  F  A  Y  D  C  N  :  I  M  L  S  G  P  D  D  R  A  T  P  G  S  *  E  S  Y  Y  N  K  K  V  *  L  Y  *  L  *  C  I  Y  R  C  F  V  V  V  N  M  Q  *  G  *  L  L  S  G  I  F  S  P  P  S  C  L  L  F  I  S  I  L  I  S  K  G  I  V  F  C  V  P  S  S  I  *  L  *  *  F  F  A  P  C  F  F  V  L  S  S  D  C  N  *  A  Q  T  Y  I  *  F  L  N  G  L  *  *  L  T  C  V  L  Q  T  T  I  L  F  M  F  G  *  N  D  Y  I  T  K  S  C  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3" stop="35"/>
                    <exon start="1311" stop="1445"/>
                    <exon start="1730" stop="1879"/>
                    <exon start="2183" stop="2227"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALVRRHDIEFNVVVVQMNGTDHTSETIHVLHIGRMRMKLCKGKTSIAKEYYSTSMQLCGVRGGGNAAAQAAFWQVKTGLSFVLAFETERERNAAIMLARRFAYDCNIMLSGPDDRATPGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="39478" PGL_stop="39872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39478" e_stop="39872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="39478" e_stop="39872" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39478" stop="39872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATTGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAATGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  V  N  E  A  F  Q  V  A  A  M  I  E  K  L  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  R  N  A  E  K  K  S  R  K  S  S  T  I  I  G  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  N  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  L  F  K  W  L  Q  *  L  R  S  C  L  L  R  G  M  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  G  S  R  L  R  K  I  T  E  M  P  K  R  S  R  V  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  T  G  R  S  Q  N  R  P  R  R  N  S  K  A  T  V  I  I  V  A  M  L  V  I  D  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  G  T  S  T  Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  *  E  V  A  S  F  V  E  *  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  A  Q  D  *  G  R  *  Q  K  C  R  K  E  V  A  *  E  F  N  N  H  W  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  Q  R  A  E  V  R  T  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  C  W  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39478" stop="39870"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVQELQLILHDLIAEDMVVNEAFQVAAMIEKLPPSWNDFKNYLKHKRKEMKLEDLVIRLKIEEDNRNAEKKSRKSSTIIGVNIVEEAPTKDKKRKKSNGQKSEQAKKKFKGNCYNCGNAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="48362" PGL_stop="48698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48362" e_stop="48698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="48362" e_stop="48698" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48362" stop="48698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCGACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTATATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  D  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  N  S  L  V  S  V  R  D  T  P  I  P  H  I  H  Y  S  S  C  V  G  T  *  H  S  D  P  L  Y  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  R  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  I  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  I  P  L  V  S  V  R  D  T  P  I  P  Y  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  R  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  V  R  L  S  I  L  T  S  F  K  I  H  Y  L  *  F  S  C  V  G  T  *  H  S  D  P  S  Y  S  L  F  L  L  C  R  Y  V  T  L  R  S  P  I  S  T  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0029C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="50265" PGL_stop="49503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50265" e_stop="49503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="50265" e_stop="49503" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50265" stop="49503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTCGATGGAAAAAGTGAGGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAAGGTGAACAAGTCTTGTTGAAAGTTTCACCCATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTGGGGGAGGTGGCTTATGAGTTAGACTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCGGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAGATACCCACATCTGTTTAAAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTATTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTAATGTAACGACCCGTTTAGTCGTTTTGAGCAGCAGACTTTATTTCTGGAAAAACTGGCAGAAGCGACGGACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGATACTAAAAATCGACTCTCT</gDNA_template>
            <first_frame> G  F  D  G  K  S  E  V  Y  S  R  K  A  S  S  G  A  K  *  T  K  R  I  C  R  S  K  G  *  R  L  R  V  H  G  R  *  T  S  L  V  E  S  F  T  H  E  R  G  D  A  V  W  *  K  G  *  T  K  S  K  V  H  W  T  I  *  S  T  *  A  S  G  G  G  G  L  *  V  R  L  A  S  R  A  V  R  S  T  S  G  I  P  C  V  D  V  E  K  I  P  W  G  W  K  L  H  Y  P  L  G  F  S  F  A  *  *  E  L  V  L  *  G  G  A  C  C  Y  F  R  *  R  S  S  Q  V  E  V  K  R  D  C  I  H  Q  G  A  M  E  E  S  T  G  *  R  S  H  L  G  E  G  G  G  Y  A  R  K  I  P  T  S  V  *  R  F  R  Y  S  F  S  P  L  F  S  L  F  *  S  F  G  D  E  R  W  V  N  W  Y  L  M  *  R  P  V  *  S  F  *  A  A  D  F  I  S  G  K  T  G  R  S  D  G  P  H  D  G  P  S  W  A  R  R  T  V  A  G  S  R  F  K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  </first_frame>
            <second_frame>  D  S  M  E  K  V  R  S  I  Q  E  K  L  L  A  A  Q  S  R  Q  K  E  Y  A  D  R  K  V  R  D  L  E  F  M  E  G  E  Q  V  L  L  K  V  S  P  M  K  G  V  M  R  F  G  K  R  G  K  L  S  P  R  Y  I  G  P  F  E  V  L  K  R  V  G  E  V  A  Y  E  L  D  L  P  P  G  L  S  G  V  H  P  V  F  H  V  S  M  L  K  R  Y  H  G  D  G  N  Y  I  I  R  W  D  S  V  L  L  D  E  N  L  S  Y  E  E  E  P  V  A  I  L  D  R  E  V  R  K  L  R  S  R  E  I  A  S  I  K  V  Q  W  K  N  R  P  V  E  E  A  T  W  E  K  E  A  D  M  R  E  R  Y  P  H  L  F  K  D  S  G  T  P  F  R  P  C  F  P  Y  F  D  R  S  G  T  N  D  G  *  I  G  I  *  C  N  D  P  F  S  R  F  E  Q  Q  T  L  F  L  E  K  L  A  E  A  T  D  P  T  T  D  R  H  G  H  D  G  P  S  Q  G  L  V  S  K  H  L  E  N  L  K  L  D  T  K  N  R  L  S </second_frame>
