<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:34:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733033" ref_strand="+" ref_description="SGN-E733033 [LB03DB10]">
      <seq>cgcgagtgcaggcttggggaactatgttgaagctttggtgcgtaggcatgacattgaattcaatgtagttgttgtccagatgaatggaacagatcatacatcagagactatccatgtacttcacatcggaaggatgagaatgaaactatgtaaagggaagaccagcatagcaaaagaatactattccacttcaatgcagttatgtggcgtccgaggtggtggaaatgctgcagctcaggcagcattttggcaagtaaagactggactctcctttgtattggcgtttgaaacggagagagaaagaaatgcagccattatgctggccagaagatttgcttacgactgcaatattatgctatctggaccggatgatagagccactcctggatcttaagaaagctactataataaaaaggtgtaattatactgactctgatgtatctataggtgctttgtagtagtgaatatgcagtagggttgattgttgagtggcattttttcaccaccttcttgtcttctctttatttctatcttgataagcaaaggcattgttttttgtgtccctagctctatttgattgtaatgattctttgctccttgtttctttgttttgtcaagtgattgtaattgagctcaaacatacatttgatttttgaatggcttgtagtgattgacttgtgttcttcaaacaacaatcctttttatgtttggatgaaatgattatataactaaatcatgctgaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="1" stop="2880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="35" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="64" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36" i_stop="1310" i_length="1275">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1311" g_stop="1445" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="199" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1729" i_length="284">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1730" g_stop="1879" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="349" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1880" i_stop="2182" i_length="303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2183" g_stop="2580" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="747" r_length="398" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E733033" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="35"/>
          <exon e_start="1311" e_stop="1445"/>
          <exon e_start="1730" e_stop="1879"/>
          <exon e_start="2183" e_stop="2580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTGGTGCGTAGGCATGACATTGAATTCAATGTACGTTCAATTAAAAGTTTGCTCCTTTATTAGGAATTCCTCAATTAAGTTCTCTTTTCGCTAATCTACTACTTCTTCTAAGTCTCTTTTGATTGTTCTATATAGCTGTATTGTCTTTACAAATATGTCTCTGCGTCTAACTCTCAGTTCACCAATTTAAATCATCTTACTGCCTTGTAGTTTGTGTACTCCTCACTGACACATCATGTTATGCATAGGCTTATGTAATTAAAGAAATGAAAGTGTTCATCTTTAATATCTGAAGTTTGCCATTTTGGAAGAGATCAAATAGTAGATGAGGCGGTTACACATTCAAATAAGGTTGTCCACTGGTTGTATAAAGACTCCTGTAGGGGGTTTGTAAAGGGCTTTTCCAGCATTTTCCTTCTCTCATTCTCCTTGTGTTTTGTCCAGTTTAAGTGTGTAATCATCTCATCTAAATGTTTAAGCTATTAGAGAGAGCACACTTTTATTAGTTAATTATTTCTCAACATGCCCCCTCACGTGCGGGCTTGATTCTTTTCATGCGCCAAGCATGGGATTTTTTTTTATTTATTTGGGTGGCGGTGAGATTCGATCCCAAGATCTTTGTCTGCTTTGATACCACGTTGAAATCACTACAATAAAAATAACTTTTAGCGGCATTAAATATTGACATTAATAAAGAGTGCTAAAGTCTAAACCGGCATTAGTTAAGTGTCATTAGAACCAATGTCGTTAAAGGCTTTAGGGACATATACAAAGAATGTCAATTGCCGCTAAAAATACATATCTAGCGGCAATTAATTCATAATTGCCGCTAATGATTATTTTTGTTGTAATGAGCGTGTGACTACTCGTTTGAAAGCGTAAGCTATTAGAGAGAACACACTTTTATTAGTTAATTATATTCTCAACACATCCATTTCAACATTGCTCCAAAGAATTTAAAAATGATGTCAAAGCAGACAAAGGTCCTATGCTCCAACTGGACCCCCACCTGTTTTTAAACGAGTATTAACATGTTTTTACGCAAGGAAAAGAATCAGACTCATACGTGAAGCGGTGTATTTAGACATAATTAAATAAATAGAAGTGTCCATCCTCTAAGAATTTAAATTATTGGATAAGGAACATATTCAGCAAAACTATCCAGTTTCGAGAAGAACATAAAACTGAGAATGTTAATAAGAGTAAGATGGATTCCATCTTGGTATGTTGATGTTGCGTCATAGCTGCATTCGTCTTTCTCCAACTCCTTACTTGTATGTATATGTTTATTGGTGGTATTTGTAGGTAGTTGTTGTCCAGATGAATGGAACAGATCATACATCAGAGACTATCCATGTACTTCACATCGGAAGGATGAGAATGAAACTATGTAAAGGGAAGACCAGCATAGCAAAAGAATACTATTCCACTTCAATGCAGGTATTAATAATGCCTAGTCCCTTGCCATTTCTTTCATTTAGGTGTTGTGAGAATTTATATAGAATAATAGAAAGAGAACAATTACGTTCATGTATATATAACTAGCAAGGGATCGGACCGCCCTGCGTACAAATTTGTAGCACAAATAATAGGCCAAAGGACTACAATTTTTTGTTTTGGTTTTTTTGGCTTATTATGATGTTCAAATGTCTGGACTCGGGGATTTATGCTCTACAATTTGAACAGCTGCCAACACTCTTTCCCTAACTTATCTGTTACCACAGTTATGTGGCGTCCGAGGTGGTGGAAATGCTGCAGCTCAGGCAGCATTTTGGCAAGTAAAGACTGGACTCTCCTTTGTATTGGCGTTTGAAACGGAGAGAGAAAGAAATGCAGCCATTATGCTGGCCAGAAGATTTGCTTACGACTGCAATGTAAGTCTAGACTCGTTTTTTACTTTTGGCATCATTACATATCGTAGAACTTCTTAAAGTAGTTTCTAGTTTGTTAGTCTCCAGTACATCTACTGTAAGTCTAGATTTATCATTAAACAAGTATGTTTAATGATAAGGTCTTCTCGAAAAAGCCTCTACCTCCACGAGCTAGTCGTAAGGTCTGGGCATACTCTACCCTCCCCAAACCCCACATAGTGGGATTTCACTGGATATATTGTTATAAAAATATTGTTCTTGTTATCCAGTATGATCTCAGAAAACTTGTGCAACTTTAATTTGCAGATTATGCTATCTGGACCGGATGATAGAGCCACTCCTGGATCTTAAGAAAGCTACTATAATAAAAAGGTGTAATTATACTGACTCTGATGTATCTATAGGTGCTTTGTAGTAGTGAATATGCAGTAGGGTTGATTGTTGAGTGGCATTTTTTCACCACCTTCTTGTCTTCTCTTTATTTCTATCTTGATAAGCAAAGGCATTGTTTTTTGTGTCCCTAGCTCTATTTGATTGTAATGATTCTTTGCTCCTTGTTTCTTTGTTTTGTCAAGTGATTGTAATTGAGCTCAAACATACATTTGATTTTTGAATGGCTTGTAGTGATTGACTTGTGTTCTTCAAACAACAATCCTTTTTATGTTTGGATGAAATGATTATATAACTAAATCATGCTGAAGTTC</genome_strand>
        <mrna_strand>AAGCTTTGGTGCGTAGGCATGACATTGAATTCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGTTGTCCAGATGAATGGAACAGATCATACATCAGAGACTATCCATGTACTTCACATCGGAAGGATGAGAATGAAACTATGTAAAGGGAAGACCAGCATAGCAAAAGAATACTATTCCACTTCAATGCAG............................................................................................................................................................................................................................................................................................TTATGTGGCGTCCGAGGTGGTGGAAATGCTGCAGCTCAGGCAGCATTTTGGCAAGTAAAGACTGGACTCTCCTTTGTATTGGCGTTTGAAACGGAGAGAGAAAGAAATGCAGCCATTATGCTGGCCAGAAGATTTGCTTACGACTGCAAT...............................................................................................................................................................................................................................................................................................................ATTATGCTATCTGGACCGGATGATAGAGCCACTCCTGGATCTTAAGAAAGCTACTATAATAAAAAGGTGTAATTATACTGACTCTGATGTATCTATAGGTGCTTTGTAGTAGTGAATATGCAGTAGGGTTGATTGTTGAGTGGCATTTTTTCACCACCTTCTTGTCTTCTCTTTATTTCTATCTTGATAAGCAAAGGCATTGTTTTTTGTGTCCCTAGCTCTATTTGATTGTAATGATTCTTTGCTCCTTGTTTCTTTGTTTTGTCAAGTGATTGTAATTGAGCTCAAACATACATTTGATTTTTGAATGGCTTGTAGTGATTGACTTGTGTTCTTCAAACAACAATCCTTTTTATGTTTGGATGAAATGATTATATAACTAAATCATGCTGAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541419" ref_strand="+" ref_description="SGN-E541419 [TUS-62-D7](-)">
      <seq>atggagaccagacaacatcagtgacgactgctggtcctattgatccggctgcaggcttggggaactatgtgaaagctttggtgcgtaggcatgacattgaattcaatgtagttgttgtccagatgaatggaacagatcatacatcagagactatccatgtacttcacatcggaaggatgagaatgaaactatgtaaagggaagaccagcatagcaaaagaatactattccacttcaatgcagttatgtggcgtccgaggtggtggaaatgctgcagctcaggcagcattttggcaagtaaagactggactctcctttgtattggcgtttgaaacggagagagaaagaaatgcagccattatgctggccagaagatttgcttacgactgcaatattatgctatctggaccggatgatagagccactcctggatcttaagaaagctactataataaaaaggtgtaattatactgactctgatgtatctataggtgctttgtagtagtgaatatgcagtagggttgattgttgagtggcattttttcaccaccttcttgtcttctctttatttctatcttgataagcaaaggcattgttttttgtgtccctagctctatttgattgtaatgattctttgctccttgtttctttgttttgtcaagtgattgtaattgagctcaaacatacatttgatttttgaatggcttgtagtgattgacttgtgttcttcaaacaacaatcctttttatgtttggatgaaatgattatataactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="1" stop="2866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="35" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="107" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36" i_stop="1310" i_length="1275">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1311" g_stop="1445" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="242" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1729" i_length="284">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1730" g_stop="1879" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="392" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1880" i_stop="2182" i_length="303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2183" g_stop="2573" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="783" r_length="391" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E541419" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="35"/>
          <exon e_start="1311" e_stop="1445"/>
          <exon e_start="1730" e_stop="1879"/>
          <exon e_start="2183" e_stop="2573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTGGTGCGTAGGCATGACATTGAATTCAATGTACGTTCAATTAAAAGTTTGCTCCTTTATTAGGAATTCCTCAATTAAGTTCTCTTTTCGCTAATCTACTACTTCTTCTAAGTCTCTTTTGATTGTTCTATATAGCTGTATTGTCTTTACAAATATGTCTCTGCGTCTAACTCTCAGTTCACCAATTTAAATCATCTTACTGCCTTGTAGTTTGTGTACTCCTCACTGACACATCATGTTATGCATAGGCTTATGTAATTAAAGAAATGAAAGTGTTCATCTTTAATATCTGAAGTTTGCCATTTTGGAAGAGATCAAATAGTAGATGAGGCGGTTACACATTCAAATAAGGTTGTCCACTGGTTGTATAAAGACTCCTGTAGGGGGTTTGTAAAGGGCTTTTCCAGCATTTTCCTTCTCTCATTCTCCTTGTGTTTTGTCCAGTTTAAGTGTGTAATCATCTCATCTAAATGTTTAAGCTATTAGAGAGAGCACACTTTTATTAGTTAATTATTTCTCAACATGCCCCCTCACGTGCGGGCTTGATTCTTTTCATGCGCCAAGCATGGGATTTTTTTTTATTTATTTGGGTGGCGGTGAGATTCGATCCCAAGATCTTTGTCTGCTTTGATACCACGTTGAAATCACTACAATAAAAATAACTTTTAGCGGCATTAAATATTGACATTAATAAAGAGTGCTAAAGTCTAAACCGGCATTAGTTAAGTGTCATTAGAACCAATGTCGTTAAAGGCTTTAGGGACATATACAAAGAATGTCAATTGCCGCTAAAAATACATATCTAGCGGCAATTAATTCATAATTGCCGCTAATGATTATTTTTGTTGTAATGAGCGTGTGACTACTCGTTTGAAAGCGTAAGCTATTAGAGAGAACACACTTTTATTAGTTAATTATATTCTCAACACATCCATTTCAACATTGCTCCAAAGAATTTAAAAATGATGTCAAAGCAGACAAAGGTCCTATGCTCCAACTGGACCCCCACCTGTTTTTAAACGAGTATTAACATGTTTTTACGCAAGGAAAAGAATCAGACTCATACGTGAAGCGGTGTATTTAGACATAATTAAATAAATAGAAGTGTCCATCCTCTAAGAATTTAAATTATTGGATAAGGAACATATTCAGCAAAACTATCCAGTTTCGAGAAGAACATAAAACTGAGAATGTTAATAAGAGTAAGATGGATTCCATCTTGGTATGTTGATGTTGCGTCATAGCTGCATTCGTCTTTCTCCAACTCCTTACTTGTATGTATATGTTTATTGGTGGTATTTGTAGGTAGTTGTTGTCCAGATGAATGGAACAGATCATACATCAGAGACTATCCATGTACTTCACATCGGAAGGATGAGAATGAAACTATGTAAAGGGAAGACCAGCATAGCAAAAGAATACTATTCCACTTCAATGCAGGTATTAATAATGCCTAGTCCCTTGCCATTTCTTTCATTTAGGTGTTGTGAGAATTTATATAGAATAATAGAAAGAGAACAATTACGTTCATGTATATATAACTAGCAAGGGATCGGACCGCCCTGCGTACAAATTTGTAGCACAAATAATAGGCCAAAGGACTACAATTTTTTGTTTTGGTTTTTTTGGCTTATTATGATGTTCAAATGTCTGGACTCGGGGATTTATGCTCTACAATTTGAACAGCTGCCAACACTCTTTCCCTAACTTATCTGTTACCACAGTTATGTGGCGTCCGAGGTGGTGGAAATGCTGCAGCTCAGGCAGCATTTTGGCAAGTAAAGACTGGACTCTCCTTTGTATTGGCGTTTGAAACGGAGAGAGAAAGAAATGCAGCCATTATGCTGGCCAGAAGATTTGCTTACGACTGCAATGTAAGTCTAGACTCGTTTTTTACTTTTGGCATCATTACATATCGTAGAACTTCTTAAAGTAGTTTCTAGTTTGTTAGTCTCCAGTACATCTACTGTAAGTCTAGATTTATCATTAAACAAGTATGTTTAATGATAAGGTCTTCTCGAAAAAGCCTCTACCTCCACGAGCTAGTCGTAAGGTCTGGGCATACTCTACCCTCCCCAAACCCCACATAGTGGGATTTCACTGGATATATTGTTATAAAAATATTGTTCTTGTTATCCAGTATGATCTCAGAAAACTTGTGCAACTTTAATTTGCAGATTATGCTATCTGGACCGGATGATAGAGCCACTCCTGGATCTTAAGAAAGCTACTATAATAAAAAGGTGTAATTATACTGACTCTGATGTATCTATAGGTGCTTTGTAGTAGTGAATATGCAGTAGGGTTGATTGTTGAGTGGCATTTTTTCACCACCTTCTTGTCTTCTCTTTATTTCTATCTTGATAAGCAAAGGCATTGTTTTTTGTGTCCCTAGCTCTATTTGATTGTAATGATTCTTTGCTCCTTGTTTCTTTGTTTTGTCAAGTGATTGTAATTGAGCTCAAACATACATTTGATTTTTGAATGGCTTGTAGTGATTGACTTGTGTTCTTCAAACAACAATCCTTTTTATGTTTGGATGAAATGATTATATAACTAAATCATGCT</genome_strand>
        <mrna_strand>AAGCTTTGGTGCGTAGGCATGACATTGAATTCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGTTGTCCAGATGAATGGAACAGATCATACATCAGAGACTATCCATGTACTTCACATCGGAAGGATGAGAATGAAACTATGTAAAGGGAAGACCAGCATAGCAAAAGAATACTATTCCACTTCAATGCAG............................................................................................................................................................................................................................................................................................TTATGTGGCGTCCGAGGTGGTGGAAATGCTGCAGCTCAGGCAGCATTTTGGCAAGTAAAGACTGGACTCTCCTTTGTATTGGCGTTTGAAACGGAGAGAGAAAGAAATGCAGCCATTATGCTGGCCAGAAGATTTGCTTACGACTGCAAT...............................................................................................................................................................................................................................................................................................................ATTATGCTATCTGGACCGGATGATAGAGCCACTCCTGGATCTTAAGAAAGCTACTATAATAAAAAGGTGTAATTATACTGACTCTGATGTATCTATAGGTGCTTTGTAGTAGTGAATATGCAGTAGGGTTGATTGTTGAGTGGCATTTTTTCACCACCTTCTTGTCTTCTCTTTATTTCTATCTTGATAAGCAAAGGCATTGTTTTTTGTGTCCCTAGCTCTATTTGATTGTAATGATTCTTTGCTCCTTGTTTCTTTGTTTTGTCAAGTGATTGTAATTGAGCTCAAACATACATTTGATTTTTGAATGGCTTGTAGTGATTGACTTGTGTTCTTCAAACAACAATCCTTTTTATGTTTGGATGAAATGATTATATAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462301" ref_strand="+" ref_description="SGN-E462301 [cPRO-11-C8]">
      <seq>gcaggcttagggaactatgttgaagctttggtgcgtaggcatgacattgaattcaatgtggttgttgtccagatgaacggaacagatcatacatcagagactatccatgtccttcacattggaaggatgagaatgaaactatgtaaagggaagagcagtgtagcaaaagaatactattctacttcaatgcagttatgtggcgtcagaggtggtgggaatgctgcagctcaggcagcattttggcaagtaaagactggactctcctttgtattggcgtttgaaacggagagagaaagaaatgcagccattatgctggccagaagatttgcctatgactgcaatattatgctatctggaccggatgatagagccgctcctggatcttaagaaagctactataatgaaaagntgtaattatactgactctgatgtatctataagtggtttgtagtagtgaatatgccataagggtgattgttgagtggcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="1" stop="2632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="35" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="57" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36" i_stop="1310" i_length="1275">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1311" g_stop="1445" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="192" r_length="135" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1729" i_length="284">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1730" g_stop="1879" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="342" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1880" i_stop="2182" i_length="303">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2183" g_stop="2332" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="492" r_length="150" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E462301" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="35"/>
          <exon e_start="1311" e_stop="1445"/>
          <exon e_start="1730" e_stop="1879"/>
          <exon e_start="2183" e_stop="2332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTGGTGCGTAGGCATGACATTGAATTCAATGTACGTTCAATTAAAAGTTTGCTCCTTTATTAGGAATTCCTCAATTAAGTTCTCTTTTCGCTAATCTACTACTTCTTCTAAGTCTCTTTTGATTGTTCTATATAGCTGTATTGTCTTTACAAATATGTCTCTGCGTCTAACTCTCAGTTCACCAATTTAAATCATCTTACTGCCTTGTAGTTTGTGTACTCCTCACTGACACATCATGTTATGCATAGGCTTATGTAATTAAAGAAATGAAAGTGTTCATCTTTAATATCTGAAGTTTGCCATTTTGGAAGAGATCAAATAGTAGATGAGGCGGTTACACATTCAAATAAGGTTGTCCACTGGTTGTATAAAGACTCCTGTAGGGGGTTTGTAAAGGGCTTTTCCAGCATTTTCCTTCTCTCATTCTCCTTGTGTTTTGTCCAGTTTAAGTGTGTAATCATCTCATCTAAATGTTTAAGCTATTAGAGAGAGCACACTTTTATTAGTTAATTATTTCTCAACATGCCCCCTCACGTGCGGGCTTGATTCTTTTCATGCGCCAAGCATGGGATTTTTTTTTATTTATTTGGGTGGCGGTGAGATTCGATCCCAAGATCTTTGTCTGCTTTGATACCACGTTGAAATCACTACAATAAAAATAACTTTTAGCGGCATTAAATATTGACATTAATAAAGAGTGCTAAAGTCTAAACCGGCATTAGTTAAGTGTCATTAGAACCAATGTCGTTAAAGGCTTTAGGGACATATACAAAGAATGTCAATTGCCGCTAAAAATACATATCTAGCGGCAATTAATTCATAATTGCCGCTAATGATTATTTTTGTTGTAATGAGCGTGTGACTACTCGTTTGAAAGCGTAAGCTATTAGAGAGAACACACTTTTATTAGTTAATTATATTCTCAACACATCCATTTCAACATTGCTCCAAAGAATTTAAAAATGATGTCAAAGCAGACAAAGGTCCTATGCTCCAACTGGACCCCCACCTGTTTTTAAACGAGTATTAACATGTTTTTACGCAAGGAAAAGAATCAGACTCATACGTGAAGCGGTGTATTTAGACATAATTAAATAAATAGAAGTGTCCATCCTCTAAGAATTTAAATTATTGGATAAGGAACATATTCAGCAAAACTATCCAGTTTCGAGAAGAACATAAAACTGAGAATGTTAATAAGAGTAAGATGGATTCCATCTTGGTATGTTGATGTTGCGTCATAGCTGCATTCGTCTTTCTCCAACTCCTTACTTGTATGTATATGTTTATTGGTGGTATTTGTAGGTAGTTGTTGTCCAGATGAATGGAACAGATCATACATCAGAGACTATCCATGTACTTCACATCGGAAGGATGAGAATGAAACTATGTAAAGGGAAGACCAGCATAGCAAAAGAATACTATTCCACTTCAATGCAGGTATTAATAATGCCTAGTCCCTTGCCATTTCTTTCATTTAGGTGTTGTGAGAATTTATATAGAATAATAGAAAGAGAACAATTACGTTCATGTATATATAACTAGCAAGGGATCGGACCGCCCTGCGTACAAATTTGTAGCACAAATAATAGGCCAAAGGACTACAATTTTTTGTTTTGGTTTTTTTGGCTTATTATGATGTTCAAATGTCTGGACTCGGGGATTTATGCTCTACAATTTGAACAGCTGCCAACACTCTTTCCCTAACTTATCTGTTACCACAGTTATGTGGCGTCCGAGGTGGTGGAAATGCTGCAGCTCAGGCAGCATTTTGGCAAGTAAAGACTGGACTCTCCTTTGTATTGGCGTTTGAAACGGAGAGAGAAAGAAATGCAGCCATTATGCTGGCCAGAAGATTTGCTTACGACTGCAATGTAAGTCTAGACTCGTTTTTTACTTTTGGCATCATTACATATCGTAGAACTTCTTAAAGTAGTTTCTAGTTTGTTAGTCTCCAGTACATCTACTGTAAGTCTAGATTTATCATTAAACAAGTATGTTTAATGATAAGGTCTTCTCGAAAAAGCCTCTACCTCCACGAGCTAGTCGTAAGGTCTGGGCATACTCTACCCTCCCCAAACCCCACATAGTGGGATTTCACTGGATATATTGTTATAAAAATATTGTTCTTGTTATCCAGTATGATCTCAGAAAACTTGTGCAACTTTAATTTGCAGATTATGCTATCTGGACCGGATGATAGAGCCACTCCTGGATCTTAAGAAAGCTACTATAATAAAAAGGTGTAATTATACTGACTCTGATGTATCTATAGGTGCTTTGTAGTAGTGAATATGCAGTAGGGTTGATTGTTGAGTGGCATTTTT</genome_strand>
        <mrna_strand>AAGCTTTGGTGCGTAGGCATGACATTGAATTCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGTTGTCCAGATGAACGGAACAGATCATACATCAGAGACTATCCATGTCCTTCACATTGGAAGGATGAGAATGAAACTATGTAAAGGGAAGAGCAGTGTAGCAAAAGAATACTATTCTACTTCAATGCAG............................................................................................................................................................................................................................................................................................TTATGTGGCGTCAGAGGTGGTGGGAATGCTGCAGCTCAGGCAGCATTTTGGCAAGTAAAGACTGGACTCTCCTTTGTATTGGCGTTTGAAACGGAGAGAGAAAGAAATGCAGCCATTATGCTGGCCAGAAGATTTGCCTATGACTGCAAT...............................................................................................................................................................................................................................................................................................................ATTATGCTATCTGGACCGGATGATAGAGCCGCTCCTGGATCTTAAGAAAGCTACTATAATGAAAAGNTGTAATTATACTGACTCTGATGTATCTATAAGTGGTTTGTAGTAGTGAATATGCCATAAGGGTGATTGTTGAGTGGCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561781" ref_strand="+" ref_description="SGN-E561781 [19134]">
      <seq>ctttattattctactaccccttttctcctccttctgttctaccttttcttgattttttttatttttcaacaagaatcttgatttttctttgtttaatatggggatttgctttggtaaacctgttaagcttgctcatgcctcttctagtttgatgtctgattctagaacaggccctggcagtgagagaaaggagtcaagtcattcttgtagccagacacttcagggaagttcaggaaatgctctcaagtcttgtaaaggtgatctatcagccacttgcaatctcaagtcctttaccttcaatgacctcaaaaatgcgactaggaattttcgagctgatagtcttctcggtgagggaggatttggatatgtcttcaaaggatggctagatgaaaatacacttgctccctgcaaatcaggaactgggatggtagtggctgtcaagaaacttaagtcagaaagctgccagggccacagagaatggcttgcagaggttaactacttagggcagcttcaccacaaaaatcttgtgacgttgattggatattgcgtagaatctgataaccggcttctagtatacgagtttatgaccaaaggaagcttggaaaatcatctattcagaaaaggagttcagcttatgacttggggtaaacggatgcgtactgcagttgatgttgcacgagggttatcctttttacatagtctggatgctaatgtgatctaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="33368" stop="36296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33665" g_stop="33831" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33832" i_stop="35013" i_length="1182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35014" g_stop="35339" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="484" r_length="326" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35340" i_stop="35431" i_length="92">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35432" g_stop="35567" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="620" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35568" i_stop="35892" i_length="325">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35893" g_stop="35996" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="724" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E561781" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33665" e_stop="33831"/>
          <exon e_start="35014" e_stop="35339"/>
          <exon e_start="35432" e_stop="35567"/>
          <exon e_start="35893" e_stop="35996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTATTATACTTCTACT-ACCTCCTCTTTCTGTTCTACCCTTTCTTGATTTTTTTTATTTTTATTTTTCATCAAGAAATCTTGATTTTTTTCTTTTGTTTATTATGGGGATTTGCTTTGGTAAACCTGTTAAGCTTGCTCATGCCTCTTCTAGTTTGATGTCTGGTATGAATTCCCTCATTCTCTTTTCACTTTTTTTTTTTAAATGTGTTTTTGTATCCAAGATTCTATTCGTATGTTATGTTTAGCTTGATTTTATACTTATTTAGAGTATGTATGACCTATAGGTTATGTGTTCGATAACCAACTAATGGTTATTTTAGGATAGACTGTCTGCGTCACGCTAACCCAGGATGAACTAGGACAAATGAGAAGAATTACATGTGGTTTTTGTTTTCGTTGGGATTTGAATTTAAGATCTCAGGGCTCTTAACCACTCTAGGTCACACACCCTTGGATGCAATTCCATCATCTTTTAGATGTCTGAATTTTTTAGTTGGCTTAAAAGAAAATTATCAATGTGGTTTGTTTGTTTAAAACTTTGTGCTATCCAATCATTTGAATAATTTTTTTTTCACCAATTGAACATCATGTTAAGATATATGAGGAATAATGTCAATTAAATATAGGGGAAAGGATTAATCATGAAACAAGATACAGAAATATAGAACTTGAGATTGTGAAGAGGAGGGTGTGTGGGGGTGGGGGGAATCTGTTCTTGGTTAGTTTGTTGTTGTTGAAGTATACTCGTTGTCTGTCGTAAATTAATCTCACGATTTTACTTACTGAATCTCTTTGAGAGCGATTACTTCTTCCGTTTCAATTTGTTTGTGTTACTTTCTTTTTTAGTAAATTTCAGAAAGCATGCCTTTTTCCCTTTTTGACGACTCTTTAATTACAAATTTCAACATGACATGTTTGAACCACAAGATTAGAAGACATTTTGGTAGATTTTGCATATCATTAGTTTAAAAGCACAAAATTCAAAAATCTTGTTTACTTTCTTTAACTCTGTGTTAAGTCAAAACCAGACGAACACATTGAAACAAAGGAAGCATATGTTATGGCAAAGAAATTGTTAAGTAATATAGTTCCTTTACGCTCTTTAAAGTCATCTTGCGCTTTGGTGTTTTACGATTGCTTGTCCTGAATCATACTGACCATTGTTTAGCTGCTTATTTTCAACTGACCTGATCTATCAAATAGAAGCACTGACATGTATAAGTTTCATAACATTGTATAAGCATATACGTCTCAGGACATGACTTTTTCGTCTTCTGTATTTTCATATTTTGCAATATGAGTCCTGTTTCCTATCTGCTTACTTATTCGCGCTGACTATTTCAGATTCTAGAACAGGCCCCGGCAGTGAGAGAAAGGAGTCAAGTCATTCTTGTAGACAGACACTTCAGGGAAGTTCAGGAAATGCTCTCAAGTCTTGTAAAGGTGATCTATCAGCCACTTGTAATCTCAAGTCCTTTACCTTCAATGACCTCAAAAATGCAACTAGGAATTTTCGAGCTGATAGTCTTCTCGGTGAGGGAGGATTTGGATATGTCTTCAAAGGATGGCTAGATGAAAATACACTTGCTCCCTGCAAATCTGGAACTGGGATGGTAGTGGCTGTCAAGAAACTTAAGTCAGAAAGCTGCCAGGGCCACAGAGAATGGCTTGTATGTTCATTATAATCCTTTGGAAAATGTTTAAAATATATCTTTATCACACTAGTTCTAAGTAATAACTTTGTCCCTCATCAAACCTGCAGGCAGAGGTTAACTACTTAGGGCAGCTTCACCACGAAAATCTTGTGACGTTGATTGGATATTGTGTAGAATCTGATAACCGGCTTCTAGTATACGAGTTTATGACCAAAGGAAGCTTGGAAAATCATCTATTCAGAAGTGAGTCAATCTCTTCATTTGCAGAATCCCTATAATTCTTCATTGTTCCTGTCACCTAGGTAGGATTCTGTAGACTTTATTAGTGTAGTGGTGCAGGACATTTTTCTCAAGCATCGGTAATCTAATAATCCAGAATTTCTGGTGTTAGCTTTCAGTAAGATAATTGTTAATGCAATTGAATGATCTTTTTCTCAGCATTTCTTCTCGTCGATTATAATTCTATTGTTTCTTGTGGAAAATAGCATGTTGCCTTTGAAATTAGTGCATGATATTGTTTTTCAGAAAGTTGCTGATCAGGACTAATGATGCTTCAATTGTTGTGCAGAAGGAGTTCAGCTTATGACTTGGGGTAAACGGATGCGTATTGCAGTTGATGTTGCACGAGGGTTATCCTTTTTACATAGTCTGGATGCTAATGTGATCTACCGG</genome_strand>
        <mrna_strand>CTTTATTATTCTACTACCCCTTTTCTCCTCCTTCTGTTCTACCTTTTCTTGA--TTTT-T-T-TT-ATTTTTCAACAAGAA-TCTTGA--TTTTTC-TTTGTTTAATATGGGGATTTGCTTTGGTAAACCTGTTAAGCTTGCTCATGCCTCTTCTAGTTTGATGTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTAGAACAGGCCCTGGCAGTGAGAGAAAGGAGTCAAGTCATTCTTGTAGCCAGACACTTCAGGGAAGTTCAGGAAATGCTCTCAAGTCTTGTAAAGGTGATCTATCAGCCACTTGCAATCTCAAGTCCTTTACCTTCAATGACCTCAAAAATGCGACTAGGAATTTTCGAGCTGATAGTCTTCTCGGTGAGGGAGGATTTGGATATGTCTTCAAAGGATGGCTAGATGAAAATACACTTGCTCCCTGCAAATCAGGAACTGGGATGGTAGTGGCTGTCAAGAAACTTAAGTCAGAAAGCTGCCAGGGCCACAGAGAATGGCTT............................................................................................GCAGAGGTTAACTACTTAGGGCAGCTTCACCACAAAAATCTTGTGACGTTGATTGGATATTGCGTAGAATCTGATAACCGGCTTCTAGTATACGAGTTTATGACCAAAGGAAGCTTGGAAAATCATCTATTCAGAA.....................................................................................................................................................................................................................................................................................................................................AAGGAGTTCAGCTTATGACTTGGGGTAAACGGATGCGTACTGCAGTTGATGTTGCACGAGGGTTATCCTTTTTACATAGTCTGGATGCTAATGTGATCTACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538071" ref_strand="+" ref_description="SGN-E538071 [TUS-56-P24]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgagggttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgagacaaccattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="39328" stop="38170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39028" g_stop="38454" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E538071" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39028" e_stop="38454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATAATTGCAGACTTAAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTT-AATAATTTCCTTAAGATTGTTTCCAATCTGTGTTATG-AAATCAGAAATTACTGGTTCTAATAAATCATTCAGAAACACAAAGTAACTGAGATTTAATAAAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTTAATCTGTAAAAACGTACCAGAATCTGGAATACTCTTATTGAAAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATTTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGTGAATCAATCCACAACAAGAAAGTACACGAAGAAATATATG-TTTTTAAGAAGAAGGAAGATCAGAAAAAATAAGTAGGAAATATTCTGAAGACTGAATGGTATTTATAAGCAAGAAGAATATATTCTGAAAGGTTGAGAATATATTCTGAAAGGTTGCAACCCTTTC</genome_strand>
        <mrna_strand>ATTATAATTGCAGACTT-AAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTT-TTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGT-AAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGGTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAG-AAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCT-TTCAGAATTGAGACAACCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268499" ref_strand="+" ref_description="SGN-E268499 [cLEI-13-K15]">
      <seq>ttataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="39326" stop="38319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39027" g_stop="38619" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E268499" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39027" e_stop="38619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAATTGCAGACTTAAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTT-AATAATTTCCTTAAGATTGTTTCCAATCTGTGTTATG-AAATCAGAAATTACTGGTTCTAATAAATCATTCAGAAACACAAAGTAACTGAGATTTAATAAAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTTAATCTGTAAAAACGTACCAGAATCTGGAATACTCTTATTGAAAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATTTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGTG</genome_strand>
        <mrna_strand>TTATAATTGCAGACTT-AAAGGAGTATAAAATCACTAAGATTTTTGTCTCCACCAAAAATACAGATTTAAATAATTTCCTTAAGATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTT-TTAGAACCACTAAATAAGATGAACATAAATTTATTTGT-AAAAATAATTTAATCTGT-AAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="39178" stop="40172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39478" g_stop="39872" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39478" e_stop="39872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATTGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAATGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="39182" stop="40144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39482" g_stop="39844" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39482" e_stop="39844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATTGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="46978" stop="45751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46678" g_stop="46051" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46678" e_stop="46051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCATAAAGATCTTTTAGAAGTTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCATTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGGCATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACAGTGAAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTTTTCTATTCCAATGAATCCAAATCAGAACTTATTGGTTACGCAGATGCAGGGTATTTATCAGATCCATATAAAGCTCGATCACAAACAGGTTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="46920" stop="45776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46628" g_stop="46076" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46628" e_stop="46076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGATCTTTTAGAAGTTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCATTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGGCATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACAGTGAAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTTTTCTATTCCAATGAATCCAAATCAGAACTTATTGGTTACGCAGATGCAGGGTATTTATCAGAT-CCATATAAAGCTCGATCACAAACAGGTTATTTGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="47018" stop="45781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46718" g_stop="46081" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46718" e_stop="46081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAACGGTCGGGGTCTGAATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCATAAAGATCTTTTAGAAGTTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCATTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGGCATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACAGTGAAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTTTTCTATTCCAATGAATCCAAATCAGAACTTATTGGTTACGCAGATGCAGGGTATTTATCAGATCCATATAAAGCTCGATCACAAACAGGTTATTTGTTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="46978" stop="45803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46678" g_stop="46103" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46678" e_stop="46103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCATAAAGATCTTTTAGAAGTTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCATTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGGCATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACAGTGAAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTTTTCTATTCCAATGAATCCAAATCAGAACTTATTGGTTACGCAGATGCAGGGTATTTATCAGATCCATATAAAGCTCGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="47593" stop="46284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47293" g_stop="46584" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47293" e_stop="46584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAAACAGAGAAACGATTGGCCAAAATAGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGAGTTTTTGTACGAAAAAGAAATGAGAAAAGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAACGTGTTTCTCAAAGACCTGACATTGATTATATGGAGACATATTCTCCAGTGGTAGATACAATCACCTTCAGATATCTCATAAATCTGGCTGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAACCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTT-TTAAAGAAAGGGTACAAAAATGATCCGATTTGTCCCTGCATTTTCATTAAACGGTCGGGGTCTGAATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCATAAAGATCTTTTAGAAGTTGTTGAGTGTCTGAAAAAAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="48987" stop="47909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48687" g_stop="48209" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48687" e_stop="48209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATATAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATA-TGAGGGATCGGAGTGTCACGTACCGACACAAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTCGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTG-TTATTTGTGGAGTGCAGCAAACGTGCCGTCGTCCTCAACTCGACAGTAATTCTAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGATAACGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATG-TTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="48062" stop="48998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48362" g_stop="48698" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48362" e_stop="48698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCGACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTATATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="48988" stop="48153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48688" g_stop="48451" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48688" e_stop="48451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATATAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATA-TGAGGGATCGGAGTGTCACGTACCGACACAAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354383" ref_strand="+" ref_description="SGN-E354383 [cTOS-17-A14]">
      <seq>agattcgatggagaaagtgaagtctattcaagaaaagcttctagcggcgcaaagtagacaaaaagaatatgcagatcgaaaggttagagacttagagttcatggagggcgaacaagtcttgttgaaagtctcgccaatgaaaggggtgatgcggtttcgtaaaagaggtaagttaagtccaaggtatattggaccatttgaggtactaaagcgagtaggggaggtggcttatgaattagccttacctccagggctgtccggagtacatccggtatttcatgtatccatgttgaaaagataccatggagatggaaactacatcatccgttgggattcagtttcgcttggtgagaattggacttatgaggaggaaccagttgctattttagatagagaggttcgcaagttgaggtcgagagaaattgcatccatcaaagttcaatggaagaatcgaccggttgaagaagctacttgggagaaggaggcagatatgcaagaaaaatacccacatctgtttacagattcaggtactccttttcgccattgtttttcttcatttgatcgttcggggacgaacgatgggtaaattggtatctattgtaacgacctgtttagtcgttttgagcagcagattttaattctggaaaaactggccaagaccacgggcactgcgacggaccgtcacaggcacgacggcccgtcgaaggtgcatcgtttcagcatacttagaatttctgaatttggatatgaaaatcgactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="50564" stop="49309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50265" g_stop="49503" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E354383" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50265" e_stop="49503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCGATGGAAAAAGTGAGGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAAGGTGAACAAGTCTTGTTGAAAGTTTCACCCATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTGGGGGAGGTGGCTTATGAGTTAGACTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCGGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAGATACCCACATCTGTTTAAAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTATTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTAATGTAACGACCCGTTTAGTCGTTTTGAGCAGCAGACTTTATTTCTGGAAAAACTGGCAGAAGCGACGGACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGG-GTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGATACTAAAAATCGACTCTCT</genome_strand>
        <mrna_strand>AGATTCGATGGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGCGAACAAGTCTTGTTGAAAGTCTCGCCAATGAAAGGGGTGATGCGGTTTCGTAAAAGAGGTAAGTTAAGTCCAAGGTATATTGGACCATTTGAGGTACTAAAGCGAGTAGGGGAGGTGGCTTATGAATTAGCCTTACCTCCAGGGCTGTCCGGAGTACATCCGGTATTTCATGTATCCATGTTGAAAAGATACCATGGAGATGGAAACTACATCATCCGTTGGGATTCAGTTTCGCTTGGTGAGAATTGGACTTATGAGGAGGAACCAGTTGCTATTTTAGATAGAGAGGTTCGCAAGTTGAGGTCGAGAGAAATTGCATCCATCAAAGTTCAATGGAAGAATCGACCGGTTGAAGAAGCTACTTGGGAGAAGGAGGCAGATATGCAAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCATTGTTTTTCTTCATTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTAATTCTGGAAAAACTGGCCAAGACCACGGGCACTGCGACGGACCGTCACAGGCACGACGGCCCGTCGAAGGTGCATCGTTTCAGCATACTTAGAATTTCTGAATTTGGATA-TGAAAATCGACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="50026" stop="50803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50326" g_stop="50502" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50326" e_stop="50502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="51507" stop="52818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51807" g_stop="52519" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51807" e_stop="52519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATATCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCAGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGA</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="51507" stop="52702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51807" g_stop="52402" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51807" e_stop="52402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATATCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCAGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="51507" stop="52632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51807" g_stop="52332" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51807" e_stop="52332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATATCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="51578" stop="52856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51878" g_stop="52557" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51878" e_stop="52557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATATCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCAGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="51578" stop="52536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51878" g_stop="52236" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51878" e_stop="52236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATATCTCATTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="54122" stop="52115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53822" g_stop="53650" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53649" i_stop="52906" i_length="744">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.084" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52905" g_stop="52379" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53822" e_stop="53650"/>
          <exon e_start="52905" e_stop="52379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCAACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAAGGTTCGGGAAATTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCTCCTCAGACCGGTCAACACTTCTCCGAGGGGCATATGACCGACTCCAAAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAGAAATTGTCCCAGACCAAGTTACAGACCCCTAATAACTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTTTTCTGGAGGGCGTGGTGGTCGAGGTAATAGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCAGTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGGTATGCCTATCCGTGTCTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGGAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGACGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCTTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCCTTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGACGACACTACCCAAGTGCCTTCGA-TGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCTCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="52096" stop="53456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52396" g_stop="53156" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52396" e_stop="53156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTC-ATCGAAGGCACTTGGGTAGTGTCGTCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAAGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTCCAACTACCACAGACTCACCCACCGGAGTAGAGACACGGATAGGCATACCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="52096" stop="53355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52396" g_stop="53055" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52396" e_stop="53055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTC-ATCGAAGGCACTTGGGTAGTGTCGTCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAAGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTCCAACTACCACAGACTCACCCACCGGAGTAGAGACACGGATAGGCATACCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="52705" stop="53863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53005" g_stop="53563" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53005" e_stop="53563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGGATAGGCATACCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACACTGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGTTATTAGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGGTCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGAGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAATTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="52709" stop="54072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53009" g_stop="53772" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53009" e_stop="53772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATAGGCATACCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACACTGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGTTATTAGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGGTCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGAGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAATTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTTGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGA-GGACTGAAACAGAGTTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="52789" stop="54178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53089" g_stop="53878" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53089" e_stop="53878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACACTGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGTTATTAGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGGTCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGAGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAATTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTTGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="52791" stop="53924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53091" g_stop="53624" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53091" e_stop="53624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACACTGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGTTATTAGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGGTCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGAGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAATTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTTGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="52865" stop="54162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53165" g_stop="53862" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53165" e_stop="53862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACACTGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGTTATTAGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGGTCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGAGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAATTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTTGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="53426" stop="54745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53726" g_stop="54445" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53726" e_stop="54445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAACTCGTGACAGTCAACCAGAAAATCATAGGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTAAAATCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="53429" stop="54692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53729" g_stop="54392" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53729" e_stop="54392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAACTCGTGACAGTCAACCAGAAAATCATAGGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTAAAATCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="53784" stop="54817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54084" g_stop="54516" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54084" e_stop="54516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTAAAATCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGTTCGTCCTCTCCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTCACCGTTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="55109" stop="54223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54809" g_stop="54523" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54809" e_stop="54523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGATCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTCTCCTTGAGAGGCTATAAGACTTTAGGAAAAATTTCACTCTTTCATTCTCTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTGGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACGGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGG-AAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206250" ref_strand="+" ref_description="SGN-E206250 [cLEC-29-L2]">
      <seq>acgaatttgctacttgcatagaaatctccaattgtcagttggattcaagatgagtaatggagatgtatacctttttcatagtgctactacacatacaatattaaaagaaaagaaaagaaatacttttctaatttggttatgaaaatgacatatgtcaacacaatatcaggtagtacaaaattaattgagagctctggaagagcgaccttattacaacctggagagacaatattggacatttgtaatgcattataccgtagtaagtcacaaagaaacttattaagtttcagagtaattcgccaaaatggctatcacgttgagacgactaatgaaggaaaggatgaatgcctttacattactacaattaatgtacagaagaaaattgtgcatgaaaaattacgtgcattttcttctaggttctactatacaagtgtaagtacagttgaatcacatgtcgtagtaaacaaaaggtttactaattttaatgattctattatttggtatgaccggttgggccatcccggatttaatatgatgcacagaatcattgagaattcacgtgggcacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="58128" stop="56979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57824" g_stop="57279" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="572" r_length="551" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E206250" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57824" e_stop="57279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGACGTATGCCTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAG--AA-ATAT--TTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAAAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAAAAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACTGGTTGGGCCATCTCGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGGCACACCTT</genome_strand>
        <mrna_strand>AAATCTCCAATTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATACCTTTTTCATAGTGCTACTACACATACAATATTAAAAGAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGACATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAGCTCTGGAAGAGCGACCTTATTACAACCTGGAGAGACAATATTGGACATTTGTAATGCATTATACCGTAGTAAGTCACAAAGAAACTTATTAAGTTTCAGAGTAATTCGCCAAAATGGCTATCACGTTGAGACGACTAATGAAGGAAAGGATGAATGCCTTTACATTACTACAATTAATGTACAGAAGAAAATTGTGCATGAAAAATTACGTGCATTTTCTTCTAGGTTCTACTATACAAGTGTAAGTACAGTTGAATCACATGTCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTCTATTATTTGGTATGACCGGTTGGGCCATCCCGGATTTAATATGATGCACAGAATCATTGAGAATTCACGTGGGCACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="58027" stop="57046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57714" g_stop="57346" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57714" e_stop="57346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAAAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAAAAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689229" ref_strand="+" ref_description="SGN-E689229 [t3_tus_80_K13]">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="59430" stop="58058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59122" g_stop="58359" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E689229" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59122" e_stop="58359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGTTATCAGCACGAGATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTACTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTAAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCCGACGGTGAAAGATCCACTTGAATTGTGGACTGATTTAAACGGGAGATATGACCACCTAAAGGCAACAATGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACACGTTGGAAAAGACACTTACTACTTTTCATGCCTTGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTCAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATATGGTGGAATCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGATATAATAATGCACGGGGACGTGGAAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615234" ref_strand="-" ref_description="SGN-E615234 [65030]">
      <seq>atgttcacaaaaagaactacaaggtggtgatgtatttcaagtatgcatttcaattgacatgtagattcctaataaagtaaattaattggcattctactcttttacttcagatgagacttgaaaatgttaaagctggaagaaaagggaaccttaatgttgccactgaggtatttcaagttgccccttctcttcatatggttgaagtgcggaaggcaaaaggagatactttggaattccacaagttttacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagataggtagtattactaccatgaactgcaattgcataagcttttgctggtgctataatctgtgtaaaaaaactttgcaacttctttctttccctttttttttgctatttgttctgttctttgtagtgggacttttttctcccatgagctaatggccaactgtttcatttcatcatggagtaggacttttgatcctatttgatttgcagtttgtataactggtatacacttttgagaaatgtatacaacttttcagctccctcaagaaaaaaaaacatccactaaggagaattatccttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="67481" stop="65448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67181" g_stop="67014" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="242" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66095" g_stop="65742" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="587" r_length="345" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="604" polyA_stop="615"/>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E615234" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615234" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67181" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
          <exon e_start="66095" e_stop="65742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCACAAAAAGAACTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGGCATGTAGATTCCTAATAAAGTTAAATTAATTCGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGT-AAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAATATCATAATCCT</genome_strand>
        <mrna_strand>ATGTTCACAAAAAGAACTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGACATGTAGATTCCTAATAAAGT-AAATTAATTGGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTTAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG.................................................................................................................................................GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTGCGGAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGATAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTGCTATAATCTGTGTAAAAAAACTTTGCAACTTCTTTCTTTC---CCTTTTTTTTTGCTATTTGTTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTTCATTTCATCATGGAGTAGGACTTTTGATCC----T-ATTTGATTTGCAGTTTGTATAACTGGTATACACTTTTGAGAAATGTATACAACTTTTCAGCTCCCTCAAGAAAAAAA-AACAT-CCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607031" ref_strand="+" ref_description="SGN-E607031 [22988]">
      <seq>ctacaagatgagacttgaaaatgttaaagctggaagaaaagggaaacttaatgttgccactgaggtatttcaagttggcccttctcttcatatggttgaagtgcggaaggcaaaaggagatactttggaattccacaagttttacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagataggtagtattactaccatgaactgcaattgcataagcttttgctggtgctataatctgtgtaaaaaaactttgcaacttctttctttcccttttttttgctatttgttctgttctttgtagtgggacttttttctcccatgagctaatggccaactgtttcatttcatcatggagtnagacttttgttcctatttgatttgcagtttgtataactggtatacacttttgagaaatgtatacaacttttcagctccctcaagaaaaaaaaacatccactaaggagaattatcctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="67376" stop="65448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67165" g_stop="67159" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67070" g_stop="67014" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="64" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="139" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66095" g_stop="65742" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="483" r_length="344" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="510"/>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E607031" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67165" e_stop="67159"/>
          <exon e_start="67070" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
          <exon e_start="66095" e_stop="65742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGGCATGTAGATTCCTAATAAAGTTAAATTAATTCGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGT-AAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAATATCATAATCCT</genome_strand>
        <mrna_strand>CTACAAG........................................................................................ATGAGACTTGAAAATGTTAAAGCTGGAAGAAAAGGGAAACTTAATGTTGCCACTGAG.................................................................................................................................................GTATTTCAAGTTGGCCCTTCTCTTCATATGGTTGAAGTGCGGAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGATAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTGCTATAATCTGTGTAAAAAAACTTTGCAAC----TTCTTTCTTTCCCTTTTTTTTGCTATTTGTTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTTCATTTCATCATGGAGTNAGACTTTTGTTCC----T-ATTTGATTTGCAGTTTGTATAACTGGTATACACTTTTGAGAAATGTATACAACTTTTCAGCTCCCTCAAGAAAAAAA-AACAT-CCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607125" ref_strand="+" ref_description="SGN-E607125 [23084]">
      <seq>ctacaagatgagacttgaaaatgttaaagctggaagaaaagggaaccttaatgttggcactgaggtatttcaagttgccccttctcttcatatggttgaagtgcggaaggcaaaaggagatactttggaattccacaagttttacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagataggtagtattactaccatgaactgcaattgcataagcttttgctggtgctataatctgtgtaaaaaaactttgcaacttctttctttcccttttttttgctatttgttctgttctttgtagtgggacttttttctcccatgagctaatggccaactgtttcatttcatcatggagtaggacttttgttcctatttgatttgcagtttgtataactggtatacacttttgagaaatgtatacaacttttcagctccctcaagaaaaaaaaacatccactaaggagaattatcctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="67376" stop="65448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67165" g_stop="67159" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67070" g_stop="67014" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="64" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="139" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66095" g_stop="65742" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="483" r_length="344" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="510"/>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E607125" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67165" e_stop="67159"/>
          <exon e_start="67070" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
          <exon e_start="66095" e_stop="65742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGGCATGTAGATTCCTAATAAAGTTAAATTAATTCGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGT-AAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAATATCATAATCCT</genome_strand>
        <mrna_strand>CTACAAG........................................................................................ATGAGACTTGAAAATGTTAAAGCTGGAAGAAAAGGGAACCTTAATGTTGGCACTGAG.................................................................................................................................................GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTGCGGAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGATAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTGCTATAATCTGTGTAAAAAAACTTTGCAAC----TTCTTTCTTTCCCTTTTTTTTGCTATTTGTTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTTCATTTCATCATGGAGTAGGACTTTTGTTCC----T-ATTTGATTTGCAGTTTGTATAACTGGTATACACTTTTGAGAAATGTATACAACTTTTCAGCTCCCTCAAGAAAAAAA-AACAT-CCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606937" ref_strand="+" ref_description="SGN-E606937 [22892]">
      <seq>ctacaagatgagacttgaaaatgttaaagctggaagaaaagggaaccttaatgttgccactgaggtatttcaagttgccccttctcttcatatggttgaagtgcggaaggcaaaaggagatactttggaattccacaagttttacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagataggtagtattactaccatgaactgcaattgcataagcttttgctggtgctataatctgtgtaaaaaaactttgcaacttctttctttcccttttttttgctatttgttctgttctttgtagtgggacttttttctcccatgagctaatggccaactgtttcatttcatcatggagtaggacttttgttcctatttgatttgcagtttgtataactggtatacacttttgagaaatgtatacaacttttcagctccctcaagaaaaaaaaacatccactaaggagaattatcctttaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="67376" stop="65448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67165" g_stop="67159" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67070" g_stop="67014" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="64" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="139" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66095" g_stop="65742" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="483" r_length="344" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E606937" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67165" e_stop="67159"/>
          <exon e_start="67070" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
          <exon e_start="66095" e_stop="65742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGGCATGTAGATTCCTAATAAAGTTAAATTAATTCGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGT-AAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAATATCATAATCCT</genome_strand>
        <mrna_strand>CTACAAG........................................................................................ATGAGACTTGAAAATGTTAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG.................................................................................................................................................GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTGCGGAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGATAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTGCTATAATCTGTGTAAAAAAACTTTGCAAC----TTCTTTCTTTCCCTTTTTTTTGCTATTTGTTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTTCATTTCATCATGGAGTAGGACTTTTGTTCC----T-ATTTGATTTGCAGTTTGTATAACTGGTATACACTTTTGAGAAATGTATACAACTTTTCAGCTCCCTCAAGAAAAAAA-AACAT-CCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546010" ref_strand="+" ref_description="SGN-E546010 [TUS-69-C12](-)">
      <seq>actcaaaaaacttggtctcttttcccgaatggccatttatcccanccaacaattcaaatcaatataaattggtattccaccttgtcggagacattgatgatttgtgtattgctataatattacttcattcacagatgttttgattccgacattcacaggaatttaagagagaaacaaggttcacatctaaatgctcggccaatgaaattatcagtaagattgaagaagctgcaaagcccctcggttttgatgttcacaaaaagaactacaagatgagacttgaaaatgtcaaagctggaagaaaagggaaccttaatgttgccactgaggtatttcaagttgccccttctcttcatatggttgaagtgcgaaaggcaaaaggagatactttggaattccacaagttctacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagctaggtagtattactaccatgaactgcaattgcataagcttttgctggtcccacaatctgtgtaaaaaactttgcaacttgtttctttctttccctttttttgtcatttggtctgttctttgtagtgggacttttttctcccatgagctaatggccaactgttctatttcatcatggagtaggacttttgttcctatttgatttgatttgcagtttgtataacaaatatacacttttgagaaatgtatacaactcttcagccccctcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="67729" stop="65452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67429" g_stop="67159" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67070" g_stop="67014" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="329" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="404" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66095" g_stop="65749" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="750" r_length="346" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E546010" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67429" e_stop="67159"/>
          <exon e_start="67070" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
          <exon e_start="66095" e_stop="65749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAAAAAACTTGGTCTCTTTTCCCGAATGGCCATTTTTCCCA-CCAACAATTCAAATCAATATAAATTGGTATTCCACCTTGTCGGAGAAATTGATGATTTGTGTATTGCTATAATATTACTTCATTCACAGATGTTTTGATTCCGACATTCACAGGAATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGGCATGTAGATTCCTAATAAAGTTAAATTAATTCGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAATATCA</genome_strand>
        <mrna_strand>ACTCAAAAAACTTGGTCTCTTTTCCCGAATGGCCATTTATCCCANCCAACAATTCAAATCAATATAAATTGGTATTCCACCTTGTCGGAGACATTGATGATTTGTGTATTGCTATAATATTACTTCATTCACAGATGTTTTGATTCCGACATTCACAGGAATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAG........................................................................................ATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG.................................................................................................................................................GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTGCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCC-TTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350355" ref_strand="+" ref_description="SGN-E350355 [cTOS-5-E24]">
      <seq>cggttttgatgttcacaaaaagaactacaagatgagacttgaaaatgtcaaagctggaagaaaagggaaccttaatgttgccactgaggtatttcaagttgccccttctcttcatatggttgaagtccgaaaggcaaaaggagatactttggaattccacaagttctacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagctaggtagtattactaccatgaactgcaattgcataagcttttgctggtcccacaatctgtgtaaaaaactttgcaacttgtttctttctttcccttttttttgtcatttggtctgttctttgtagtgggacttttttctcccatgagctaatggccaactgttctatttcatcatggagtaggacttttgttcctatttgatttgatttgcagtttgtataacaaatatacacttttgagaaatgtatacaactcttcagccccctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="67489" stop="65454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67189" g_stop="67159" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67070" g_stop="67014" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="88" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="163" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66095" g_stop="65754" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="505" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E350355" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67189" e_stop="67159"/>
          <exon e_start="67070" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
          <exon e_start="66095" e_stop="65754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTTTGATGTTCACAAAAAGAACTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGGCATGTAGATTCCTAATAAAGTTAAATTAATTCGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAA</genome_strand>
        <mrna_strand>CGGTTTTGATGTTCACAAAAAGAACTACAAG........................................................................................ATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG.................................................................................................................................................GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354779" ref_strand="+" ref_description="SGN-E354779 [cTOS-19-M5]">
      <seq>cggttttgatgttcacaaaaagaactacaagatgagacttgaaaatgtcaaagctggaagaaaagggaaccttaatgttgccactgaggtatttcaagttgccccttctcttcatatggttgaagtccgaaaggcaaaaggagatactttggaattccacaagttctacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagctaggtagtattactaccatgaactgcaattgcataagcttttgctggtcccacaatctgtgtaaaaaactttgcaacttgtttctttctttcccttttttttgtcatttggtctgttctttgtagtgggacttttttctcccatgagctaatggccaactgttctatttcatcatggagtaggacttttgttcctatttgatttgatttgcagtttgtataacaaatatacacttttgagaaatgtatacaactcttcagccccctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="67489" stop="65454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67189" g_stop="67159" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67070" g_stop="67014" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="88" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="163" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66095" g_stop="65754" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="505" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E354779" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67189" e_stop="67159"/>
          <exon e_start="67070" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
          <exon e_start="66095" e_stop="65754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTTTGATGTTCACAAAAAGAACTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGGCATGTAGATTCCTAATAAAGTTAAATTAATTCGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAA</genome_strand>
        <mrna_strand>CGGTTTTGATGTTCACAAAAAGAACTACAAG........................................................................................ATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG.................................................................................................................................................GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279118" ref_strand="+" ref_description="SGN-E279118 [cLEL-4-B5](-)">
      <seq>tatttcaagttgccccttctcttcatatggttgaagtccgaaaggcaaaaggagatactttggaattccacaagttctacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagctaggtagtattactaccatgaactgcaattgcataagcttttgctggtcccacaatctgtgtaaaaaactttgcaacttgtttctttctttcccttttttttgtcatttggtctgttctttgtagtgggacttttttctcccatgagctaatggccaactgttctatttcatcatggagtaggacttttgttcctatttgatttgatttgcagtttgtataacaaatatacacttttgagaaatgtatacaactcttcagccccctcaagaaaaaaaaaaaaaaaaaaaactcgagactagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="67167" stop="65446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66867" g_stop="66794" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66095" g_stop="65755" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="415" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="430"/>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E279118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66867" e_stop="66794"/>
          <exon e_start="66095" e_stop="65755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAA</genome_strand>
        <mrna_strand>TATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578425" ref_strand="-" ref_description="SGN-E578425 [LE12DH01]">
      <seq>tggatgatgttgaagctgtcttcaaggattctgaagaacatcatgtaccagagaaaaaggaagagcagccaactcccatgaatgcattcgagttgatttcaatgtcaaaaggactcaaccttgggaatctcttcgatgaacaggaatttaagagagaaacaaggttcacatctaaatgctcggccaatgaaattatcagtaagattgaagaagctgcaaagcccctcggttttgatgttcacaaaaagaactacaagatgagacttgaaaatgtcaaagctggaagaaaagggaaccttaatgttgccactgaggtatttcaagttgccccttctcttcatatggttgaagtccgaaaggcaaaaggagatactttggaattccacaagttctacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagctaggtagtattactaccatgaactgcaattgcataagcttttgctggtcccacaatctgtgtaaaaaactttgcaacttgtttctttctttcccccttttttgtcatttggtctgttctttgtagtgggacttttttctcccatgagctaatggccaactgttctatttcatcatggagtaggacttttgttcctatttgatttgatttgcagtttgtataacaaatatacacttttgagaaatgtatacaactcttcagccccctcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="68637" stop="65460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68337" g_stop="68303" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68302" i_stop="68196" i_length="107">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68195" g_stop="68088" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="143" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68087" i_stop="67273" i_length="815">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67272" g_stop="67159" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="257" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67070" g_stop="67014" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="314" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="389" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66095" g_stop="65760" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="725" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E578425" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578425" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68337" e_stop="68303"/>
          <exon e_start="68195" e_stop="68088"/>
          <exon e_start="67272" e_stop="67159"/>
          <exon e_start="67070" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
          <exon e_start="66095" e_stop="65760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGATGTTGAAGCTGTCTTCAAGGATTCTGAAGTGAGCACACTGAAATGTTGAACAAGTTTTTCATTGAATTCAGAGGAAAGAATTGATTGTTGTATAGTCATCCTCATGTGGTTCTCTTTTCCTTGACACAACAACAGGAACATCATGTAACAGAGAAAAAGGAAGAGCAGCCAACTCCCATGAATGCATTCGAGTTGATTTCAATGTCAAAAGGACTCAACCTTGGGAATCTCTTCGATGAACAGGTTACCGACTATGAACTTCGATTTTTATTTGTTACTTATGTTGCATGTTTTGGAACTTTTGTTTGATTTTGCATGGTTTTTGTGCCATGAATTACATCAGTGTATAGTTGTACTTCTCAGTAGGATATGCTATAATGAAGTTTCATGTGAATGTCAAAGACTTAATGCTTACTTGGTAACCATTGAATAATTCTTTGTTCATTCCCAAACACTCTAAATAACAATGGGAAAGAAGTAAAGATTCTATGATGTGTAGTAAAACTAGTACCTTCGCATTTACATAAAATAATAGACGTCTTCTAACAGACATGAGCCTAAATGCCCTGAGTTGAGCTAACCTGCTAAATTCATCAAGTTTAGCTGTTAAATAAGCGCTAGATGCTTCAAAATGCTGCGGCAATATTGCATGCATACACAAACTAACTTCCATCTCTTTCTCCTGTGTGTTGAATTCCGTTATCCATTTTACAGAAGGCTTTTAGATTATTATTCAGAATTCTCAGTTTTTGATTTGCAGCTAAGTAATCTCATATGAGTGAGGATGCAAATCCACTAATTAAAAAATGAAAAAACTGTTAAAGGACTAATTACAGAAAAATGAATTCCTAAGTTCATTTTACTCCCTGTCTGAATAAAACTGACCTTTCTTTATTACTCTACTCAAAAAACTTGGTCTCTTTTCCCGAATGGCCATTTTTCCCACCAACAATTCAAATCAATATAAATTGGTATTCCACCTTGTCGGAGAAATTGATGATTTGTGTATTGCTATAATATTACTTCATTCACAGATGTTTTGATTCCGACATTCACAGGAATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGGCATGTAGATTCCTAATAAAGTTAAATTAATTCGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGA</genome_strand>
        <mrna_strand>TGGATGATGTTGAAGCTGTCTTCAAGGATTCTGAA...........................................................................................................GAACATCATGTACCAGAGAAAAAGGAAGAGCAGCCAACTCCCATGAATGCATTCGAGTTGATTTCAATGTCAAAAGGACTCAACCTTGGGAATCTCTTCGATGAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAG........................................................................................ATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG.................................................................................................................................................GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCCCTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294719" ref_strand="-" ref_description="SGN-E294719 [cLET-17-G13](-)">
      <seq>aaaagggaaccttaatgttgccactgaggtatttcaagttgccccttctcttcatatggttgaagtccgaaaggcaaaaggagatactttggaattccacaagttctacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagctaggtagtattactaccatgaactgcaattgcataagcttttgctggtcccacaatctgtgtaaaaaactttgcaacttgtttctttctttcccttttttttgtcatttggtctgttctttgtagagggacttttttctcccatgagctaatggccaactgttctatttcatcatggagtaggacttttgttcctatttgatttgatttgcagtttgtataacaaatatacacttttgagaaatgtatacaactcttcagccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="67341" stop="65466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67041" g_stop="67014" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="103" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66095" g_stop="65766" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="433" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E294719" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294719" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67041" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
          <exon e_start="66095" e_stop="65766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCC</genome_strand>
        <mrna_strand>AAAAGGGAACCTTAATGTTGCCACTGAG.................................................................................................................................................GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGAGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294718" ref_strand="+" ref_description="SGN-E294718 [cLET-17-G13]">
      <seq>aaaagggaaccttaatgttgccactgaggtatttcaagttgccccttctcttcatatggttgaagtccgaaaggcaaaaggagatactttggaattccacaagttctacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagctaggtagtattactaccatgaactgcaattgcataagcttttgctggtcccacaatctgtgtaaaaaactttgcaacttgtttctttctttcccttttttttgtcatttggtctgttctttgtagagggacttttttctcccatgagctaatggccaactgttctatttcatcatggagtaggacttttgttcctatttgatttgatttgcagtttgtataacaaatatacacttttgagaaatgtatacaactcttcagccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="67341" stop="65466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67041" g_stop="67014" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="103" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66095" g_stop="65766" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="433" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E294718" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67041" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
          <exon e_start="66095" e_stop="65766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCC</genome_strand>
        <mrna_strand>AAAAGGGAACCTTAATGTTGCCACTGAG.................................................................................................................................................GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGAGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237738" ref_strand="+" ref_description="SGN-E237738 [cLED-19-H6]">
      <seq>ttaagagagaaacaaggttcacatctaaatgctcggccaatgaaattatcagtaagattgaagaagctgcaaagcccctcggttttgatgttcacaaaaagaactacaagatgagacttgaaaatgtcaaagctggaagaaaagggaaccttaatgttgccactgaggtatttcaagttgccccttctcttcatatggttgaagtccgaaaggcaaaaggagatactttggaattccacaagttctacaagaatctttcgactagtctagaggatgtagtgtggaaaactgaagaggacatgcaagctaggtagtattactaccatgaactgcaattgcataagcttttgctggtcccacaatctgtgtaaaaaactttgcaacttgtttctttctttcccttttttttgtcatttggtctgttctttgtagtgggacttttttcttccatgagctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="67568" stop="65579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67268" g_stop="67159" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67070" g_stop="67014" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="167" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="242" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66095" g_stop="65879" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="459" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E237738" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67268" e_stop="67159"/>
          <exon e_start="67070" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
          <exon e_start="66095" e_stop="65879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGGCATGTAGATTCCTAATAAAGTTAAATTAATTCGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAGGTACCATATTCCGCTAACTGCCGAAAAAGTTATCTAAATGACGATGCTGAAATGTGTAGATCACCATTAGTAGGTTTTCGTAGGCCAATACAAGCTAATTGCTCGTGAATGAGCAACATAGTCTTGAAGTTACTGTTCGACACAAGATAGCAACAAAAAAGTAAGAGGTTGTAGGCATGTTTTTAGATTAGGTGAGAGAAGTTATAGCGTCTCTTTGAAATGACCATAACATTGTTATTCATTGTCCCTCAAAACATGGATGGTTTGATCTTAGTTACAGGGTCCACTTTAGAGCCTTAGAACGGTGATATCATCTTGTAACCTCTTATGTCACAATGGACAACATGATTTTTGTATTGCTGTAATAGGAATTAAAACCCGTGTGCCTCGTATTAGAGAGACGACTCACCATGAGTCTTGGACAACTCCAGATAAAAGAAGAGTACAGAAAATATAAAGAAGCCAAGAACCATGGGAAAGTGAGAGAGGATGGAAGAAACTAATGGATGTTTAGCCTAATAAAGATCACACTAGTGTCTGTATACCTGTTTTCTACTTTATAGTTTCCAATAAGGCATAGGTTTTTGCTTTGTTTTGTCTATCGGAAATGCAAGCACCTCGTTGATTTTTAGATCCTACTAGTTCGAGCTAATTGTTCGATCTCATGCTAATCATTTTGTTGCTCATTCTTGATGCAGTTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAAT</genome_strand>
        <mrna_strand>TTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAG........................................................................................ATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG.................................................................................................................................................GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTTCCATGAGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572503" ref_strand="+" ref_description="SGN-E572503 [31668]">
      <seq>cggatctgtggtcgtgcggagtcatactctttgtattgcttgcaggttacttgccttttgatgactccaatcttatgaacctgtataaaaaaatctctgttgctgaatttacatgtcctccttggatgtcttttggtgctatgaagttaattactcgcatcttggatccgaaccctatgacacgtatcaccatcccagaaattctggaggacgagtggttcaagaaagattataaatctcccatttttaatgagaaaggagatgccaacctggatgatgttgaagctgtcttcaaggattctgaagaacatcatgtaacagagaaaaaggaagagcagcaactcccatgaatgcattcgagttgatttcaatgtccaaaggactcaaccttgggaatctcttcgatgaacaggggatttaagagagaaacaaggttcacatctaaatgctccgcaatgaaattatcagtaagattgaagaagctgcaaagcccctcggtttttgatgttcacaaaaagaaactaccaatgagacttcgccatgttaaagctgggaagaaaagggaagcttaatgttgcactgaggtatttcaagttngccttctcttcatatgggtttgaagtgcggaaggcaaaaggagatacctttgggaattccacaagtttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="69091" stop="66490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68791" g_stop="68700" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.882" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68615" g_stop="68526" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="182" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68525" i_stop="68426" i_length="100">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68425" g_stop="68303" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="305" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68302" i_stop="68196" i_length="107">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68195" g_stop="68088" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="412" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68087" i_stop="67273" i_length="815">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67272" g_stop="67159" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="527" r_length="115" r_score="0.904"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88">