            <third_frame>   I  R  W  K  K  *  G  L  F  K  K  S  F  *  R  R  K  V  D  K  K  N  M  Q  I  E  R  L  E  T  *  S  S  W  K  V  N  K  S  C  *  K  F  H  P  *  K  G  *  C  G  L  V  K  G  V  N  *  V  Q  G  T  L  D  H  L  K  Y  L  S  E  W  G  R  W  L  M  S  *  T  C  L  Q  G  C  P  E  Y  I  R  Y  S  M  C  R  C  *  K  D  T  M  G  M  E  T  T  L  S  V  G  I  Q  F  C  L  M  R  T  C  L  M  R  R  S  L  L  L  F  *  I  E  K  F  A  S  *  G  Q  E  R  L  H  P  S  R  C  N  G  R  I  D  R  L  K  K  P  L  G  R  R  R  R  I  C  E  K  D  T  H  I  C  L  K  I  Q  V  L  L  F  A  L  V  F  L  I  L  I  V  R  G  R  T  M  G  K  L  V  S  N  V  T  T  R  L  V  V  L  S  S  R  L  Y  F  W  K  N  W  Q  K  R  R  T  P  R  R  T  V  M  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  I  L  K  I  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50264" stop="49680"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSMEKVRSIQEKLLAAQSRQKEYADRKVRDLEFMEGEQVLLKVSPMKGVMRFGKRGKLSPRYIGPFEVLKRVGEVAYELDLPPGLSGVHPVFHVSMLKRYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVRKLRSREIASIKVQWKNRPVEEATWEKEADMRERYPHLFKDSGTPFRPCFPYFDRSGTNDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="50326" PGL_stop="50502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50326" e_stop="50502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="50326" e_stop="50502" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50326" stop="50502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0029C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="51807" PGL_stop="54516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51807" e_stop="54516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="51807" e_stop="54516" e_length="2710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51807" stop="52519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52396" stop="53152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53005" stop="53563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53009" stop="54445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54084" stop="54516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATATCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCAGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCATCGAAGGCACTTGGGTAGTGTCGTCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAAGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTCCAACTACCACAGACTCACCCACCGGAGTAGAGACACGGATAGGCATACCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACACTGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGTTATTAGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGGTCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGAGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAATTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTTGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAACTCGTGACAGTCAACCAGAAAATCATAGGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTAAAATCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGTTCGTCCTCTCCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTCACCGTTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  S  H  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  E  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  Q  R  K  E  T  M  R  T  G  L  G  V  *  S  P  S  H  T  N  G  S  V  P  S  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  P  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  P  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  H  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  L  L  P  R  P  P  R  P  P  E  K  R  P  L  P  *  P  P  L  P  L  V  I  R  G  L  *  L  G  L  G  Q  F  L  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  V  I  C  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  F  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  R  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  N  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  K  I  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  V  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  V  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  T  V  V  L  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  I  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  Q  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  R  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  S  K  A  L  G  *  C  R  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  K  E  R  R  R  C  G  P  D  W  E  C  S  H  P  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  R  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  R  H  G  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  T  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  Y  Y  L  D  H  H  A  L  Q  K  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  C  N  L  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  R  S  Y  A  P  R  R  S  V  D  R  S  E  E  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  L  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  L  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  D  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  T  R  D  S  Q  P  E  N  H  R  H  P  P  I  Q  H  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  L  L  K  S  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  G  E  S  L  P  *  Y  Q  M  G  *  V  F  V  L  S  L  *  R  T  S  S  H  D  L  Y  H  G  P  S  P  L  F  F </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  W  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  I  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  R  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  H  R  R  H  L  G  S  V  V  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  P  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  H  *  R  V  C  P  K  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  V  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  S  N  Y  H  R  L  T  H  R  S  R  D  T  D  R  H  T  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  L  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  P  S  R  K  T  A  S  T  M  T  T  S  T  S  S  Y  *  G  S  V  T  W  S  G  T  I  S  P  N  M  S  N  L  P  T  S  I  T  F  F  G  V  G  H  M  P  L  G  E  V  L  T  G  L  R  R  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  I  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  *  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  G  I  L  R  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  F  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  R  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  G  S  H  C  P  S  I  R  W  A  R  C  S  S  S  P  S  R  G  R  P  P  T  T  S  T  T  A  P  H  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52071" stop="52310"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPISHSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54293" stop="54514"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWRFLILHLFSFPILPFSYYFLSRWGSHCPSIRWARCSSSPSRGRPPTTSTTAPHRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54318" stop="54515"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGVSSFCTCSVSPSSPSLITSSVGGGVTALVSDGLGVRPLPLEDVLPRPLPRPLTVVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54038" stop="54238"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIIGILRFSTLEDRRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52003" stop="52200"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53547" stop="53741"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRSLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="53822" PGL_stop="52379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53822" e_stop="53650"/>
            <exon e_start="52905" e_stop="52379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.084" e_score="0.913"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="53822" e_stop="53650" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.084">
            <gDNA_intron_boundary i_start="53649" i_stop="52906" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="52905" e_stop="52379" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53822" stop="53650"/>
              <exon start="52905" stop="52379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGACGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCTTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCCTTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGACGACACTACCCAAGTGCCTTCGATGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCTCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R :   N  G  *  F  *  R  D  S  G  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  S  Q  S  G  P  H  R  L  L  S  L  C  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  Q  G  R  H  Y  P  S  A  F  D  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  L  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  L  G  T  D  P  L  V  W  E  G  D  Y  T  P  N  P  V  R  I  V  S  F  L  C  A  R  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  M  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  S  R  S  *  E  S  *  K  H  N  F  K  S  Y  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  G  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  M  I  L  T  *  F  W  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  G  K  *  L  V  K  G  V  *  L  S  W  H  I  S  R  T  T  L  P  K  C  L  R  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  I  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53821" stop="53650"/>
                    <exon start="52905" stop="52646"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKLGTDPLVWEGDYTPNPVRIVSFLCARKMISKGCLAFLAHLKDDTTQVPSMSRFQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52718" stop="52380"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVFSFLGTSQGRHYPSAFDESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMALAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="54809" PGL_stop="54523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54809" e_stop="54523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="54809" e_stop="54523" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54809" stop="54523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGATCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTCTCCTTGAGAGGCTATAAGACTTTAGGAAAAATTTCACTCTTTCATTCTCTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTGGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACGGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  I  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  L  L  E  R  L  *  D  F  R  K  N  F  T  L  S  F  S  L  S  C  Y  Y  L  S  P  I  G  I  W  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  V  N  T  N  T  G  Q  T  R  N  N  G  A  S  H  W  G  C   </first_frame>
            <second_frame>  *  V  R  *  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  I  S  L  F  H  S  L  F  R  A  T  T  *  V  Q  L  V  S  G  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  S  T  P  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </second_frame>
            <third_frame>   R  F  V  D  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  S  P  *  E  A  I  R  L  *  E  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  R  S  Q  P  L  G  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0029C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="57824" PGL_stop="57279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57824" e_stop="57279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="57824" e_stop="57279" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57824" stop="57279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57714" stop="57346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGACGTATGCCTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAGAAATATTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAAAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAAAAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACTGGTTGGGCCATCTCGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGGCACACCTT</gDNA_template>
            <first_frame> K  S  P  V  V  S  W  I  Q  D  E  *  W  R  R  M  P  S  *  *  C  Y  N  A  Y  N  I  K  R  K  E  I  F  F  *  F  G  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  K  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  K  K  V  Y  *  F  *  *  F  Y  H  L  A  *  L  V  G  P  S  R  I  *  Y  D  A  Q  N  H  *  E  F  T  W  A  H  L </first_frame>