            <donor d_prob="0.978" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67070" g_stop="67014" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="584" r_length="57" r_score="0.842"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.998" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66868" g_stop="66794" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="662" r_length="78" r_score="0.827"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E572503" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68791" e_stop="68700"/>
          <exon e_start="68615" e_stop="68526"/>
          <exon e_start="68425" e_stop="68303"/>
          <exon e_start="68195" e_stop="68088"/>
          <exon e_start="67272" e_stop="67159"/>
          <exon e_start="67070" e_stop="67014"/>
          <exon e_start="66868" e_stop="66794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAAGTGAGCATTCTTCCAAATTCATTATGGAATCAATCTGCTTTTGTTTTCCCTATTATTTTCACGATGTCATCACGGTCTTTGTAGATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACAGTAAGCATACTGGATTTCTGAATACAATTGCGGGATTTTAGCTTGCAACTAAATCAACATCTTTTCTCTTATTTTATTATTGCACGTGTCTCCTATGCAGCGTATCACCATCTCAGAAATTCTGGAGGATGAGTGGTTCAAGAAAGATTATAAATCTCCCATTTTTAATGAGAAAGGAGATGCCAACCTGGATGATGTTGAAGCTGTCTTCAAGGATTCTGAAGTGAGCACACTGAAATGTTGAACAAGTTTTTCATTGAATTCAGAGGAAAGAATTGATTGTTGTATAGTCATCCTCATGTGGTTCTCTTTTCCTTGACACAACAACAGGAACATCATGTAACAGAGAAAAAGGAAGAGCAGCCAACTCCCATGAATGCATTCGAGTTGATTTCAATGTCAAAAGGACTCAACCTTGGGAATCTCTTCGATGAACAGGTTACCGACTATGAACTTCGATTTTTATTTGTTACTTATGTTGCATGTTTTGGAACTTTTGTTTGATTTTGCATGGTTTTTGTGCCATGAATTACATCAGTGTATAGTTGTACTTCTCAGTAGGATATGCTATAATGAAGTTTCATGTGAATGTCAAAGACTTAATGCTTACTTGGTAACCATTGAATAATTCTTTGTTCATTCCCAAACACTCTAAATAACAATGGGAAAGAAGTAAAGATTCTATGATGTGTAGTAAAACTAGTACCTTCGCATTTACATAAAATAATAGACGTCTTCTAACAGACATGAGCCTAAATGCCCTGAGTTGAGCTAACCTGCTAAATTCATCAAGTTTAGCTGTTAAATAAGCGCTAGATGCTTCAAAATGCTGCGGCAATATTGCATGCATACACAAACTAACTTCCATCTCTTTCTCCTGTGTGTTGAATTCCGTTATCCATTTTACAGAAGGCTTTTAGATTATTATTCAGAATTCTCAGTTTTTGATTTGCAGCTAAGTAATCTCATATGAGTGAGGATGCAAATCCACTAATTAAAAAATGAAAAAACTGTTAAAGGACTAATTACAGAAAAATGAATTCCTAAGTTCATTTTACTCCCTGTCTGAATAAAACTGACCTTTCTTTATTACTCTACTCAAAAAACTTGGTCTCTTTTCCCGAATGGCCATTTTTCCCACCAACAATTCAAATCAATATAAATTGGTATTCCACCTTGTCGGAGAAATTGATGATTTGTGTATTGCTATAATATTACTTCATTCACAGATGTTTTGATTCCGACATTCACAG-GAATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGG-TTTTGATGTTCACAAAAAG-AACTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGGCATGTAGATTCCTAATAAAGTTAAATTAATTCGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTCAAAGCT-GGAAGAAAAGGGAACCTTAATGTTGCCACTGAGGTATGCTCAATGTGCATAGCTAGTCATCTACAATTATCTTATTTTACTTTAACCTTTTGCAGTTTGTGTTGAGGATAGCCATAAGTTCTTTGGAATTTGAATCTTTAATCATCATAGCCTGAACACTGTTTGGTCTTGAATGTAGGTATTTCAAGTTGCCCCTTCTCTTCATAT-GG-TTGAAGTCCGAAAGGCAAAAGGAGATA-CTTT-GGAATTCCACAAG</genome_strand>
        <mrna_strand>CGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATGAACCTGTATAAAAAA....................................................................................ATCTCTGTTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACA....................................................................................................CGTATCACCATCCCAGAAATTCTGGAGGACGAGTGGTTCAAGAAAGATTATAAATCTCCCATTTTTAATGAGAAAGGAGATGCCAACCTGGATGATGTTGAAGCTGTCTTCAAGGATTCTGAA...........................................................................................................GAACATCATGTAACAGAGAAAAAGGAAGAGCAG-CAACTCCCATGAATGCATTCGAGTTGATTTCAATGTCCAAAGGACTCAACCTTGGGAATCTCTTCGATGAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCCG-CAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTTGATGTTCACAAAAAGAAACTACCA-........................................................................................ATGAGACTTCGCCATGTTAAAGCTGGGAAGAAAAGGGAAGCTTAATGTTG-CACTGAG.................................................................................................................................................GTATTTCAAGTT-NGCCTTCTCTTCATATGGGTTTGAAGTGCGGAAGGCAAAAGGAGATACCTTTGGGAATTCCACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265067" ref_strand="+" ref_description="SGN-E265067 [cLEI-2-D11]">
      <seq>taccatagagatttaaagcctgagaatttactcttggatgtcaatggaaaccggaaggtttctgattttggattgagtgctctgtcccagcaagtcagggatgatggcttactccacaccacatgtggaactcccaactatgttgctcctgaggtactcaacgatcatggatatgatggtacaaccgcggatctgtggtcgtgcggagtcatactctttgtattgcttgcaggttacttgccttttgatgactccaatcttattaacctgtataaaaaaatctctgctgctgaatttacatgtcctccttggatgtcttttggtgctatgaagttaattactcgcatcttggatccgaaccctatgacacgtatcaccatctcagaaattctggaggatgagtggttcaagaaagattataaatctcccatttttaatgagaaaggagatgccaacctggatgatgttgaagctgtcttcaaggattctgaagaacatcatgtaacagagaaaaaggaagagcagccaactcccatgaatgcattcgagttgatttcaatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="70113" stop="67825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69931" g_stop="69914" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69804" g_stop="69724" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="99" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69014" g_stop="68961" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="153" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68825" g_stop="68700" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="279" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68615" g_stop="68526" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="369" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68525" i_stop="68426" i_length="100">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68425" g_stop="68303" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="492" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68302" i_stop="68196" i_length="107">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68195" g_stop="68125" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="563" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E265067" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69931" e_stop="69914"/>
          <exon e_start="69804" e_stop="69724"/>
          <exon e_start="69014" e_stop="68961"/>
          <exon e_start="68825" e_stop="68700"/>
          <exon e_start="68615" e_stop="68526"/>
          <exon e_start="68425" e_stop="68303"/>
          <exon e_start="68195" e_stop="68125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGGGTAACTGTCGATTATCCATTCTCAAACTCTTAATATATGTCTCCAATCTTTGATATGACTTTTGCTTTGTGGCTGTCAAAATTAATGCAGTGAATCTTCCATTGTGTAACCTACTAGTAGATTGTGCATCAATATCTTAAGTCTTAACATCTTTATGATTGCCTTGAGTACATTTTCTTGTTTGAGAAATGCGGTACATAACTCCGCCCCCTCCCCCTAGCTGAAGCCACAGATCTCCATGGAAAGCGCCATATCAGAGACAAACTACTGAGAGGAGTTTCTAAAAACGCAAATCGAGTAATTGTCACTAGAGAAAGAAGCCAGCATAATTTTTACTGAAATCCGTTTGTGCTTATTCCTTCTGTTAACTAGTTTAAACATCATTTGGAATTGATTCAATCTTATTATTAGAATATTCAGATTCAACTGAATATATTGTTTTCGAGTTTGGTTAACTTTGTGAAGCAACTGTGCGTGGAGCTTGGGACAATGTCATTAAATTTGTGATCGACTGCTGACTAGTTATTTGCTTTGAACTGATCCGAAAATTATTGGACAATGACTTCCTTTTTCCGTTTTAGCTAGAGAACTCATGCTAGTTTCAAACAGCAGTAGTCCTGCAAGATATTTCTCTCACTTAGGTTATAGACTTATAGTTGACATTCTTTTCGGAATCAGATATATTTCTTACTCTAGTGAAATTTTCCAGGATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAGGTATGATGAATTTCGTTTCAACAACTTGTTCTTTTTGTTCATTTCTCACAAAGAAAAAATAAGGTCTCCCTGTCATGTGCACTCTTCTTATCTTATTTTTCTCTTGGTTTAACAAATGAGATTCATTTCTTTTAGGTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAAGTGAGCATTCTTCCAAATTCATTATGGAATCAATCTGCTTTTGTTTTCCCTATTATTTTCACGATGTCATCACGGTCTTTGTAGATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACAGTAAGCATACTGGATTTCTGAATACAATTGCGGGATTTTAGCTTGCAACTAAATCAACATCTTTTCTCTTATTTTATTATTGCACGTGTCTCCTATGCAGCGTATCACCATCTCAGAAATTCTGGAGGATGAGTGGTTCAAGAAAGATTATAAATCTCCCATTTTTAATGAGAAAGGAGATGCCAACCTGGATGATGTTGAAGCTGTCTTCAAGGATTCTGAAGTGAGCACACTGAAATGTTGAACAAGTTTTTCATTGAATTCAGAGGAAAGAATTGATTGTTGTATAGTCATCCTCATGTGGTTCTCTTTTCCTTGACACAACAACAGGAACATCATGTAACAGAGAAAAAGGAAGAGCAGCCAACTCCCATGAATGCATTCGAGTTGATTTCAATGTC</genome_strand>
        <mrna_strand>TACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTCTTGGATGTCAATGGAAACCGGAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG.......................................................................................................................................GTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAA....................................................................................ATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACA....................................................................................................CGTATCACCATCTCAGAAATTCTGGAGGATGAGTGGTTCAAGAAAGATTATAAATCTCCCATTTTTAATGAGAAAGGAGATGCCAACCTGGATGATGTTGAAGCTGTCTTCAAGGATTCTGAA...........................................................................................................GAACATCATGTAACAGAGAAAAAGGAAGAGCAGCCAACTCCCATGAATGCATTCGAGTTGATTTCAATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211266" ref_strand="+" ref_description="SGN-E211266 [cLEC-70-C14]">
      <seq>cgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggcggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatactttcagcagcttattaatgctgttgattattgtcatagcaggggagtctaccatagagatttaaagcctgagaatttactcttggatgtcaatggaaacctcaaggtttctgattttggattgagtgctctgtcccagcaagtcagggatgatggcttactccacaccacatgtggaactcccaactatgttgctcctgaggtactcaacgatcatggatatgatggtacaaccgcggatctgtggtcgtgcggagtcatactctttgtattgcttgcaggttacttgccttttgatgactccaatcttattaacctgtataaaaaaatctctgctgctgaatttacatgtcctccttggatgtcttttggtgctatgaagttaattactcgcatcttggatccgaaccctatgacacgtatcaccatctcagaaattctggaggatgagtggttcaagaaagattataaatctcccatttttaatgagaaaggagatgccaacctggatgatgntgaagctgtcttcaaggattctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="70622" stop="68004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="88" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="196" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69804" g_stop="69724" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="277" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69014" g_stop="68961" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="331" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68825" g_stop="68700" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="457" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68615" g_stop="68526" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="547" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68525" i_stop="68426" i_length="100">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68425" g_stop="68304" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="669" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E211266" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69724"/>
          <exon e_start="69014" e_stop="68961"/>
          <exon e_start="68825" e_stop="68700"/>
          <exon e_start="68615" e_stop="68526"/>
          <exon e_start="68425" e_stop="68304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGGGTAACTGTCGATTATCCATTCTCAAACTCTTAATATATGTCTCCAATCTTTGATATGACTTTTGCTTTGTGGCTGTCAAAATTAATGCAGTGAATCTTCCATTGTGTAACCTACTAGTAGATTGTGCATCAATATCTTAAGTCTTAACATCTTTATGATTGCCTTGAGTACATTTTCTTGTTTGAGAAATGCGGTACATAACTCCGCCCCCTCCCCCTAGCTGAAGCCACAGATCTCCATGGAAAGCGCCATATCAGAGACAAACTACTGAGAGGAGTTTCTAAAAACGCAAATCGAGTAATTGTCACTAGAGAAAGAAGCCAGCATAATTTTTACTGAAATCCGTTTGTGCTTATTCCTTCTGTTAACTAGTTTAAACATCATTTGGAATTGATTCAATCTTATTATTAGAATATTCAGATTCAACTGAATATATTGTTTTCGAGTTTGGTTAACTTTGTGAAGCAACTGTGCGTGGAGCTTGGGACAATGTCATTAAATTTGTGATCGACTGCTGACTAGTTATTTGCTTTGAACTGATCCGAAAATTATTGGACAATGACTTCCTTTTTCCGTTTTAGCTAGAGAACTCATGCTAGTTTCAAACAGCAGTAGTCCTGCAAGATATTTCTCTCACTTAGGTTATAGACTTATAGTTGACATTCTTTTCGGAATCAGATATATTTCTTACTCTAGTGAAATTTTCCAGGATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAGGTATGATGAATTTCGTTTCAACAACTTGTTCTTTTTGTTCATTTCTCACAAAGAAAAAATAAGGTCTCCCTGTCATGTGCACTCTTCTTATCTTATTTTTCTCTTGGTTTAACAAATGAGATTCATTTCTTTTAGGTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAAGTGAGCATTCTTCCAAATTCATTATGGAATCAATCTGCTTTTGTTTTCCCTATTATTTTCACGATGTCATCACGGTCTTTGTAGATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACAGTAAGCATACTGGATTTCTGAATACAATTGCGGGATTTTAGCTTGCAACTAAATCAACATCTTTTCTCTTATTTTATTATTGCACGTGTCTCCTATGCAGCGTATCACCATCTCAGAAATTCTGGAGGATGAGTGGTTCAAGAAAGATTATAAATCTCCCATTTTTAATGAGAAAGGAGATGCCAACCTGGATGATGTTGAAGCTGTCTTCAAGGATTCTGA</genome_strand>
        <mrna_strand>GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG.......................................................................................................................................GTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAA....................................................................................ATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACA....................................................................................................CGTATCACCATCTCAGAAATTCTGGAGGATGAGTGGTTCAAGAAAGATTATAAATCTCCCATTTTTAATGAGAAAGGAGATGCCAACCTGGATGATGNTGAAGCTGTCTTCAAGGATTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482104" ref_strand="+" ref_description="SGN-E482104 [cSTD-20-N8]">
      <seq>gctaaagttaaatttgcgaggaattcggagacaggagaacctgtagcgatcaaaattcttgataaggataaggtgcttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaatcaggcatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggtggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatattttcagcagcttattaatgctgttgattactgtcatagcaggggagtctaccatagagatttaaagcctgagaatttactgttggatgcctcaggaaacctcaaggtttctgattttggattgagtgctctgtcccagcaagtcagggatgatggcttactccacaccacatgtggaactcccaactatgttgctcctgaggtactcaatgatcatggatatgatggtacaaccgcggatctgtggtcgtgcggagtcatactctttgtattgcttgcaggttacttgccttttgatgactccaatcttatgaacctgtataaaaaaatctctgctgctgaatttacatgtcctccttggatgtcttttggtgctatgaaagtaattactcgcatcttggatccgaancctatgacacgtatcaccatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="72248" stop="68223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71948" g_stop="71850" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="162" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="234" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="342" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69804" g_stop="69724" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="423" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69014" g_stop="68961" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="477" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68825" g_stop="68700" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="603" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84">
            <donor d_prob="0.859" d_score="0.98"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68615" g_stop="68526" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="693" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="68525" i_stop="68426" i_length="100">
            <donor d_prob="0.802" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68425" g_stop="68413" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="706" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E482104" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71948" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69724"/>
          <exon e_start="69014" e_stop="68961"/>
          <exon e_start="68825" e_stop="68700"/>
          <exon e_start="68615" e_stop="68526"/>
          <exon e_start="68425" e_stop="68413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGGGTAACTGTCGATTATCCATTCTCAAACTCTTAATATATGTCTCCAATCTTTGATATGACTTTTGCTTTGTGGCTGTCAAAATTAATGCAGTGAATCTTCCATTGTGTAACCTACTAGTAGATTGTGCATCAATATCTTAAGTCTTAACATCTTTATGATTGCCTTGAGTACATTTTCTTGTTTGAGAAATGCGGTACATAACTCCGCCCCCTCCCCCTAGCTGAAGCCACAGATCTCCATGGAAAGCGCCATATCAGAGACAAACTACTGAGAGGAGTTTCTAAAAACGCAAATCGAGTAATTGTCACTAGAGAAAGAAGCCAGCATAATTTTTACTGAAATCCGTTTGTGCTTATTCCTTCTGTTAACTAGTTTAAACATCATTTGGAATTGATTCAATCTTATTATTAGAATATTCAGATTCAACTGAATATATTGTTTTCGAGTTTGGTTAACTTTGTGAAGCAACTGTGCGTGGAGCTTGGGACAATGTCATTAAATTTGTGATCGACTGCTGACTAGTTATTTGCTTTGAACTGATCCGAAAATTATTGGACAATGACTTCCTTTTTCCGTTTTAGCTAGAGAACTCATGCTAGTTTCAAACAGCAGTAGTCCTGCAAGATATTTCTCTCACTTAGGTTATAGACTTATAGTTGACATTCTTTTCGGAATCAGATATATTTCTTACTCTAGTGAAATTTTCCAGGATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAGGTATGATGAATTTCGTTTCAACAACTTGTTCTTTTTGTTCATTTCTCACAAAGAAAAAATAAGGTCTCCCTGTCATGTGCACTCTTCTTATCTTATTTTTCTCTTGGTTTAACAAATGAGATTCATTTCTTTTAGGTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAAGTGAGCATTCTTCCAAATTCATTATGGAATCAATCTGCTTTTGTTTTCCCTATTATTTTCACGATGTCATCACGGTCTTTGTAGATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACAGTAAGCATACTGGATTTCTGAATACAATTGCGGGATTTTAGCTTGCAACTAAATCAACATCTTTTCTCTTATTTTATTATTGCACGTGTCTCCTATGCAGCGTATCACCATCT</genome_strand>
        <mrna_strand>GCTAAAGTTAAATTTGCGAGGAATTCGGAGACAGGAGAACCTGTAGCGATCAAAATTCTTGATAAGGATAAGGTGCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATCAGGCATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGTGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATATTTTCAGCAGCTTATTAATGCTGTTGATTACTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTGTTGGATGCCTCAGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG.......................................................................................................................................GTACTCAATGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATGAACCTGTATAAAAAA....................................................................................ATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAAGTAATTACTCGCATCTTGGATCCGAANCCTATGACA....................................................................................................CGTATCACCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313788" ref_strand="+" ref_description="SGN-E313788 [cTOA-17-H20]">
      <seq>gagaggagaagctgtagcgatcaagattcgggataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaattagacatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggcggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatactttcagcagcttattaatgctgttgattattgtcatagcaggggagtctaccatagagatttaaagcctgagaatttactcttggatgtcaatggaaacctcaaggtttctgattttggattgagtgctctgtcccagcaagtcagggatgatggcttactccacaccacatgtggaactcccaactatgttgctcctgaggtactcaacgatcatggatatgatggtacaaccgcggatctgtggtcgtgcggagtcatactctttgtattgcttgcaggttacttgccttttgatgactccaatcttattaacctgtataaaaaaatctctgctgctgaatttacatgtcctccttggatgtcttttggtgctatgaagttaattactcgcatcttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="72219" stop="68241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71919" g_stop="71850" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="133" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="205" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="313" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69804" g_stop="69724" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="394" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69014" g_stop="68961" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="448" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68825" g_stop="68700" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="574" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68615" g_stop="68541" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="649" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E313788" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71919" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69724"/>
          <exon e_start="69014" e_stop="68961"/>
          <exon e_start="68825" e_stop="68700"/>
          <exon e_start="68615" e_stop="68541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGGGTAACTGTCGATTATCCATTCTCAAACTCTTAATATATGTCTCCAATCTTTGATATGACTTTTGCTTTGTGGCTGTCAAAATTAATGCAGTGAATCTTCCATTGTGTAACCTACTAGTAGATTGTGCATCAATATCTTAAGTCTTAACATCTTTATGATTGCCTTGAGTACATTTTCTTGTTTGAGAAATGCGGTACATAACTCCGCCCCCTCCCCCTAGCTGAAGCCACAGATCTCCATGGAAAGCGCCATATCAGAGACAAACTACTGAGAGGAGTTTCTAAAAACGCAAATCGAGTAATTGTCACTAGAGAAAGAAGCCAGCATAATTTTTACTGAAATCCGTTTGTGCTTATTCCTTCTGTTAACTAGTTTAAACATCATTTGGAATTGATTCAATCTTATTATTAGAATATTCAGATTCAACTGAATATATTGTTTTCGAGTTTGGTTAACTTTGTGAAGCAACTGTGCGTGGAGCTTGGGACAATGTCATTAAATTTGTGATCGACTGCTGACTAGTTATTTGCTTTGAACTGATCCGAAAATTATTGGACAATGACTTCCTTTTTCCGTTTTAGCTAGAGAACTCATGCTAGTTTCAAACAGCAGTAGTCCTGCAAGATATTTCTCTCACTTAGGTTATAGACTTATAGTTGACATTCTTTTCGGAATCAGATATATTTCTTACTCTAGTGAAATTTTCCAGGATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAGGTATGATGAATTTCGTTTCAACAACTTGTTCTTTTTGTTCATTTCTCACAAAGAAAAAATAAGGTCTCCCTGTCATGTGCACTCTTCTTATCTTATTTTTCTCTTGGTTTAACAAATGAGATTCATTTCTTTTAGGTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAAGTGAGCATTCTTCCAAATTCATTATGGAATCAATCTGCTTTTGTTTTCCCTATTATTTTCACGATGTCATCACGGTCTTTGTAGATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGAT</genome_strand>
        <mrna_strand>GAGAGGAGAAGCTGTAGCGATCAAGATTCGGGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG.......................................................................................................................................GTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAA....................................................................................ATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343194" ref_strand="+" ref_description="SGN-E343194 [cTOF-17-N21]">
      <seq>tttaaaggactgtgcaagtatctcagttatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaagtttgcgaggaattcggagacaggagaagctgtagcgatcaagattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaattagacatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggcggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatactttcagcagcttattaatgctgttgattattgtcatagcaggggagtctaccatagagatttaaagcctgagaatttactcttggatgtcaatggaaacctcaaggtttctgattttggattgagtgctctgtcccagcaagtcagggatgatggcttactccacaccacatgtggaactcccaactatgttgctcctgaggtactcaacgatcatggatatgatggtacaaccgcggatctgtnggtcgtgcggagtcatactctntgtattgcttgcaggttacttgccttttgatgactccaatcttattaacctgtataaaaaaatctctgctgctgaatttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="72348" stop="68293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72048" g_stop="71850" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="262" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="334" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="442" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69804" g_stop="69724" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="523" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69014" g_stop="68961" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="577" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68825" g_stop="68700" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="704" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68615" g_stop="68593" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="727" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E343194" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72048" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69724"/>
          <exon e_start="69014" e_stop="68961"/>
          <exon e_start="68825" e_stop="68700"/>
          <exon e_start="68615" e_stop="68593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGGGTAACTGTCGATTATCCATTCTCAAACTCTTAATATATGTCTCCAATCTTTGATATGACTTTTGCTTTGTGGCTGTCAAAATTAATGCAGTGAATCTTCCATTGTGTAACCTACTAGTAGATTGTGCATCAATATCTTAAGTCTTAACATCTTTATGATTGCCTTGAGTACATTTTCTTGTTTGAGAAATGCGGTACATAACTCCGCCCCCTCCCCCTAGCTGAAGCCACAGATCTCCATGGAAAGCGCCATATCAGAGACAAACTACTGAGAGGAGTTTCTAAAAACGCAAATCGAGTAATTGTCACTAGAGAAAGAAGCCAGCATAATTTTTACTGAAATCCGTTTGTGCTTATTCCTTCTGTTAACTAGTTTAAACATCATTTGGAATTGATTCAATCTTATTATTAGAATATTCAGATTCAACTGAATATATTGTTTTCGAGTTTGGTTAACTTTGTGAAGCAACTGTGCGTGGAGCTTGGGACAATGTCATTAAATTTGTGATCGACTGCTGACTAGTTATTTGCTTTGAACTGATCCGAAAATTATTGGACAATGACTTCCTTTTTCCGTTTTAGCTAGAGAACTCATGCTAGTTTCAAACAGCAGTAGTCCTGCAAGATATTTCTCTCACTTAGGTTATAGACTTATAGTTGACATTCTTTTCGGAATCAGATATATTTCTTACTCTAGTGAAATTTTCCAGGATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAGGTATGATGAATTTCGTTTCAACAACTTGTTCTTTTTGTTCATTTCTCACAAAGAAAAAATAAGGTCTCCCTGTCATGTGCACTCTTCTTATCTTATTTTTCTCTTGGTTTAACAAATGAGATTCATTTCTTTTAGGTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGT-GGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAAGTGAGCATTCTTCCAAATTCATTATGGAATCAATCTGCTTTTGTTTTCCCTATTATTTTCACGATGTCATCACGGTCTTTGTAGATCTCTGCTGCTGAATTTACATG</genome_strand>
        <mrna_strand>TTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG.......................................................................................................................................GTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTNGGTCGTGCGGAGTCATACTCTNTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAA....................................................................................ATCTCTGCTGCTGAATTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623308" ref_strand="+" ref_description="SGN-E623308 [88399]">
      <seq>ttcatctttatctttatcttggccaacatcccatttcaaaatttcagctcaaataaaagttctttaagaaggattacgcctgcactttttaaaggactgtgcaagtatctcagtaatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaaatttgcgaggaattcggagacaggagaacctgtagcaatcaaaattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaatcaggcatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggtggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatattttcagcagcttattaatgctgttgattactgtcatagcaggggagtctaccatagagatttaaagcctgagaatttactgttggatgcctcaggaaacctcaaggtttctgattttggattgagtgctctgtcccagcaagtcagggatgatggcttactccacaccacatgtggaactcccaactatgttgctcctgaggtactcaatgatcatggatatgatggtacaaccgcggatctgtggtcgtgcggagtcatactctttgtattgccttgcaggtttacttgcctttttgatgactccaatcttatgaacctgttataaaaaaatctctgttgcttgaatttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73711" stop="68398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73411" g_stop="73359" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="286" r_length="233" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="349" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="421" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="529" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69804" g_stop="69724" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="610" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69014" g_stop="68961" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="664" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68825" g_stop="68700" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="794" r_length="130" r_score="0.921"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84">
            <donor d_prob="0.859" d_score="0.85"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68615" g_stop="68595" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="816" r_length="22" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E623308" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73411" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69724"/>
          <exon e_start="69014" e_stop="68961"/>
          <exon e_start="68825" e_stop="68700"/>
          <exon e_start="68615" e_stop="68595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGGGTAACTGTCGATTATCCATTCTCAAACTCTTAATATATGTCTCCAATCTTTGATATGACTTTTGCTTTGTGGCTGTCAAAATTAATGCAGTGAATCTTCCATTGTGTAACCTACTAGTAGATTGTGCATCAATATCTTAAGTCTTAACATCTTTATGATTGCCTTGAGTACATTTTCTTGTTTGAGAAATGCGGTACATAACTCCGCCCCCTCCCCCTAGCTGAAGCCACAGATCTCCATGGAAAGCGCCATATCAGAGACAAACTACTGAGAGGAGTTTCTAAAAACGCAAATCGAGTAATTGTCACTAGAGAAAGAAGCCAGCATAATTTTTACTGAAATCCGTTTGTGCTTATTCCTTCTGTTAACTAGTTTAAACATCATTTGGAATTGATTCAATCTTATTATTAGAATATTCAGATTCAACTGAATATATTGTTTTCGAGTTTGGTTAACTTTGTGAAGCAACTGTGCGTGGAGCTTGGGACAATGTCATTAAATTTGTGATCGACTGCTGACTAGTTATTTGCTTTGAACTGATCCGAAAATTATTGGACAATGACTTCCTTTTTCCGTTTTAGCTAGAGAACTCATGCTAGTTTCAAACAGCAGTAGTCCTGCAAGATATTTCTCTCACTTAGGTTATAGACTTATAGTTGACATTCTTTTCGGAATCAGATATATTTCTTACTCTAGTGAAATTTTCCAGGATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAGGTATGATGAATTTCGTTTCAACAACTTGTTCTTTTTGTTCATTTCTCACAAAGAAAAAATAAGGTCTCCCTGTCATGTGCACTCTTCTTATCTTATTTTTCTCTTGGTTTAACAAATGAGATTCATTTCTTTTAGGTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTG-CTTGCAGG-TTACTTGCC-TTTTGATGACTCCAATCTTATTAACCTG-TATAAAAAAGTGAGCATTCTTCCAAATTCATTATGGAATCAATCTGCTTTTGTTTTCCCTATTATTTTCACGATGTCATCACGGTCTTTGTAGATCTCTGCTGC-TGAATTTACA</genome_strand>
        <mrna_strand>TTCATCTTTATCTTTATCTTGGCCAACATCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAA-GTTCTTTAAGAAGGATTACGCCTGCACTTTTTAAAGGACTGTGCAAGTATCTCAGTAATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAATTTGCGAGGAATTCGGAGACAGGAGAACCTGTAGCAATCAAAATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATCAGGCATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGTGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATATTTTCAGCAGCTTATTAATGCTGTTGATTACTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTGTTGGATGCCTCAGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG.......................................................................................................................................GTACTCAATGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCCTTGCAGGTTTACTTGCCTTTTTGATGACTCCAATCTTATGAACCTGTTATAAAAAA....................................................................................ATCTCTGTTGCTTGAATTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334757" ref_strand="+" ref_description="SGN-E334757 [cTOE-3-G24]">
      <seq>tctttaaaggacctgtgcaagtacctcagttatgaaccaggcaaaaatcaagccgcagagttggtaaatacgaaatgggaaggacaattggtgagggaacatttgctaaagttaagtttgcgaggaattcggagacaggagaagctgtagcgatcaagattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaattagacatccacatgtcgttcagttatccgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggcggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatactttcagcagcttattaatgctgttgattattgtcatagccaggggagtctaccatagagatttaaagcctgagaatttactcttggatgtcaatggaaacctcaaggtttctgattttggattgagtgctctgtcccagcaagtcagggatgatggcttactccacaccacatgtggaactcccaactatgttgctcctgaggtactcaacgatcatggatatgatggtacacccgcggatctgtggtcgtgcggagtcatactctttgtattgcttgcaggttacttgccttttgatgactccaatcttattaccctgtataaaaaatctctgctgctgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="72350" stop="68298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72050" g_stop="71850" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="266" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="338" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="447" r_length="109" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69804" g_stop="69724" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="528" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69014" g_stop="68961" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="582" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68825" g_stop="68700" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="707" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84">
            <donor d_prob="0.859" d_score="0.96"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68615" g_stop="68598" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="725" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E334757" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72050" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69724"/>
          <exon e_start="69014" e_stop="68961"/>
          <exon e_start="68825" e_stop="68700"/>
          <exon e_start="68615" e_stop="68598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTAAAGGA-CTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAG-CGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAG-CAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGGGTAACTGTCGATTATCCATTCTCAAACTCTTAATATATGTCTCCAATCTTTGATATGACTTTTGCTTTGTGGCTGTCAAAATTAATGCAGTGAATCTTCCATTGTGTAACCTACTAGTAGATTGTGCATCAATATCTTAAGTCTTAACATCTTTATGATTGCCTTGAGTACATTTTCTTGTTTGAGAAATGCGGTACATAACTCCGCCCCCTCCCCCTAGCTGAAGCCACAGATCTCCATGGAAAGCGCCATATCAGAGACAAACTACTGAGAGGAGTTTCTAAAAACGCAAATCGAGTAATTGTCACTAGAGAAAGAAGCCAGCATAATTTTTACTGAAATCCGTTTGTGCTTATTCCTTCTGTTAACTAGTTTAAACATCATTTGGAATTGATTCAATCTTATTATTAGAATATTCAGATTCAACTGAATATATTGTTTTCGAGTTTGGTTAACTTTGTGAAGCAACTGTGCGTGGAGCTTGGGACAATGTCATTAAATTTGTGATCGACTGCTGACTAGTTATTTGCTTTGAACTGATCCGAAAATTATTGGACAATGACTTCCTTTTTCCGTTTTAGCTAGAGAACTCATGCTAGTTTCAAACAGCAGTAGTCCTGCAAGATATTTCTCTCACTTAGGTTATAGACTTATAGTTGACATTCTTTTCGGAATCAGATATATTTCTTACTCTAGTGAAATTTTCCAGGATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAGGTATGATGAATTTCGTTTCAACAACTTGTTCTTTTTGTTCATTTCTCACAAAGAAAAAATAAGGTCTCCCTGTCATGTGCACTCTTCTTATCTTATTTTTCTCTTGGTTTAACAAATGAGATTCATTTCTTTTAGGTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAAGTGAGCATTCTTCCAAATTCATTATGGAATCAATCTGCTTTTGTTTTCCCTATTATTTTCACGATGTCATCACGGTCTTTGTAGATCTCTGCTGCTGAATTT</genome_strand>
        <mrna_strand>TCTTTAAAGGACCTGTGCAAGTACCTCAGTTATGAACCAGGCAAAAATCAAGCCGCAGAGTTGGTAAATACGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATCCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG.......................................................................................................................................GTACTCAACGATCATGGATATGATGGTACACCCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTACCCTGTAT-AAAAA....................................................................................ATCTCTGCTGCTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623284" ref_strand="+" ref_description="SGN-E623284 [88374]">
      <seq>ttcatctttatctttatcttggccaacatcccatttcaaaatttcagctcaaataaaagttctttaagaaggattacgccctgcactttttaaaaggactgtgcagtatctcagtaatgattcaggcaaaaatcaagcgcagaagtgggtaaatattgaaatggggaaggacaattggtgagggaacatttgctaaagttaaatttgcgaggaattcggagacaggagaacctgtagcaatcaaaattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaatcaggcatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggtggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatattttcagcagcttattaatgctgttgattactgtcatagcaggggagtctaccatagagatttaaagcctgagaatttactgttggatgcctcaggaaacctcaaggtttctgattttggattgagtgctctgtcccagcaagtcagggatgatggcttactccacaccacatgtggaactcccaactatgttgctcctgaggtactcaatgatcatggatatgatggtacaccgcggatctgtggtcgtgcggagtcatactctttgtattgcttgcaggttacttgccttttgatgactccaatcttattgaaaccttgtataaaaaaatctctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73711" stop="68398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73411" g_stop="73359" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="290" r_length="237" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="353" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="425" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="533" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69804" g_stop="69724" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="614" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69014" g_stop="68961" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="668" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68825" g_stop="68700" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="796" r_length="128" r_score="0.937"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84">
            <donor d_prob="0.859" d_score="0.87"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68615" g_stop="68608" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="804" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E623284" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73411" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69724"/>
          <exon e_start="69014" e_stop="68961"/>
          <exon e_start="68825" e_stop="68700"/>
          <exon e_start="68615" e_stop="68608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACG-CCTGCA-TTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAG-AGTTGGTAAATA-TGAAAT-GGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGGGTAACTGTCGATTATCCATTCTCAAACTCTTAATATATGTCTCCAATCTTTGATATGACTTTTGCTTTGTGGCTGTCAAAATTAATGCAGTGAATCTTCCATTGTGTAACCTACTAGTAGATTGTGCATCAATATCTTAAGTCTTAACATCTTTATGATTGCCTTGAGTACATTTTCTTGTTTGAGAAATGCGGTACATAACTCCGCCCCCTCCCCCTAGCTGAAGCCACAGATCTCCATGGAAAGCGCCATATCAGAGACAAACTACTGAGAGGAGTTTCTAAAAACGCAAATCGAGTAATTGTCACTAGAGAAAGAAGCCAGCATAATTTTTACTGAAATCCGTTTGTGCTTATTCCTTCTGTTAACTAGTTTAAACATCATTTGGAATTGATTCAATCTTATTATTAGAATATTCAGATTCAACTGAATATATTGTTTTCGAGTTTGGTTAACTTTGTGAAGCAACTGTGCGTGGAGCTTGGGACAATGTCATTAAATTTGTGATCGACTGCTGACTAGTTATTTGCTTTGAACTGATCCGAAAATTATTGGACAATGACTTCCTTTTTCCGTTTTAGCTAGAGAACTCATGCTAGTTTCAAACAGCAGTAGTCCTGCAAGATATTTCTCTCACTTAGGTTATAGACTTATAGTTGACATTCTTTTCGGAATCAGATATATTTCTTACTCTAGTGAAATTTTCCAGGATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAGGTATGATGAATTTCGTTTCAACAACTTGTTCTTTTTGTTCATTTCTCACAAAGAAAAAATAAGGTCTCCCTGTCATGTGCACTCTTCTTATCTTATTTTTCTCTTGGTTTAACAAATGAGATTCATTTCTTTTAGGTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATT--AACC-TGTATAAAAAAGTGAGCATTCTTCCAAATTCATTATGGAATCAATCTGCTTTTGTTTTCCCTATTATTTTCACGATGTCATCACGGTCTTTGTAGATCTCTGC</genome_strand>
        <mrna_strand>TTCATCTTTATCTTTATCTTGGCCAACATCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAA-GTTCTTTAAGAAGGATTACGCCCTGCACTTTTTAAAAGGACTGTGC-AGTATCTCAGTAATGATTCAGGCAAAAATCAAGCGCAGAAGTGGGTAAATATTGAAATGGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAATTTGCGAGGAATTCGGAGACAGGAGAACCTGTAGCAATCAAAATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATCAGGCATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGTGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATATTTTCAGCAGCTTATTAATGCTGTTGATTACTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTGTTGGATGCCTCAGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG.......................................................................................................................................GTACTCAATGATCATGGATATGATGGTAC-ACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTGAAACCTTGTATAAAAAA....................................................................................ATCTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486075" ref_strand="+" ref_description="SGN-E486075 [cSTE-20-N8]">