            <second_frame>  N  P  Q  L  S  V  G  F  K  M  S  N  G  D  V  C  L  L  D  S  A  T  T  H  T  I  L  K  E  K  K  Y  F  S  N  L  V  M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  K  K  K  I  V  H  E  K  L  P  A  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  K  K  R  F  T  N  F  N  D  F  I  I  W  H  D  W  L  G  H  L  G  F  N  M  M  R  K  I  I  E  N  S  H  G  H  T   </second_frame>
            <third_frame>   I  P  S  C  Q  L  D  S  R  *  V  M  E  T  Y  A  F  L  I  V  L  Q  R  I  Q  Y  *  K  K  R  N  I  F  L  I  W  L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  K  K  G  L  L  I  L  M  I  L  S  F  G  M  T  G  W  A  I  S  D  L  I  *  C  A  K  S  L  R  I  H  M  G  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57823" stop="57281"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPQLSVGFKMSNGDVCLLDSATTHTILKEKKYFSNLVMKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETANEGKVEYLYITTINVKKKIVHEKLPAFSSGLYYTSISTVESHAVVKKRFTNFNDFIIWHDWLGHLGFNMMRKIIENSHGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="59122" PGL_stop="58359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59122" e_stop="58359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="59122" e_stop="58359" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59122" stop="58359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACGTTATCAGCACGAGATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTACTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTAAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCCGACGGTGAAAGATCCACTTGAATTGTGGACTGATTTAAACGGGAGATATGACCACCTAAAGGCAACAATGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACACGTTGGAAAAGACACTTACTACTTTTCATGCCTTGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTCAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATATGGTGGAATCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGATATAATAATGCACGGGGACGTGGAAA</gDNA_template>
            <first_frame> N  T  L  S  A  R  D  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  S  L  I  I  F  I  M  S  N  L  S  K  L  E  F  V  A  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  A  T  K  G  L  D  A  T  I  T  Q  G  N  E  A  S  S  K  D  K  A  K  A  M  I  F  L  R  H  H  L  D  E  G  L  K  I  E  Y  P  T  V  K  D  P  L  E  L  W  T  D  L  N  G  R  Y  D  H  L  K  A  T  M  L  P  R  A  R  Y  E  W  M  H  L  R  F  Q  D  F  K  T  V  I  E  Y  N  S  A  V  F  R  I  T  S  Q  L  K  L  C  G  E  T  I  K  D  E  D  T  L  E  K  T  L  T  T  F  H  A  L  N  V  I  L  Q  Q  Q  Y  R  E  K  G  F  Q  K  Y  S  Q  L  I  S  C  L  L  V  A  E  Q  H  N  A  L  L  M  K  N  H  E  A  R  P  T  G  A  A  P  L  P  E  A  N  M  V  E  S  R  D  Q  S  E  V  K  R  D  D  H  R  G  Y  N  N  A  R  G  R  G   </first_frame>
            <second_frame>  T  R  Y  Q  H  E  I  A  T  C  K  G  T  I  *  I  F  L  F  N  S  H  I  L  S  *  F  S  L  C  R  I  Y  P  N  L  S  L  W  H  *  I  F  L  E  R  I  I  F  H  G  Y  S  M  L  R  F  T  W  L  L  K  V  L  M  P  L  L  L  R  E  M  K  H  R  V  K  I  R  R  R  L  *  F  S  F  V  I  I  L  M  R  A  *  R  L  N  I  R  R  *  K  I  H  L  N  C  G  L  I  *  T  G  D  M  T  T  *  R  Q  Q  C  C  Q  E  L  V  M  S  G  C  I  Y  G  F  K  I  L  R  P  *  L  N  T  T  L  L  Y  S  G  *  P  P  S  *  N  Y  V  G  R  L  *  K  M  R  T  R  W  K  R  H  L  L  L  F  M  P  *  M  *  Y  C  S  S  N  I  V  K  R  V  F  R  N  I  L  N  *  S  H  V  F  W  W  L  S  N  I  M  L  F  *  *  K  I  M  K  L  V  P  L  E  L  L  H  Y  R  R  Q  I  W  W  N  H  V  I  N  L  K  *  K  E  M  I  I  G  D  I  I  M  H  G  D  V  E  </second_frame>
            <third_frame>   H  V  I  S  T  R  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  F  S  H  N  F  H  Y  V  E  F  I  Q  T  *  V  C  G  I  R  Y  F  W  K  E  L  S  F  M  G  T  R  C  *  D  S  L  G  Y  *  R  S  *  C  H  Y  Y  S  G  K  *  S  I  E  *  R  *  G  E  G  Y  D  F  P  S  S  S  S  *  *  G  P  E  D  *  I  S  D  G  E  R  S  T  *  I  V  D  *  F  K  R  E  I  *  P  P  K  G  N  N  V  A  K  S  S  L  *  V  D  A  F  T  V  S  R  F  *  D  R  N  *  I  Q  L  C  C  I  Q  D  N  L  P  V  E  I  M  W  G  D  Y  K  R  *  G  H  V  G  K  D  T  Y  Y  F  S  C  L  E  C  D  I  A  A  A  I  S  *  K  G  F  S  E  I  F  S  T  N  L  M  S  F  G  G  *  A  T  *  C  S  F  N  E  K  S  *  S  S  S  H  W  S  C  S  I  T  G  G  K  Y  G  G  I  T  *  S  I  *  S  K  K  R  *  S  S  G  I  *  *  C  T  G  T  W  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59062" stop="58361"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTYSLIIFIMSNLSKLEFVALDISGKNYLSWVLDAEIHLATKGLDATITQGNEASSKDKAKAMIFLRHHLDEGLKIEYPTVKDPLELWTDLNGRYDHLKATMLPRARYEWMHLRFQDFKTVIEYNSAVFRITSQLKLCGETIKDEDTLEKTLTTFHALNVILQQQYREKGFQKYSQLISCLLVAEQHNALLMKNHEARPTGAAPLPEANMVESRDQSEVKRDDHRGYNNARGRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="73701" PGL_stop="65742"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73701" e_stop="73359"/>
            <exon e_start="72083" e_stop="71850"/>
            <exon e_start="71597" e_stop="71535"/>
            <exon e_start="70304" e_stop="70233"/>
            <exon e_start="70021" e_stop="69914"/>
            <exon e_start="69804" e_stop="69724"/>
            <exon e_start="69014" e_stop="68961"/>
            <exon e_start="68825" e_stop="68700"/>
            <exon e_start="68615" e_stop="68526"/>
            <exon e_start="68425" e_stop="68303"/>
            <exon e_start="68195" e_stop="68088"/>
            <exon e_start="67272" e_stop="67159"/>
            <exon e_start="67070" e_stop="67014"/>
            <exon e_start="66868" e_stop="66794"/>
            <exon e_start="66095" e_stop="65742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73701" e_stop="73359" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.957">
            <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72083" e_stop="71850" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71597" e_stop="71535" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.892">
            <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70304" e_stop="70233" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.955" acc_prob="0.990">
            <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70021" e_stop="69914" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69804" e_stop="69724" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="0.964">