      <seq>gctaaagttaaatttgcgaggaattcggagacaggagaacctgtagcgatcaaaattcttgataaggataaggtgcttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaatcaggcatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggtggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatattttcagcagcttattaatgctgttgattactgtcatagcaggggagtctaccatagagatttaaagcctgagaatttactgttggatgcctcaggaaacctcaaggtttctgattttggattgagtgctctgtcccagcaagtcagggatgatggcttactccacaccacatgtggaactcccaactatgttgctcctgaggtactcaatgatcatggatatgatggtacaaccgcggatctgtggtcgtgcggagtcatactctttgtattgcttgcaggttacttgccttttgatgactcccatcttatgaacctgtataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="72248" stop="68400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71948" g_stop="71850" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="162" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="234" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="342" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69804" g_stop="69724" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="423" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69014" g_stop="68961" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="477" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68825" g_stop="68700" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="603" r_length="126" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E486075" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71948" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69724"/>
          <exon e_start="69014" e_stop="68961"/>
          <exon e_start="68825" e_stop="68700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGGGTAACTGTCGATTATCCATTCTCAAACTCTTAATATATGTCTCCAATCTTTGATATGACTTTTGCTTTGTGGCTGTCAAAATTAATGCAGTGAATCTTCCATTGTGTAACCTACTAGTAGATTGTGCATCAATATCTTAAGTCTTAACATCTTTATGATTGCCTTGAGTACATTTTCTTGTTTGAGAAATGCGGTACATAACTCCGCCCCCTCCCCCTAGCTGAAGCCACAGATCTCCATGGAAAGCGCCATATCAGAGACAAACTACTGAGAGGAGTTTCTAAAAACGCAAATCGAGTAATTGTCACTAGAGAAAGAAGCCAGCATAATTTTTACTGAAATCCGTTTGTGCTTATTCCTTCTGTTAACTAGTTTAAACATCATTTGGAATTGATTCAATCTTATTATTAGAATATTCAGATTCAACTGAATATATTGTTTTCGAGTTTGGTTAACTTTGTGAAGCAACTGTGCGTGGAGCTTGGGACAATGTCATTAAATTTGTGATCGACTGCTGACTAGTTATTTGCTTTGAACTGATCCGAAAATTATTGGACAATGACTTCCTTTTTCCGTTTTAGCTAGAGAACTCATGCTAGTTTCAAACAGCAGTAGTCCTGCAAGATATTTCTCTCACTTAGGTTATAGACTTATAGTTGACATTCTTTTCGGAATCAGATATATTTCTTACTCTAGTGAAATTTTCCAGGATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAGGTATGATGAATTTCGTTTCAACAACTTGTTCTTTTTGTTCATTTCTCACAAAGAAAAAATAAGGTCTCCCTGTCATGTGCACTCTTCTTATCTTATTTTTCTCTTGGTTTAACAAATGAGATTCATTTCTTTTAGGTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAA</genome_strand>
        <mrna_strand>GCTAAAGTTAAATTTGCGAGGAATTCGGAGACAGGAGAACCTGTAGCGATCAAAATTCTTGATAAGGATAAGGTGCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATCAGGCATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGTGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATATTTTCAGCAGCTTATTAATGCTGTTGATTACTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTGTTGGATGCCTCAGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG.......................................................................................................................................GTACTCAATGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCCATCTTATGAACCTGTATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602798" ref_strand="+" ref_description="SGN-E602798 [55871]">
      <seq>caagatttggatgttgccttcttttccacttaccatatttttgtccaaatttttgaggatttataagctgctgtaatcaatcttttttgacccccaaacaacaaaggctgcaactttcatactttcttcatctttatctttatcttggccaacatcccatttcaaaatttcagctcaaataaaagttctttaagaaggattacgcctgcactttttaaaggactgtgcaagtatctcagtaatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaaatttgcgaggaattcggagacaggagaacctgtagcaatcaaaattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaatcaggcatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggtggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatattttcagcagcttattaatgctgttgattactgtcatagcaggggagtctaccatagagatttaaagcctgagaatttactgttggatgcctcaggaaacctcaaggtttctgatttcggattgagtgctctgtcccagcaagtcagggatgatggcttactccagaccacatgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73833" stop="68686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73533" g_stop="73359" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="412" r_length="233" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="475" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="547" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="655" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69804" g_stop="69724" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="736" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69014" g_stop="68986" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="765" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E602798" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73533" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69724"/>
          <exon e_start="69014" e_stop="68986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATA----CTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGGGTAACTGTCGATTATCCATTCTCAAACTCTTAATATATGTCTCCAATCTTTGATATGACTTTTGCTTTGTGGCTGTCAAAATTAATGCAGTGAATCTTCCATTGTGTAACCTACTAGTAGATTGTGCATCAATATCTTAAGTCTTAACATCTTTATGATTGCCTTGAGTACATTTTCTTGTTTGAGAAATGCGGTACATAACTCCGCCCCCTCCCCCTAGCTGAAGCCACAGATCTCCATGGAAAGCGCCATATCAGAGACAAACTACTGAGAGGAGTTTCTAAAAACGCAAATCGAGTAATTGTCACTAGAGAAAGAAGCCAGCATAATTTTTACTGAAATCCGTTTGTGCTTATTCCTTCTGTTAACTAGTTTAAACATCATTTGGAATTGATTCAATCTTATTATTAGAATATTCAGATTCAACTGAATATATTGTTTTCGAGTTTGGTTAACTTTGTGAAGCAACTGTGCGTGGAGCTTGGGACAATGTCATTAAATTTGTGATCGACTGCTGACTAGTTATTTGCTTTGAACTGATCCGAAAATTATTGGACAATGACTTCCTTTTTCCGTTTTAGCTAGAGAACTCATGCTAGTTTCAAACAGCAGTAGTCCTGCAAGATATTTCTCTCACTTAGGTTATAGACTTATAGTTGACATTCTTTTCGGAATCAGATATATTTCTTACTCTAGTGAAATTTTCCAGGATGATGGCTTACTCCACACCACATGTGG</genome_strand>
        <mrna_strand>CAAGATTTGGATGTTGCCTTCTTTTCCACTTACCATATTTTTGTCCAAATTTTTGAGGATTTATAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTTCTTCATCTTTATCTTTATCTTGGCCAACATCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAA-GTTCTTTAAGAAGGATTACGCCTGCACTTTTTAAAGGACTGTGCAAGTATCTCAGTAATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAATTTGCGAGGAATTCGGAGACAGGAGAACCTGTAGCAATCAAAATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATCAGGCATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGTGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATATTTTCAGCAGCTTATTAATGCTGTTGATTACTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTGTTGGATGCCTCAGGAAACCTCAAGGTTTCTGATTTCGGATTGAGTGCTCTGTCCCAGCAAGTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGGCTTACTCCAGACCACATGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327687" ref_strand="+" ref_description="SGN-E327687 [cTOC-20-E11]">
      <seq>atttctaagctgctgtaatcaatcttttttgacccccaaacaacaaaggctgcaactttcatacttcatctttatctttatcttggccaacaccccatttcaaaatttcagctcaaataaaaggttctttaagaaggattacgcctgcattctttaaaggactgtgcaagtatctcagttatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaagtttgcgaggaattcggagacaggagaagctgtagcgatcaagattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaattagacatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggcggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatactttcagcagcttattaatgctgttgattattgtcatagcaggggagtctaccatagagatttaaagcctgagaatttactcttggatgtcaatggaaaccctcaggtttctgattttgggatgagtgctctgtcccagcaagtcagggatgatggctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73775" stop="69415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73475" g_stop="73359" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="351" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="414" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="486" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="594" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69804" g_stop="69724" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="675" r_length="81" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E327687" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73475" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG</genome_strand>
        <mrna_strand>ATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTCTTGGATGTCAATGGAAACCCTCAGGTTTCTGATTTTGGGATGAGTGCTCTGTCCCAGCAAGTCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570357" ref_strand="+" ref_description="SGN-E570357 [14930]">
      <seq>tcttcatctttatctttatcttggccaacatcccatttcaaaatttcagctcaaataaaagttctttaagaaggattacgcctgcactttttaaaggactgtgcaagtatctcagtaatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaaatttgcgaggaattcggagacaggagaacctgtagcaatcaaaattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaatcaggcatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggtggagagctctttgacaaaattgtaaactcatggacggatgcatgaaaaagaagcaaggaaatatttccagcaggcttattaatgctgttgattactgtcatagcagggagtctaccataagagatttaaaggctgagaatttactgttggatgcctcaggaaaaccttcaaaggtttctgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73712" stop="69609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73413" g_stop="73359" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="288" r_length="233" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="351" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="423" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="533" r_length="110" r_score="0.907"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.981" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69804" g_stop="69755" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="586" r_length="53" r_score="0.740"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E570357" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73413" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAA-TCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCA-GCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCAT-AGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTC-AATGGAAACC-TC-AAGGTTTCTGATTT</genome_strand>
        <mrna_strand>TCTTCATCTTTATCTTTATCTTGGCCAACATCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAA-GTTCTTTAAGAAGGATTACGCCTGCACTTTTTAAAGGACTGTGCAAGTATCTCAGTAATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAATTTGCGAGGAATTCGGAGACAGGAGAACCTGTAGCAATCAAAATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATCAGGCATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGTGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAACTCATGGACGGATGCATGAAAAAGAAGCAAGGAAATATTTCCAGCAGGCTTATTAATGCTGTTGATTACTGTCATAGCA-GGGAGTCTACCATAAGAGATTTAAAG.............................................................................................................GCTGAGAATTTACTGTTGGATGCCTCAGGAAAACCTTCAAAGGTTTCTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265020" ref_strand="+" ref_description="SGN-E265020 [cLEI-2-G7]">
      <seq>tttttgacccccaaacaacaaaggctgcaactttcatacttcatctttatctttatcttggccaacaccccatttcaaaatttcagctcaaataaaaggttctttaagaaggattacgcctgcattctttaaaggactgtgcaagtatctcagttatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaagtttgcgaggaattcggagacaggagaagctgtagcgatcaagattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaattagacatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggcggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatactttcagcagcttattaatgctgttgattattgtcatagcaggggagtctaccatagagatttaaagcctgagaatttacctcttggatgtcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73750" stop="69476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73450" g_stop="73359" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="326" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="389" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="461" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="569" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69804" g_stop="69776" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="599" r_length="30" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E265020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73450" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTA-CTCTTGGATGTCAATGG</genome_strand>
        <mrna_strand>TTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACCTCTTGGATGTCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348414" ref_strand="+" ref_description="SGN-E348414 [cTOF-27-J24]">
      <seq>gtacaattattacagcaacattagaatttcaatatttggatgttgccttcttttcaacttaccatatatttgtccaaatttttgaggatttctaagctgctgtaatcaatcttttttgacccccaaacaacaaaggctgcaactttcatacttcatctttatctttatcttggccaacaccccatttcaaaatttcagctcaaataaaaggttctttaagaaggattacgcctgcattctttaaaggactgtgcaagtatctcagttatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaagtttgcgaggaattcggagacaggagaagctgtagcgatcaagattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaattagacatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttcntggagttcgttacaggcggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatactttcagcagcttattaatgctgttgattattgtcatacanggggagtctaccatagagatttaaagcctgagaatttactctttggatgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73861" stop="69479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73562" g_stop="73359" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="438" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="501" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="574" r_length="73" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="682" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69804" g_stop="69779" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="709" r_length="27" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E348414" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73562" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTC-TGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTC-TTGGATGTCAA</genome_strand>
        <mrna_strand>GTACAATTATTACAGCAACATTAGAATTTCAATATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCNTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATACANGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTCTTTGGATGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323629" ref_strand="+" ref_description="SGN-E323629 [cTOC-2-L8]">
      <seq>ttttttgacccccaaacaacaaaggctgcaactttcatacttcatctttatctttatcttggccaacaccccatttcaaaatttcagctcaaataaaaggttctttaagaaggattacgcctgcattctttaaaggactgtgcaagtatctcagttatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaagtttgcgaggaattcggagacaggagaagctgtagcgatcaagattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaattagacatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaggcggagagctctttgacaaaattgtaaatcatggacggatgcatgaaaaagaagcaaggaaatactttcagcagcttattaatgctgttgattattgtcatagcaggggagtctaccatagagatttaaagcctgagaatttactcttggatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73751" stop="69481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73451" g_stop="73359" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="327" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="390" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="462" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70021" g_stop="69914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="570" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69804" g_stop="69781" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="594" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E323629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73451" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69914"/>
          <exon e_start="69804" e_stop="69781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAGGTAAGGCAGTGCTACTTTTGCAGCCTTTTAGTTGTTAATTTCTGTTCTGTTTTGCCTTAAACCTCCCTTCTTTGTCTTACCTTTATTATGGCATGCTTTCATTATGCAGCCTGAGAATTTACTCTTGGATGTC</genome_strand>
        <mrna_strand>TTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG.............................................................................................................CCTGAGAATTTACTCTTGGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572931" ref_strand="+" ref_description="SGN-E572931 [32162]">
      <seq>tccacttaccatatttttgtccaaattttttgaggatttataagctgctgtaatcaatcttttttgacccccaaacaacaaaggctgcaactttcatactttcttcatctttatctttatcttggccaacatcccatattcaaaatttcagctcaagataaaagttctttaagaaggattacgcctgcactttttaaaggactgtgcaagtatctcagtaatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaaatttgcgaggaattcggagacaggagaacctgtagcaatcaaaattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaacgttaatcaggcatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaccgtggagagctctttgaccaaattgtcaatcatggacggatgcctgaaaacgaagcaggaaatattttccagcagttattaatgctgtctgattactggtcaatagcaggggagtctacccatagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73809" stop="69620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73509" g_stop="73359" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="391" r_length="233" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="455" r_length="64" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="0.92"/>
            <acceptor a_prob="0.892" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="528" r_length="73" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70021" g_stop="69920" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="633" r_length="105" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E572931" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73509" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTACCATATATTTGTCCAAA-TTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATA----CTTCATCTTTATCTTTATCTTGGCCAACACCCCAT-TTCAAAATTTCAGCTCAA-AGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAA-GTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACA-GGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTT-CAGCAGCTTATTAATGCTGT-TGATTA-TTGTC-ATAGCAGGGGAGTCTA-CCATAGAGAT</genome_strand>
        <mrna_strand>TCCACTTACCATATTTTTGTCCAAATTTTTTGAGGATTTATAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTTCTTCATCTTTATCTTTATCTTGGCCAACATCCCATATTCAAAATTTCAGCTCAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAA-GTTCTTTAAGAAGGATTACGCCTGCACTTTTTAAAGGACTGTGCAAGTATCTCAGTAATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAATTTGCGAGGAATTCGGAGACAGGAGAACCTGTAGCAATCAAAATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAACGTTAATCAGGCATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACACCGTGGAGAGCTCTTTGACCAAATT...................................................................................................................................................................................................................GTCAATCATGGACGGATGCCTGAAAACGAAGC-AGGAAATATTTTCCAGCAG-TTATTAATGCTGTCTGATTACTGGTCAATAGCAGGGGAGTCTACCCATAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265019" ref_strand="+" ref_description="SGN-E265019 [cLEI-2-G3]">
      <seq>tttttgacccccaaacaacaaaggctgcaactttcatacttcatctttatctttatcttggccaacaccccatttcaaaatttcagctcaaataaaaggttctttaagaaggattacgcctgcattctttaaaggactgcgcaagtatctcagttatgaatcaggcaaaaatcaagcgcagagttggtgaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaagtttgcgaggaattcggagacaggagaagctgtatcgatcaagattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaattagacatccacatgtcgttcagttatacgaggtgttggctagcaagacaaagatattcattgttctggagttcgttacaagcggagagctctttgacaaaattggaaatcatgggacggatgcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73750" stop="69929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73450" g_stop="73359" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="326" r_length="234" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71535" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="389" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70304" g_stop="70233" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="461" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70021" g_stop="69998" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="486" r_length="25" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E265019" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73450" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71535"/>
          <exon e_start="70304" e_stop="70233"/>
          <exon e_start="70021" e_stop="69998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAGGTTTGTCCTCTCTGTATGTCAATGTGTATGTACTTGTGTGTTGTGTGTGCGTATGTAAGTTCTGGTGATTGTGGTTTTCTGTATGCCTTTCTGATCATATGGATGTATATACTGATCGTACAGGCTGATATACGTACCACCAACCTGTAGGTTAAATAGTAAGCGACCCGTTAATTTGCATTTGGTTATGCATCATGGGTTGCCAGCAGGTACCTCCATTCTAGAAATGATGTGTTGAGGATCTCACTTCAAATCTTCACCTCAACAATCTTTCAGAAAGACGTCTTTAATTCACACTACCAAAAGGATAATTTGATCAGCTGCCTACCGATAAATAAAAGCTTAAGCATTCTGCAGAGAATTTATAACTTACCTTATGACAAGACAAAGTCTATTGTACAGAACAAACTAGTAATTGATTTGTTAGTGCGATTAGCTAGAATCAATGTGGCCTCGTTCAGTTTTTTATGTGTCCTTTCCAATTGAGCAGATTCCACTTCATTCAAGGTTTTTGGAGCAAAGATTAAAATGTATTCTGTAGCCTAGCTTCTCTGTGCCTATCTCGTTGAACAAACATTTATGCTTGTGCTAGATTTTAGTACCTACCTTTTTTAACCTTTGGTTGTATTTTGATGGTTCCTTGCCTTACATATTACTAATAATTTGATCTGCTTATTATTTGTTCAGTTATTTATTCTATAGATCTAGTCTTATAATTAAAATTCCAGTAACACATCAGCATTTAACCTACTGAAGTTGATGAGAGTAAAGGCAGATTTTGGCCTTGTAACGTAACCCTATATTGACATGCAGATATATTACTGGTATCCATAAACTGCAGTGGAATTGGCTAATATACTGGAGTAGTTAGTTAATCTTCTTGATCTACTCATGGTACTTTCCAATTTTTTGAGAGTTAACATCTATATGAGATACATTATCAAAATCTTGAAAAATCAAAGAATTAGAAAAACTCAAGTTAAAATTTCTGGAATTGCGAGTGTCCAATTTGGGGAAAGAAGATGTTCCGAATTTTGCTAAAGACCTTTTGGCATGTCATGCACTAATTGCTTGCCTAGTACATTAAATCTGTTATCGAACAACTTATGTTTTGAATATTTTGTATATTTGCAATAACCTACTATAGATAAGATGTGACTGTGGATAATGGTAATGGCCAGGGTTCGTATGCTACACTTCTGAATCCATGCTCTTCTCGTCTGTCCGCAGGTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATTGTAAGGATGATTCTTCCTTTCTTCTAATTTATTCGGTTCCCCTACCTTAGGAGATAAATAAATTGACCAAAGAGAATGACCTTGCATCTCACTGATTGCAAATTTAGGTTTCATGTGTCCTTCCTAAGCAATTCAAACCTATTTGGCATGAACTTTTTTTTCGGACGACTTAGCATGTCATTAAGATGTTATCTGTTTTATTGGCATATAGGTAAATCAT-GGACGGATGCATGAA</genome_strand>
        <mrna_strand>TTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGCGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTGAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTATCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAAGCGGAGAGCTCTTTGACAAAATT...................................................................................................................................................................................................................GGAAATCATGGGACGGATGCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246965" ref_strand="+" ref_description="SGN-E246965 [cLEF-41-G19]">
      <seq>attattacagcaacattagaatttcaagatttggatgttgccttcttttcaacttaccatatatttgtccaaatttttgaggatttctaagctgctgtaatcaatcttttttgacccccaaacaacaaaggctgcaactttcatacttcatctttatctttatcttggccaacaccccatttcaaaatttcagctcaaataaaaggttctttaagaaggattacgcctgcattctttaaaggactgtgcaagtatctcagttatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaagtttgcgaggaattcggagacaggagaagctgtagcgatcaagattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaattagacatccacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73857" stop="71251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73557" g_stop="73359" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="433" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71551" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="480" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E246965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73557" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGT</genome_strand>
        <mrna_strand>ATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472397" ref_strand="+" ref_description="SGN-E472397 [cSTB-28-H21]">
      <seq>gtcaattactacaacaacaatctttgtatagttgtgtggttgtggtacaaataaaccatcttgagattccattggaagagtaaaagttctttaagaaggattacgcctgcactttttaaaggactgtgcaagtatctcagtaatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaaatttgcgaggaattcggagacaggagaacctgtagcgatcaaaattcttgataaggataaggtgcttaagcacaaaatggctgagcagataaagcgggagatagctacaatgaagttaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="74002" stop="71264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73702" g_stop="73624" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73623" i_stop="72084" i_length="1540">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="313" r_length="233" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71564" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="347" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E472397" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73702" e_stop="73624"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATTACTACAA-AACAATCTTTGTATAGTTGTGTGGCTGTGGTACAAATAAACCATCTTGAGATTCCATTGGAAGAGGTTAAAAAAAAAAGACTATTTCATTTTTTTATAGTTGTTATCTTTGTTGTTGGGAGAATATTTACAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGAAGTTAATTA</genome_strand>
        <mrna_strand>GTCAATTACTACAACAACAATCTTTGTATAGTTGTGTGGTTGTGGTACAAATAAACCATCTTGAGATTCCATTGGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAA-GTTCTTTAAGAAGGATTACGCCTGCACTTTTTAAAGGACTGTGCAAGTATCTCAGTAATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAATTTGCGAGGAATTCGGAGACAGGAGAACCTGTAGCGATCAAAATTCTTGATAAGGATAAGGTGCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGAAGTTAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442309" ref_strand="+" ref_description="SGN-E442309 [cSTA-32-P5]">
      <seq>caactttcatactttcttcatctttatctttatcttggccaacatcccatttcaaaatttcagctcaaataaaagttctttaagaaggattacgcctgcactttttaaaggactgtgcaagtatctcagtaatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggcgagggaacatttgctaaagttaaatttgcgaggaattcggagacaggagaacctgtagcaatcaaaattcttgataaggataaggtccttaagcacaaaatggctgagcagataaagcgggagatagctacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73720" stop="71273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73411" g_stop="73359" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="69" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71850" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="302" r_length="233" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71597" g_stop="71573" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="327" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E442309" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73411" e_stop="73359"/>
          <exon e_start="72083" e_stop="71850"/>
          <exon e_start="71597" e_stop="71573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAGGTCAATCTTCATCCATTCTTCATGCTTTCTGAAACTTTAATATATTTTCTATTTGTCTGGACTCTGGTGTTATGGTTACCAATTATTTTGGTAACGTAGATTACCGAGAATCTGTACGAATACTGTCTCTTCGACATCTTACATGGTTGTTGAATTATGCATTTCATTTTCTGATACTGTTGTCAGTTTCTTGAATGTTGTTTTTGTTTTGTGGGATGATAACATCTTATATCTCTTGTTCAAAATTGACAGATAAAGCGGGAGATAGCTACAATGA</genome_strand>
        <mrna_strand>TTCATCTTTATCTTTATCTTGGCCAACATCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAA-GTTCTTTAAGAAGGATTACGCCTGCACTTTTTAAAGGACTGTGCAAGTATCTCAGTAATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGCGAGGGAACATTTGCTAAAGTTAAATTTGCGAGGAATTCGGAGACAGGAGAACCTGTAGCAATCAAAATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG............................................................................................................................................................................................................................................................ATAAAGCGGGAGATAGCTACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324635" ref_strand="+" ref_description="SGN-E324635 [cTOC-9-C16]">
      <seq>ggatttctaagctgctgtaatcaatcggtttttacccccgagcaacaaaggctgcaactttcatacttcatctttatctttatcttggccaacaccccatttcaaaatttcagctcaaataaaaggttctttaagaaggattacgcctgcattctttaaaggactgtgcaagtatctcagttatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaaagttaagtttgcgaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73777" stop="71625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73477" g_stop="73359" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71925" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="278" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E324635" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73477" e_stop="73359"/>
          <exon e_start="72083" e_stop="71925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAAT</genome_strand>
        <mrna_strand>GGATTTCTAAGCTGCTGTAATCAATCGGTTTTTACCCCCGAGCAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335794" ref_strand="+" ref_description="SGN-E335794 [cTOE-6-I5]">
      <seq>tcaattactacaaaacaatctttgtatagttgtgtggctgtggtacaaataaaccatcttgagattccattggaagaggttaaaaaaaaaagactatttcatttttttatagttgttatctttgttgttgggagaatatttacaattattacagcaacattagaatttcaagatttggatgttgccttcttttcaacttaccatatatttgtccaaatttttgaggatttctaagctgctgtaatcaatcttttttgacccccaaacaacaaaggctgcaactttcatacttcatctttatctttatcttggccaacaccccatttcaaaatttcagctcaaataaaaggttctttaagaaggattacgcctgcattctttaaaggactgtgcaagtatctcagttatgaatcangcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="74001" stop="71644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73701" g_stop="73359" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71944" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="483" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E335794" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73701" e_stop="73359"/>
          <exon e_start="72083" e_stop="71944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTACTACAAAACAATCTTTGTATAGTTGTGTGGCTGTGGTACAAATAAACCATCTTGAGATTCCATTGGAAGAGGTTAAAAAAAAAAGACTATTTCATTTTTTTATAGTTGTTATCTTTGTTGTTGGGAGAATATTTACAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAA</genome_strand>
        <mrna_strand>TCAATTACTACAAAACAATCTTTGTATAGTTGTGTGGCTGTGGTACAAATAAACCATCTTGAGATTCCATTGGAAGAGGTTAAAAAAAAAAGACTATTTCATTTTTTTATAGTTGTTATCTTTGTTGTTGGGAGAATATTTACAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCANGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361454" ref_strand="+" ref_description="SGN-E361454 [cLPP-6-J8]">
      <seq>agaatatttacaattattacagcaacattggaatttcaagatttggatgttgccttcttttccacttaccatatatttgtccaaatttttgaggatttataagctgctgtaatcaatcttttttgatccccaaacaacaaaggctgcaactttcatacttccttcatctttatcttggccaacaccccatttcaaaatttcagctcaaataaaaggttcttttagaaggattacgcctgcattctttaaaggactgtgcaagtatctcagttatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattggtgagggaacatttgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73869" stop="71644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73569" g_stop="73359" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71944" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="349" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E361454" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73569" e_stop="73359"/>
          <exon e_start="72083" e_stop="71944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATTTACAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAA</genome_strand>
        <mrna_strand>AGAATATTTACAATTATTACAGCAACATTGGAATTTCAAGATTTGGATGTTGCCTTCTTTTCCACTTACCATATATTTGTCCAAATTTTTGAGGATTTATAAGCTGCTGTAATCAATCTTTTTTGATCCCCAAACAACAAAGGCTGCAACTTTCATACTTC--CTTCATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGTTCTTTTAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469037" ref_strand="+" ref_description="SGN-E469037 [cSTB-10-A4]">
      <seq>caattattacagcaacattagaatttcaagatttggatgttgccttcttttccacttaccatatttttgtccaaatttttaaggatttataagctgctgtaatcaatctttttgacccccaaacaacaaaggctgcaactttcatactttcttcatctttatctttatcttggccaacaccccatttcaaaatttcagctcaaataaaagttctttaagaaggattacgcctgcactttttaaaggactgtgcaagtatctcagtaatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaaggacaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73859" stop="71663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73559" g_stop="73359" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71963" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="324" r_length="120" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E469037" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73559" e_stop="73359"/>
          <exon e_start="72083" e_stop="71963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATA----CTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTG</genome_strand>
        <mrna_strand>CAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCCACTTACCATATTTTTGTCCAAATTTTTAAGGATTTATAAGCTGCTGTAATCAATC-TTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTTCTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAA-GTTCTTTAAGAAGGATTACGCCTGCACTTTTTAAAGGACTGTGCAAGTATCTCAGTAATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549301" ref_strand="+" ref_description="SGN-E549301 [TUS-69-C12]">
      <seq>ctccccctcctccttaaacaaataacagaactgaataaacaaacttgtgttttttcttattccatttctgttatccttattgtcccttccaagatataccttctaacttttcctatttctaaaggaagtaagaaaggtcgaaagttcttgttcgggacctcttttgtttaactttctagcactttgattgttgtggtattttgttgtagtgactgctccttttatgtattctttcttgaacattttgtcttggcttcttctctctccctatgttttctttttttcgaactgcttttacttgagccgagggtgtattggaagcaacctctcgatctcctaaggtaggggtaaggtctgcctacagactccccttcccagactgggcatgttgttggtggaagaagcgattatgatggaaacttccttcaggaataaatccatcactcgttccactgtcaagatgcaagttggggtttctttttgtggtgcagttagtcaagttgtgttggaatatcaattttataattttttgtgatgggtcttggaattctgtgagtgcatgaaatgaacataaagattagtattttatgttaggaactcagatgtcttatggatgttttaatcattgtgcagtaaaaggttctttaagaaggattacgcctgcattctttgaaggactgtgcaagtatctcagttatgaatcaggcaaaaatcaagcgcagagttggtaaatatgaaatgggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73015" stop="71671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72715" g_stop="71971" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E549301" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72715" e_stop="71971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATT-CATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAG</genome_strand>
        <mrna_strand>CTCCCCCTCCTCCTTAAACAAATAACAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCTAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTCGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTGCTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGCCTACAGACTCCCCTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGATGCAAGTTGGGGTTTCTTTTTGTGGTGCAGTTAGTCAAGTTGTGTTGGAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATGAACATAAAGATTAGTATTTTATGTTAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTGAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566848" ref_strand="+" ref_description="SGN-E566848 [10882]">
      <seq>attattacagcaacattagaatttcaagatttggatgtgccttcttttccacttaccatatttttgtccaaattttgaggatttataagctgctgtaatcaatcttttttgacccccaaacaacaaaggctgcaactttcatactttcttcatctttatctttatcttggccaacatcccatttcaaaatttcagctcaaataaaagttctttaagaaggattacgcctgcactttttaaaggactgtgcaagtatctcagtaatgaatcaggcaaaaatcaagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73857" stop="71697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73557" g_stop="73359" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72083" g_stop="71997" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="287" r_length="86" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E566848" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73557" e_stop="73359"/>
          <exon e_start="72083" e_stop="71997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATA----CTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAAGTATGTATTTTTCTTTCCCTTTCTTGATTTTGGATTTTGTTTGGTATATTCGAATATGCTTGTTGTTTTGATATGTATGTGGGGAATTTGCCTTTTGGGGTTTTCTTGTAAACAGTGAATTTGCCTTTTGGGGTTTTCTTAAAAACAGTGAATTTAGGATTTTGAATCTTATTGGTTTGAGATCTTTTTTTTTTTTTAGGTTTCCATAGAAACAAGATAACCCCTTTTTCTACATTTCTTGATTCTCAAAAGGGTCCATTTTCTTGTTTCTATTTGGCCCCTTTTGAAGCTTATGTTTTATTTTTATAAAGTTTGTATTTTTATGCCACTGATTCTGGTTTGAAGCTTGTTTTCTTTCTCTCTCTACATTTATTTCTGGAATATAGTTCCTGAAGTGATAGAAGTTAAGCTGTAGTTTAGCTAGCTGCATTTTGCTGGGATCTGTTGCTGGTTAACTGTAATAAGGTTTAGGTAGTGGATCTTTCTCTCTCTCACACAGACACCTAGACAAATGTCTTTTGGTCAATGAATGATTCAACATTGCTTTGTTTTTTAATCAGTCTTACCTTCTTTAATCATTTCCTTTAAGTGTGTGACTATAATAATTGACCACTTTAATAAAATGATTTTGTGCCTTGATTCTCTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGC</genome_strand>
        <mrna_strand>ATTATTACAGCAACATTAGAATTTCAAGATTTGGATG-TGCCTTCTTTTCCACTTACCATATTTTTGTCCAAA-TTTTGAGGATTTATAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTTCTTCATCTTTATCTTTATCTTGGCCAACATCCCATTTCAAAATTTCAGCTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAA-GTTCTTTAAGAAGGATTACGCCTGCACTTTTTAAAGGACTGTGCAAGTATCTCAGTAATGAATCAGGCAAAAATCAAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355845" ref_strand="+" ref_description="SGN-E355845 [cLHT-12-E7]">
      <seq>tccccctcctccttaaacaaataacagaactgaataaacaaacttgtgttttttcttattccatttctgttatccttattgtcccttccaagatataccttctaacttttcctatttctaaaggaagtaagaaaggtcgaaagttcttgttcgggacctcttttgtttaactttctagcactttgattgttgtggtattttgttgtagtgactgctccttttatgtattctttcttgaacattttgtcttggcttcttctctctccctatgttttctttttttcgaactgcttttacttgagccgagggtgtattggaagcaacctctcgatctcctaaggtaggggtaaggtctgcctacagactccccttcccagactgggcatgttgttggtggaagaagcgattatgatggaaacttccttcaggaataaatccatcactcgttccactgtcaagatgcaagttggggtttctttttgtggtgcagttagtcaagttgtgtttggaatatcaattttataattttttgggatgggtcttggaattctgtgaatgcatgaaatgaacataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="73014" stop="71842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72714" g_stop="72142" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E355845" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72714" e_stop="72142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATT-CATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTG-TTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAA</genome_strand>