            <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69014" e_stop="68961" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68825" e_stop="68700" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.859" acc_prob="0.882">
            <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="68615" e_stop="68526" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.802" acc_prob="0.974">
            <gDNA_intron_boundary i_start="68525" i_stop="68426" i_length="100"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68425" e_stop="68303" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.944" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68302" i_stop="68196" i_length="107"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="68195" e_stop="68088" e_length="108"/>
          </exon>
          <intron i_serial="11" don_prob="0.990" acc_prob="0.981">
            <gDNA_intron_boundary i_start="68087" i_stop="67273" i_length="815"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="67272" e_stop="67159" e_length="114"/>
          </exon>
          <intron i_serial="12" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="67070" e_stop="67014" e_length="57"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="66868" e_stop="66794" e_length="75"/>
          </exon>
          <intron i_serial="14" don_prob="0.934" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698"/>
          </intron>
          <exon e_serial="15" e_score="0.975">
            <gDNA_exon_boundary e_start="66095" e_stop="65742" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73701" stop="73359"/>
              <exon start="72083" stop="71944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73560" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68303"/>
              <exon start="68195" stop="68088"/>
              <exon start="67272" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313031" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTACTACAAAACAATCTTTGTATAGTTGTGTGGCTGTGGTACAAATAAACCATCTTGAGATTCCATTGGAAGAGGTTAAAAAAAAAAGACTATTTCATTTTTTTATAGTTGTTATCTTTGTTGTTGGGAGAATATTTACAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA : TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG : ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAG : GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT : GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG : CCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG : GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG : GTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAA : ATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACA : CGTATCACCATCTCAGAAATTCTGGAGGATGAGTGGTTCAAGAAAGATTATAAATCTCCCATTTTTAATGAGAAAGGAGATGCCAACCTGGATGATGTTGAAGCTGTCTTCAAGGATTCTGAA : GAACATCATGTAACAGAGAAAAAGGAAGAGCAGCCAACTCCCATGAATGCATTCGAGTTGATTTCAATGTCAAAAGGACTCAACCTTGGGAATCTCTTCGATGAACAG : GAATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAG : ATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG : GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG : TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAATATCATAATCCT</gDNA_template>
            <first_frame> S  I  T  T  K  Q  S  L  Y  S  C  V  A  V  V  Q  I  N  H  L  E  I  P  L  E  E  V  K  K  K  R  L  F  H  F  F  I  V  V  I  F  V  V  G  R  I  F  T  I  I  T  A  T  L  E  F  Q  D  L  D  V  A  F  F  S  T  Y  H  I  F  V  Q  I  F  E  D  F  *  A  A  V  I  N  L  F  *  P  P  N  N  K  G  C  N  F  H  T  S  S  L  S  L  S  W  P  T  P  H  F  K  I  S  A  Q   : I  K  G  S  L  R  R  I  T  P  A  F  F  K  G  L  C  K  Y  L  S  Y  E  S  G  K  N  Q  A  Q  S  W  *  I  *  N  G  K  D  N  W  *  G  N  I  C  *  S  *  V  C  E  E  F  G  D  R  R  S  C  S  D  Q  D  S  *  *  G  *  G  P  *  A  Q  N  G  *  A   : D  K  A  G  D  S  Y  N  E  V  N  *  T  S  T  C  R  S  V  I  R   : G  V  G  *  Q  D  K  D  I  H  C  S  G  V  R  Y  R  R  R  A  L  *  Q  N   : C  K  S  W  T  D  A  *  K  R  S  K  E  I  L  S  A  A  Y  *  C  C  *  L  L  S  *  Q  G  S  L  P  *  R  F  K   : A  *  E  F  T  L  G  C  Q  W  K  P  Q  G  F  *  F  W  I  E  C  S  V  P  A  S  Q   : G  *  W  L  T  P  H  H  M  W  N  S  Q  L  C  C  S  *   : G  T  Q  R  S  W  I  *  W  Y  N  R  G  S  V  V  V  R  S  H  T  L  C  I  A  C  R  L  L  A  F  *  *  L  Q  S  Y  *  P  V  *  K   : N  L  C  C  *  I  Y  M  S  S  L  D  V  F  W  C  Y  E  V  N  Y  S  H  L  G  S  E  P  Y  D   : T  Y  H  H  L  R  N  S  G  G  *  V  V  Q  E  R  L  *  I  S  H  F  *  *  E  R  R  C  Q  P  G  *  C  *  S  C  L  Q  G  F  *   : R  T  S  C  N  R  E  K  G  R  A  A  N  S  H  E  C  I  R  V  D  F  N  V  K  R  T  Q  P  W  E  S  L  R  *  T   : G  I  *  E  R  N  K  V  H  I  *  M  L  G  Q  *  N  Y  Q  *  D  *  R  S  C  K  A  P  R  F  *  C  S  Q  K  E  L  Q   : D  E  T  *  K  C  Q  S  W  K  K  R  E  P  *  C  C  H  *   : G  I  S  S  C  P  F  S  S  Y  G  *  S  P  K  G  K  R  R  Y  F  G  I  P  Q   : V  L  Q  E  S  F  D  *  S  R  G  C  S  V  E  N  *  R  G  H  A  S  *  V  V  L  L  P  *  T  A  I  A  *  A  F  A  G  P  T  I  C  V  K  N  F  A  T  C  F  F  L  S  L  F  F  V  I  W  S  V  L  C  S  G  T  F  F  S  H  E  L  M  A  N  C  S  I  S  S  W  S  R  T  F  V  P  I  *  F  D  L  Q  F  V  *  Q  I  Y  T  F  E  K  C  I  Q  L  F  S  P  L  K  K  K  I  S  *  S  </first_frame>
            <second_frame>  Q  L  L  Q  N  N  L  C  I  V  V  W  L  W  Y  K  *  T  I  L  R  F  H  W  K  R  L  K  K  K  D  Y  F  I  F  L  *  L  L  S  L  L  L  G  E  Y  L  Q  L  L  Q  Q  H  *  N  F  K  I  W  M  L  P  S  F  Q  L  T  I  Y  L  S  K  F  L  R  I  S  K  L  L  *  S  I  F  F  D  P  Q  T  T  K  A  A  T  F  I  L  H  L  Y  L  Y  L  G  Q  H  P  I  S  K  F  Q  L  K  :  *  K  V  L  *  E  G  L  R  L  H  S  L  K  D  C  A  S  I  S  V  M  N  Q  A  K  I  K  R  R  V  G  K  Y  E  M  G  R  T  I  G  E  G  T  F  A  K  V  K  F  A  R  N  S  E  T  G  E  A  V  A  I  K  I  L  D  K  D  K  V  L  K  H  K  M  A  E  Q  :  I  K  R  E  I  A  T  M  K  L  I  R  H  P  H  V  V  Q  L  Y  E  :  V  L  A  S  K  T  K  I  F  I  V  L  E  F  V  T  G  G  E  L  F  D  K  I  :  V  N  H  G  R  M  H  E  K  E  A  R  K  Y  F  Q  Q  L  I  N  A  V  D  Y  C  H  S  R  G  V  Y  H  R  D  L  K  :  P  E  N  L  L  L  D  V  N  G  N  L  K  V  S  D  F  G  L  S  A  L  S  Q  Q  V  R  :  D  D  G  L  L  H  T  T  C  G  T  P  N  Y  V  