        <mrna_strand>TCCCCCTCCTCCTTAAACAAATAACAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCTAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTCGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTGCTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGCCTACAGACTCCCCTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGATGCAAGTTGGGGTTTCTTTTTGTGGTGCAGTTAGTCAAGTTGTGTTTGGAATATCAATTTTATAATTTTTTGGGATGGGTCTTGGAATTCTGTGAATGCATGAAATGAACATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244185" ref_strand="+" ref_description="SGN-E244185 [cLEE-1-F20]">
      <seq>tcaatacggaagaaaacatgaagagtttcatcatgctttttctttttgctgtgacaatttttttcactttgtttgaccattcactaggtgatgatcctaaattttgtccaggaactttcacagttaatgacgtatgtgctaatattagttgtggatatcaagctgtatttcattggccagcaagtaaaatgcctcatagttgtgtttgtactgcttcgggaagcaatcaaagtctttgtacttgtcaaattgtttgtgatgcaaaataatgtaataaaagtgcttattattgatgttgattcagtaattgtatgtatcgattgaatgattgagaataaataataacgtataatatgaaaaacgttaaaaattgagaaaccaaaaaaaaaaaaaaaataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="+" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="91590" stop="92697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91890" g_stop="91976" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91977" i_stop="92098" i_length="122">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92099" g_stop="92412" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="401" r_length="314" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="+" ref_id="SGN-E244185" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91890" e_stop="91976"/>
          <exon e_start="92099" e_stop="92412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATACGGAAGAAAACATGAAGAGTTTCATCATGCTTTTTCTTTTTGCTGTGACAATTTTTTTCACTTTGTTTGACCATTCACTAGGTACATTTTTTCCTTCAACACATATGAAATTATTTTATCTACAATCTGAAAATATTTATTTTCATCATTTATCTTTTTAATCATATAGTTTGATGTGTACTCTTTTCATTATTTTGTATCAGGTGATGATCCTAAATTTTGTCCAGGAACTTTCACAGTTAATGACGTATGTGCTAATATTAGTTGTGGATATCAAGCTGTATTTCATTGGCCAGCAAGTAAAATGCCTCATAGTTGTGTTTGTACTGCTTCGGGAAGCAATCAAAGTCTTTGTACTTGTCAAATTGTTTGTGATGCAAAATAATGTAATAAAAGTGCTTATTATTGATGTTGATTCAGTAATTGTATGTATCGATTGAATGATTGAGAATAAATAATAACGTATAATATGAAAAACGTTAAAAATTGAGAAACCAAAATAGCATCTAAAAGCTAC</genome_strand>
        <mrna_strand>TCAATACGGAAGAAAACATGAAGAGTTTCATCATGCTTTTTCTTTTTGCTGTGACAATTTTTTTCACTTTGTTTGACCATTCACTAG..........................................................................................................................GTGATGATCCTAAATTTTGTCCAGGAACTTTCACAGTTAATGACGTATGTGCTAATATTAGTTGTGGATATCAAGCTGTATTTCATTGGCCAGCAAGTAAAATGCCTCATAGTTGTGTTTGTACTGCTTCGGGAAGCAATCAAAGTCTTTGTACTTGTCAAATTGTTTGTGATGCAAAATAATGTAATAAAAGTGCTTATTATTGATGTTGATTCAGTAATTGTATGTATCGATTGAATGATTGAGAATAAATAATAACGTATAATATGAAAAACGTTAAAAATTGAGAAACCAAAAAAAAAAAAAAAATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242172" ref_strand="+" ref_description="SGN-E242172 [cLED-37-C23]">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="99616" stop="98623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99316" g_stop="98923" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E242172" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99316" e_stop="98923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCATGAACTTCAACTTATTCTCTATTATTTGATTGCTGAAGATATGATAGTAAATGAAGCTTTTCAAGTGTCTGCAATGATCAAGAAGCTGTCTCCTTCGTGGAACGATTTCAAGAATTATCTAAAGCACAAGCGTAAGGAAATAAAGCTTAAAGATCTTTCGATTCGGCTCAAGATTGAGGAAGATAACAAAAACTCCGAAAAGAAGTCTCGTAAGAGTTCAACAATCATTGGAGTTCATATTGTTGAAGAAGC-CCTACCAAAGAAAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTTAGAACAGGCCAAGAAGAAATTCAAAAGCAACTGTTACAATTGTGGTAAGGCTGGCCATAGGTCTTTTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242208" ref_strand="+" ref_description="SGN-E242208 [cLED-37-E10]">
      <seq>gtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgggattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcccgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="99612" stop="98651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99312" g_stop="98951" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E242208" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99312" e_stop="98951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGTTGGATCACAAGTGCATGAACTTCAACTTATTCTCTATTATTTGATTGCTGAAGATATGATAGTAAATGAAGCTTTTCAAGTGTCTGCAATGATCAAGAAGCTGTCTCCTTCGTGGAACGATTTCAAGAATTATCTAAAGCACAAGCGTAAGGAAATAAAGCTTAAAGATCTTTCGATTCGGCTCAAGATTGAGGAAGATAACAAAAACTCCGAAAAGAAGTCTCGTAAGAGTTCAACAATCATTGGAGTTCATATTGTTGAAGAAGC-CCTACCAAAGAAAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTTAGAACAGGCCAAGAAGAAATTCAAAAGCAACTGTTACAATT</genome_strand>
        <mrna_strand>GTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGGGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCCCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267630" ref_strand="+" ref_description="SGN-E267630 [cLEI-8-F14]">
      <seq>aaaaatgcatatggcagagcggcagtgggcagaggcagctacggacttctttgaagctttcaagaactatgatgaagctgggaatcagaggcgcatccagtgtctaaagtacttggttctggcaaatatgctgatggagtctgaggttaacccttttgatggccaagaagcaaaaccgtacaaaaatgaccctgagatactggcaatgactaaccttatagcagcatatcaacgaaatgagatcttagagtttgagaaaattcttaagagtaatagaagaacaataatggatgatcccttcatcagaaattacattgaagatcttttaagaaatgtcagaacccaagtgctgctgaagatcattaagccttacacaagaatccggattcccttcatttccaaggagcttaatgtgccagaaaaagacgtcggggagttgttggtctcactcatcttggacaaccgtatcaatgggcacattgatcaagtgaaccggttgctagaatgtggagatagatctaaaggaatgaagaaatacgctgccatcgacaaatggaacacacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="104664" stop="101839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104364" g_stop="104257" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104256" i_stop="103419" i_length="838">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103418" g_stop="103350" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="177" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103349" i_stop="103204" i_length="146">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103203" g_stop="103113" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="268" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103112" i_stop="103021" i_length="92">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103020" g_stop="102886" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="403" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102885" i_stop="102390" i_length="496">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102389" g_stop="102277" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="516" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102276" i_stop="102189" i_length="88">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102188" g_stop="102139" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="566" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E267630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104364" e_stop="104257"/>
          <exon e_start="103418" e_stop="103350"/>
          <exon e_start="103203" e_stop="103113"/>
          <exon e_start="103020" e_stop="102886"/>
          <exon e_start="102389" e_stop="102277"/>
          <exon e_start="102188" e_stop="102139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCTGGGAATCAGAGGCGCATCCAGTGTCTAAAGTATGTGAGCGGTTCATTGAGTTTGTTTTGTTTGCCTTCTTCCTTATTTTGGCATTTTCTTCTGGGGTAGAACAGATGGGAAGAGTACAGTTGGAAAGTAATAACATCTTGTACACTGCAAAAGTTACTAGATCAATCTACATGGTATTTTACTAAGTCTCATGTAGATGATATTTAAAAGAAAAATGTGTAAGGTCATCGCTGTTGCTGCTTAGACGCAGGCACTTGAATGCATTCTAAGTACAGCTTCATATGAGATTTCGTTGACATTTTCTGTTTGTGAAATAAGGTCTCAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAGCTTTTTAAGGAGTCCACCCATCTCATTAACCATCGATGTGGGACTTTTGTCATTCTTTAACACCCCACCATGCTTTGATACCATGTGAAATTAGGTCTTAGGCATAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAACCTTATAAGGAGTCCACCCATTTCATTAACCGCCAATGTGGGACTTTTTGTCATTCTTTAACATGTTAAATTAGATATTAGGCCTTACTGACACCCCAAAAGCTTAGCTCAATGGTGGAGCAGATTATGACTAAATCTGCCAACTCATTCAACACTGTTTAAGGGGGTGTGTCTCAGAATTTCTTAGCTGCATGTTAACATAATATTTATCTCTTTTCACTTTAGTTGTTAATGGTTCCTAGGCAATTCTCTTGCTGATTCACCTTCATTTCTCTCTCTTGCACGCCGCAGAAGAAACATTGGTCTGCCTGATATTGTGGTCACTTGGTTCCATCTTACAGGTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACCGTGAGCAGTTTAAGAGTTCTAATAATTTTCTTAATAAAGAGATTAGGACACGTACTCTTATCAGTTTTGTGGTTAGAGTCACTGGACCAAGTAATACGCATCAACTTAATTGCATTGGTGTTGGTACTGTGTTTTATACTTTTCAGGTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAGGTGCAACTATCAAAATATTGCTACTACAAGTCCTCCAATTCATAGTTACTATTGACTGTCATTCTGAATATGATTTCCTTGATGTTTTTCAGAGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAGGTAAATAGGCTTGTTAAAGTTTGCTATCTTGTTATGGAGTATTACAGGAGTTTCTTCCCCTAATATTGCTCTTAGCTTCTCAATCTTAAGACAGTGATTTGGGATGGGTGTGTGTGGAAGGACTGAACAAGGTGTTAGTTTATCAATTAACTCGTTATCTAAAACCGAGATAAACTCCTTTTTTATAACCAAGATTTTCCAAGGGCTAGTTATGCATCATTCAAGCTCTGTGGATAATGGGCCCTTCCCTCTACCCTGGACTTAAATACCAGATTTTTATTTCCAGAACAATGTGTGGTTAACCCACAAATCATGTGCTTTCTATCAATAAACTGTTTTATAGATGGCATAACGGTGCATATCACTTCATAATTGGAACAGTGCATACCATATAACATTTGAATTTGGAACATCCAGATAATATCCAGACATATTCTCCATGGTTCTCATAAGTAATAGACTTCCTAATTGGTTTCTATTAATTAATAACATGCAGGAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAACCGGTTGCTAGAATGTGGAGATAGGTGAAACCCTGAACTCGACATTGTGATAATTTCGCTGTTTTTGGCTGACATCACTTCTAATTTATTTTTCCTACTTTTATTCATGCAGATCTAAAGGAATGAAGAAATACGCTGCCATCGACAAATGGAACACACAAC</genome_strand>
        <mrna_strand>AAAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCTGGGAATCAGAGGCGCATCCAGTGTCTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACC..................................................................................................................................................GTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAG............................................................................................AGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAACCGGTTGCTAGAATGTGGAGATAG........................................................................................ATCTAAAGGAATGAAGAAATACGCTGCCATCGACAAATGGAACACACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256113" ref_strand="+" ref_description="SGN-E256113 [cLEG-37-H17]">
      <seq>actaaagcactttcagtcaagtcagcaatccctcacccaagaataatgggaataattcgtgaatgtggaggaaaaatgcatatggcagagcggcagtgggcagaggcagctacggacttctttgaagctttcaagaactatgatgaagctgggaatcagaggcgcatccagtgtctaaagtacttggttctggcaaatatgctgatggagtctgaggttaacccttttgatggccaagaagcaaaaccgtacaaaaatgaccctgagatactggcaatgactaaccttatagcagcatatcaacgaaatgagatcttagagtttgagaaaattcttaagagtaatagaagaacaataatggatgatcccttcatcagaaattacattgaagatcttttaagaaatgtcagaacccaagtgctgctgaagatcattaagccttacacaagaatccggattcccttcatttccaaggagcttaatgtgccagaaaaagacgtcggggagttgttggtctcactcatcttggacaaccgtatcaatgggcacattgatcaagtgaaccggttgctagaatgtggagatagatctaaaggaatgaagaaatacgctgccatcgacaaatggaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="104735" stop="101844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104435" g_stop="104257" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104256" i_stop="103419" i_length="838">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103418" g_stop="103350" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="248" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103349" i_stop="103204" i_length="146">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103203" g_stop="103113" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="339" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103112" i_stop="103021" i_length="92">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103020" g_stop="102886" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="474" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102885" i_stop="102390" i_length="496">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102389" g_stop="102277" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="587" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102276" i_stop="102189" i_length="88">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102188" g_stop="102144" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="632" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E256113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104435" e_stop="104257"/>
          <exon e_start="103418" e_stop="103350"/>
          <exon e_start="103203" e_stop="103113"/>
          <exon e_start="103020" e_stop="102886"/>
          <exon e_start="102389" e_stop="102277"/>
          <exon e_start="102188" e_stop="102144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAAGCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGGAATAATTCGTGAATGTGGAGGAAAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCTGGGAATCAGAGGCGCATCCAGTGTCTAAAGTATGTGAGCGGTTCATTGAGTTTGTTTTGTTTGCCTTCTTCCTTATTTTGGCATTTTCTTCTGGGGTAGAACAGATGGGAAGAGTACAGTTGGAAAGTAATAACATCTTGTACACTGCAAAAGTTACTAGATCAATCTACATGGTATTTTACTAAGTCTCATGTAGATGATATTTAAAAGAAAAATGTGTAAGGTCATCGCTGTTGCTGCTTAGACGCAGGCACTTGAATGCATTCTAAGTACAGCTTCATATGAGATTTCGTTGACATTTTCTGTTTGTGAAATAAGGTCTCAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAGCTTTTTAAGGAGTCCACCCATCTCATTAACCATCGATGTGGGACTTTTGTCATTCTTTAACACCCCACCATGCTTTGATACCATGTGAAATTAGGTCTTAGGCATAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAACCTTATAAGGAGTCCACCCATTTCATTAACCGCCAATGTGGGACTTTTTGTCATTCTTTAACATGTTAAATTAGATATTAGGCCTTACTGACACCCCAAAAGCTTAGCTCAATGGTGGAGCAGATTATGACTAAATCTGCCAACTCATTCAACACTGTTTAAGGGGGTGTGTCTCAGAATTTCTTAGCTGCATGTTAACATAATATTTATCTCTTTTCACTTTAGTTGTTAATGGTTCCTAGGCAATTCTCTTGCTGATTCACCTTCATTTCTCTCTCTTGCACGCCGCAGAAGAAACATTGGTCTGCCTGATATTGTGGTCACTTGGTTCCATCTTACAGGTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACCGTGAGCAGTTTAAGAGTTCTAATAATTTTCTTAATAAAGAGATTAGGACACGTACTCTTATCAGTTTTGTGGTTAGAGTCACTGGACCAAGTAATACGCATCAACTTAATTGCATTGGTGTTGGTACTGTGTTTTATACTTTTCAGGTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAGGTGCAACTATCAAAATATTGCTACTACAAGTCCTCCAATTCATAGTTACTATTGACTGTCATTCTGAATATGATTTCCTTGATGTTTTTCAGAGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAGGTAAATAGGCTTGTTAAAGTTTGCTATCTTGTTATGGAGTATTACAGGAGTTTCTTCCCCTAATATTGCTCTTAGCTTCTCAATCTTAAGACAGTGATTTGGGATGGGTGTGTGTGGAAGGACTGAACAAGGTGTTAGTTTATCAATTAACTCGTTATCTAAAACCGAGATAAACTCCTTTTTTATAACCAAGATTTTCCAAGGGCTAGTTATGCATCATTCAAGCTCTGTGGATAATGGGCCCTTCCCTCTACCCTGGACTTAAATACCAGATTTTTATTTCCAGAACAATGTGTGGTTAACCCACAAATCATGTGCTTTCTATCAATAAACTGTTTTATAGATGGCATAACGGTGCATATCACTTCATAATTGGAACAGTGCATACCATATAACATTTGAATTTGGAACATCCAGATAATATCCAGACATATTCTCCATGGTTCTCATAAGTAATAGACTTCCTAATTGGTTTCTATTAATTAATAACATGCAGGAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAACCGGTTGCTAGAATGTGGAGATAGGTGAAACCCTGAACTCGACATTGTGATAATTTCGCTGTTTTTGGCTGACATCACTTCTAATTTATTTTTCCTACTTTTATTCATGCAGATCTAAAGGAATGAAGAAATACGCTGCCATCGACAAATGGAACAC</genome_strand>
        <mrna_strand>ACTAAAGCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGGAATAATTCGTGAATGTGGAGGAAAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCTGGGAATCAGAGGCGCATCCAGTGTCTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACC..................................................................................................................................................GTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAG............................................................................................AGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAACCGGTTGCTAGAATGTGGAGATAG........................................................................................ATCTAAAGGAATGAAGAAATACGCTGCCATCGACAAATGGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546464" ref_strand="+" ref_description="SGN-E546464 [TUS-69-N12]">
      <seq>gtcattctttaacaccccaccctgctttgatatcatgtgaaattaggtcttaggcatgattcacaacccaaaaactaactcaaaggaaggaggattgcccaaaccttataaggagttcacccatctcattaaccgtcgatgtggactttttgtcattctgtaacatgtgaaactaggttttagacctaacttacaccccaaaagctagctcaatggtggagcagattatgtctacatctgccaactcattcaacacggttaaagggggtacttggttctggcaaatatgctgatggagtctgaggttaacccttttgatggccaagaagcaaaaccgtacaaaaatgaccctgagatactggcaatgactaaccttatagcagcatatcaacgaaatgagatcttagagtttgagaaaattcttaagagtaatagaagaacaataatggatgatcccttcattagaaattacattgaagatcttttaagaaatgtcagaacccaagtgctgctgaagatcattaaaccttacacaagaatccggattcccttcatttccaaggagcttaatgtgccagaaaaagacgtcgaggagttgttggtctcactcatcttggacaaccgtatcaatgggcacattgatcaagtgaaccggttgctagaatgtggagatagatctaaaggaatgaagaaatacgctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="104162" stop="101861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103862" g_stop="103594" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103593" i_stop="103419" i_length="175">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103418" g_stop="103350" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="336" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103349" i_stop="103204" i_length="146">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103203" g_stop="103113" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="427" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103112" i_stop="103021" i_length="92">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103020" g_stop="102886" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="562" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102885" i_stop="102390" i_length="496">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102389" g_stop="102277" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="675" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102276" i_stop="102189" i_length="88">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102188" g_stop="102161" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="703" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E546464" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103862" e_stop="103594"/>
          <exon e_start="103418" e_stop="103350"/>
          <exon e_start="103203" e_stop="103113"/>
          <exon e_start="103020" e_stop="102886"/>
          <exon e_start="102389" e_stop="102277"/>
          <exon e_start="102188" e_stop="102161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTCTTTAACACCCCACCATGCTTTGATACCATGTGAAATTAGGTCTTAGGCATAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAACCTTATAAGGAGTCCACCCATTTCATTAACCGCCAATGTGGGACTTTTTGTCATTCTTTAACATGTTAAATTAGATATTAGGCCTTACTGACACCCCAAAAGCTTAGCTCAATGGTGGAGCAGATTATGACTAAATCTGCCAACTCATTCAACACTGTTTAAGGGGGTGTGTCTCAGAATTTCTTAGCTGCATGTTAACATAATATTTATCTCTTTTCACTTTAGTTGTTAATGGTTCCTAGGCAATTCTCTTGCTGATTCACCTTCATTTCTCTCTCTTGCACGCCGCAGAAGAAACATTGGTCTGCCTGATATTGTGGTCACTTGGTTCCATCTTACAGGTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACCGTGAGCAGTTTAAGAGTTCTAATAATTTTCTTAATAAAGAGATTAGGACACGTACTCTTATCAGTTTTGTGGTTAGAGTCACTGGACCAAGTAATACGCATCAACTTAATTGCATTGGTGTTGGTACTGTGTTTTATACTTTTCAGGTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAGGTGCAACTATCAAAATATTGCTACTACAAGTCCTCCAATTCATAGTTACTATTGACTGTCATTCTGAATATGATTTCCTTGATGTTTTTCAGAGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAGGTAAATAGGCTTGTTAAAGTTTGCTATCTTGTTATGGAGTATTACAGGAGTTTCTTCCCCTAATATTGCTCTTAGCTTCTCAATCTTAAGACAGTGATTTGGGATGGGTGTGTGTGGAAGGACTGAACAAGGTGTTAGTTTATCAATTAACTCGTTATCTAAAACCGAGATAAACTCCTTTTTTATAACCAAGATTTTCCAAGGGCTAGTTATGCATCATTCAAGCTCTGTGGATAATGGGCCCTTCCCTCTACCCTGGACTTAAATACCAGATTTTTATTTCCAGAACAATGTGTGGTTAACCCACAAATCATGTGCTTTCTATCAATAAACTGTTTTATAGATGGCATAACGGTGCATATCACTTCATAATTGGAACAGTGCATACCATATAACATTTGAATTTGGAACATCCAGATAATATCCAGACATATTCTCCATGGTTCTCATAAGTAATAGACTTCCTAATTGGTTTCTATTAATTAATAACATGCAGGAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAACCGGTTGCTAGAATGTGGAGATAGGTGAAACCCTGAACTCGACATTGTGATAATTTCGCTGTTTTTGGCTGACATCACTTCTAATTTATTTTTCCTACTTTTATTCATGCAGATCTAAAGGAATGAAGAAATACGCTGCC</genome_strand>
        <mrna_strand>GTCATTCTTTAACACCCCACCCTGCTTTGATATCATGTGAAATTAGGTCTTAGGCATGATTCACAACCCAAAAACTAACTCAAAGGAAGGAGGATTGCCCAAACCTTATAAGGAGTTCACCCATCTCATTAACCGTCGATGT-GGACTTTTTGTCATTCTGTAACATGTGAAACTAGGTTTTAGACCTAACTTACACCCCAAAAGC-TAGCTCAATGGTGGAGCAGATTATGTCTACATCTGCCAACTCATTCAACACGGTTAAAGGGG...............................................................................................................................................................................GTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACC..................................................................................................................................................GTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAG............................................................................................AGTAATAGAAGAACAATAATGGATGATCCCTTCATTAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAACCTTACACAAGAATCCGGATTCCCTTCATTTCCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTAATGTGCCAGAAAAAGACGTCGAGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAACCGGTTGCTAGAATGTGGAGATAG........................................................................................ATCTAAAGGAATGAAGAAATACGCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264264" ref_strand="+" ref_description="SGN-E264264 [cLEG-70-H14]">
      <seq>actaaagcactttcagtcaagtcagcaatccctcacccaagaataatgggaataattcgtgaatgtggaggaaaatgcatatggcagagcggcagtgggcagaggcagctacggacttctttgaagctttcaagaactatgatgaagctgggaatcagaggcgcatccagtgtctaaagtacttggttctggcaaatatgctgatggagtctgaggttaacccttttgatggccaagaagcaaaaccgtacaaaaatgaccctgagatactggcaatgactaaccttatagcagcatatcaacgaaatgagatcttagagtttgagaaaattcttaagagtaatagaagaacaataatggatgatcccttcatcagaaattacattgaagatcttttaagaaatgtcagaacccaagtgctgctgaagatcattaagccttacacaagaatccggattcccttcatttccaaggagcttaatgtgccagaaaaagacgtcggggagttgttggtctcactcatcttggacaaccgtatcaatgggcacattgatcaagtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="104735" stop="102000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104435" g_stop="104257" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104256" i_stop="103419" i_length="838">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103418" g_stop="103350" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="247" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103349" i_stop="103204" i_length="146">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103203" g_stop="103113" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="338" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103112" i_stop="103021" i_length="92">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103020" g_stop="102886" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="473" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102885" i_stop="102390" i_length="496">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102389" g_stop="102300" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="563" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E264264" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104435" e_stop="104257"/>
          <exon e_start="103418" e_stop="103350"/>
          <exon e_start="103203" e_stop="103113"/>
          <exon e_start="103020" e_stop="102886"/>
          <exon e_start="102389" e_stop="102300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAAGCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGGAATAATTCGTGAATGTGGAGGAAAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCTGGGAATCAGAGGCGCATCCAGTGTCTAAAGTATGTGAGCGGTTCATTGAGTTTGTTTTGTTTGCCTTCTTCCTTATTTTGGCATTTTCTTCTGGGGTAGAACAGATGGGAAGAGTACAGTTGGAAAGTAATAACATCTTGTACACTGCAAAAGTTACTAGATCAATCTACATGGTATTTTACTAAGTCTCATGTAGATGATATTTAAAAGAAAAATGTGTAAGGTCATCGCTGTTGCTGCTTAGACGCAGGCACTTGAATGCATTCTAAGTACAGCTTCATATGAGATTTCGTTGACATTTTCTGTTTGTGAAATAAGGTCTCAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAGCTTTTTAAGGAGTCCACCCATCTCATTAACCATCGATGTGGGACTTTTGTCATTCTTTAACACCCCACCATGCTTTGATACCATGTGAAATTAGGTCTTAGGCATAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAACCTTATAAGGAGTCCACCCATTTCATTAACCGCCAATGTGGGACTTTTTGTCATTCTTTAACATGTTAAATTAGATATTAGGCCTTACTGACACCCCAAAAGCTTAGCTCAATGGTGGAGCAGATTATGACTAAATCTGCCAACTCATTCAACACTGTTTAAGGGGGTGTGTCTCAGAATTTCTTAGCTGCATGTTAACATAATATTTATCTCTTTTCACTTTAGTTGTTAATGGTTCCTAGGCAATTCTCTTGCTGATTCACCTTCATTTCTCTCTCTTGCACGCCGCAGAAGAAACATTGGTCTGCCTGATATTGTGGTCACTTGGTTCCATCTTACAGGTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACCGTGAGCAGTTTAAGAGTTCTAATAATTTTCTTAATAAAGAGATTAGGACACGTACTCTTATCAGTTTTGTGGTTAGAGTCACTGGACCAAGTAATACGCATCAACTTAATTGCATTGGTGTTGGTACTGTGTTTTATACTTTTCAGGTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAGGTGCAACTATCAAAATATTGCTACTACAAGTCCTCCAATTCATAGTTACTATTGACTGTCATTCTGAATATGATTTCCTTGATGTTTTTCAGAGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAGGTAAATAGGCTTGTTAAAGTTTGCTATCTTGTTATGGAGTATTACAGGAGTTTCTTCCCCTAATATTGCTCTTAGCTTCTCAATCTTAAGACAGTGATTTGGGATGGGTGTGTGTGGAAGGACTGAACAAGGTGTTAGTTTATCAATTAACTCGTTATCTAAAACCGAGATAAACTCCTTTTTTATAACCAAGATTTTCCAAGGGCTAGTTATGCATCATTCAAGCTCTGTGGATAATGGGCCCTTCCCTCTACCCTGGACTTAAATACCAGATTTTTATTTCCAGAACAATGTGTGGTTAACCCACAAATCATGTGCTTTCTATCAATAAACTGTTTTATAGATGGCATAACGGTGCATATCACTTCATAATTGGAACAGTGCATACCATATAACATTTGAATTTGGAACATCCAGATAATATCCAGACATATTCTCCATGGTTCTCATAAGTAATAGACTTCCTAATTGGTTTCTATTAATTAATAACATGCAGGAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAAC</genome_strand>
        <mrna_strand>ACTAAAGCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGGAATAATTCGTGAATGTGGAGG-AAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCTGGGAATCAGAGGCGCATCCAGTGTCTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACC..................................................................................................................................................GTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAG............................................................................................AGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251431" ref_strand="+" ref_description="SGN-E251431 [cLEG-9-I8]">
      <seq>gcactttcagtcaagtcagcaatccctcacccaagaataatgggaataattcgtgaatgtggaggaaaaatgcatatggcagagcggcagtgggcagaggcagctacggacttctttgaagctttcaagaactatgatgaagctgggaatcagaggcgcatccagtgtctaaagtacttggttctggcaaatatgctgatggagtctgaggttaacccttttgatggccaagaagcaaaaccgtacaaaaatgaccctgagatactggcaatgactaaccttatagcagcatatcaacgaaatgagatcttagagtttgagaaaattcttaagagtaatagaagaacaataatggatgatcccttcatcagaaattacattgaagatcttttaagaaatgtcagaacccaagtgctgctgaagatcattaagccttacacaagaatccggattcccttcatttccaaggagcttaatgtgccagaaaaagacgtcggggagttgttggtctcactcatcttggacaaccgtatcaatgggcacattgatcaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="104729" stop="102003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104429" g_stop="104257" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104256" i_stop="103419" i_length="838">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103418" g_stop="103350" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="242" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103349" i_stop="103204" i_length="146">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103203" g_stop="103113" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="333" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103112" i_stop="103021" i_length="92">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103020" g_stop="102886" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="468" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102885" i_stop="102390" i_length="496">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102389" g_stop="102303" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="555" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E251431" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104429" e_stop="104257"/>
          <exon e_start="103418" e_stop="103350"/>
          <exon e_start="103203" e_stop="103113"/>
          <exon e_start="103020" e_stop="102886"/>
          <exon e_start="102389" e_stop="102303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGGAATAATTCGTGAATGTGGAGGAAAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCTGGGAATCAGAGGCGCATCCAGTGTCTAAAGTATGTGAGCGGTTCATTGAGTTTGTTTTGTTTGCCTTCTTCCTTATTTTGGCATTTTCTTCTGGGGTAGAACAGATGGGAAGAGTACAGTTGGAAAGTAATAACATCTTGTACACTGCAAAAGTTACTAGATCAATCTACATGGTATTTTACTAAGTCTCATGTAGATGATATTTAAAAGAAAAATGTGTAAGGTCATCGCTGTTGCTGCTTAGACGCAGGCACTTGAATGCATTCTAAGTACAGCTTCATATGAGATTTCGTTGACATTTTCTGTTTGTGAAATAAGGTCTCAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAGCTTTTTAAGGAGTCCACCCATCTCATTAACCATCGATGTGGGACTTTTGTCATTCTTTAACACCCCACCATGCTTTGATACCATGTGAAATTAGGTCTTAGGCATAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAACCTTATAAGGAGTCCACCCATTTCATTAACCGCCAATGTGGGACTTTTTGTCATTCTTTAACATGTTAAATTAGATATTAGGCCTTACTGACACCCCAAAAGCTTAGCTCAATGGTGGAGCAGATTATGACTAAATCTGCCAACTCATTCAACACTGTTTAAGGGGGTGTGTCTCAGAATTTCTTAGCTGCATGTTAACATAATATTTATCTCTTTTCACTTTAGTTGTTAATGGTTCCTAGGCAATTCTCTTGCTGATTCACCTTCATTTCTCTCTCTTGCACGCCGCAGAAGAAACATTGGTCTGCCTGATATTGTGGTCACTTGGTTCCATCTTACAGGTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACCGTGAGCAGTTTAAGAGTTCTAATAATTTTCTTAATAAAGAGATTAGGACACGTACTCTTATCAGTTTTGTGGTTAGAGTCACTGGACCAAGTAATACGCATCAACTTAATTGCATTGGTGTTGGTACTGTGTTTTATACTTTTCAGGTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAGGTGCAACTATCAAAATATTGCTACTACAAGTCCTCCAATTCATAGTTACTATTGACTGTCATTCTGAATATGATTTCCTTGATGTTTTTCAGAGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAGGTAAATAGGCTTGTTAAAGTTTGCTATCTTGTTATGGAGTATTACAGGAGTTTCTTCCCCTAATATTGCTCTTAGCTTCTCAATCTTAAGACAGTGATTTGGGATGGGTGTGTGTGGAAGGACTGAACAAGGTGTTAGTTTATCAATTAACTCGTTATCTAAAACCGAGATAAACTCCTTTTTTATAACCAAGATTTTCCAAGGGCTAGTTATGCATCATTCAAGCTCTGTGGATAATGGGCCCTTCCCTCTACCCTGGACTTAAATACCAGATTTTTATTTCCAGAACAATGTGTGGTTAACCCACAAATCATGTGCTTTCTATCAATAAACTGTTTTATAGATGGCATAACGGTGCATATCACTTCATAATTGGAACAGTGCATACCATATAACATTTGAATTTGGAACATCCAGATAATATCCAGACATATTCTCCATGGTTCTCATAAGTAATAGACTTCCTAATTGGTTTCTATTAATTAATAACATGCAGGAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTG</genome_strand>
        <mrna_strand>GCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGGAATAATTCGTGAATGTGGAGGAAAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCTGGGAATCAGAGGCGCATCCAGTGTCTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACC..................................................................................................................................................GTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAG............................................................................................AGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358857" ref_strand="+" ref_description="SGN-E358857 [cLHT-24-P4]">
      <seq>tcattctttaacaccccaccctgctttgatatcatgtgaaattaggtcttaggcatgattcacaacccaaaaactaactcaaaggaaggaggattgcccaaaccttataaggagttcacccatctcattaaccgtcgatgtggactttttgtcattctgtaacatgtgaaactaggttttagacctaacttacaccccaaaagctagctcaatggtggagcagattatgtctacatctgccaactcattcaacacggttaaagggggtacttggttctggcaaatatgctgatggagtctgaggttaacccttttgatggccaagaagcaaaaccgtacaaaaatgaccctgagatactggcaatgactaaccttatagcagcatatcaacgaaatgagatcttagagtttgagaaaattcttaagagtaatagaagaacaataatggatgatcccttcattagaaattacattgaagatcttttaagaaatgtcagaacccaagtgctgctgaagatcattaaaccttacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="104161" stop="102613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103861" g_stop="103594" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103593" i_stop="103419" i_length="175">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103418" g_stop="103350" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="335" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103349" i_stop="103204" i_length="146">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103203" g_stop="103113" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="426" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103112" i_stop="103021" i_length="92">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103020" g_stop="102913" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="534" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E358857" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103861" e_stop="103594"/>
          <exon e_start="103418" e_stop="103350"/>
          <exon e_start="103203" e_stop="103113"/>
          <exon e_start="103020" e_stop="102913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTTTAACACCCCACCATGCTTTGATACCATGTGAAATTAGGTCTTAGGCATAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAACCTTATAAGGAGTCCACCCATTTCATTAACCGCCAATGTGGGACTTTTTGTCATTCTTTAACATGTTAAATTAGATATTAGGCCTTACTGACACCCCAAAAGCTTAGCTCAATGGTGGAGCAGATTATGACTAAATCTGCCAACTCATTCAACACTGTTTAAGGGGGTGTGTCTCAGAATTTCTTAGCTGCATGTTAACATAATATTTATCTCTTTTCACTTTAGTTGTTAATGGTTCCTAGGCAATTCTCTTGCTGATTCACCTTCATTTCTCTCTCTTGCACGCCGCAGAAGAAACATTGGTCTGCCTGATATTGTGGTCACTTGGTTCCATCTTACAGGTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACCGTGAGCAGTTTAAGAGTTCTAATAATTTTCTTAATAAAGAGATTAGGACACGTACTCTTATCAGTTTTGTGGTTAGAGTCACTGGACCAAGTAATACGCATCAACTTAATTGCATTGGTGTTGGTACTGTGTTTTATACTTTTCAGGTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAGGTGCAACTATCAAAATATTGCTACTACAAGTCCTCCAATTCATAGTTACTATTGACTGTCATTCTGAATATGATTTCCTTGATGTTTTTCAGAGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACA</genome_strand>
        <mrna_strand>TCATTCTTTAACACCCCACCCTGCTTTGATATCATGTGAAATTAGGTCTTAGGCATGATTCACAACCCAAAAACTAACTCAAAGGAAGGAGGATTGCCCAAACCTTATAAGGAGTTCACCCATCTCATTAACCGTCGATGT-GGACTTTTTGTCATTCTGTAACATGTGAAACTAGGTTTTAGACCTAACTTACACCCCAAAAGC-TAGCTCAATGGTGGAGCAGATTATGTCTACATCTGCCAACTCATTCAACACGGTTAAAGGGG...............................................................................................................................................................................GTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACC..................................................................................................................................................GTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAG............................................................................................AGTAATAGAAGAACAATAATGGATGATCCCTTCATTAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAACCTTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338060" ref_strand="+" ref_description="SGN-E338060 [cTOE-14-J22]">
      <seq>tcaagacaaatctaaaactttgcaaaatatggtttgacattggggagtatggacgaatgaataagattttgaaagaactccacaaatcttgtcaaaaagaagatggtactgatgaccagaagaaaggtacacaattgttggaggtatatgcaatagagatccaaatgtacacggagacaaaaaataacaaaaaactgaaggaactatacactaaagcactttcagtcaagtcagcaatccctcacccaagaataatgggaataattcgtgaatgtggaggaaaaatgcatatggcagagcggcagtgggcagaggcagctacggacttctttgaagctttcaagaactatgatgaagctgggaatcagaggcgcatccagtgtctaaagtacttggttctggcaaatatgctgatggagtctgaggttaacccttttgatggccaagaagcaaaaccgtacaaaaatgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="105732" stop="103043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105432" g_stop="105368" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105367" i_stop="105285" i_length="83">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.178" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105284" g_stop="105150" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="200" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105149" i_stop="104445" i_length="705">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104444" g_stop="104257" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="388" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104256" i_stop="103419" i_length="838">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103418" g_stop="103350" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="457" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103349" i_stop="103204" i_length="146">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103203" g_stop="103189" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="472" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E338060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105432" e_stop="105368"/>
          <exon e_start="105284" e_stop="105150"/>
          <exon e_start="104444" e_stop="104257"/>
          <exon e_start="103418" e_stop="103350"/>
          <exon e_start="103203" e_stop="103189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATGAATAAGGTATTATTCTTTTTCAGATTAGCATATGTTGTTGTAGTATCAATGTATAAGTTTTCCTACCAATAACTTGAGCGTTCAATTAGATTTTGAAAGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGACCAGAAGAAAGGTACACAATTGTTGGAGGTATATGCAATAGAGATCCAAATGTACACGGAGACAAAAAATAACAAAAAACTGAAGGTATGTTATTAGCTTTTCTCCTGTTTGTTTGATATCATACTGGGTTTTGTGCACCATTAGGTCAGGTCAATCTTTGCAGCTGATATGACCAAATAAATCATCTCTATTTTTAATGCCAGGTTCAGATGTTGTTTACCATTCCCAGTTACTCCCTAGTTCCATGTTTTACTTTTAAGTTACTCCCTTTTCTAAATCTTTTCCGACTACGAAACCTTAAGTTGTTAAACATAATCTTAGAAGGTAGTGAATGATCTGTGTCGAAAGTAAAAAAAAAGCTGATCAAACTTCCACAAAAGATGTGAGACTTCCAAGATTTATATAATTTTATATAGAGGGTAAGTATCATTATGTGTAGAGGGCTAATTAATACCCTAATATCCAAAGATGAACTCCCGCCTATAGTTCTATCCCATTAAAGCATCCGTGAACATGGAGTTCCAAGTCTTATTGGAGATTTTGATCTTCTCCCAGAAGCTTCAAGCTTATTTCTTTCCTTTTATCTTTTGGTATACCATTGTTCTTTATTTAGTCATTTTTTATTTTGATTCTGAATATGTCTTGAAGATCTGTTTGATCTAATTTATTCATTAAGAAGGATCCATAGATGCTGGAAAGACATACTTACATGTCCTTGAATTGGTGCTCTCTCCATCACTAATTGCTGCTTACTGAGATTCTTGAAAAAACCATGTATTTTATCTTCAGGAACTATACACTAAAGCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGGAATAATTCGTGAATGTGGAGGAAAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCTGGGAATCAGAGGCGCATCCAGTGTCTAAAGTATGTGAGCGGTTCATTGAGTTTGTTTTGTTTGCCTTCTTCCTTATTTTGGCATTTTCTTCTGGGGTAGAACAGATGGGAAGAGTACAGTTGGAAAGTAATAACATCTTGTACACTGCAAAAGTTACTAGATCAATCTACATGGTATTTTACTAAGTCTCATGTAGATGATATTTAAAAGAAAAATGTGTAAGGTCATCGCTGTTGCTGCTTAGACGCAGGCACTTGAATGCATTCTAAGTACAGCTTCATATGAGATTTCGTTGACATTTTCTGTTTGTGAAATAAGGTCTCAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAGCTTTTTAAGGAGTCCACCCATCTCATTAACCATCGATGTGGGACTTTTGTCATTCTTTAACACCCCACCATGCTTTGATACCATGTGAAATTAGGTCTTAGGCATAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAACCTTATAAGGAGTCCACCCATTTCATTAACCGCCAATGTGGGACTTTTTGTCATTCTTTAACATGTTAAATTAGATATTAGGCCTTACTGACACCCCAAAAGCTTAGCTCAATGGTGGAGCAGATTATGACTAAATCTGCCAACTCATTCAACACTGTTTAAGGGGGTGTGTCTCAGAATTTCTTAGCTGCATGTTAACATAATATTTATCTCTTTTCACTTTAGTTGTTAATGGTTCCTAGGCAATTCTCTTGCTGATTCACCTTCATTTCTCTCTCTTGCACGCCGCAGAAGAAACATTGGTCTGCCTGATATTGTGGTCACTTGGTTCCATCTTACAGGTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACCGTGAGCAGTTTAAGAGTTCTAATAATTTTCTTAATAAAGAGATTAGGACACGTACTCTTATCAGTTTTGTGGTTAGAGTCACTGGACCAAGTAATACGCATCAACTTAATTGCATTGGTGTTGGTACTGTGTTTTATACTTTTCAGGTACAAAAATGACCC</genome_strand>
        <mrna_strand>TCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATGAATAAG...................................................................................ATTTTGAAAGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGACCAGAAGAAAGGTACACAATTGTTGGAGGTATATGCAATAGAGATCCAAATGTACACGGAGACAAAAAATAACAAAAAACTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTATACACTAAAGCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGGAATAATTCGTGAATGTGGAGGAAAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCTGGGAATCAGAGGCGCATCCAGTGTCTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACC..................................................................................................................................................GTACAAAAATGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467839" ref_strand="+" ref_description="SGN-E467839 [cSTB-1-H24]">
      <seq>aaactgttaagctttactataagctagggaagttcaaggaaatgatggattcttatagagaaatgcttacctacataaaatcagcagtgacacggaactatagtgagaagtgtataaacggtatcatggattttgtttctggatcagctagtcagaacttcagccttttgcaagagttctaccagacaacattgaaagcccttgaagaggctaagaatgagaggttgtggttcaagacgaatctaaagctttgcaagatttggtttgatatgggggaatatggacgaatgaacaagattctgaaagagctccacaaatcttgtaaaaaagaagatggcactgatgatgagaagaaagggacacaattgttggaggtatatgcaattgagattcaaatgtacacagagacaaaaaacaacaaaaaactgaaggaactgtacaacaaagcactttcagtcaagtcagcaattcctcatccaagaataatgggaatcattcgtgaatgcggaggtaaaatgcatatggcagagaggaagtgggcagaggcagctacagacttctttgaagctttcaagaactatgatgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="106063" stop="103986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105763" g_stop="105543" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105542" i_stop="105443" i_length="100">
            <donor d_prob="0.712" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105442" g_stop="105368" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="296" r_length="75" r_score="0.893"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105367" i_stop="105285" i_length="83">
            <donor d_prob="0.987" d_score="0.86"/>
            <acceptor a_prob="0.178" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105284" g_stop="105150" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="431" r_length="135" r_score="0.919"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105149" i_stop="104445" i_length="705">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104444" g_stop="104286" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="590" r_length="159" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E467839" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105763" e_stop="105543"/>
          <exon e_start="105442" e_stop="105368"/>
          <exon e_start="105284" e_stop="105150"/>
          <exon e_start="104444" e_stop="104286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAGGTCAGAACAATATTCCTTCTTGAGGGTATAGTAGGCTGGCTTTGAAGGTTCTAGAGTTCATGTTCTTGTCAAGGGCCTCATGGTCACCTTCTTTTCACAGAGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATGAATAAGGTATTATTCTTTTTCAGATTAGCATATGTTGTTGTAGTATCAATGTATAAGTTTTCCTACCAATAACTTGAGCGTTCAATTAGATTTTGAAAGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGACCAGAAGAAAGGTACACAATTGTTGGAGGTATATGCAATAGAGATCCAAATGTACACGGAGACAAAAAATAACAAAAAACTGAAGGTATGTTATTAGCTTTTCTCCTGTTTGTTTGATATCATACTGGGTTTTGTGCACCATTAGGTCAGGTCAATCTTTGCAGCTGATATGACCAAATAAATCATCTCTATTTTTAATGCCAGGTTCAGATGTTGTTTACCATTCCCAGTTACTCCCTAGTTCCATGTTTTACTTTTAAGTTACTCCCTTTTCTAAATCTTTTCCGACTACGAAACCTTAAGTTGTTAAACATAATCTTAGAAGGTAGTGAATGATCTGTGTCGAAAGTAAAAAAAAAGCTGATCAAACTTCCACAAAAGATGTGAGACTTCCAAGATTTATATAATTTTATATAGAGGGTAAGTATCATTATGTGTAGAGGGCTAATTAATACCCTAATATCCAAAGATGAACTCCCGCCTATAGTTCTATCCCATTAAAGCATCCGTGAACATGGAGTTCCAAGTCTTATTGGAGATTTTGATCTTCTCCCAGAAGCTTCAAGCTTATTTCTTTCCTTTTATCTTTTGGTATACCATTGTTCTTTATTTAGTCATTTTTTATTTTGATTCTGAATATGTCTTGAAGATCTGTTTGATCTAATTTATTCATTAAGAAGGATCCATAGATGCTGGAAAGACATACTTACATGTCCTTGAATTGGTGCTCTCTCCATCACTAATTGCTGCTTACTGAGATTCTTGAAAAAACCATGTATTTTATCTTCAGGAACTATACACTAAAGCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGGAATAATTCGTGAATGTGGAGGAAAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCT</genome_strand>
        <mrna_strand>AAACTGTTAAGCTTTACTATAAGCTAGGGAAGTTCAAGGAAATGATGGATTCTTATAGAGAAATGCTTACCTACATAAAATCAGCAGTGACACGGAACTATAGTGAGAAGTGTATAAACGGTATCATGGATTTTGTTTCTGGATCAGCTAGTCAGAACTTCAGCCTTTTGCAAGAGTTCTACCAGACAACATTGAAAGCCCTTGAAGAGGCTAAGAATGAG....................................................................................................AGGTTGTGGTTCAAGACGAATCTAAAGCTTTGCAAGATTTGGTTTGATATGGGGGAATATGGACGAATGAACAAG...................................................................................ATTCTGAAAGAGCTCCACAAATCTTGTAAAAAAGAAGATGGCACTGATGATGAGAAGAAAGGGACACAATTGTTGGAGGTATATGCAATTGAGATTCAAATGTACACAGAGACAAAAAACAACAAAAAACTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGTACAACAAAGCACTTTCAGTCAAGTCAGCAATTCCTCATCCAAGAATAATGGGAATCATTCGTGAATGCGGAGGTAAAATGCATATGGCAGAGAGGAAGTGGGCAGAGGCAGCTACAGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327436" ref_strand="+" ref_description="SGN-E327436 [cTOC-19-D5]">
      <seq>ctctcttcacttcatccacagctcaaaaatctcctccattaatcttcgttttcgagtcttctctaatcagccatgggctctgatatggaggactatggattcgagtattcagaggaggaacctgaagagcaggatgttgatattgagaaccaatactacaactccaaaggcttggctgaaacagacccagaggcagcacttgagggttttgctgaagtagttcgtatggaacctgagaaggctgattggggatttaaagccttaaagcaaactgttaagctttactataagctagggaagtacaagggaatgatggacgcttacagagaaatgctaacctacatcaagtcagctgtgacaagaaattatagtgaaaagtgtataaacaatatcatggatttcgtctcaggatcagctagtcagaactttgatctcctacaagagttctaccaaacaacattgaaagcccttgaagaggcaaaaaacgagaggttgtggttcaagacaaatctaaaactttgcaaaatatggtttgacattggggagtatggacgaatgaataagattttgaaagaactccacaaatcttgtcaaaaagaagatggtactgatgaccagaagaaaggtacacaattggttggaggtatatgcaatagagatccaaatgtacacggagacaaaaaataacaaaaaactgaaggaactatacactaaagcactttcagtcaagtcagcaatccctcacccaagaataatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="109465" stop="104086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109165" g_stop="109084" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109083" i_stop="108985" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108984" g_stop="108898" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="169" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108897" i_stop="106762" i_length="2136">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106761" g_stop="106683" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="248" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106682" i_stop="105784" i_length="899">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105783" g_stop="105543" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="489" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105542" i_stop="105443" i_length="100">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105442" g_stop="105368" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="564" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105367" i_stop="105285" i_length="83">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.178" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105284" g_stop="105150" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="700" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="105149" i_stop="104445" i_length="705">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="104444" g_stop="104386" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="759" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E327436" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109165" e_stop="109084"/>
          <exon e_start="108984" e_stop="108898"/>
          <exon e_start="106761" e_stop="106683"/>
          <exon e_start="105783" e_stop="105543"/>
          <exon e_start="105442" e_stop="105368"/>
          <exon e_start="105284" e_stop="105150"/>
          <exon e_start="104444" e_stop="104386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCACTTCATCCACAGCTCAAAAATCTCCTCCATTAATCTTCGTTTTCGAGTCTTCTCTAATCAGCCATGGGCTCTGGTAATTTACTCTTTCTAACTAGCTATTTTTTTTGTGTTAATCTGATTTTGTGAATGTTAATGTAAGTGTATTTTCAAATTTTTTTGTTTGAAGATGCAGATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAGGTTTTCAAATTTTGAATGTTGTAATTATGCTGATAAATTTTATGCTTTTGTTTTGATTTTACTTCCTCTACTTGGATTACAAAAAAATCAGCTGCGTTAGTTACTTCTCTTCGGAAAAAACTTTTGCGAACAAACTAAATTTGCATTAAAATTTTCACACATTAACCTGAGGAAAACAATTAAGGTATTGAATATGCATCATGTATGTGAATGTTTATAGTTTAGTATGTGTTAATTTAAGTTTGATTACTATGTTAGATGTTATTTTGATTGTTTCAGTTGGGAAACAGTAAAGAGGTCTTTGTTTGTTAACTTGGCTAATTTGTTAGATTATAGAGGAAAGTACTTTAAGGAAGATCTGTTAAGAAAGAGCAGTTGTTGCTTGAGAAAATTGGGAGGACTTGAAATTGGAAATTACTAAGAAAGGTGATTAAGTCAATATTTTCTTTTGATTTGAATTAGGGAAAAACTTAATACTAAATTGTTAAAGAGAATAATATAATTTGGATTGTTAAATTTAGAGTTTTGTATTTCGAACATAATGCTCCAACTTCCTTCTTTTTGTTTTTGGGATAACCGTTGGCTCATGGTTCTCAACACACTTCATTGATCACTTTGGGTCTTGGCCACACTTTTGGGAGAGCACCAAATTGCTTATTATCATTTCCAAGGTGACAGAACAAAATATTGTGGTCTGCTACAAGACGAGCAATCGCGGTGACTCTGCATTGTTGAGTTTACCTGTAAACTGTATTAACAGAGGTGAATATTGGGTTGAAATTTAAGGAACGCATTGATCCCTTCTTTTTCGTGAAAGCGTAACACCCTTAAAGGGGCATTTGATTTGGTCAATCTATTATGTCTGGATTCTGAAATAAGGTAGTTATCGGCTGCATGATATGGCTTCAAATTCAATGTTTTTTCTGCACTTTTAGGAGTGAAACCTGGACATATAGAGGAGAAATCTAGGCCGCTAATTATGTTCATTTGTAAAAGGAACTTCAAGGAGTAGGAAAGAAGGCATATTAGCTCAGTATATTTTAGACATTGCAGGGTCCTTATAGTTAATTTTCTTCTTTTAACTTTCTTTTGATGGTTTGTTTTAATCACCTGTATCATTGAGTTACGTATGGGAGTAGTGCTTTAATTTATAGGACATAAGTTTGGGAAGTTAATTATCAAAGAGAAAAGGCAAGTCTGCTCTTTGTCCTCTGGAATTTTATCCCTCGTGATTTTGTTCTCAGGGAAAGGCTTCCATAGATTTATTTAGTGTTGGAAGGTTGGAAAAGGAGAATCCATCCCTTATCCTATATAAGTTCTAGGATTGTAATGGTTGAATTTTGTCACAGCAAGGTTAGGGAAAGCCATAATTTTATCTATTAGAGTCAAGTCGGTCATAAGGTTGTCTATTAGAGCCAAGTCGGTCATAAGGTTGTCTATTAGAGCCAAGTTGGTTTACAGTTGCCATGATTTTCTATTTTCTTTGGTTCTAAACAATGTTAGAGAAAGTGAAGATTGTAGCAGTGATGTTTCTCTCACTTGACTCCCCTGTCTTTTTCTGTGGAGACGCCTATGAAGTGTGATGCTCTATGTGAAACAGATCTTTTGTATAATACAATTATTTCCCAATGATTTTGTATGAATGTGATGACAGTTGCGAGGGAAGAACTTGCAAACGTAGAAGTTACCCAGATATTAAATAATCTGAAAAAGCAAACTGTACCAGTAGCAGCAACAGATACTCCTGTAAAGAAATCCTTGGTTGTAAGGGAGTAACAGATTATGCTATGTGCTATGTAATGGTGTTGATTTTATCTACCGAGTTCCAAACCGTGCAACAGCTGATCCTTGGGAATTTCTCAGTTGTCAAAACAATAGTACTCCCTGGATATAAGATAGTTATAAGTCATGTGATATCCTATGTAATGGCATTGACTTTATCTACTGAGCTTCGAATTGCAGCTGCTTCTCGGGAATTTCTTTGTTATAAAAAAAAGGGTGTTGACTTTAACACAACTATGTGGATAATCTATATATGCATCTTAAACTACTTATCTTGGACTAATATCTCTTATCTTTTTTTCCTCTCTTTGGACATGTTTTCCTACTAATATTCCGTGATTATGTCATTCATAGGCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTGGTAAGAAATTGAAAGTAATAAAAATTTGTGCAGTATGGTAGTTGTTAAACTGATCAGCTAACTCCCTTTGTGTTTGTTTTATAAAGAGAATAGATGGCTGTGTATTTGTGAGATTTGTGAGGCCAGAGACTGATGTGATGGATATGTCCATACGAAGTTCAGGGTCATTAAGAACTGCATGTTCTCATTGCAGTTAATTTTATGTCTCAAGTAAACTACTACAACCTTGTATTAATTGACATGCAATTACAGCCTAAGAAACAAGCTGATGATGAATTATGAGAAACTGCAAGTTGAGATAGATTGTATTTTCTTCATTATGTAAATGCTTGTATGGGCATGTGGGAGAAGATCCTGATAGTTTATTTAACTTTTATCATTCTTACAAGCCTGTGGAGAAAAATGTTGACCTTCCAAGTGCAGATAATTGTTTGACAAGAACTGGAAATATTTTTCAGATTTCTCCCTTTGGGTCTCTTGCTCCTATTTGGTTTACATGTGTGAAATTTAAAAAATTTCAGAAACTTTTGCTCTGAGCACTTAGGTTGAGACCTCTAGTTCATTGTCAGATCTGATATGTTTGGTTTTTTTTTTTTCGCTTTTTATGTTGTTTCGTGAATTTGGTAACTTGATATTAATCACTGAGAATACTTGTGCACACGTTATAATTGTAATCCAAAAGGCGTCTTACTATTTCCCAAATTTGCTTCTTGTTCATGTGATTTGATGCTTCTTAGAAAACTTCGTAATTGTATTGCTAAAAGTTGTGGTGCTATTTTACACCTTTGCTTCTTCTTTTATGTAATTTGATGCTTTGTAAGTAAAGGTCTCTTGCAAGTTTTAAAATTCTCTGAAATACGCTGTCTGTGGCACTTACCAACTGTTCTTATTGTTTTTAGGGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAGGTCAGAACAATATTCCTTCTTGAGGGTATAGTAGGCTGGCTTTGAAGGTTCTAGAGTTCATGTTCTTGTCAAGGGCCTCATGGTCACCTTCTTTTCACAGAGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATGAATAAGGTATTATTCTTTTTCAGATTAGCATATGTTGTTGTAGTATCAATGTATAAGTTTTCCTACCAATAACTTGAGCGTTCAATTAGATTTTGAAAGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGACCAGAAGAAAGGTACACAATT-GTTGGAGGTATATGCAATAGAGATCCAAATGTACACGGAGACAAAAAATAACAAAAAACTGAAGGTATGTTATTAGCTTTTCTCCTGTTTGTTTGATATCATACTGGGTTTTGTGCACCATTAGGTCAGGTCAATCTTTGCAGCTGATATGACCAAATAAATCATCTCTATTTTTAATGCCAGGTTCAGATGTTGTTTACCATTCCCAGTTACTCCCTAGTTCCATGTTTTACTTTTAAGTTACTCCCTTTTCTAAATCTTTTCCGACTACGAAACCTTAAGTTGTTAAACATAATCTTAGAAGGTAGTGAATGATCTGTGTCGAAAGTAAAAAAAAAGCTGATCAAACTTCCACAAAAGATGTGAGACTTCCAAGATTTATATAATTTTATATAGAGGGTAAGTATCATTATGTGTAGAGGGCTAATTAATACCCTAATATCCAAAGATGAACTCCCGCCTATAGTTCTATCCCATTAAAGCATCCGTGAACATGGAGTTCCAAGTCTTATTGGAGATTTTGATCTTCTCCCAGAAGCTTCAAGCTTATTTCTTTCCTTTTATCTTTTGGTATACCATTGTTCTTTATTTAGTCATTTTTTATTTTGATTCTGAATATGTCTTGAAGATCTGTTTGATCTAATTTATTCATTAAGAAGGATCCATAGATGCTGGAAAGACATACTTACATGTCCTTGAATTGGTGCTCTCTCCATCACTAATTGCTGCTTACTGAGATTCTTGAAAAAACCATGTATTTTATCTTCAGGAACTATACACTAAAGCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGG</genome_strand>
        <mrna_strand>CTCTCTTCACTTCATCCACAGCTCAAAAATCTCCTCCATTAATCTTCGTTTTCGAGTCTTCTCTAATCAGCCATGGGCTCTG...................................................................................................ATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAG....................................................................................................AGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATGAATAAG...................................................................................ATTTTGAAAGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGACCAGAAGAAAGGTACACAATTGGTTGGAGGTATATGCAATAGAGATCCAAATGTACACGGAGACAAAAAATAACAAAAAACTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTATACACTAAAGCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269720" ref_strand="+" ref_description="SGN-E269720 [cLEM-17-B13]">
      <seq>tcaggatcagctagtcagaactttgatctcctacaagagttctaccaaacaacattgaaagcccttgaagaggcaaaaaacgagaggttgtggttcaagacaaatctaaaactttgcaaaatatggtttgacattggggagtatggacgaatgaataagattttgaaagaactccacaaatcttgtcaaaaagaagatggtactgatgaccagaagaaaagtacacaattgttggaggtatatgcaatagagatccaaatgtacacggagacaaaaaataacaaaaaactgaaggaactatacactaaagcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="105926" stop="104124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105626" g_stop="105543" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105542" i_stop="105443" i_length="100">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105442" g_stop="105368" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="159" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105367" i_stop="105285" i_length="83">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.178" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105284" g_stop="105150" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="294" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105149" i_stop="104445" i_length="705">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104444" g_stop="104424" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="315" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E269720" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105626" e_stop="105543"/>
          <exon e_start="105442" e_stop="105368"/>
          <exon e_start="105284" e_stop="105150"/>
          <exon e_start="104444" e_stop="104424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAGGTCAGAACAATATTCCTTCTTGAGGGTATAGTAGGCTGGCTTTGAAGGTTCTAGAGTTCATGTTCTTGTCAAGGGCCTCATGGTCACCTTCTTTTCACAGAGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATGAATAAGGTATTATTCTTTTTCAGATTAGCATATGTTGTTGTAGTATCAATGTATAAGTTTTCCTACCAATAACTTGAGCGTTCAATTAGATTTTGAAAGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGACCAGAAGAAAGGTACACAATTGTTGGAGGTATATGCAATAGAGATCCAAATGTACACGGAGACAAAAAATAACAAAAAACTGAAGGTATGTTATTAGCTTTTCTCCTGTTTGTTTGATATCATACTGGGTTTTGTGCACCATTAGGTCAGGTCAATCTTTGCAGCTGATATGACCAAATAAATCATCTCTATTTTTAATGCCAGGTTCAGATGTTGTTTACCATTCCCAGTTACTCCCTAGTTCCATGTTTTACTTTTAAGTTACTCCCTTTTCTAAATCTTTTCCGACTACGAAACCTTAAGTTGTTAAACATAATCTTAGAAGGTAGTGAATGATCTGTGTCGAAAGTAAAAAAAAAGCTGATCAAACTTCCACAAAAGATGTGAGACTTCCAAGATTTATATAATTTTATATAGAGGGTAAGTATCATTATGTGTAGAGGGCTAATTAATACCCTAATATCCAAAGATGAACTCCCGCCTATAGTTCTATCCCATTAAAGCATCCGTGAACATGGAGTTCCAAGTCTTATTGGAGATTTTGATCTTCTCCCAGAAGCTTCAAGCTTATTTCTTTCCTTTTATCTTTTGGTATACCATTGTTCTTTATTTAGTCATTTTTTATTTTGATTCTGAATATGTCTTGAAGATCTGTTTGATCTAATTTATTCATTAAGAAGGATCCATAGATGCTGGAAAGACATACTTACATGTCCTTGAATTGGTGCTCTCTCCATCACTAATTGCTGCTTACTGAGATTCTTGAAAAAACCATGTATTTTATCTTCAGGAACTATACACTAAAGCACTT</genome_strand>
        <mrna_strand>TCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAG....................................................................................................AGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATGAATAAG...................................................................................ATTTTGAAAGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGACCAGAAGAAAAGTACACAATTGTTGGAGGTATATGCAATAGAGATCCAAATGTACACGGAGACAAAAAATAACAAAAAACTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTATACACTAAAGCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267663" ref_strand="+" ref_description="SGN-E267663 [cLEI-12-G13]">
      <seq>ggcagcacttgagggttttgctgaactagatggtatggaacctgagaaggctgattggggatttaaagccttaaaacaaactgttaatctttactataagctagggaagtacaagggaatgatggacgcttacagagaaatgctaacctacatcaagtcagctgtgacaagaaattatagtgaaaagtgtataaacaatatcatggatttcgtctcaggatcagctagtcagaactttgatctcctacaagagttctaccaaacaacattgaaagcccttgaagaggcaaaaaacgagaggttgtggttcaagacaaatctaaaactttgcaaaatatggtttgacattggggagtatggacgaatgaataagattttgaaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="107039" stop="105063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106739" g_stop="106683" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106682" i_stop="105784" i_length="899">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105783" g_stop="105543" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="298" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105542" i_stop="105443" i_length="100">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105442" g_stop="105368" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="373" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105367" i_stop="105285" i_length="83">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.178" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105284" g_stop="105272" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="386" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E267663" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106739" e_stop="106683"/>
          <exon e_start="105783" e_stop="105543"/>
          <exon e_start="105442" e_stop="105368"/>
          <exon e_start="105284" e_stop="105272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTGGTAAGAAATTGAAAGTAATAAAAATTTGTGCAGTATGGTAGTTGTTAAACTGATCAGCTAACTCCCTTTGTGTTTGTTTTATAAAGAGAATAGATGGCTGTGTATTTGTGAGATTTGTGAGGCCAGAGACTGATGTGATGGATATGTCCATACGAAGTTCAGGGTCATTAAGAACTGCATGTTCTCATTGCAGTTAATTTTATGTCTCAAGTAAACTACTACAACCTTGTATTAATTGACATGCAATTACAGCCTAAGAAACAAGCTGATGATGAATTATGAGAAACTGCAAGTTGAGATAGATTGTATTTTCTTCATTATGTAAATGCTTGTATGGGCATGTGGGAGAAGATCCTGATAGTTTATTTAACTTTTATCATTCTTACAAGCCTGTGGAGAAAAATGTTGACCTTCCAAGTGCAGATAATTGTTTGACAAGAACTGGAAATATTTTTCAGATTTCTCCCTTTGGGTCTCTTGCTCCTATTTGGTTTACATGTGTGAAATTTAAAAAATTTCAGAAACTTTTGCTCTGAGCACTTAGGTTGAGACCTCTAGTTCATTGTCAGATCTGATATGTTTGGTTTTTTTTTTTTCGCTTTTTATGTTGTTTCGTGAATTTGGTAACTTGATATTAATCACTGAGAATACTTGTGCACACGTTATAATTGTAATCCAAAAGGCGTCTTACTATTTCCCAAATTTGCTTCTTGTTCATGTGATTTGATGCTTCTTAGAAAACTTCGTAATTGTATTGCTAAAAGTTGTGGTGCTATTTTACACCTTTGCTTCTTCTTTTATGTAATTTGATGCTTTGTAAGTAAAGGTCTCTTGCAAGTTTTAAAATTCTCTGAAATACGCTGTCTGTGGCACTTACCAACTGTTCTTATTGTTTTTAGGGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAGGTCAGAACAATATTCCTTCTTGAGGGTATAGTAGGCTGGCTTTGAAGGTTCTAGAGTTCATGTTCTTGTCAAGGGCCTCATGGTCACCTTCTTTTCACAGAGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATGAATAAGGTATTATTCTTTTTCAGATTAGCATATGTTGTTGTAGTATCAATGTATAAGTTTTCCTACCAATAACTTGAGCGTTCAATTAGATTTTGAAAGAAC</genome_strand>
        <mrna_strand>GGCAGCACTTGAGGGTTTTGCTGAACTAGATGGTATGGAACCTGAGAAGGCTGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTAAAGCCTTAAAACAAACTGTTAATCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAG....................................................................................................AGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATGAATAAG...................................................................................ATTTTGAAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301261" ref_strand="+" ref_description="SGN-E301261 [cLEW-24-D19]">
      <seq>cttcatccacagctcaaaaatctcctccattaatcttcgttttcgagtcttctctaatcagccatgggctctgatgcagatatggaggactatggattcgagtattcagaggaggaacctgaagagcaggatgttgatattgagaaccaatactacaactccaaaggcttggctgaaacagacccagaggcagcacttgagggttttgctgaagtagttcgtatggaacctgagaaggctgattggggatttaaagccttaaagcaaactgttaagctttactataagctagggaagtacaagggaatgatggacgcttacagagaaatgctaacctacatcaagtcagctgtgacaagaaattatagtgaaaagtgtataaacaatatcatggatttcgtctcaagatcagctagtcagaactttgatctcctacaagagttctaccaaacaacattgaaagcccttgaagaggcaaaaaacgagaggttgtggttcaagacaaatctaaaactttgcaaaatatggtttgacattggggagtatggacgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="109456" stop="105074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109156" g_stop="109084" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109083" i_stop="108991" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108990" g_stop="108898" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="166" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108897" i_stop="106762" i_length="2136">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106761" g_stop="106683" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="245" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106682" i_stop="105784" i_length="899">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105783" g_stop="105543" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="486" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105542" i_stop="105443" i_length="100">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105442" g_stop="105374" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="555" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E301261" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109156" e_stop="109084"/>
          <exon e_start="108990" e_stop="108898"/>
          <exon e_start="106761" e_stop="106683"/>
          <exon e_start="105783" e_stop="105543"/>
          <exon e_start="105442" e_stop="105374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCCACAGCTCAAAAATCTCCTCCATTAATCTTCGTTTTCGAGTCTTCTCTAATCAGCCATGGGCTCTGGTAATTTACTCTTTCTAACTAGCTATTTTTTTTGTGTTAATCTGATTTTGTGAATGTTAATGTAAGTGTATTTTCAAATTTTTTTGTTTGAAGATGCAGATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAGGTTTTCAAATTTTGAATGTTGTAATTATGCTGATAAATTTTATGCTTTTGTTTTGATTTTACTTCCTCTACTTGGATTACAAAAAAATCAGCTGCGTTAGTTACTTCTCTTCGGAAAAAACTTTTGCGAACAAACTAAATTTGCATTAAAATTTTCACACATTAACCTGAGGAAAACAATTAAGGTATTGAATATGCATCATGTATGTGAATGTTTATAGTTTAGTATGTGTTAATTTAAGTTTGATTACTATGTTAGATGTTATTTTGATTGTTTCAGTTGGGAAACAGTAAAGAGGTCTTTGTTTGTTAACTTGGCTAATTTGTTAGATTATAGAGGAAAGTACTTTAAGGAAGATCTGTTAAGAAAGAGCAGTTGTTGCTTGAGAAAATTGGGAGGACTTGAAATTGGAAATTACTAAGAAAGGTGATTAAGTCAATATTTTCTTTTGATTTGAATTAGGGAAAAACTTAATACTAAATTGTTAAAGAGAATAATATAATTTGGATTGTTAAATTTAGAGTTTTGTATTTCGAACATAATGCTCCAACTTCCTTCTTTTTGTTTTTGGGATAACCGTTGGCTCATGGTTCTCAACACACTTCATTGATCACTTTGGGTCTTGGCCACACTTTTGGGAGAGCACCAAATTGCTTATTATCATTTCCAAGGTGACAGAACAAAATATTGTGGTCTGCTACAAGACGAGCAATCGCGGTGACTCTGCATTGTTGAGTTTACCTGTAAACTGTATTAACAGAGGTGAATATTGGGTTGAAATTTAAGGAACGCATTGATCCCTTCTTTTTCGTGAAAGCGTAACACCCTTAAAGGGGCATTTGATTTGGTCAATCTATTATGTCTGGATTCTGAAATAAGGTAGTTATCGGCTGCATGATATGGCTTCAAATTCAATGTTTTTTCTGCACTTTTAGGAGTGAAACCTGGACATATAGAGGAGAAATCTAGGCCGCTAATTATGTTCATTTGTAAAAGGAACTTCAAGGAGTAGGAAAGAAGGCATATTAGCTCAGTATATTTTAGACATTGCAGGGTCCTTATAGTTAATTTTCTTCTTTTAACTTTCTTTTGATGGTTTGTTTTAATCACCTGTATCATTGAGTTACGTATGGGAGTAGTGCTTTAATTTATAGGACATAAGTTTGGGAAGTTAATTATCAAAGAGAAAAGGCAAGTCTGCTCTTTGTCCTCTGGAATTTTATCCCTCGTGATTTTGTTCTCAGGGAAAGGCTTCCATAGATTTATTTAGTGTTGGAAGGTTGGAAAAGGAGAATCCATCCCTTATCCTATATAAGTTCTAGGATTGTAATGGTTGAATTTTGTCACAGCAAGGTTAGGGAAAGCCATAATTTTATCTATTAGAGTCAAGTCGGTCATAAGGTTGTCTATTAGAGCCAAGTCGGTCATAAGGTTGTCTATTAGAGCCAAGTTGGTTTACAGTTGCCATGATTTTCTATTTTCTTTGGTTCTAAACAATGTTAGAGAAAGTGAAGATTGTAGCAGTGATGTTTCTCTCACTTGACTCCCCTGTCTTTTTCTGTGGAGACGCCTATGAAGTGTGATGCTCTATGTGAAACAGATCTTTTGTATAATACAATTATTTCCCAATGATTTTGTATGAATGTGATGACAGTTGCGAGGGAAGAACTTGCAAACGTAGAAGTTACCCAGATATTAAATAATCTGAAAAAGCAAACTGTACCAGTAGCAGCAACAGATACTCCTGTAAAGAAATCCTTGGTTGTAAGGGAGTAACAGATTATGCTATGTGCTATGTAATGGTGTTGATTTTATCTACCGAGTTCCAAACCGTGCAACAGCTGATCCTTGGGAATTTCTCAGTTGTCAAAACAATAGTACTCCCTGGATATAAGATAGTTATAAGTCATGTGATATCCTATGTAATGGCATTGACTTTATCTACTGAGCTTCGAATTGCAGCTGCTTCTCGGGAATTTCTTTGTTATAAAAAAAAGGGTGTTGACTTTAACACAACTATGTGGATAATCTATATATGCATCTTAAACTACTTATCTTGGACTAATATCTCTTATCTTTTTTTCCTCTCTTTGGACATGTTTTCCTACTAATATTCCGTGATTATGTCATTCATAGGCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTGGTAAGAAATTGAAAGTAATAAAAATTTGTGCAGTATGGTAGTTGTTAAACTGATCAGCTAACTCCCTTTGTGTTTGTTTTATAAAGAGAATAGATGGCTGTGTATTTGTGAGATTTGTGAGGCCAGAGACTGATGTGATGGATATGTCCATACGAAGTTCAGGGTCATTAAGAACTGCATGTTCTCATTGCAGTTAATTTTATGTCTCAAGTAAACTACTACAACCTTGTATTAATTGACATGCAATTACAGCCTAAGAAACAAGCTGATGATGAATTATGAGAAACTGCAAGTTGAGATAGATTGTATTTTCTTCATTATGTAAATGCTTGTATGGGCATGTGGGAGAAGATCCTGATAGTTTATTTAACTTTTATCATTCTTACAAGCCTGTGGAGAAAAATGTTGACCTTCCAAGTGCAGATAATTGTTTGACAAGAACTGGAAATATTTTTCAGATTTCTCCCTTTGGGTCTCTTGCTCCTATTTGGTTTACATGTGTGAAATTTAAAAAATTTCAGAAACTTTTGCTCTGAGCACTTAGGTTGAGACCTCTAGTTCATTGTCAGATCTGATATGTTTGGTTTTTTTTTTTTCGCTTTTTATGTTGTTTCGTGAATTTGGTAACTTGATATTAATCACTGAGAATACTTGTGCACACGTTATAATTGTAATCCAAAAGGCGTCTTACTATTTCCCAAATTTGCTTCTTGTTCATGTGATTTGATGCTTCTTAGAAAACTTCGTAATTGTATTGCTAAAAGTTGTGGTGCTATTTTACACCTTTGCTTCTTCTTTTATGTAATTTGATGCTTTGTAAGTAAAGGTCTCTTGCAAGTTTTAAAATTCTCTGAAATACGCTGTCTGTGGCACTTACCAACTGTTCTTATTGTTTTTAGGGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAGGTCAGAACAATATTCCTTCTTGAGGGTATAGTAGGCTGGCTTTGAAGGTTCTAGAGTTCATGTTCTTGTCAAGGGCCTCATGGTCACCTTCTTTTCACAGAGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATG</genome_strand>
        <mrna_strand>CTTCATCCACAGCTCAAAAATCTCCTCCATTAATCTTCGTTTTCGAGTCTTCTCTAATCAGCCATGGGCTCTG.............................................................................................ATGCAGATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAAGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAG....................................................................................................AGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438278" ref_strand="+" ref_description="SGN-E438278 [cSTA-7-E20]">
      <seq>ctcaaaaatctctccattaaatcttttcagtcttctctaatcagccatgggctctgatgcagatatggaggactatggattcgagtattcggaggaggagcctgaagagcaggatgttgatattgagaaccaatactacaactccaaaggcttggctgaaacacacccagaggcagcacttgagggatttgctgaagtagttcatatggaacctgagaaggctgattggggatttaaagccttgaagcaaactgttaagctttactataagctagggaagtacaaggaaatgatggatgcttacagagaaatgctaacctacatcaagtcagcagtgacaagaaattatagcgaaaagtgtataaacaatatcatggatttcgtctcaggatcagctagtcagaactttgatctcctacaagagttctaccagacaacattgaaagcccttgaagaggcaaaaaacgagaggttgtggttcaagacaaatctaaaactttgcaaaatatggtttgacatttgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="109420" stop="105086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109144" g_stop="109084" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109083" i_stop="108991" i_length="93">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108990" g_stop="108898" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="149" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108897" i_stop="106762" i_length="2136">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106761" g_stop="106683" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="228" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106682" i_stop="105784" i_length="899">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105783" g_stop="105543" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="469" r_length="241" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105542" i_stop="105443" i_length="100">
            <donor d_prob="0.712" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105442" g_stop="105386" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="526" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E438278" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109144" e_stop="109084"/>
          <exon e_start="108990" e_stop="108898"/>
          <exon e_start="106761" e_stop="106683"/>
          <exon e_start="105783" e_stop="105543"/>
          <exon e_start="105442" e_stop="105386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAAATCTCCTCCATTAATCTTCGTTTTCGAGTCTTCTCTAATCAGCCATGGGCTCTGGTAATTTACTCTTTCTAACTAGCTATTTTTTTTGTGTTAATCTGATTTTGTGAATGTTAATGTAAGTGTATTTTCAAATTTTTTTGTTTGAAGATGCAGATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAGGTTTTCAAATTTTGAATGTTGTAATTATGCTGATAAATTTTATGCTTTTGTTTTGATTTTACTTCCTCTACTTGGATTACAAAAAAATCAGCTGCGTTAGTTACTTCTCTTCGGAAAAAACTTTTGCGAACAAACTAAATTTGCATTAAAATTTTCACACATTAACCTGAGGAAAACAATTAAGGTATTGAATATGCATCATGTATGTGAATGTTTATAGTTTAGTATGTGTTAATTTAAGTTTGATTACTATGTTAGATGTTATTTTGATTGTTTCAGTTGGGAAACAGTAAAGAGGTCTTTGTTTGTTAACTTGGCTAATTTGTTAGATTATAGAGGAAAGTACTTTAAGGAAGATCTGTTAAGAAAGAGCAGTTGTTGCTTGAGAAAATTGGGAGGACTTGAAATTGGAAATTACTAAGAAAGGTGATTAAGTCAATATTTTCTTTTGATTTGAATTAGGGAAAAACTTAATACTAAATTGTTAAAGAGAATAATATAATTTGGATTGTTAAATTTAGAGTTTTGTATTTCGAACATAATGCTCCAACTTCCTTCTTTTTGTTTTTGGGATAACCGTTGGCTCATGGTTCTCAACACACTTCATTGATCACTTTGGGTCTTGGCCACACTTTTGGGAGAGCACCAAATTGCTTATTATCATTTCCAAGGTGACAGAACAAAATATTGTGGTCTGCTACAAGACGAGCAATCGCGGTGACTCTGCATTGTTGAGTTTACCTGTAAACTGTATTAACAGAGGTGAATATTGGGTTGAAATTTAAGGAACGCATTGATCCCTTCTTTTTCGTGAAAGCGTAACACCCTTAAAGGGGCATTTGATTTGGTCAATCTATTATGTCTGGATTCTGAAATAAGGTAGTTATCGGCTGCATGATATGGCTTCAAATTCAATGTTTTTTCTGCACTTTTAGGAGTGAAACCTGGACATATAGAGGAGAAATCTAGGCCGCTAATTATGTTCATTTGTAAAAGGAACTTCAAGGAGTAGGAAAGAAGGCATATTAGCTCAGTATATTTTAGACATTGCAGGGTCCTTATAGTTAATTTTCTTCTTTTAACTTTCTTTTGATGGTTTGTTTTAATCACCTGTATCATTGAGTTACGTATGGGAGTAGTGCTTTAATTTATAGGACATAAGTTTGGGAAGTTAATTATCAAAGAGAAAAGGCAAGTCTGCTCTTTGTCCTCTGGAATTTTATCCCTCGTGATTTTGTTCTCAGGGAAAGGCTTCCATAGATTTATTTAGTGTTGGAAGGTTGGAAAAGGAGAATCCATCCCTTATCCTATATAAGTTCTAGGATTGTAATGGTTGAATTTTGTCACAGCAAGGTTAGGGAAAGCCATAATTTTATCTATTAGAGTCAAGTCGGTCATAAGGTTGTCTATTAGAGCCAAGTCGGTCATAAGGTTGTCTATTAGAGCCAAGTTGGTTTACAGTTGCCATGATTTTCTATTTTCTTTGGTTCTAAACAATGTTAGAGAAAGTGAAGATTGTAGCAGTGATGTTTCTCTCACTTGACTCCCCTGTCTTTTTCTGTGGAGACGCCTATGAAGTGTGATGCTCTATGTGAAACAGATCTTTTGTATAATACAATTATTTCCCAATGATTTTGTATGAATGTGATGACAGTTGCGAGGGAAGAACTTGCAAACGTAGAAGTTACCCAGATATTAAATAATCTGAAAAAGCAAACTGTACCAGTAGCAGCAACAGATACTCCTGTAAAGAAATCCTTGGTTGTAAGGGAGTAACAGATTATGCTATGTGCTATGTAATGGTGTTGATTTTATCTACCGAGTTCCAAACCGTGCAACAGCTGATCCTTGGGAATTTCTCAGTTGTCAAAACAATAGTACTCCCTGGATATAAGATAGTTATAAGTCATGTGATATCCTATGTAATGGCATTGACTTTATCTACTGAGCTTCGAATTGCAGCTGCTTCTCGGGAATTTCTTTGTTATAAAAAAAAGGGTGTTGACTTTAACACAACTATGTGGATAATCTATATATGCATCTTAAACTACTTATCTTGGACTAATATCTCTTATCTTTTTTTCCTCTCTTTGGACATGTTTTCCTACTAATATTCCGTGATTATGTCATTCATAGGCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTGGTAAGAAATTGAAAGTAATAAAAATTTGTGCAGTATGGTAGTTGTTAAACTGATCAGCTAACTCCCTTTGTGTTTGTTTTATAAAGAGAATAGATGGCTGTGTATTTGTGAGATTTGTGAGGCCAGAGACTGATGTGATGGATATGTCCATACGAAGTTCAGGGTCATTAAGAACTGCATGTTCTCATTGCAGTTAATTTTATGTCTCAAGTAAACTACTACAACCTTGTATTAATTGACATGCAATTACAGCCTAAGAAACAAGCTGATGATGAATTATGAGAAACTGCAAGTTGAGATAGATTGTATTTTCTTCATTATGTAAATGCTTGTATGGGCATGTGGGAGAAGATCCTGATAGTTTATTTAACTTTTATCATTCTTACAAGCCTGTGGAGAAAAATGTTGACCTTCCAAGTGCAGATAATTGTTTGACAAGAACTGGAAATATTTTTCAGATTTCTCCCTTTGGGTCTCTTGCTCCTATTTGGTTTACATGTGTGAAATTTAAAAAATTTCAGAAACTTTTGCTCTGAGCACTTAGGTTGAGACCTCTAGTTCATTGTCAGATCTGATATGTTTGGTTTTTTTTTTTTCGCTTTTTATGTTGTTTCGTGAATTTGGTAACTTGATATTAATCACTGAGAATACTTGTGCACACGTTATAATTGTAATCCAAAAGGCGTCTTACTATTTCCCAAATTTGCTTCTTGTTCATGTGATTTGATGCTTCTTAGAAAACTTCGTAATTGTATTGCTAAAAGTTGTGGTGCTATTTTACACCTTTGCTTCTTCTTTTATGTAATTTGATGCTTTGTAAGTAAAGGTCTCTTGCAAGTTTTAAAATTCTCTGAAATACGCTGTCTGTGGCACTTACCAACTGTTCTTATTGTTTTTAGGGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAGGTCAGAACAATATTCCTTCTTGAGGGTATAGTAGGCTGGCTTTGAAGGTTCTAGAGTTCATGTTCTTGTCAAGGGCCTCATGGTCACCTTCTTTTCACAGAGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAG</genome_strand>
        <mrna_strand>CTCAAAAATCT-CTCCATTAA--ATC-TTTTC-AGTCTTCTCTAATCAGCCATGGGCTCTG.............................................................................................ATGCAGATATGGAGGACTATGGATTCGAGTATTCGGAGGAGGAGCCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGCTGAAACACACCCAGAGGCAGCACTTGAGGGATTTGCTGAAGTAGTTCATATGGAACCTGAGAAGGCTGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTAAAGCCTTGAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGAAATGATGGATGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCAGTGACAAGAAATTATAGCGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAGACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAG....................................................................................................AGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304474" ref_strand="+" ref_description="SGN-E304474 [cLEX-12-H18]">
      <seq>tctcttcacttcattcacagctcaaaaatctcctccattaatcttcgttttcgagtcttctctaatcagccatgggctctgatgcagatatggaggactatggattcgagtattcagaggaggaacctgaagagcaggatgttgatattgagaaccaatactacaactccaaaggcttggctgaaacagacccagaggcagcacttgagggttttgctgaagtacttcgtatggaacctgagaaggctgattggggatttaaagcctgaaagcaaactgttaagctttactataagctagggaagtacaagggaatgatggacgcttacagagaaatgctaacctacatcaagtcagctgtgacacgaaattatagtgaaaagtgtataaacaatatcatggatttcgtctcaggatcagctagtcagaactttgatctcctacaagagttctaccaaacaacattgaaagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="109464" stop="105263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109164" g_stop="109084" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109083" i_stop="108991" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108990" g_stop="108898" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="174" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108897" i_stop="106762" i_length="2136">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106761" g_stop="106683" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="253" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106682" i_stop="105784" i_length="899">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105783" g_stop="105563" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="474" r_length="221" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E304474" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109164" e_stop="109084"/>
          <exon e_start="108990" e_stop="108898"/>
          <exon e_start="106761" e_stop="106683"/>
          <exon e_start="105783" e_stop="105563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCACTTCATCCACAGCTCAAAAATCTCCTCCATTAATCTTCGTTTTCGAGTCTTCTCTAATCAGCCATGGGCTCTGGTAATTTACTCTTTCTAACTAGCTATTTTTTTTGTGTTAATCTGATTTTGTGAATGTTAATGTAAGTGTATTTTCAAATTTTTTTGTTTGAAGATGCAGATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAGGTTTTCAAATTTTGAATGTTGTAATTATGCTGATAAATTTTATGCTTTTGTTTTGATTTTACTTCCTCTACTTGGATTACAAAAAAATCAGCTGCGTTAGTTACTTCTCTTCGGAAAAAACTTTTGCGAACAAACTAAATTTGCATTAAAATTTTCACACATTAACCTGAGGAAAACAATTAAGGTATTGAATATGCATCATGTATGTGAATGTTTATAGTTTAGTATGTGTTAATTTAAGTTTGATTACTATGTTAGATGTTATTTTGATTGTTTCAGTTGGGAAACAGTAAAGAGGTCTTTGTTTGTTAACTTGGCTAATTTGTTAGATTATAGAGGAAAGTACTTTAAGGAAGATCTGTTAAGAAAGAGCAGTTGTTGCTTGAGAAAATTGGGAGGACTTGAAATTGGAAATTACTAAGAAAGGTGATTAAGTCAATATTTTCTTTTGATTTGAATTAGGGAAAAACTTAATACTAAATTGTTAAAGAGAATAATATAATTTGGATTGTTAAATTTAGAGTTTTGTATTTCGAACATAATGCTCCAACTTCCTTCTTTTTGTTTTTGGGATAACCGTTGGCTCATGGTTCTCAACACACTTCATTGATCACTTTGGGTCTTGGCCACACTTTTGGGAGAGCACCAAATTGCTTATTATCATTTCCAAGGTGACAGAACAAAATATTGTGGTCTGCTACAAGACGAGCAATCGCGGTGACTCTGCATTGTTGAGTTTACCTGTAAACTGTATTAACAGAGGTGAATATTGGGTTGAAATTTAAGGAACGCATTGATCCCTTCTTTTTCGTGAAAGCGTAACACCCTTAAAGGGGCATTTGATTTGGTCAATCTATTATGTCTGGATTCTGAAATAAGGTAGTTATCGGCTGCATGATATGGCTTCAAATTCAATGTTTTTTCTGCACTTTTAGGAGTGAAACCTGGACATATAGAGGAGAAATCTAGGCCGCTAATTATGTTCATTTGTAAAAGGAACTTCAAGGAGTAGGAAAGAAGGCATATTAGCTCAGTATATTTTAGACATTGCAGGGTCCTTATAGTTAATTTTCTTCTTTTAACTTTCTTTTGATGGTTTGTTTTAATCACCTGTATCATTGAGTTACGTATGGGAGTAGTGCTTTAATTTATAGGACATAAGTTTGGGAAGTTAATTATCAAAGAGAAAAGGCAAGTCTGCTCTTTGTCCTCTGGAATTTTATCCCTCGTGATTTTGTTCTCAGGGAAAGGCTTCCATAGATTTATTTAGTGTTGGAAGGTTGGAAAAGGAGAATCCATCCCTTATCCTATATAAGTTCTAGGATTGTAATGGTTGAATTTTGTCACAGCAAGGTTAGGGAAAGCCATAATTTTATCTATTAGAGTCAAGTCGGTCATAAGGTTGTCTATTAGAGCCAAGTCGGTCATAAGGTTGTCTATTAGAGCCAAGTTGGTTTACAGTTGCCATGATTTTCTATTTTCTTTGGTTCTAAACAATGTTAGAGAAAGTGAAGATTGTAGCAGTGATGTTTCTCTCACTTGACTCCCCTGTCTTTTTCTGTGGAGACGCCTATGAAGTGTGATGCTCTATGTGAAACAGATCTTTTGTATAATACAATTATTTCCCAATGATTTTGTATGAATGTGATGACAGTTGCGAGGGAAGAACTTGCAAACGTAGAAGTTACCCAGATATTAAATAATCTGAAAAAGCAAACTGTACCAGTAGCAGCAACAGATACTCCTGTAAAGAAATCCTTGGTTGTAAGGGAGTAACAGATTATGCTATGTGCTATGTAATGGTGTTGATTTTATCTACCGAGTTCCAAACCGTGCAACAGCTGATCCTTGGGAATTTCTCAGTTGTCAAAACAATAGTACTCCCTGGATATAAGATAGTTATAAGTCATGTGATATCCTATGTAATGGCATTGACTTTATCTACTGAGCTTCGAATTGCAGCTGCTTCTCGGGAATTTCTTTGTTATAAAAAAAAGGGTGTTGACTTTAACACAACTATGTGGATAATCTATATATGCATCTTAAACTACTTATCTTGGACTAATATCTCTTATCTTTTTTTCCTCTCTTTGGACATGTTTTCCTACTAATATTCCGTGATTATGTCATTCATAGGCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTGGTAAGAAATTGAAAGTAATAAAAATTTGTGCAGTATGGTAGTTGTTAAACTGATCAGCTAACTCCCTTTGTGTTTGTTTTATAAAGAGAATAGATGGCTGTGTATTTGTGAGATTTGTGAGGCCAGAGACTGATGTGATGGATATGTCCATACGAAGTTCAGGGTCATTAAGAACTGCATGTTCTCATTGCAGTTAATTTTATGTCTCAAGTAAACTACTACAACCTTGTATTAATTGACATGCAATTACAGCCTAAGAAACAAGCTGATGATGAATTATGAGAAACTGCAAGTTGAGATAGATTGTATTTTCTTCATTATGTAAATGCTTGTATGGGCATGTGGGAGAAGATCCTGATAGTTTATTTAACTTTTATCATTCTTACAAGCCTGTGGAGAAAAATGTTGACCTTCCAAGTGCAGATAATTGTTTGACAAGAACTGGAAATATTTTTCAGATTTCTCCCTTTGGGTCTCTTGCTCCTATTTGGTTTACATGTGTGAAATTTAAAAAATTTCAGAAACTTTTGCTCTGAGCACTTAGGTTGAGACCTCTAGTTCATTGTCAGATCTGATATGTTTGGTTTTTTTTTTTTCGCTTTTTATGTTGTTTCGTGAATTTGGTAACTTGATATTAATCACTGAGAATACTTGTGCACACGTTATAATTGTAATCCAAAAGGCGTCTTACTATTTCCCAAATTTGCTTCTTGTTCATGTGATTTGATGCTTCTTAGAAAACTTCGTAATTGTATTGCTAAAAGTTGTGGTGCTATTTTACACCTTTGCTTCTTCTTTTATGTAATTTGATGCTTTGTAAGTAAAGGTCTCTTGCAAGTTTTAAAATTCTCTGAAATACGCTGTCTGTGGCACTTACCAACTGTTCTTATTGTTTTTAGGGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCC</genome_strand>