A  P  E  :  V  L  N  D  H  G  Y  D  G  T  T  A  D  L  W  S  C  G  V  I  L  F  V  L  L  A  G  Y  L  P  F  D  D  S  N  L  I  N  L  Y  K  K  :  I  S  A  A  E  F  T  C  P  P  W  M  S  F  G  A  M  K  L  I  T  R  I  L  D  P  N  P  M  T  :  R  I  T  I  S  E  I  L  E  D  E  W  F  K  K  D  Y  K  S  P  I  F  N  E  K  G  D  A  N  L  D  D  V  E  A  V  F  K  D  S  E  :  E  H  H  V  T  E  K  K  E  E  Q  P  T  P  M  N  A  F  E  L  I  S  M  S  K  G  L  N  L  G  N  L  F  D  E  Q  :  E  F  K  R  E  T  R  F  T  S  K  C  S  A  N  E  I  I  S  K  I  E  E  A  A  K  P  L  G  F  D  V  H  K  K  N  Y  K  :  M  R  L  E  N  V  K  A  G  R  K  G  N  L  N  V  A  T  E  :  V  F  Q  V  A  P  S  L  H  M  V  E  V  R  K  A  K  G  D  T  L  E  F  H  K  :  F  Y  K  N  L  S  T  S  L  E  D  V  V  W  K  T  E  E  D  M  Q  A  R  *  Y  Y  Y  H  E  L  Q  L  H  K  L  L  L  V  P  Q  S  V  *  K  T  L  Q  L  V  S  F  F  P  F  F  L  S  F  G  L  F  F  V  V  G  L  F  S  P  M  S  *  W  P  T  V  L  F  H  H  G  V  G  L  L  F  L  F  D  L  I  C  S  L  Y  N  K  Y  T  L  L  R  N  V  Y  N  S  S  A  P  S  R  K  K  Y  H  N  P </second_frame>
            <third_frame>   N  Y  Y  K  T  I  F  V  *  L  C  G  C  G  T  N  K  P  S  *  D  S  I  G  R  G  *  K  K  K  T  I  S  F  F  Y  S  C  Y  L  C  C  W  E  N  I  Y  N  Y  Y  S  N  I  R  I  S  R  F  G  C  C  L  L  F  N  L  P  Y  I  C  P  N  F  *  G  F  L  S  C  C  N  Q  S  F  L  T  P  K  Q  Q  R  L  Q  L  S  Y  F  I  F  I  F  I  L  A  N  T  P  F  Q  N  F  S  S  N :   K  R  F  F  K  K  D  Y  A  C  I  L  *  R  T  V  Q  V  S  Q  L  *  I  R  Q  K  S  S  A  E  L  V  N  M  K  W  E  G  Q  L  V  R  E  H  L  L  K  L  S  L  R  G  I  R  R  Q  E  K  L  *  R  S  R  F  L  I  R  I  R  S  L  S  T  K  W  L  S  R :   *  S  G  R  *  L  Q  *  S  *  L  D  I  H  M  S  F  S  Y  T  R :   C  W  L  A  R  Q  R  Y  S  L  F  W  S  S  L  Q  A  E  S  S  L  T  K  L :   *  I  M  D  G  C  M  K  K  K  Q  G  N  T  F  S  S  L  L  M  L  L  I  I  V  I  A  G  E  S  T  I  E  I  *  S :   L  R  I  Y  S  W  M  S  M  E  T  S  R  F  L  I  L  D  *  V  L  C  P  S  K  S  G :   M  M  A  Y  S  T  P  H  V  E  L  P  T  M  L  L  L  R :   Y  S  T  I  M  D  M  M  V  Q  P  R  I  C  G  R  A  E  S  Y  S  L  Y  C  L  Q  V  T  C  L  L  M  T  P  I  L  L  T  C  I  K  K :   S  L  L  L  N  L  H  V  L  L  G  C  L  L  V  L  *  S  *  L  L  A  S  W  I  R  T  L  *  H :   V  S  P  S  Q  K  F  W  R  M  S  G  S  R  K  I  I  N  L  P  F  L  M  R  K  E  M  P  T  W  M  M  L  K  L  S  S  R  I  L  K :   N  I  M  *  Q  R  K  R  K  S  S  Q  L  P  *  M  H  S  S  *  F  Q  C  Q  K  D  S  T  L  G  I  S  S  M  N  R :   N  L  R  E  K  Q  G  S  H  L  N  A  R  P  M  K  L  S  V  R  L  K  K  L  Q  S  P  S  V  L  M  F  T  K  R  T  T  R :   *  D  L  K  M  S  K  L  E  E  K  G  T  L  M  L  P  L  R :   Y  F  K  L  P  L  L  F  I  W  L  K  S  E  R  Q  K  E  I  L  W  N  S  T  S :   S  T  R  I  F  R  L  V  *  R  M  *  C  G  K  L  K  R  T  C  K  L  G  S  I  T  T  M  N  C  N  C  I  S  F  C  W  S  H  N  L  C  K  K  L  C  N  L  F  L  S  F  P  F  F  C  H  L  V  C  S  L  *  W  D  F  F  L  P  *  A  N  G  Q  L  F  Y  F  I  M  E  *  D  F  C  S  Y  L  I  *  F  A  V  C  I  T  N  I  H  F  *  E  M  Y  T  T  L  Q  P  P  Q  E  K  N  I  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72068" stop="71850"/>
                    <exon start="71597" stop="71535"/>
                    <exon start="70304" stop="70233"/>
                    <exon start="70021" stop="69914"/>
                    <exon start="69804" stop="69724"/>
                    <exon start="69014" stop="68961"/>
                    <exon start="68825" stop="68700"/>
                    <exon start="68615" stop="68526"/>
                    <exon start="68425" stop="68303"/>
                    <exon start="68195" stop="68088"/>
                    <exon start="67272" stop="67159"/>
                    <exon start="67070" stop="67014"/>
                    <exon start="66868" stop="66794"/>
                    <exon start="66095" stop="66024"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1359</number_coding_nucleotides>
                  <number_encoded_amino_acids>453</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGLRLHSLKDCASISVMNQAKIKRRVGKYEMGRTIGEGTFAKVKFARNSETGEAVAIKILDKDKVLKHKMAEQIKREIATMKLIRHPHVVQLYEVLASKTKIFIVLEFVTGGELFDKIVNHGRMHEKEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDVNGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDHGYDGTTADLWSCGVILFVLLAGYLPFDDSNLINLYKKISAAEFTCPPWMSFGAMKLITRILDPNPMTRITISEILEDEWFKKDYKSPIFNEKGDANLDDVEAVFKDSEEHHVTEKKEEQPTPMNAFELISMSKGLNLGNLFDEQEFKRETRFTSKCSANEIISKIEEAAKPLGFDVHKKNYKMRLENVKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73701" stop="73468"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITTKQSLYSCVAVVQINHLEIPLEEVKKKRLFHFFIVVIFVVGRIFTIITATLEFQDLDVAFFSTYHIFVQIFEDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72715" e_stop="71971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="72715" e_stop="71971" e_length="745"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72715" stop="71971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313032" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAG</gDNA_template>
            <first_frame> L  P  L  L  L  K  Q  I  A  E  L  N  K  Q  T  C  V  F  S  Y  S  F  L  L  S  L  L  S  L  P  R  Y  T  F  *  L  F  L  F  Q  K  E  V  R  K  V  E  S  S  C  *  G  P  L  L  F  N  F  L  A  L  *  L  L  W  Y  F  V  V  V  T  T  P  F  M  Y  S  F  L  N  I  L  S  W  L  L  L  S  P  Y  V  F  F  F  S  N  C  F  Y  L  S  R  G  C  I  G  S  N  L  S  I  S  *  G  R  G  K  V  C  L  Q  T  P  L  P  R  L  G  M  L  L  V  E  E  A  I  M  M  E  T  S  F  R  N  K  S  I  T  R  S  T  V  K  L  Q  V  G  V  S  F  D  G  A  V  S  Q  V  V  L  K  Y  Q  F  Y  N  F  L  *  W  V  L  E  F  C  E  C  M  K  *  T  *  R  L  V  F  Y  V  R  N  S  D  V  L  W  M  F  *  S  L  C  S  K  R  F  F  K  K  D  Y  A  C  I  L  *  R  T  V  Q  V  S  Q  L  *  I  R  Q  K  S  S  A  E  L  V  N  M  K  W  E  </first_frame>