        <mrna_strand>TCTCTTCACTTCATTCACAGCTCAAAAATCTCCTCCATTAATCTTCGTTTTCGAGTCTTCTCTAATCAGCCATGGGCTCTG.............................................................................................ATGCAGATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTACTTCGTATGGAACCTGAGAAGGCTGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTAAAGCCTGAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACACGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301350" ref_strand="+" ref_description="SGN-E301350 [cLEW-24-D7]">
      <seq>gacttcatccacagctcaaaaatctcctccattaatcttcgtttgggagtcttctctaatcagccatgggctctgatgcagatatggaggactatggattcgagtattcagaggaggaacctgaagagcaggatgttgatattgagaaccaatactacaactccaaaggcttggctgaaacagacccagaggcagcacttgagggttttgctgaagtagttcgtatggaacctgagaaggctgattggggatttaaagccttaaagcaaactgttaagctttactataagctagggaagtacaagggaatgatggacgcttacagagaaatgctaacctacatcaagtcagctgtgacaagaaattatagtgaaaagtgtataaacaatatcatggatttcgtctcaagatcagctagtcagaactttgatctcctacaagagttctaccaaacaacattgaaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="109457" stop="105264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109158" g_stop="109084" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109083" i_stop="108991" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108990" g_stop="108898" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="168" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108897" i_stop="106762" i_length="2136">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106761" g_stop="106683" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="247" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106682" i_stop="105784" i_length="899">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105783" g_stop="105564" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="467" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E301350" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109158" e_stop="109084"/>
          <exon e_start="108990" e_stop="108898"/>
          <exon e_start="106761" e_stop="106683"/>
          <exon e_start="105783" e_stop="105564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCATCCACAGCTCAAAAATCTCCTCCATTAATCTTCGTTTTCGAGTCTTCTCTAATCAGCCATGGGCTCTGGTAATTTACTCTTTCTAACTAGCTATTTTTTTTGTGTTAATCTGATTTTGTGAATGTTAATGTAAGTGTATTTTCAAATTTTTTTGTTTGAAGATGCAGATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAGGTTTTCAAATTTTGAATGTTGTAATTATGCTGATAAATTTTATGCTTTTGTTTTGATTTTACTTCCTCTACTTGGATTACAAAAAAATCAGCTGCGTTAGTTACTTCTCTTCGGAAAAAACTTTTGCGAACAAACTAAATTTGCATTAAAATTTTCACACATTAACCTGAGGAAAACAATTAAGGTATTGAATATGCATCATGTATGTGAATGTTTATAGTTTAGTATGTGTTAATTTAAGTTTGATTACTATGTTAGATGTTATTTTGATTGTTTCAGTTGGGAAACAGTAAAGAGGTCTTTGTTTGTTAACTTGGCTAATTTGTTAGATTATAGAGGAAAGTACTTTAAGGAAGATCTGTTAAGAAAGAGCAGTTGTTGCTTGAGAAAATTGGGAGGACTTGAAATTGGAAATTACTAAGAAAGGTGATTAAGTCAATATTTTCTTTTGATTTGAATTAGGGAAAAACTTAATACTAAATTGTTAAAGAGAATAATATAATTTGGATTGTTAAATTTAGAGTTTTGTATTTCGAACATAATGCTCCAACTTCCTTCTTTTTGTTTTTGGGATAACCGTTGGCTCATGGTTCTCAACACACTTCATTGATCACTTTGGGTCTTGGCCACACTTTTGGGAGAGCACCAAATTGCTTATTATCATTTCCAAGGTGACAGAACAAAATATTGTGGTCTGCTACAAGACGAGCAATCGCGGTGACTCTGCATTGTTGAGTTTACCTGTAAACTGTATTAACAGAGGTGAATATTGGGTTGAAATTTAAGGAACGCATTGATCCCTTCTTTTTCGTGAAAGCGTAACACCCTTAAAGGGGCATTTGATTTGGTCAATCTATTATGTCTGGATTCTGAAATAAGGTAGTTATCGGCTGCATGATATGGCTTCAAATTCAATGTTTTTTCTGCACTTTTAGGAGTGAAACCTGGACATATAGAGGAGAAATCTAGGCCGCTAATTATGTTCATTTGTAAAAGGAACTTCAAGGAGTAGGAAAGAAGGCATATTAGCTCAGTATATTTTAGACATTGCAGGGTCCTTATAGTTAATTTTCTTCTTTTAACTTTCTTTTGATGGTTTGTTTTAATCACCTGTATCATTGAGTTACGTATGGGAGTAGTGCTTTAATTTATAGGACATAAGTTTGGGAAGTTAATTATCAAAGAGAAAAGGCAAGTCTGCTCTTTGTCCTCTGGAATTTTATCCCTCGTGATTTTGTTCTCAGGGAAAGGCTTCCATAGATTTATTTAGTGTTGGAAGGTTGGAAAAGGAGAATCCATCCCTTATCCTATATAAGTTCTAGGATTGTAATGGTTGAATTTTGTCACAGCAAGGTTAGGGAAAGCCATAATTTTATCTATTAGAGTCAAGTCGGTCATAAGGTTGTCTATTAGAGCCAAGTCGGTCATAAGGTTGTCTATTAGAGCCAAGTTGGTTTACAGTTGCCATGATTTTCTATTTTCTTTGGTTCTAAACAATGTTAGAGAAAGTGAAGATTGTAGCAGTGATGTTTCTCTCACTTGACTCCCCTGTCTTTTTCTGTGGAGACGCCTATGAAGTGTGATGCTCTATGTGAAACAGATCTTTTGTATAATACAATTATTTCCCAATGATTTTGTATGAATGTGATGACAGTTGCGAGGGAAGAACTTGCAAACGTAGAAGTTACCCAGATATTAAATAATCTGAAAAAGCAAACTGTACCAGTAGCAGCAACAGATACTCCTGTAAAGAAATCCTTGGTTGTAAGGGAGTAACAGATTATGCTATGTGCTATGTAATGGTGTTGATTTTATCTACCGAGTTCCAAACCGTGCAACAGCTGATCCTTGGGAATTTCTCAGTTGTCAAAACAATAGTACTCCCTGGATATAAGATAGTTATAAGTCATGTGATATCCTATGTAATGGCATTGACTTTATCTACTGAGCTTCGAATTGCAGCTGCTTCTCGGGAATTTCTTTGTTATAAAAAAAAGGGTGTTGACTTTAACACAACTATGTGGATAATCTATATATGCATCTTAAACTACTTATCTTGGACTAATATCTCTTATCTTTTTTTCCTCTCTTTGGACATGTTTTCCTACTAATATTCCGTGATTATGTCATTCATAGGCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTGGTAAGAAATTGAAAGTAATAAAAATTTGTGCAGTATGGTAGTTGTTAAACTGATCAGCTAACTCCCTTTGTGTTTGTTTTATAAAGAGAATAGATGGCTGTGTATTTGTGAGATTTGTGAGGCCAGAGACTGATGTGATGGATATGTCCATACGAAGTTCAGGGTCATTAAGAACTGCATGTTCTCATTGCAGTTAATTTTATGTCTCAAGTAAACTACTACAACCTTGTATTAATTGACATGCAATTACAGCCTAAGAAACAAGCTGATGATGAATTATGAGAAACTGCAAGTTGAGATAGATTGTATTTTCTTCATTATGTAAATGCTTGTATGGGCATGTGGGAGAAGATCCTGATAGTTTATTTAACTTTTATCATTCTTACAAGCCTGTGGAGAAAAATGTTGACCTTCCAAGTGCAGATAATTGTTTGACAAGAACTGGAAATATTTTTCAGATTTCTCCCTTTGGGTCTCTTGCTCCTATTTGGTTTACATGTGTGAAATTTAAAAAATTTCAGAAACTTTTGCTCTGAGCACTTAGGTTGAGACCTCTAGTTCATTGTCAGATCTGATATGTTTGGTTTTTTTTTTTTCGCTTTTTATGTTGTTTCGTGAATTTGGTAACTTGATATTAATCACTGAGAATACTTGTGCACACGTTATAATTGTAATCCAAAAGGCGTCTTACTATTTCCCAAATTTGCTTCTTGTTCATGTGATTTGATGCTTCTTAGAAAACTTCGTAATTGTATTGCTAAAAGTTGTGGTGCTATTTTACACCTTTGCTTCTTCTTTTATGTAATTTGATGCTTTGTAAGTAAAGGTCTCTTGCAAGTTTTAAAATTCTCTGAAATACGCTGTCTGTGGCACTTACCAACTGTTCTTATTGTTTTTAGGGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCC</genome_strand>
        <mrna_strand>GACTTCATCCACAGCTCAAAAATCTCCTCCATTAATCTTCGTTTGGGAGTCTTCTCTAATCAGCCATGGGCTCTG.............................................................................................ATGCAGATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAAGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207596" ref_strand="+" ref_description="SGN-E207596 [cLEC-32-A10]">
      <seq>ttcacttcatccacagctcaaaaatctcctccattaatcttcgttttcgagtcttctctaatcagccatgggctctgatgcagatatggaggactatggattcgagtattcagaggaggaacctgaagagcaggatgttgatattgagaaccaatactacaactccaaaggcttggctgaaacagacccagaggcagcacttgagggttttgctgaagtagttcgtatggaacctgagaaggctgattggggatttaaagccttaaagcaaactgttaagctttactataagctagggaagtacaagggaatgatggacgcttacagagaaatgctaacctacatcaagtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0029C01-lSZwk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0029C01.2" temp_strand="-" temp_description="C11HBa0029C01.2  AC212430.2 htgs_phase:3 submitted_to_sgn_as:gi|166159188|gb|AC212430.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0029C01, complete sequence">
        <position start="109460" stop="105380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109160" g_stop="109084" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109083" i_stop="108991" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108990" g_stop="108898" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="170" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108897" i_stop="106762" i_length="2136">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106761" g_stop="106683" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="249" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106682" i_stop="105784" i_length="899">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105783" g_stop="105680" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="353" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0029C01.2" gen_strand="-" ref_id="SGN-E207596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0029C01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109160" e_stop="109084"/>
          <exon e_start="108990" e_stop="108898"/>
          <exon e_start="106761" e_stop="106683"/>
          <exon e_start="105783" e_stop="105680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTCATCCACAGCTCAAAAATCTCCTCCATTAATCTTCGTTTTCGAGTCTTCTCTAATCAGCCATGGGCTCTGGTAATTTACTCTTTCTAACTAGCTATTTTTTTTGTGTTAATCTGATTTTGTGAATGTTAATGTAAGTGTATTTTCAAATTTTTTTGTTTGAAGATGCAGATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAGGTTTTCAAATTTTGAATGTTGTAATTATGCTGATAAATTTTATGCTTTTGTTTTGATTTTACTTCCTCTACTTGGATTACAAAAAAATCAGCTGCGTTAGTTACTTCTCTTCGGAAAAAACTTTTGCGAACAAACTAAATTTGCATTAAAATTTTCACACATTAACCTGAGGAAAACAATTAAGGTATTGAATATGCATCATGTATGTGAATGTTTATAGTTTAGTATGTGTTAATTTAAGTTTGATTACTATGTTAGATGTTATTTTGATTGTTTCAGTTGGGAAACAGTAAAGAGGTCTTTGTTTGTTAACTTGGCTAATTTGTTAGATTATAGAGGAAAGTACTTTAAGGAAGATCTGTTAAGAAAGAGCAGTTGTTGCTTGAGAAAATTGGGAGGACTTGAAATTGGAAATTACTAAGAAAGGTGATTAAGTCAATATTTTCTTTTGATTTGAATTAGGGAAAAACTTAATACTAAATTGTTAAAGAGAATAATATAATTTGGATTGTTAAATTTAGAGTTTTGTATTTCGAACATAATGCTCCAACTTCCTTCTTTTTGTTTTTGGGATAACCGTTGGCTCATGGTTCTCAACACACTTCATTGATCACTTTGGGTCTTGGCCACACTTTTGGGAGAGCACCAAATTGCTTATTATCATTTCCAAGGTGACAGAACAAAATATTGTGGTCTGCTACAAGACGAGCAATCGCGGTGACTCTGCATTGTTGAGTTTACCTGTAAACTGTATTAACAGAGGTGAATATTGGGTTGAAATTTAAGGAACGCATTGATCCCTTCTTTTTCGTGAAAGCGTAACACCCTTAAAGGGGCATTTGATTTGGTCAATCTATTATGTCTGGATTCTGAAATAAGGTAGTTATCGGCTGCATGATATGGCTTCAAATTCAATGTTTTTTCTGCACTTTTAGGAGTGAAACCTGGACATATAGAGGAGAAATCTAGGCCGCTAATTATGTTCATTTGTAAAAGGAACTTCAAGGAGTAGGAAAGAAGGCATATTAGCTCAGTATATTTTAGACATTGCAGGGTCCTTATAGTTAATTTTCTTCTTTTAACTTTCTTTTGATGGTTTGTTTTAATCACCTGTATCATTGAGTTACGTATGGGAGTAGTGCTTTAATTTATAGGACATAAGTTTGGGAAGTTAATTATCAAAGAGAAAAGGCAAGTCTGCTCTTTGTCCTCTGGAATTTTATCCCTCGTGATTTTGTTCTCAGGGAAAGGCTTCCATAGATTTATTTAGTGTTGGAAGGTTGGAAAAGGAGAATCCATCCCTTATCCTATATAAGTTCTAGGATTGTAATGGTTGAATTTTGTCACAGCAAGGTTAGGGAAAGCCATAATTTTATCTATTAGAGTCAAGTCGGTCATAAGGTTGTCTATTAGAGCCAAGTCGGTCATAAGGTTGTCTATTAGAGCCAAGTTGGTTTACAGTTGCCATGATTTTCTATTTTCTTTGGTTCTAAACAATGTTAGAGAAAGTGAAGATTGTAGCAGTGATGTTTCTCTCACTTGACTCCCCTGTCTTTTTCTGTGGAGACGCCTATGAAGTGTGATGCTCTATGTGAAACAGATCTTTTGTATAATACAATTATTTCCCAATGATTTTGTATGAATGTGATGACAGTTGCGAGGGAAGAACTTGCAAACGTAGAAGTTACCCAGATATTAAATAATCTGAAAAAGCAAACTGTACCAGTAGCAGCAACAGATACTCCTGTAAAGAAATCCTTGGTTGTAAGGGAGTAACAGATTATGCTATGTGCTATGTAATGGTGTTGATTTTATCTACCGAGTTCCAAACCGTGCAACAGCTGATCCTTGGGAATTTCTCAGTTGTCAAAACAATAGTACTCCCTGGATATAAGATAGTTATAAGTCATGTGATATCCTATGTAATGGCATTGACTTTATCTACTGAGCTTCGAATTGCAGCTGCTTCTCGGGAATTTCTTTGTTATAAAAAAAAGGGTGTTGACTTTAACACAACTATGTGGATAATCTATATATGCATCTTAAACTACTTATCTTGGACTAATATCTCTTATCTTTTTTTCCTCTCTTTGGACATGTTTTCCTACTAATATTCCGTGATTATGTCATTCATAGGCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTGGTAAGAAATTGAAAGTAATAAAAATTTGTGCAGTATGGTAGTTGTTAAACTGATCAGCTAACTCCCTTTGTGTTTGTTTTATAAAGAGAATAGATGGCTGTGTATTTGTGAGATTTGTGAGGCCAGAGACTGATGTGATGGATATGTCCATACGAAGTTCAGGGTCATTAAGAACTGCATGTTCTCATTGCAGTTAATTTTATGTCTCAAGTAAACTACTACAACCTTGTATTAATTGACATGCAATTACAGCCTAAGAAACAAGCTGATGATGAATTATGAGAAACTGCAAGTTGAGATAGATTGTATTTTCTTCATTATGTAAATGCTTGTATGGGCATGTGGGAGAAGATCCTGATAGTTTATTTAACTTTTATCATTCTTACAAGCCTGTGGAGAAAAATGTTGACCTTCCAAGTGCAGATAATTGTTTGACAAGAACTGGAAATATTTTTCAGATTTCTCCCTTTGGGTCTCTTGCTCCTATTTGGTTTACATGTGTGAAATTTAAAAAATTTCAGAAACTTTTGCTCTGAGCACTTAGGTTGAGACCTCTAGTTCATTGTCAGATCTGATATGTTTGGTTTTTTTTTTTTCGCTTTTTATGTTGTTTCGTGAATTTGGTAACTTGATATTAATCACTGAGAATACTTGTGCACACGTTATAATTGTAATCCAAAAGGCGTCTTACTATTTCCCAAATTTGCTTCTTGTTCATGTGATTTGATGCTTCTTAGAAAACTTCGTAATTGTATTGCTAAAAGTTGTGGTGCTATTTTACACCTTTGCTTCTTCTTTTATGTAATTTGATGCTTTGTAAGTAAAGGTCTCTTGCAAGTTTTAAAATTCTCTGAAATACGCTGTCTGTGGCACTTACCAACTGTTCTTATTGTTTTTAGGGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAG</genome_strand>
        <mrna_strand>TTCACTTCATCCACAGCTCAAAAATCTCCTCCATTAATCTTCGTTTTCGAGTCTTCTCTAATCAGCCATGGGCTCTG.............................................................................................ATGCAGATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>97</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="2580"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="35"/>
            <exon e_start="1311" e_stop="1445"/>
            <exon e_start="1730" e_stop="1879"/>
            <exon e_start="2183" e_stop="2580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1" e_stop="35" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36" i_stop="1310" i_length="1275"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1311" e_stop="1445" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.968">
            <gDNA_intron_boundary i_start="1446" i_stop="1729" i_length="284"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1730" e_stop="1879" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1880" i_stop="2182" i_length="303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2183" e_stop="2580" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="35"/>
              <exon start="1311" stop="1445"/>
              <exon start="1730" stop="1879"/>
              <exon start="2183" stop="2580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="35"/>
              <exon start="1311" stop="1445"/>
              <exon start="1730" stop="1879"/>
              <exon start="2183" stop="2573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="35"/>
              <exon start="1311" stop="1445"/>
              <exon start="1730" stop="1879"/>
              <exon start="2183" stop="2332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462301" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTTTGGTGCGTAGGCATGACATTGAATTCAAT : GTAGTTGTTGTCCAGATGAATGGAACAGATCATACATCAGAGACTATCCATGTACTTCACATCGGAAGGATGAGAATGAAACTATGTAAAGGGAAGACCAGCATAGCAAAAGAATACTATTCCACTTCAATGCAG : TTATGTGGCGTCCGAGGTGGTGGAAATGCTGCAGCTCAGGCAGCATTTTGGCAAGTAAAGACTGGACTCTCCTTTGTATTGGCGTTTGAAACGGAGAGAGAAAGAAATGCAGCCATTATGCTGGCCAGAAGATTTGCTTACGACTGCAAT : ATTATGCTATCTGGACCGGATGATAGAGCCACTCCTGGATCTTAAGAAAGCTACTATAATAAAAAGGTGTAATTATACTGACTCTGATGTATCTATAGGTGCTTTGTAGTAGTGAATATGCAGTAGGGTTGATTGTTGAGTGGCATTTTTTCACCACCTTCTTGTCTTCTCTTTATTTCTATCTTGATAAGCAAAGGCATTGTTTTTTGTGTCCCTAGCTCTATTTGATTGTAATGATTCTTTGCTCCTTGTTTCTTTGTTTTGTCAAGTGATTGTAATTGAGCTCAAACATACATTTGATTTTTGAATGGCTTGTAGTGATTGACTTGTGTTCTTCAAACAACAATCCTTTTTATGTTTGGATGAAATGATTATATAACTAAATCATGCTGAAGTTC</gDNA_template>
            <first_frame> K  L  W  C  V  G  M  T  L  N  S  M :   *  L  L  S  R  *  M  E  Q  I  I  H  Q  R  L  S  M  Y  F  T  S  E  G  *  E  *  N  Y  V  K  G  R  P  A  *  Q  K  N  T  I  P  L  Q  C  S :   Y  V  A  S  E  V  V  E  M  L  Q  L  R  Q  H  F  G  K  *  R  L  D  S  P  L  Y  W  R  L  K  R  R  E  K  E  M  Q  P  L  C  W  P  E  D  L  L  T  T  A  I :   L  C  Y  L  D  R  M  I  E  P  L  L  D  L  K  K  A  T  I  I  K  R  C  N  Y  T  D  S  D  V  S  I  G  A  L  *  *  *  I  C  S  R  V  D  C  *  V  A  F  F  H  H  L  L  V  F  S  L  F  L  S  *  *  A  K  A  L  F  F  V  S  L  A  L  F  D  C  N  D  S  L  L  L  V  S  L  F  C  Q  V  I  V  I  E  L  K  H  T  F  D  F  *  M  A  C  S  D  *  L  V  F  F  K  Q  Q  S  F  L  C  L  D  E  M  I  I  *  L  N  H  A  E  V  </first_frame>
            <second_frame>  S  F  G  A  *  A  *  H  *  I  Q   : C  S  C  C  P  D  E  W  N  R  S  Y  I  R  D  Y  P  C  T  S  H  R  K  D  E  N  E  T  M  *  R  E  D  Q  H  S  K  R  I  L  F  H  F  N  A   : V  M  W  R  P  R  W  W  K  C  C  S  S  G  S  I  L  A  S  K  D  W  T  L  L  C  I  G  V  *  N  G  E  R  K  K  C  S  H  Y  A  G  Q  K  I  C  L  R  L  Q   : Y  Y  A  I  W  T  G  *  *  S  H  S  W  I  L  R  K  L  L  *  *  K  G  V  I  I  L  T  L  M  Y  L  *  V  L  C  S  S  E  Y  A  V  G  L  I  V  E  W  H  F  F  T  T  F  L  S  S  L  Y  F  Y  L  D  K  Q  R  H  C  F  L  C  P  *  L  Y  L  I  V  M  I  L  C  S  L  F  L  C  F  V  K  *  L  *  L  S  S  N  I  H  L  I  F  E  W  L  V  V  I  D  L  C  S  S  N  N  N  P  F  Y  V  W  M  K  *  L  Y  N  *  I  M  L  K  F </second_frame>
            <third_frame>   A  L  V  R  R  H  D  I  E  F  N  :  V  V  V  V  Q  M  N  G  T  D  H  T  S  E  T  I  H  V  L  H  I  G  R  M  R  M  K  L  C  K  G  K  T  S  I  A  K  E  Y  Y  S  T  S  M  Q  :  L  C  G  V  R  G  G  G  N  A  A  A  Q  A  A  F  W  Q  V  K  T  G  L  S  F  V  L  A  F  E  T  E  R  E  R  N  A  A  I  M  L  A  R  R  F  A  Y  D  C  N  :  I  M  L  S  G  P  D  D  R  A  T  P  G  S  *  E  S  Y  Y  N  K  K  V  *  L  Y  *  L  *  C  I  Y  R  C  F  V  V  V  N  M  Q  *  G  *  L  L  S  G  I  F  S  P  P  S  C  L  L  F  I  S  I  L  I  S  K  G  I  V  F  C  V  P  S  S  I  *  L  *  *  F  F  A  P  C  F  F  V  L  S  S  D  C  N  *  A  Q  T  Y  I  *  F  L  N  G  L  *  *  L  T  C  V  L  Q  T  T  I  L  F  M  F  G  *  N  D  Y  I  T  K  S  C  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3" stop="35"/>
                    <exon start="1311" stop="1445"/>
                    <exon start="1730" stop="1879"/>
                    <exon start="2183" stop="2227"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALVRRHDIEFNVVVVQMNGTDHTSETIHVLHIGRMRMKLCKGKTSIAKEYYSTSMQLCGVRGGGNAAAQAAFWQVKTGLSFVLAFETERERNAAIMLARRFAYDCNIMLSGPDDRATPGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="33665" PGL_stop="35996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33665" e_stop="33831"/>
            <exon e_start="35014" e_stop="35339"/>
            <exon e_start="35432" e_stop="35567"/>
            <exon e_start="35893" e_stop="35996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.957" e_score="0.850"/>
          <exon-intron don_prob="0.981" acc_prob="0.988" e_score="0.985"/>
          <exon-intron don_prob="0.986" acc_prob="0.960" e_score="0.985"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.850">
            <gDNA_exon_boundary e_start="33665" e_stop="33831" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.957">
            <gDNA_intron_boundary i_start="33832" i_stop="35013" i_length="1182"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="35014" e_stop="35339" e_length="326"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.988">
            <gDNA_intron_boundary i_start="35340" i_stop="35431" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="35432" e_stop="35567" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.960">
            <gDNA_intron_boundary i_start="35568" i_stop="35892" i_length="325"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="35893" e_stop="35996" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33665" stop="33831"/>
              <exon start="35014" stop="35339"/>
              <exon start="35432" stop="35567"/>
              <exon start="35893" stop="35996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTTTTATTATACTTCTACTACCTCCTCTTTCTGTTCTACCCTTTCTTGATTTTTTTTATTTTTATTTTTCATCAAGAAATCTTGATTTTTTTCTTTTGTTTATTATGGGGATTTGCTTTGGTAAACCTGTTAAGCTTGCTCATGCCTCTTCTAGTTTGATGTCTG : ATTCTAGAACAGGCCCCGGCAGTGAGAGAAAGGAGTCAAGTCATTCTTGTAGACAGACACTTCAGGGAAGTTCAGGAAATGCTCTCAAGTCTTGTAAAGGTGATCTATCAGCCACTTGTAATCTCAAGTCCTTTACCTTCAATGACCTCAAAAATGCAACTAGGAATTTTCGAGCTGATAGTCTTCTCGGTGAGGGAGGATTTGGATATGTCTTCAAAGGATGGCTAGATGAAAATACACTTGCTCCCTGCAAATCTGGAACTGGGATGGTAGTGGCTGTCAAGAAACTTAAGTCAGAAAGCTGCCAGGGCCACAGAGAATGGCTT : GCAGAGGTTAACTACTTAGGGCAGCTTCACCACGAAAATCTTGTGACGTTGATTGGATATTGTGTAGAATCTGATAACCGGCTTCTAGTATACGAGTTTATGACCAAAGGAAGCTTGGAAAATCATCTATTCAGAA : AAGGAGTTCAGCTTATGACTTGGGGTAAACGGATGCGTATTGCAGTTGATGTTGCACGAGGGTTATCCTTTTTACATAGTCTGGATGCTAATGTGATCTACCGG</gDNA_template>
            <first_frame> H  F  Y  Y  T  S  T  T  S  S  F  C  S  T  L  S  *  F  F  L  F  L  F  F  I  K  K  S  *  F  F  S  F  V  Y  Y  G  D  L  L  W  *  T  C  *  A  C  S  C  L  F  *  F  D  V  * :   F  *  N  R  P  R  Q  *  E  K  G  V  K  S  F  L  *  T  D  T  S  G  K  F  R  K  C  S  Q  V  L  *  R  *  S  I  S  H  L  *  S  Q  V  L  Y  L  Q  *  P  Q  K  C  N  *  E  F  S  S  *  *  S  S  R  *  G  R  I  W  I  C  L  Q  R  M  A  R  *  K  Y  T  C  S  L  Q  I  W  N  W  D  G  S  G  C  Q  E  T  *  V  R  K  L  P  G  P  Q  R  M  A   : C  R  G  *  L  L  R  A  A  S  P  R  K  S  C  D  V  D  W  I  L  C  R  I  *  *  P  A  S  S  I  R  V  Y  D  Q  R  K  L  G  K  S  S  I  Q  K :   R  S  S  A  Y  D  L  G  *  T  D  A  Y  C  S  *  C  C  T  R  V  I  L  F  T  *  S  G  C  *  C  D  L  P  </first_frame>
            <second_frame>  T  F  I  I  L  L  L  P  P  L  S  V  L  P  F  L  D  F  F  Y  F  Y  F  S  S  R  N  L  D  F  F  L  L  F  I  M  G  I  C  F  G  K  P  V  K  L  A  H  A  S  S  S  L  M  S   : D  S  R  T  G  P  G  S  E  R  K  E  S  S  H  S  C  R  Q  T  L  Q  G  S  S  G  N  A  L  K  S  C  K  G  D  L  S  A  T  C  N  L  K  S  F  T  F  N  D  L  K  N  A  T  R  N  F  R  A  D  S  L  L  G  E  G  G  F  G  Y  V  F  K  G  W  L  D  E  N  T  L  A  P  C  K  S  G  T  G  M  V  V  A  V  K  K  L  K  S  E  S  C  Q  G  H  R  E  W  L  :  A  E  V  N  Y  L  G  Q  L  H  H  E  N  L  V  T  L  I  G  Y  C  V  E  S  D  N  R  L  L  V  Y  E  F  M  T  K  G  S  L  E  N  H  L  F  R   : K  G  V  Q  L  M  T  W  G  K  R  M  R  I  A  V  D  V  A  R  G  L  S  F  L  H  S  L  D  A  N  V  I  Y  R </second_frame>
            <third_frame>   L  L  L  Y  F  Y  Y  L  L  F  L  F  Y  P  F  L  I  F  F  I  F  I  F  H  Q  E  I  L  I  F  F  F  C  L  L  W  G  F  A  L  V  N  L  L  S  L  L  M  P  L  L  V  *  C  L  :  I  L  E  Q  A  P  A  V  R  E  R  S  Q  V  I  L  V  D  R  H  F  R  E  V  Q  E  M  L  S  S  L  V  K  V  I  Y  Q  P  L  V  I  S  S  P  L  P  S  M  T  S  K  M  Q  L  G  I  F  E  L  I  V  F  S  V  R  E  D  L  D  M  S  S  K  D  G  *  M  K  I  H  L  L  P  A  N  L  E  L  G  W  *  W  L  S  R  N  L  S  Q  K  A  A  R  A  T  E  N  G  L :   Q  R  L  T  T  *  G  S  F  T  T  K  I  L  *  R  *  L  D  I  V  *  N  L  I  T  G  F  *  Y  T  S  L  *  P  K  E  A  W  K  I  I  Y  S  E  :  K  E  F  S  L  *  L  G  V  N  G  C  V  L  Q  L  M  L  H  E  G  Y  P  F  Y  I  V  W  M  L  M  *  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33666" stop="33831"/>
                    <exon start="35014" stop="35339"/>
                    <exon start="35432" stop="35567"/>
                    <exon start="35893" stop="35996"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFIILLLPPLSVLPFLDFFYFYFSSRNLDFFLLFIMGICFGKPVKLAHASSSLMSDSRTGPGSERKESSHSCRQTLQGSSGNALKSCKGDLSATCNLKSFTFNDLKNATRNFRADSLLGEGGFGYVFKGWLDENTLAPCKSGTGMVVAVKKLKSESCQGHREWLAEVNYLGQLHHENLVTLIGYCVESDNRLLVYEFMTKGSLENHLFRKGVQLMTWGKRMRIAVDVARGLSFLHSLDANVIYR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="39028" PGL_stop="38454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39028" e_stop="38454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="39028" e_stop="38454" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39028" stop="38454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39027" stop="38619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATAATTGCAGACTTAAAAGGAGTATAAAATCACAAAGATTTTTGTCTCCACCAGAAACACAGATTTAATAATTTCCTTAAGATTGTTTCCAATCTGTGTTATGAAATCAGAAATTACTGGTTCTAATAAATCATTCAGAAACACAAAGTAACTGAGATTTAATAAAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAAATAATTTAATCTGTAAAAACGTACCAGAATCTGGAATACTCTTATTGAAAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATTTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGTGAATCAATCCACAACAAGAAAGTACACGAAGAAATATATGTTTTTAAGAAGAAGGAAGATCAGAAAAAATAAGTAGGAAATATTCTGAAGACTGAATGGTATTTATAAGCAAGAAGAATATATTCTGAAAGGTTGAGAATATATTCTGAAAGGTTGCAACCCTTTC</gDNA_template>
            <first_frame> N  I  I  A  D  L  K  G  V  *  N  H  K  D  F  C  L  H  Q  K  H  R  F  N  N  F  L  K  I  V  S  N  L  C  Y  E  I  R  N  Y  W  F  *  *  I  I  Q  K  H  K  V  T  E  I  *  *  N  Q  *  I  R  *  T  E  I  Y  L  *  K  I  I  *  S  V  K  T  Y  Q  N  L  E  Y  S  Y  *  K  F  R  K  K  I  K  S  T  E  F  T  V  S  P  *  G  N  Y  S  P  L  V  S  E  V  *  F  G  I  *  P  P  R  V  K  *  F  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  *  I  N  P  Q  Q  E  S  T  R  R  N  I  C  F  *  E  E  G  R  S  E  K  I  S  R  K  Y  S  E  D  *  M  V  F  I  S  K  K  N  I  F  *  K  V  E  N  I  F  *  K  V  A  T  L   </first_frame>
            <second_frame>  I  *  L  Q  T  *  K  E  Y  K  I  T  K  I  F  V  S  T  R  N  T  D  L  I  I  S  L  R  L  F  P  I  C  V  M  K  S  E  I  T  G  S  N  K  S  F  R  N  T  K  *  L  R  F  N  K  T  S  K  *  D  E  Q  K  F  I  C  K  K  *  F  N  L  *  K  R  T  R  I  W  N  T  L  I  E  N  L  G  K  K  S  S  P  L  N  S  Q  C  P  L  K  E  I  I  P  L  *  Y  P  R  F  D  L  E  Y  N  L  P  G  *  N  D  F  N  Q  *  S  I  D  T  K  N  S  T  V  S  E  S  I  H  N  K  K  V  H  E  E  I  Y  V  F  K  K  K  E  D  Q  K  K  *  V  G  N  I  L  K  T  E  W  Y  L  *  A  R  R  I  Y  S  E  R  L  R  I  Y  S  E  R  L  Q  P  F  </second_frame>
            <third_frame>   Y  N  C  R  L  K  R  S  I  K  S  Q  R  F  L  S  P  P  E  T  Q  I  *  *  F  P  *  D  C  F  Q  S  V  L  *  N  Q  K  L  L  V  L  I  N  H  S  E  T  Q  S  N  *  D  L  I  K  P  V  N  K  M  N  R  N  L  F  V  K  N  N  L  I  C  K  N  V  P  E  S  G  I  L  L  L  K  I  *  E  K  N  Q  V  H  *  I  H  S  V  P  L  R  K  L  F  P  S  S  I  R  G  L  I  W  N  I  T  S  Q  G  K  M  I  L  I  S  R  V  *  I  P  K  T  L  L  S  V  N  Q  S  T  T  R  K  Y  T  K  K  Y  M  F  L  R  R  R  K  I  R  K  N  K  *  E  I  F  *  R  L  N  G  I  Y  K  Q  E  E  Y  I  L  K  G  *  E  Y  I  L  K  G  C  N  P  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0029C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="39478" PGL_stop="39872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39478" e_stop="39872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="39478" e_stop="39872" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39478" stop="39872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39482" stop="39844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATTGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGGCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAATGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  V  N  E  A  F  Q  V  A  A  M  I  E  K  L  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  R  N  A  E  K  K  S  R  K  S  S  T  I  I  G  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  N  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  L  F  K  W  L  Q  *  L  R  S  C  L  L  R  G  M  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  G  S  R  L  R  K  I  T  E  M  P  K  R  S  R  V  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  T  G  R  S  Q  N  R  P  R  R  N  S  K  A  T  V  I  I  V  A  M  L  V  I  D  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  G  T  S  T  Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  *  E  V  A  S  F  V  E  *  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  A  Q  D  *  G  R  *  Q  K  C  R  K  E  V  A  *  E  F  N  N  H  W  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  Q  R  A  E  V  R  T  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  C  W  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39478" stop="39870"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVQELQLILHDLIAEDMVVNEAFQVAAMIEKLPPSWNDFKNYLKHKRKEMKLEDLVIRLKIEEDNRNAEKKSRKSSTIIGVNIVEEAPTKDKKRKKSNGQKSEQAKKKFKGNCYNCGNAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="47293" PGL_stop="46051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47293" e_stop="46051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="47293" e_stop="46051" e_length="1243"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47293" stop="46584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46718" stop="46081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46678" stop="46051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46678" stop="46103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46628" stop="46076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAAACAGAGAAACGATTGGCCAAAATAGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGAGTTTTTGTACGAAAAAGAAATGAGAAAAGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAACGTGTTTCTCAAAGACCTGACATTGATTATATGGAGACATATTCTCCAGTGGTAGATACAATCACCTTCAGATATCTCATAAATCTGGCTGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAACCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTTTAAAGAAAGGGTACAAAAATGATCCGATTTGTCCCTGCATTTTCATTAAACGGTCGGGGTCTGAATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCATAAAGATCTTTTAGAAGTTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTATCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCATTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGGCATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACAGTGAAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTTTTCTATTCCAATGAATCCAAATCAGAACTTATTGGTTACGCAGATGCAGGGTATTTATCAGATCCATATAAAGCTCGATCACAAACAGGTTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</gDNA_template>
            <first_frame> K  *  C  N  K  M  K  I  L  S  Q  N  L  F  T  N  V  N  R  E  T  I  G  Q  N  R  R  M  Q  F  K  L  N  W  L  H  *  K  N  V  K  F  L  D  R  *  S  E  H  L  K  V  S  S  Q  W  G  T  N  E  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  N  V  F  L  K  D  L  T  L  I  I  W  R  H  I  L  Q  W  *  I  Q  S  P  S  D  I  S  *  I  W  L  F  M  K  N  L  K  C  V  *  W  T  L  S  Q  P  I  Y  M  A  H  W  T  T  T  F  S  *  K  F  L  K  H  S  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  N  F  R  N  L  C  M  D  *  N  N  Q  E  G  C  G  T  I  V  *  V  N  I  F  K  E  R  V  Q  K  *  S  D  L  S  L  H  F  H  *  T  V  G  V  *  I  C  N  N  S  C  V  C  *  *  F  E  H  H  W  H  S  *  R  S  F  R  S  C  *  V  S  E  K  R  I  *  N  E  R  S  R  Q  D  K  I  L  S  W  S  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  S  I  E  Y  S  N  G  G  K  I  A  W  H  Q  Y  R  S  I  S  T  S  R  E  *  *  R  A  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  G  K  I  Q  F  L  P  N  K  K  T  V  K  W  C  *  T  H  T  S  I  S  S  R  D  H  G  H  G  F  F  L  F  Q  *  I  Q  I  R  T  Y  W  L  R  R  C  R  V  F  I  R  S  I  *  S  S  I  T  N  R  L  F  V  Y  M  W  R  H  G  N  I  L  A  I  N  </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  R  L  A  K  I  E  G  C  N  S  S  *  I  G  F  T  R  K  T  *  S  F  W  T  D  N  P  N  T  *  R  Y  Q  A  S  G  V  Q  M  S  F  C  T  K  K  K  *  E  K  *  S  H  E  I  *  G  P  T  R  C  S  T  C  F  S  K  T  *  H  *  L  Y  G  D  I  F  S  S  G  R  Y  N  H  L  Q  I  S  H  K  S  G  C  S  *  K  T  *  N  A  S  N  G  R  C  H  N  L  S  I  W  L  I  G  P  Q  H  F  H  E  N  S  *  S  I  Q  S  A  *  S  I  Q  R  F  K  R  N  L  F  N  K  T  S  E  I  S  V  W  I  E  T  I  R  K  D  V  V  Q  S  S  E  *  I  F  L  K  K  G  Y  K  N  D  P  I  C  P  C  I  F  I  K  R  S  G  S  E  F  V  I  I  V  V  Y  V  D  D  L  N  I  I  G  T  H  K  D  L  L  E  V  V  E  C  L  K  K  E  F  E  M  K  D  L  G  K  T  K  F  Y  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  H  F  Y  M  D  N  S  H  P  L  S  T  P  M  V  V  R  S  L  G  I  N  T  D  P  F  R  P  Q  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  A  N  N  T  R  P  D  I  C  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  Q  *  N  G  V  K  H  I  L  R  Y  L  R  G  T  M  D  M  G  F  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  D  P  Y  K  A  R  S  Q  T  G  Y  L  F  T  C  G  D  T  A  I  S  W  R  S  M </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  P  K  S  V  H  E  C  K  Q  R  N  D  W  P  K  *  K  D  A  I  Q  A  E  L  A  S  L  E  K  R  E  V  F  G  P  I  I  R  T  P  E  G  I  K  P  V  G  Y  K  *  V  F  V  R  K  R  N  E  K  S  E  V  M  R  Y  K  A  R  L  V  A  Q  R  V  S  Q  R  P  D  I  D  Y  M  E  T  Y  S  P  V  V  D  T  I  T  F  R  Y  L  I  N  L  A  V  H  E  K  L  E  M  R  L  M  D  V  V  T  T  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  E  A  F  K  V  P  E  A  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  G  L  K  Q  S  G  R  M  W  Y  N  R  L  S  E  Y  F  *  R  K  G  T  K  M  I  R  F  V  P  A  F  S  L  N  G  R  G  L  N  L  *  *  *  L  C  M  L  M  I  *  T  S  L  A  L  I  K  I  F  *  K  L  L  S  V  *  K  K  N  L  K  *  K  I  S  A  R  Q  N  F  I  L  V  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  S  I  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  R  L  A  S  I  Q  I  H  F  D  L  K  R  M  M  K  S  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  V  Y  W  Q  D  S  V  P  P  Q  Q  K  D  S  E  M  V  L  N  T  Y  F  D  I  F  E  G  P  W  T  W  V  F  S  I  P  M  N  P  N  Q  N  L  L  V  T  Q  M  Q  G  I  Y  Q  I  H  I  K  L  D  H  K  Q  V  I  C  L  H  V  E  T  R  Q  Y  L  G  D  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46749" stop="46240"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLKKGYKNDPICPCIFIKRSGSEFVIIVVYVDDLNIIGTHKDLLEVVECLKKEFEMKDLGKTKFYLGLQIENLSNGILVHQSTYTEKILKHFYMDNSHPLSTPMVVRSLGINTDPFRPQENDEELLGDETPYLSAIGALMYLANNTRPDICFAVSLLARFSSSPTKRQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47114" stop="46740"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFVRKRNEKSEVMRYKARLVAQRVSQRPDIDYMETYSPVVDTITFRYLINLAVHEKLEMRLMDVVTTYLYGSLDHNIFMKIPEAFKVPEAYKDSRETCSIKLQKSLYGLKQSGRMWYNRLSEYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48688" PGL_stop="48209"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48688" e_stop="48209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="48688" e_stop="48209" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48688" stop="48451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48687" stop="48209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATATAGGGGATCGGAGTGTCACGTACCGACACAAGAGGAATAATGAATATGAGGGATCGGAGTGTCACGTACCGACACAAGAGAATTAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAACGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTCGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCGTCCTCAACTCGACAGTAATTCTAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGATAACGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  I  M  N  M  R  D  R  S  V  T  Y  R  H  K  R  I  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  R  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  S  S  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  R  Q  *  F  *  P  V  F  V  T  P  D  L  Q  G  E  I  T  L  L  A  W  T </first_frame>
            <second_frame>  H  E  P  T  R  R  Y  R  G  S  E  C  H  V  P  T  Q  E  E  *  *  I  *  G  I  G  V  S  R  T  D  T  R  E  L  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  S  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  L  L  V  I  C  G  V  Q  Q  T  C  R  R  P  Q  L  D  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  R  *  R  F  *  L  G   </second_frame>
            <third_frame>   T  N  R  H  V  D  I  G  D  R  S  V  T  Y  R  H  K  R  N  N  E  Y  E  G  S  E  C  H  V  P  T  Q  E  N  *  R  *  *  I  L  K  D  V  N  I  L  N  L  T  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  R  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  F  F  L  L  F  V  E  C  S  K  R  A  V  V  L  N  S  T  V  I  L  A  S  L  R  H  T  G  S  S  G  *  D  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48461" stop="48231"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLLLLHVEYHSRFYDITWYILISILSWPMISTQYPCFVLTPTFMFFFLLFVECSKRAVVLNSTVILASLRHTGSSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="48362" PGL_stop="48698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48362" e_stop="48698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="48362" e_stop="48698" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48362" stop="48698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCGACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTATATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  D  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  N  S  L  V  S  V  R  D  T  P  I  P  H  I  H  Y  S  S  C  V  G  T  *  H  S  D  P  L  Y  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  R  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  I  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  I  P  L  V  S  V  R  D  T  P  I  P  Y  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  R  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  V  R  L  S  I  L  T  S  F  K  I  H  Y  L  *  F  S  C  V  G  T  *  H  S  D  P  S  Y  S  L  F  L  L  C  R  Y  V  T  L  R  S  P  I  S  T  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0029C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="50265" PGL_stop="49503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50265" e_stop="49503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="50265" e_stop="49503" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50265" stop="49503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTCGATGGAAAAAGTGAGGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAAGGTGAACAAGTCTTGTTGAAAGTTTCACCCATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTGGGGGAGGTGGCTTATGAGTTAGACTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCGGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAGATACCCACATCTGTTTAAAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTATTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTAATGTAACGACCCGTTTAGTCGTTTTGAGCAGCAGACTTTATTTCTGGAAAAACTGGCAGAAGCGACGGACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGATACTAAAAATCGACTCTCT</gDNA_template>