            <second_frame>  S  P  S  S  L  N  K  *  Q  N  *  I  N  K  L  V  F  F  L  I  H  F  C  Y  P  Y  C  P  F  Q  D  I  P  S  N  F  S  Y  F  K  R  K  *  E  R  S  K  V  L  V  R  D  L  F  C  L  T  F  *  H  F  D  C  C  G  I  L  L  *  *  L  L  L  L  C  I  L  S  *  T  F  C  L  G  F  F  S  L  P  M  F  S  F  F  R  T  A  F  T  *  A  E  G  V  L  E  A  T  S  R  S  P  K  V  G  V  R  S  V  Y  R  L  H  F  P  D  W  A  C  C  W  W  K  K  R  L  *  W  K  L  P  S  G  I  N  P  S  L  V  P  L  S  S  C  K  L  G  F  L  L  M  V  Q  L  V  K  L  C  *  N  I  N  F  I  I  F  C  D  G  S  W  N  S  V  S  A  *  N  K  H  K  D  *  Y  F  M  S  G  T  Q  M  S  Y  G  C  F  N  H  C  A  V  K  G  S  L  R  R  I  T  P  A  F  F  K  G  L  C  K  Y  L  S  Y  E  S  G  K  N  Q  A  Q  S  W  *  I  *  N  G  K </second_frame>
            <third_frame>   P  P  P  P  *  T  N  S  R  T  E  *  T  N  L  C  F  F  L  F  I  S  V  I  L  I  V  P  S  K  I  Y  L  L  T  F  P  I  S  K  G  S  K  K  G  R  K  F  L  L  G  T  S  F  V  *  L  S  S  T  L  I  V  V  V  F  C  C  S  D  Y  S  F  Y  V  F  F  L  E  H  F  V  L  A  S  S  L  S  L  C  F  L  F  F  E  L  L  L  L  E  P  R  V  Y  W  K  Q  P  L  D  L  L  R  *  G  *  G  L  S  T  D  S  T  S  Q  T  G  H  V  V  G  G  R  S  D  Y  D  G  N  F  L  Q  E  *  I  H  H  S  F  H  C  Q  A  A  S  W  G  F  F  *  W  C  S  *  S  S  C  V  E  I  S  I  L  *  F  F  V  M  G  L  G  I  L  *  V  H  E  I  N  I  K  I  S  I  L  C  Q  E  L  R  C  L  M  D  V  L  I  I  V  Q  *  K  V  L  *  E  G  L  R  L  H  S  L  K  D  C  A  S  I  S  V  M  N  Q  A  K  I  K  R  R  V  G  K  Y  E  M  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72376" stop="72182"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRGKVCLQTPLPRLGMLLVEEAIMMETSFRNKSITRSTVKLQVGVSFDGAVSQVVLKYQFYNFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="91890" PGL_stop="92412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91890" e_stop="91976"/>
            <exon e_start="92099" e_stop="92412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91890" e_stop="91976" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91977" i_stop="92098" i_length="122"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="92099" e_stop="92412" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91890" stop="91976"/>
              <exon start="92099" stop="92412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346135" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATACGGAAGAAAACATGAAGAGTTTCATCATGCTTTTTCTTTTTGCTGTGACAATTTTTTTCACTTTGTTTGACCATTCACTAG : GTGATGATCCTAAATTTTGTCCAGGAACTTTCACAGTTAATGACGTATGTGCTAATATTAGTTGTGGATATCAAGCTGTATTTCATTGGCCAGCAAGTAAAATGCCTCATAGTTGTGTTTGTACTGCTTCGGGAAGCAATCAAAGTCTTTGTACTTGTCAAATTGTTTGTGATGCAAAATAATGTAATAAAAGTGCTTATTATTGATGTTGATTCAGTAATTGTATGTATCGATTGAATGATTGAGAATAAATAATAACGTATAATATGAAAAACGTTAAAAATTGAGAAACCAAAATAGCATCTAAAAGCTAC</gDNA_template>
            <first_frame> S  I  R  K  K  T  *  R  V  S  S  C  F  F  F  L  L  *  Q  F  F  S  L  C  L  T  I  H  *  :  V  M  I  L  N  F  V  Q  E  L  S  Q  L  M  T  Y  V  L  I  L  V  V  D  I  K  L  Y  F  I  G  Q  Q  V  K  C  L  I  V  V  F  V  L  L  R  E  A  I  K  V  F  V  L  V  K  L  F  V  M  Q  N  N  V  I  K  V  L  I  I  D  V  D  S  V  I  V  C  I  D  *  M  I  E  N  K  *  *  R  I  I  *  K  T  L  K  I  E  K  P  K  *  H  L  K  A   </first_frame>
            <second_frame>  Q  Y  G  R  K  H  E  E  F  H  H  A  F  S  F  C  C  D  N  F  F  H  F  V  *  P  F  T  R :   *  *  S  *  I  L  S  R  N  F  H  S  *  *  R  M  C  *  Y  *  L  W  I  S  S  C  I  S  L  A  S  K  *  N  A  S  *  L  C  L  Y  C  F  G  K  Q  S  K  S  L  Y  L  S  N  C  L  *  C  K  I  M  *  *  K  C  L  L  L  M  L  I  Q  *  L  Y  V  S  I  E  *  L  R  I  N  N  N  V  *  Y  E  K  R  *  K  L  R  N  Q  N  S  I  *  K  L  </second_frame>
            <third_frame>   N  T  E  E  N  M  K  S  F  I  M  L  F  L  F  A  V  T  I  F  F  T  L  F  D  H  S  L   : G  D  D  P  K  F  C  P  G  T  F  T  V  N  D  V  C  A  N  I  S  C  G  Y  Q  A  V  F  H  W  P  A  S  K  M  P  H  S  C  V  C  T  A  S  G  S  N  Q  S  L  C  T  C  Q  I  V  C  D  A  K  *  C  N  K  S  A  Y  Y  *  C  *  F  S  N  C  M  Y  R  L  N  D  *  E  *  I  I  T  Y  N  M  K  N  V  K  N  *  E  T  K  I  A  S  K  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91892" stop="91976"/>
                    <exon start="92099" stop="92280"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTEENMKSFIMLFLFAVTIFFTLFDHSLGDDPKFCPGTFTVNDVCANISCGYQAVFHWPASKMPHSCVCTASGSNQSLCTCQIVCDAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92099" stop="92335"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMILNFVQELSQLMTYVLILVVDIKLYFIGQQVKCLIVVFVLLREAIKVFVLVKLFVMQNNVIKVLIIDVDSVIVCID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="99316" PGL_stop="98923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99316" e_stop="98923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="99316" e_stop="98923" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99316" stop="98923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCATGAACTTCAACTTATTCTCTATTATTTGATTGCTGAAGATATGATAGTAAATGAAGCTTTTCAAGTGTCTGCAATGATCAAGAAGCTGTCTCCTTCGTGGAACGATTTCAAGAATTATCTAAAGCACAAGCGTAAGGAAATAAAGCTTAAAGATCTTTCGATTCGGCTCAAGATTGAGGAAGATAACAAAAACTCCGAAAAGAAGTCTCGTAAGAGTTCAACAATCATTGGAGTTCATATTGTTGAAGAAGCCCTACCAAAGAAAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTTAGAACAGGCCAAGAAGAAATTCAAAAGCAACTGTTACAATTGTGGTAAGGCTGGCCATAGGTCTTTTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  H  E  L  Q  L  I  L  Y  Y  L  I  A  E  D  M  I  V  N  E  A  F  Q  V  S  A  M  I  K  K  L  S  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  I  K  L  K  D  L  S  I  R  L  K  I  E  E  D  N  K  N  S  E  K  K  S  R  K  S  S  T  I  I  G  V  H  I  V  E  E  A  L  P  K  K  K  R  E  R  S  P  T  G  R  S  *  N  R  P  R  R  N  S  K  A  T  V  T  I  V  V  R  L  A  I  G  L  L  </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  M  N  F  N  L  F  S  I  I  *  L  L  K  I  *  *  *  M  K  L  F  K  C  L  Q  *  S  R  S  C  L  L  R  G  T  I  S  R  I  I  *  S  T  S  V  R  K  *  S  L  K  I  F  R  F  G  S  R  L  R  K  I  T  K  T  P  K  R  S  L  V  R  V  Q  Q  S  L  E  F  I  L  L  K  K  P  Y  Q  R  K  K  E  K  E  V  Q  R  A  E  V  R  T  G  Q  E  E  I  Q  K  Q  L  L  Q  L  W  *  G  W  P  *  V  F  * </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  *  T  S  T  Y  S  L  L  F  D  C  *  R  Y  D  S  K  *  S  F  S  S  V  C  N  D  Q  E  A  V  S  F  V  E  R  F  Q  E  L  S  K  A  Q  A  *  G  N  K  A  *  R  S  F  D  S  A  Q  D  *  G  R  *  Q  K  L  R  K  E  V  S  *  E  F  N  N  H  W  S  S  Y  C  *  R  S  P  T  K  E  K  K  R  K  K  S  N  G  Q  K  L  E  Q  A  K  K  K  F  K  S  N  C  Y  N  C  G  K  A  G  H  R  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99316" stop="98990"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVHELQLILYYLIAEDMIVNEAFQVSAMIKKLSPSWNDFKNYLKHKRKEIKLKDLSIRLKIEEDNKNSEKKSRKSSTIIGVHIVEEALPKKKRERSPTGRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="103862" PGL_stop="102161"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103862" e_stop="103594"/>
            <exon e_start="103418" e_stop="103350"/>
            <exon e_start="103203" e_stop="103113"/>
            <exon e_start="103020" e_stop="102886"/>
            <exon e_start="102389" e_stop="102277"/>
            <exon e_start="102188" e_stop="102161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="0.903"/>
          <exon-intron don_prob="0.919" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="0.985"/>
          <exon-intron don_prob="0.919" acc_prob="1.000" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="103862" e_stop="103594" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103593" i_stop="103419" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103418" e_stop="103350" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.919" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103349" i_stop="103204" i_length="146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103203" e_stop="103113" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.987">
            <gDNA_intron_boundary i_start="103112" i_stop="103021" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="103020" e_stop="102886" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="102885" i_stop="102390" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="102389" e_stop="102277" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.919" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102276" i_stop="102189" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102188" e_stop="102161" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103862" stop="103594"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103113"/>
              <exon start="103020" stop="102886"/>
              <exon start="102389" stop="102277"/>
              <exon start="102188" stop="102161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316409" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATTCTTTAACACCCCACCATGCTTTGATACCATGTGAAATTAGGTCTTAGGCATAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAACCTTATAAGGAGTCCACCCATTTCATTAACCGCCAATGTGGGACTTTTTGTCATTCTTTAACATGTTAAATTAGATATTAGGCCTTACTGACACCCCAAAAGCTTAGCTCAATGGTGGAGCAGATTATGACTAAATCTGCCAACTCATTCAACACTGTTTAAGGGG : GTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACC : GTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAG : AGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAG : GAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAACCGGTTGCTAGAATGTGGAGATAG : ATCTAAAGGAATGAAGAAATACGCTGCC</gDNA_template>
            <first_frame> V  I  L  *  H  P  T  M  L  *  Y  H  V  K  L  G  L  R  H  N  S  H  P  K  S  *  L  K  G  R  R  I  A  Q  T  L  *  G  V  H  P  F  H  *  P  P  M  W  D  F  L  S  F  F  N  M  L  N  *  I  L  G  L  T  D  T  P  K  A  *  L  N  G  G  A  D  Y  D  *  I  C  Q  L  I  Q  H  C  L  R  G :   Y  L  V  L  A  N  M  L  M  E  S  E  V  N  P  F  D  G  Q  E  A  K  P :   Y  K  N  D  P  E  I  L  A  M  T  N  L  I  A  A  Y  Q  R  N  E  I  L  E  F  E  K  I  L  K  :  S  N  R  R  T  I  M  D  D  P  F  I  R  N  Y  I  E  D  L  L  R  N  V  R  T  Q  V  L  L  K  I  I  K  P  Y  T  R  I  R  I  P  F  I  S  K  :  E  L  N  V  P  E  K  D  V  G  E  L  L  V  S  L  I  L  D  N  R  I  N  G  H  I  D  Q  V  N  R  L  L  E  C  G  D  R :   S  K  G  M  K  K  Y  A  A </first_frame>
            <second_frame>  S  F  F  N  T  P  P  C  F  D  T  M  *  N  *  V  L  G  I  T  H  T  P  K  A  S  S  K  G  G  G  L  P  K  P  Y  K  E  S  T  H  F  I  N  R  Q  C  G  T  F  C  H  S  L  T  C  *  I  R  Y  *  A  L  L  T  P  Q  K  L  S  S  M  V  E  Q  I  M  T  K  S  A  N  S  F  N  T  V  *  G   : G  T  W  F  W  Q  I  C  *  W  S  L  R  L  T  L  L  M  A  K  K  Q  N   : R  T  K  M  T  L  R  Y  W  Q  *  L  T  L  *  Q  H  I  N  E  M  R  S  *  S  L  R  K  F  L  R :   V  I  E  E  Q  *  W  M  I  P  S  S  E  I  T  L  K  I  F  *  E  M  S  E  P  K  C  C  *  R  S  L  S  L  T  Q  E  S  G  F  P  S  F  P  R :   S  L  M  C  Q  K  K  T  S  G  S  C  W  S  H  S  S  W  T  T  V  S  M  G  T  L  I  K  *  T  G  C  *  N  V  E  I   : D  L  K  E  *  R  N  T  L   </second_frame>
            <third_frame>   H  S  L  T  P  H  H  A  L  I  P  C  E  I  R  S  *  A  *  L  T  P  Q  K  L  A  Q  R  E  E  D  C  P  N  L  I  R  S  P  P  I  S  L  T  A  N  V  G  L  F  V  I  L  *  H  V  K  L  D  I  R  P  Y  *  H  P  K  S  L  A  Q  W  W  S  R  L  *  L  N  L  P  T  H  S  T  L  F  K  G  :  V  L  G  S  G  K  Y  A  D  G  V  *  G  *  P  F  *  W  P  R  S  K  T  :  V  Q  K  *  P  *  D  T  G  N  D  *  P  Y  S  S  I  S  T  K  *  D  L  R  V  *  E  N  S  *   : E  *  *  K  N  N  N  G  *  S  L  H  Q  K  L  H  *  R  S  F  K  K  C  Q  N  P  S  A  A  E  D  H  *  A  L  H  K  N  P  D  S  L  H  F  Q   : G  A  *  C  A  R  K  R  R  R  G  V  V  G  L  T  H  L  G  Q  P  Y  Q  W  A  H  *  S  S  E  P  V  A  R  M  W  R  *  :  I  *  R  N  E  E  I  R  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103625" stop="103594"/>
                    <exon start="103418" stop="103350"/>
                    <exon start="103203" stop="103113"/>
                    <exon start="103020" stop="102886"/>
                    <exon start="102389" stop="102277"/>
                    <exon start="102188" stop="102161"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICQLIQHCLRGYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLRNVRTQVLLKIIKPYTRIRIPFISKELNVPEKDVGELLVSLILDNRINGHIDQVNRLLECGDRSKGMKKYAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 69 chains have been computed
$ 
$ memory statistics:
$ 45688 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 2175 bytes was the average size of a spliced alignment
$ 21672 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1548 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 83 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:40:03
-->