            <first_frame> G  F  D  G  K  S  E  V  Y  S  R  K  A  S  S  G  A  K  *  T  K  R  I  C  R  S  K  G  *  R  L  R  V  H  G  R  *  T  S  L  V  E  S  F  T  H  E  R  G  D  A  V  W  *  K  G  *  T  K  S  K  V  H  W  T  I  *  S  T  *  A  S  G  G  G  G  L  *  V  R  L  A  S  R  A  V  R  S  T  S  G  I  P  C  V  D  V  E  K  I  P  W  G  W  K  L  H  Y  P  L  G  F  S  F  A  *  *  E  L  V  L  *  G  G  A  C  C  Y  F  R  *  R  S  S  Q  V  E  V  K  R  D  C  I  H  Q  G  A  M  E  E  S  T  G  *  R  S  H  L  G  E  G  G  G  Y  A  R  K  I  P  T  S  V  *  R  F  R  Y  S  F  S  P  L  F  S  L  F  *  S  F  G  D  E  R  W  V  N  W  Y  L  M  *  R  P  V  *  S  F  *  A  A  D  F  I  S  G  K  T  G  R  S  D  G  P  H  D  G  P  S  W  A  R  R  T  V  A  G  S  R  F  K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  </first_frame>
            <second_frame>  D  S  M  E  K  V  R  S  I  Q  E  K  L  L  A  A  Q  S  R  Q  K  E  Y  A  D  R  K  V  R  D  L  E  F  M  E  G  E  Q  V  L  L  K  V  S  P  M  K  G  V  M  R  F  G  K  R  G  K  L  S  P  R  Y  I  G  P  F  E  V  L  K  R  V  G  E  V  A  Y  E  L  D  L  P  P  G  L  S  G  V  H  P  V  F  H  V  S  M  L  K  R  Y  H  G  D  G  N  Y  I  I  R  W  D  S  V  L  L  D  E  N  L  S  Y  E  E  E  P  V  A  I  L  D  R  E  V  R  K  L  R  S  R  E  I  A  S  I  K  V  Q  W  K  N  R  P  V  E  E  A  T  W  E  K  E  A  D  M  R  E  R  Y  P  H  L  F  K  D  S  G  T  P  F  R  P  C  F  P  Y  F  D  R  S  G  T  N  D  G  *  I  G  I  *  C  N  D  P  F  S  R  F  E  Q  Q  T  L  F  L  E  K  L  A  E  A  T  D  P  T  T  D  R  H  G  H  D  G  P  S  Q  G  L  V  S  K  H  L  E  N  L  K  L  D  T  K  N  R  L  S </second_frame>
            <third_frame>   I  R  W  K  K  *  G  L  F  K  K  S  F  *  R  R  K  V  D  K  K  N  M  Q  I  E  R  L  E  T  *  S  S  W  K  V  N  K  S  C  *  K  F  H  P  *  K  G  *  C  G  L  V  K  G  V  N  *  V  Q  G  T  L  D  H  L  K  Y  L  S  E  W  G  R  W  L  M  S  *  T  C  L  Q  G  C  P  E  Y  I  R  Y  S  M  C  R  C  *  K  D  T  M  G  M  E  T  T  L  S  V  G  I  Q  F  C  L  M  R  T  C  L  M  R  R  S  L  L  L  F  *  I  E  K  F  A  S  *  G  Q  E  R  L  H  P  S  R  C  N  G  R  I  D  R  L  K  K  P  L  G  R  R  R  R  I  C  E  K  D  T  H  I  C  L  K  I  Q  V  L  L  F  A  L  V  F  L  I  L  I  V  R  G  R  T  M  G  K  L  V  S  N  V  T  T  R  L  V  V  L  S  S  R  L  Y  F  W  K  N  W  Q  K  R  R  T  P  R  R  T  V  M  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  I  L  K  I  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50264" stop="49680"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSMEKVRSIQEKLLAAQSRQKEYADRKVRDLEFMEGEQVLLKVSPMKGVMRFGKRGKLSPRYIGPFEVLKRVGEVAYELDLPPGLSGVHPVFHVSMLKRYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVRKLRSREIASIKVQWKNRPVEEATWEKEADMRERYPHLFKDSGTPFRPCFPYFDRSGTNDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="50326" PGL_stop="50502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50326" e_stop="50502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="50326" e_stop="50502" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50326" stop="50502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0029C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="51807" PGL_stop="54516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51807" e_stop="54516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="51807" e_stop="54516" e_length="2710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51807" stop="52519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51807" stop="52402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51807" stop="52332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51878" stop="52557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51878" stop="52236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52396" stop="53156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52396" stop="53055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53005" stop="53563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53009" stop="53772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53089" stop="53878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53091" stop="53624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53165" stop="53862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53726" stop="54445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53729" stop="54392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54084" stop="54516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATATCTCATTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCAGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGAGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCATCGAAGGCACTTGGGTAGTGTCGTCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAAGGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAAGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTCCAACTACCACAGACTCACCCACCGGAGTAGAGACACGGATAGGCATACCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACACTGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGTTATTAGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGGTCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGAGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAATTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTTGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAACTCGTGACAGTCAACCAGAAAATCATAGGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTAAAATCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGTTCGTCCTCTCCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTCACCGTTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  S  H  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  E  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  Q  R  K  E  T  M  R  T  G  L  G  V  *  S  P  S  H  T  N  G  S  V  P  S  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  P  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  P  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  H  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  L  L  P  R  P  P  R  P  P  E  K  R  P  L  P  *  P  P  L  P  L  V  I  R  G  L  *  L  G  L  G  Q  F  L  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  V  I  C  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  F  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  R  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  N  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  K  I  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  V  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  V  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  T  V  V  L  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  I  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  Q  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  R  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  S  K  A  L  G  *  C  R  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  K  E  R  R  R  C  G  P  D  W  E  C  S  H  P  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  R  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  R  H  G  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  T  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  Y  Y  L  D  H  H  A  L  Q  K  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  C  N  L  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  R  S  Y  A  P  R  R  S  V  D  R  S  E  E  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  L  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  L  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  D  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  T  R  D  S  Q  P  E  N  H  R  H  P  P  I  Q  H  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  L  L  K  S  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  G  E  S  L  P  *  Y  Q  M  G  *  V  F  V  L  S  L  *  R  T  S  S  H  D  L  Y  H  G  P  S  P  L  F  F </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  W  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  I  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  R  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  H  R  R  H  L  G  S  V  V  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  P  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  H  *  R  V  C  P  K  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  V  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  S  N  Y  H  R  L  T  H  R  S  R  D  T  D  R  H  T  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  L  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  P  S  R  K  T  A  S  T  M  T  T  S  T  S  S  Y  *  G  S  V  T  W  S  G  T  I  S  P  N  M  S  N  L  P  T  S  I  T  F  F  G  V  G  H  M  P  L  G  E  V  L  T  G  L  R  R  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  I  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  *  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  G  I  L  R  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  F  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  R  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  G  S  H  C  P  S  I  R  W  A  R  C  S  S  S  P  S  R  G  R  P  P  T  T  S  T  T  A  P  H  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52071" stop="52310"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPISHSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54293" stop="54514"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWRFLILHLFSFPILPFSYYFLSRWGSHCPSIRWARCSSSPSRGRPPTTSTTAPHRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54318" stop="54515"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGVSSFCTCSVSPSSPSLITSSVGGGVTALVSDGLGVRPLPLEDVLPRPLPRPLTVVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54038" stop="54238"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIIGILRFSTLEDRRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52003" stop="52200"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53547" stop="53741"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRSLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="53822" PGL_stop="52379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53822" e_stop="53650"/>
            <exon e_start="52905" e_stop="52379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.084" e_score="0.913"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="53822" e_stop="53650" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.084">
            <gDNA_intron_boundary i_start="53649" i_stop="52906" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="52905" e_stop="52379" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53822" stop="53650"/>
              <exon start="52905" stop="52379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGACGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCTTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCCTTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGACGACACTACCCAAGTGCCTTCGATGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCTCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R :   N  G  *  F  *  R  D  S  G  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  S  Q  S  G  P  H  R  L  L  S  L  C  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  Q  G  R  H  Y  P  S  A  F  D  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  L  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  L  G  T  D  P  L  V  W  E  G  D  Y  T  P  N  P  V  R  I  V  S  F  L  C  A  R  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  M  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  S  R  S  *  E  S  *  K  H  N  F  K  S  Y  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  G  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  M  I  L  T  *  F  W  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  G  K  *  L  V  K  G  V  *  L  S  W  H  I  S  R  T  T  L  P  K  C  L  R  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  I  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53821" stop="53650"/>
                    <exon start="52905" stop="52646"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKLGTDPLVWEGDYTPNPVRIVSFLCARKMISKGCLAFLAHLKDDTTQVPSMSRFQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52718" stop="52380"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVFSFLGTSQGRHYPSAFDESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMALAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="54809" PGL_stop="54523"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54809" e_stop="54523"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="54809" e_stop="54523" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54809" stop="54523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGATCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTCTCCTTGAGAGGCTATAAGACTTTAGGAAAAATTTCACTCTTTCATTCTCTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTGGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACGGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  I  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  L  L  E  R  L  *  D  F  R  K  N  F  T  L  S  F  S  L  S  C  Y  Y  L  S  P  I  G  I  W  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  V  N  T  N  T  G  Q  T  R  N  N  G  A  S  H  W  G  C   </first_frame>
            <second_frame>  *  V  R  *  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  I  S  L  F  H  S  L  F  R  A  T  T  *  V  Q  L  V  S  G  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  S  T  P  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </second_frame>
            <third_frame>   R  F  V  D  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  S  P  *  E  A  I  R  L  *  E  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  R  S  Q  P  L  G  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0029C01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="57824" PGL_stop="57279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57824" e_stop="57279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="57824" e_stop="57279" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57824" stop="57279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57714" stop="57346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGACGTATGCCTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAGAAATATTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAAAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAAAAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACTGGTTGGGCCATCTCGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGGCACACCTT</gDNA_template>
            <first_frame> K  S  P  V  V  S  W  I  Q  D  E  *  W  R  R  M  P  S  *  *  C  Y  N  A  Y  N  I  K  R  K  E  I  F  F  *  F  G  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  K  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  K  K  V  Y  *  F  *  *  F  Y  H  L  A  *  L  V  G  P  S  R  I  *  Y  D  A  Q  N  H  *  E  F  T  W  A  H  L </first_frame>
            <second_frame>  N  P  Q  L  S  V  G  F  K  M  S  N  G  D  V  C  L  L  D  S  A  T  T  H  T  I  L  K  E  K  K  Y  F  S  N  L  V  M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  K  K  K  I  V  H  E  K  L  P  A  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  K  K  R  F  T  N  F  N  D  F  I  I  W  H  D  W  L  G  H  L  G  F  N  M  M  R  K  I  I  E  N  S  H  G  H  T   </second_frame>
            <third_frame>   I  P  S  C  Q  L  D  S  R  *  V  M  E  T  Y  A  F  L  I  V  L  Q  R  I  Q  Y  *  K  K  R  N  I  F  L  I  W  L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  K  K  G  L  L  I  L  M  I  L  S  F  G  M  T  G  W  A  I  S  D  L  I  *  C  A  K  S  L  R  I  H  M  G  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57823" stop="57281"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPQLSVGFKMSNGDVCLLDSATTHTILKEKKYFSNLVMKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETANEGKVEYLYITTINVKKKIVHEKLPAFSSGLYYTSISTVESHAVVKKRFTNFNDFIIWHDWLGHLGFNMMRKIIENSHGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="59122" PGL_stop="58359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59122" e_stop="58359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="59122" e_stop="58359" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59122" stop="58359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACGTTATCAGCACGAGATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTACTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTAAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCCGACGGTGAAAGATCCACTTGAATTGTGGACTGATTTAAACGGGAGATATGACCACCTAAAGGCAACAATGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACACGTTGGAAAAGACACTTACTACTTTTCATGCCTTGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTCAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATATGGTGGAATCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGATATAATAATGCACGGGGACGTGGAAA</gDNA_template>
            <first_frame> N  T  L  S  A  R  D  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  S  L  I  I  F  I  M  S  N  L  S  K  L  E  F  V  A  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  A  T  K  G  L  D  A  T  I  T  Q  G  N  E  A  S  S  K  D  K  A  K  A  M  I  F  L  R  H  H  L  D  E  G  L  K  I  E  Y  P  T  V  K  D  P  L  E  L  W  T  D  L  N  G  R  Y  D  H  L  K  A  T  M  L  P  R  A  R  Y  E  W  M  H  L  R  F  Q  D  F  K  T  V  I  E  Y  N  S  A  V  F  R  I  T  S  Q  L  K  L  C  G  E  T  I  K  D  E  D  T  L  E  K  T  L  T  T  F  H  A  L  N  V  I  L  Q  Q  Q  Y  R  E  K  G  F  Q  K  Y  S  Q  L  I  S  C  L  L  V  A  E  Q  H  N  A  L  L  M  K  N  H  E  A  R  P  T  G  A  A  P  L  P  E  A  N  M  V  E  S  R  D  Q  S  E  V  K  R  D  D  H  R  G  Y  N  N  A  R  G  R  G   </first_frame>
            <second_frame>  T  R  Y  Q  H  E  I  A  T  C  K  G  T  I  *  I  F  L  F  N  S  H  I  L  S  *  F  S  L  C  R  I  Y  P  N  L  S  L  W  H  *  I  F  L  E  R  I  I  F  H  G  Y  S  M  L  R  F  T  W  L  L  K  V  L  M  P  L  L  L  R  E  M  K  H  R  V  K  I  R  R  R  L  *  F  S  F  V  I  I  L  M  R  A  *  R  L  N  I  R  R  *  K  I  H  L  N  C  G  L  I  *  T  G  D  M  T  T  *  R  Q  Q  C  C  Q  E  L  V  M  S  G  C  I  Y  G  F  K  I  L  R  P  *  L  N  T  T  L  L  Y  S  G  *  P  P  S  *  N  Y  V  G  R  L  *  K  M  R  T  R  W  K  R  H  L  L  L  F  M  P  *  M  *  Y  C  S  S  N  I  V  K  R  V  F  R  N  I  L  N  *  S  H  V  F  W  W  L  S  N  I  M  L  F  *  *  K  I  M  K  L  V  P  L  E  L  L  H  Y  R  R  Q  I  W  W  N  H  V  I  N  L  K  *  K  E  M  I  I  G  D  I  I  M  H  G  D  V  E  </second_frame>
            <third_frame>   H  V  I  S  T  R  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  F  S  H  N  F  H  Y  V  E  F  I  Q  T  *  V  C  G  I  R  Y  F  W  K  E  L  S  F  M  G  T  R  C  *  D  S  L  G  Y  *  R  S  *  C  H  Y  Y  S  G  K  *  S  I  E  *  R  *  G  E  G  Y  D  F  P  S  S  S  S  *  *  G  P  E  D  *  I  S  D  G  E  R  S  T  *  I  V  D  *  F  K  R  E  I  *  P  P  K  G  N  N  V  A  K  S  S  L  *  V  D  A  F  T  V  S  R  F  *  D  R  N  *  I  Q  L  C  C  I  Q  D  N  L  P  V  E  I  M  W  G  D  Y  K  R  *  G  H  V  G  K  D  T  Y  Y  F  S  C  L  E  C  D  I  A  A  A  I  S  *  K  G  F  S  E  I  F  S  T  N  L  M  S  F  G  G  *  A  T  *  C  S  F  N  E  K  S  *  S  S  S  H  W  S  C  S  I  T  G  G  K  Y  G  G  I  T  *  S  I  *  S  K  K  R  *  S  S  G  I  *  *  C  T  G  T  W  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59062" stop="58361"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTYSLIIFIMSNLSKLEFVALDISGKNYLSWVLDAEIHLATKGLDATITQGNEASSKDKAKAMIFLRHHLDEGLKIEYPTVKDPLELWTDLNGRYDHLKATMLPRARYEWMHLRFQDFKTVIEYNSAVFRITSQLKLCGETIKDEDTLEKTLTTFHALNVILQQQYREKGFQKYSQLISCLLVAEQHNALLMKNHEARPTGAAPLPEANMVESRDQSEVKRDDHRGYNNARGRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="73702" PGL_stop="65742"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73701" e_stop="73359"/>
            <exon e_start="72083" e_stop="71850"/>
            <exon e_start="71597" e_stop="71535"/>
            <exon e_start="70304" e_stop="70233"/>
            <exon e_start="70021" e_stop="69914"/>
            <exon e_start="69804" e_stop="69724"/>
            <exon e_start="69014" e_stop="68961"/>
            <exon e_start="68825" e_stop="68700"/>
            <exon e_start="68615" e_stop="68526"/>
            <exon e_start="68425" e_stop="68303"/>
            <exon e_start="68195" e_stop="68088"/>
            <exon e_start="67272" e_stop="67159"/>
            <exon e_start="67070" e_stop="67014"/>
            <exon e_start="66868" e_stop="66794"/>
            <exon e_start="66095" e_stop="65742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.981" e_score="0.991"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73701" e_stop="73359" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.957">
            <gDNA_intron_boundary i_start="73358" i_stop="72084" i_length="1275"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72083" e_stop="71850" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71597" e_stop="71535" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.892">
            <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70304" e_stop="70233" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.955" acc_prob="0.990">
            <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70021" e_stop="69914" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69804" e_stop="69724" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="0.964">
            <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69014" e_stop="68961" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68825" e_stop="68700" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.859" acc_prob="0.882">
            <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="68615" e_stop="68526" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.802" acc_prob="0.974">
            <gDNA_intron_boundary i_start="68525" i_stop="68426" i_length="100"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68425" e_stop="68303" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.944" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68302" i_stop="68196" i_length="107"/>
          </intron>
          <exon e_serial="11" e_score="0.991">
            <gDNA_exon_boundary e_start="68195" e_stop="68088" e_length="108"/>
          </exon>
          <intron i_serial="11" don_prob="0.990" acc_prob="0.981">
            <gDNA_intron_boundary i_start="68087" i_stop="67273" i_length="815"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="67272" e_stop="67159" e_length="114"/>
          </exon>
          <intron i_serial="12" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="67070" e_stop="67014" e_length="57"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="66868" e_stop="66794" e_length="75"/>
          </exon>
          <intron i_serial="14" don_prob="0.934" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="66095" e_stop="65742" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73701" stop="73359"/>
              <exon start="72083" stop="71944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73569" stop="73359"/>
              <exon start="72083" stop="71944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73562" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73559" stop="73359"/>
              <exon start="72083" stop="71963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73557" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73557" stop="73359"/>
              <exon start="72083" stop="71997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73533" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73509" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73477" stop="73359"/>
              <exon start="72083" stop="71925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73475" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73451" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73450" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73450" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73413" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73411" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73411" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73411" stop="73359"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72050" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72048" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71948" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71948" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71919" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69931" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68303"/>
              <exon start="68195" stop="68125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68791" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68303"/>
              <exon start="68195" stop="68088"/>
              <exon start="67272" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68337" stop="68303"/>
              <exon start="68195" stop="68088"/>
              <exon start="67272" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578425" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67268" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67189" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67189" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67165" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67165" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67165" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67041" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294719" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67041" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66867" stop="66794"/>
              <exon start="66095" stop="65755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTACTACAAAACAATCTTTGTATAGTTGTGTGGCTGTGGTACAAATAAACCATCTTGAGATTCCATTGGAAGAGGTTAAAAAAAAAAGACTATTTCATTTTTTTATAGTTGTTATCTTTGTTGTTGGGAGAATATTTACAATTATTACAGCAACATTAGAATTTCAAGATTTGGATGTTGCCTTCTTTTCAACTTACCATATATTTGTCCAAATTTTTGAGGATTTCTAAGCTGCTGTAATCAATCTTTTTTGACCCCCAAACAACAAAGGCTGCAACTTTCATACTTCATCTTTATCTTTATCTTGGCCAACACCCCATTTCAAAATTTCAGCTCAAA : TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG : ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAG : GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT : GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG : CCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG : GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG : GTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAA : ATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACA : CGTATCACCATCTCAGAAATTCTGGAGGATGAGTGGTTCAAGAAAGATTATAAATCTCCCATTTTTAATGAGAAAGGAGATGCCAACCTGGATGATGTTGAAGCTGTCTTCAAGGATTCTGAA : GAACATCATGTAACAGAGAAAAAGGAAGAGCAGCCAACTCCCATGAATGCATTCGAGTTGATTTCAATGTCAAAAGGACTCAACCTTGGGAATCTCTTCGATGAACAG : GAATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAG : ATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG : GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG : TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAATATCATAATCCT</gDNA_template>
            <first_frame> S  I  T  T  K  Q  S  L  Y  S  C  V  A  V  V  Q  I  N  H  L  E  I  P  L  E  E  V  K  K  K  R  L  F  H  F  F  I  V  V  I  F  V  V  G  R  I  F  T  I  I  T  A  T  L  E  F  Q  D  L  D  V  A  F  F  S  T  Y  H  I  F  V  Q  I  F  E  D  F  *  A  A  V  I  N  L  F  *  P  P  N  N  K  G  C  N  F  H  T  S  S  L  S  L  S  W  P  T  P  H  F  K  I  S  A  Q   : I  K  G  S  L  R  R  I  T  P  A  F  F  K  G  L  C  K  Y  L  S  Y  E  S  G  K  N  Q  A  Q  S  W  *  I  *  N  G  K  D  N  W  *  G  N  I  C  *  S  *  V  C  E  E  F  G  D  R  R  S  C  S  D  Q  D  S  *  *  G  *  G  P  *  A  Q  N  G  *  A   : D  K  A  G  D  S  Y  N  E  V  N  *  T  S  T  C  R  S  V  I  R   : G  V  G  *  Q  D  K  D  I  H  C  S  G  V  R  Y  R  R  R  A  L  *  Q  N   : C  K  S  W  T  D  A  *  K  R  S  K  E  I  L  S  A  A  Y  *  C  C  *  L  L  S  *  Q  G  S  L  P  *  R  F  K   : A  *  E  F  T  L  G  C  Q  W  K  P  Q  G  F  *  F  W  I  E  C  S  V  P  A  S  Q   : G  *  W  L  T  P  H  H  M  W  N  S  Q  L  C  C  S  *   : G  T  Q  R  S  W  I  *  W  Y  N  R  G  S  V  V  V  R  S  H  T  L  C  I  A  C  R  L  L  A  F  *  *  L  Q  S  Y  *  P  V  *  K   : N  L  C  C  *  I  Y  M  S  S  L  D  V  F  W  C  Y  E  V  N  Y  S  H  L  G  S  E  P  Y  D   : T  Y  H  H  L  R  N  S  G  G  *  V  V  Q  E  R  L  *  I  S  H  F  *  *  E  R  R  C  Q  P  G  *  C  *  S  C  L  Q  G  F  *   : R  T  S  C  N  R  E  K  G  R  A  A  N  S  H  E  C  I  R  V  D  F  N  V  K  R  T  Q  P  W  E  S  L  R  *  T   : G  I  *  E  R  N  K  V  H  I  *  M  L  G  Q  *  N  Y  Q  *  D  *  R  S  C  K  A  P  R  F  *  C  S  Q  K  E  L  Q   : D  E  T  *  K  C  Q  S  W  K  K  R  E  P  *  C  C  H  *   : G  I  S  S  C  P  F  S  S  Y  G  *  S  P  K  G  K  R  R  Y  F  G  I  P  Q   : V  L  Q  E  S  F  D  *  S  R  G  C  S  V  E  N  *  R  G  H  A  S  *  V  V  L  L  P  *  T  A  I  A  *  A  F  A  G  P  T  I  C  V  K  N  F  A  T  C  F  F  L  S  L  F  F  V  I  W  S  V  L  C  S  G  T  F  F  S  H  E  L  M  A  N  C  S  I  S  S  W  S  R  T  F  V  P  I  *  F  D  L  Q  F  V  *  Q  I  Y  T  F  E  K  C  I  Q  L  F  S  P  L  K  K  K  I  S  *  S  </first_frame>
            <second_frame>  Q  L  L  Q  N  N  L  C  I  V  V  W  L  W  Y  K  *  T  I  L  R  F  H  W  K  R  L  K  K  K  D  Y  F  I  F  L  *  L  L  S  L  L  L  G  E  Y  L  Q  L  L  Q  Q  H  *  N  F  K  I  W  M  L  P  S  F  Q  L  T  I  Y  L  S  K  F  L  R  I  S  K  L  L  *  S  I  F  F  D  P  Q  T  T  K  A  A  T  F  I  L  H  L  Y  L  Y  L  G  Q  H  P  I  S  K  F  Q  L  K  :  *  K  V  L  *  E  G  L  R  L  H  S  L  K  D  C  A  S  I  S  V  M  N  Q  A  K  I  K  R  R  V  G  K  Y  E  M  G  R  T  I  G  E  G  T  F  A  K  V  K  F  A  R  N  S  E  T  G  E  A  V  A  I  K  I  L  D  K  D  K  V  L  K  H  K  M  A  E  Q  :  I  K  R  E  I  A  T  M  K  L  I  R  H  P  H  V  V  Q  L  Y  E  :  V  L  A  S  K  T  K  I  F  I  V  L  E  F  V  T  G  G  E  L  F  D  K  I  :  V  N  H  G  R  M  H  E  K  E  A  R  K  Y  F  Q  Q  L  I  N  A  V  D  Y  C  H  S  R  G  V  Y  H  R  D  L  K  :  P  E  N  L  L  L  D  V  N  G  N  L  K  V  S  D  F  G  L  S  A  L  S  Q  Q  V  R  :  D  D  G  L  L  H  T  T  C  G  T  P  N  Y  V  A  P  E  :  V  L  N  D  H  G  Y  D  G  T  T  A  D  L  W  S  C  G  V  I  L  F  V  L  L  A  G  Y  L  P  F  D  D  S  N  L  I  N  L  Y  K  K  :  I  S  A  A  E  F  T  C  P  P  W  M  S  F  G  A  M  K  L  I  T  R  I  L  D  P  N  P  M  T  :  R  I  T  I  S  E  I  L  E  D  E  W  F  K  K  D  Y  K  S  P  I  F  N  E  K  G  D  A  N  L  D  D  V  E  A  V  F  K  D  S  E  :  E  H  H  V  T  E  K  K  E  E  Q  P  T  P  M  N  A  F  E  L  I  S  M  S  K  G  L  N  L  G  N  L  F  D  E  Q  :  E  F  K  R  E  T  R  F  T  S  K  C  S  A  N  E  I  I  S  K  I  E  E  A  A  K  P  L  G  F  D  V  H  K  K  N  Y  K  :  M  R  L  E  N  V  K  A  G  R  K  G  N  L  N  V  A  T  E  :  V  F  Q  V  A  P  S  L  H  M  V  E  V  R  K  A  K  G  D  T  L  E  F  H  K  :  F  Y  K  N  L  S  T  S  L  E  D  V  V  W  K  T  E  E  D  M  Q  A  R  *  Y  Y  Y  H  E  L  Q  L  H  K  L  L  L  V  P  Q  S  V  *  K  T  L  Q  L  V  S  F  F  P  F  F  L  S  F  G  L  F  F  V  V  G  L  F  S  P  M  S  *  W  P  T  V  L  F  H  H  G  V  G  L  L  F  L  F  D  L  I  C  S  L  Y  N  K  Y  T  L  L  R  N  V  Y  N  S  S  A  P  S  R  K  K  Y  H  N  P </second_frame>
            <third_frame>   N  Y  Y  K  T  I  F  V  *  L  C  G  C  G  T  N  K  P  S  *  D  S  I  G  R  G  *  K  K  K  T  I  S  F  F  Y  S  C  Y  L  C  C  W  E  N  I  Y  N  Y  Y  S  N  I  R  I  S  R  F  G  C  C  L  L  F  N  L  P  Y  I  C  P  N  F  *  G  F  L  S  C  C  N  Q  S  F  L  T  P  K  Q  Q  R  L  Q  L  S  Y  F  I  F  I  F  I  L  A  N  T  P  F  Q  N  F  S  S  N :   K  R  F  F  K  K  D  Y  A  C  I  L  *  R  T  V  Q  V  S  Q  L  *  I  R  Q  K  S  S  A  E  L  V  N  M  K  W  E  G  Q  L  V  R  E  H  L  L  K  L  S  L  R  G  I  R  R  Q  E  K  L  *  R  S  R  F  L  I  R  I  R  S  L  S  T  K  W  L  S  R :   *  S  G  R  *  L  Q  *  S  *  L  D  I  H  M  S  F  S  Y  T  R :   C  W  L  A  R  Q  R  Y  S  L  F  W  S  S  L  Q  A  E  S  S  L  T  K  L :   *  I  M  D  G  C  M  K  K  K  Q  G  N  T  F  S  S  L  L  M  L  L  I  I  V  I  A  G  E  S  T  I  E  I  *  S :   L  R  I  Y  S  W  M  S  M  E  T  S  R  F  L  I  L  D  *  V  L  C  P  S  K  S  G :   M  M  A  Y  S  T  P  H  V  E  L  P  T  M  L  L  L  R :   Y  S  T  I  M  D  M  M  V  Q  P  R  I  C  G  R  A  E  S  Y  S  L  Y  C  L  Q  V  T  C  L  L  M  T  P  I  L  L  T  C  I  K  K :   S  L  L  L  N  L  H  V  L  L  G  C  L  L  V  L  *  S  *  L  L  A  S  W  I  R  T  L  *  H :   V  S  P  S  Q  K  F  W  R  M  S  G  S  R  K  I  I  N  L  P  F  L  M  R  K  E  M  P  T  W  M  M  L  K  L  S  S  R  I  L  K :   N  I  M  *  Q  R  K  R  K  S  S  Q  L  P  *  M  H  S  S  *  F  Q  C  Q  K  D  S  T  L  G  I  S  S  M  N  R :   N  L  R  E  K  Q  G  S  H  L  N  A  R  P  M  K  L  S  V  R  L  K  K  L  Q  S  P  S  V  L  M  F  T  K  R  T  T  R :   *  D  L  K  M  S  K  L  E  E  K  G  T  L  M  L  P  L  R :   Y  F  K  L  P  L  L  F  I  W  L  K  S  E  R  Q  K  E  I  L  W  N  S  T  S :   S  T  R  I  F  R  L  V  *  R  M  *  C  G  K  L  K  R  T  C  K  L  G  S  I  T  T  M  N  C  N  C  I  S  F  C  W  S  H  N  L  C  K  K  L  C  N  L  F  L  S  F  P  F  F  C  H  L  V  C  S  L  *  W  D  F  F  L  P  *  A  N  G  Q  L  F  Y  F  I  M  E  *  D  F  C  S  Y  L  I  *  F  A  V  C  I  T  N  I  H  F  *  E  M  Y  T  T  L  Q  P  P  Q  E  K  N  I  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72068" stop="71850"/>
                    <exon start="71597" stop="71535"/>
                    <exon start="70304" stop="70233"/>
                    <exon start="70021" stop="69914"/>
                    <exon start="69804" stop="69724"/>
                    <exon start="69014" stop="68961"/>
                    <exon start="68825" stop="68700"/>
                    <exon start="68615" stop="68526"/>
                    <exon start="68425" stop="68303"/>
                    <exon start="68195" stop="68088"/>
                    <exon start="67272" stop="67159"/>
                    <exon start="67070" stop="67014"/>
                    <exon start="66868" stop="66794"/>
                    <exon start="66095" stop="66024"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1359</number_coding_nucleotides>
                  <number_encoded_amino_acids>453</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGLRLHSLKDCASISVMNQAKIKRRVGKYEMGRTIGEGTFAKVKFARNSETGEAVAIKILDKDKVLKHKMAEQIKREIATMKLIRHPHVVQLYEVLASKTKIFIVLEFVTGGELFDKIVNHGRMHEKEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDVNGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDHGYDGTTADLWSCGVILFVLLAGYLPFDDSNLINLYKKISAAEFTCPPWMSFGAMKLITRILDPNPMTRITISEILEDEWFKKDYKSPIFNEKGDANLDDVEAVFKDSEEHHVTEKKEEQPTPMNAFELISMSKGLNLGNLFDEQEFKRETRFTSKCSANEIISKIEEAAKPLGFDVHKKNYKMRLENVKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73701" stop="73468"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITTKQSLYSCVAVVQINHLEIPLEEVKKKRLFHFFIVVIFVVGRIFTIITATLEFQDLDVAFFSTYHIFVQIFEDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72715" e_stop="71850"/>
            <exon e_start="71597" e_stop="71535"/>
            <exon e_start="70304" e_stop="70233"/>
            <exon e_start="70021" e_stop="69914"/>
            <exon e_start="69804" e_stop="69724"/>
            <exon e_start="69014" e_stop="68961"/>
            <exon e_start="68825" e_stop="68700"/>
            <exon e_start="68615" e_stop="68526"/>
            <exon e_start="68425" e_stop="68303"/>
            <exon e_start="68195" e_stop="68088"/>
            <exon e_start="67272" e_stop="67159"/>
            <exon e_start="67070" e_stop="67014"/>
            <exon e_start="66868" e_stop="66794"/>
            <exon e_start="66095" e_stop="65742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.980"/>
          <exon-intron don_prob="0.952" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.981" e_score="0.991"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="72715" e_stop="71850" e_length="866"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71597" e_stop="71535" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.892">
            <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70304" e_stop="70233" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.990">
            <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70021" e_stop="69914" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69804" e_stop="69724" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.964">
            <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69014" e_stop="68961" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68825" e_stop="68700" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.859" acc_prob="0.882">
            <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68615" e_stop="68526" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.802" acc_prob="0.974">
            <gDNA_intron_boundary i_start="68525" i_stop="68426" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="68425" e_stop="68303" e_length="123"/>
          </exon>
          <intron i_serial="9" don_prob="0.944" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68302" i_stop="68196" i_length="107"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="68195" e_stop="68088" e_length="108"/>
          </exon>
          <intron i_serial="10" don_prob="0.990" acc_prob="0.981">
            <gDNA_intron_boundary i_start="68087" i_stop="67273" i_length="815"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67272" e_stop="67159" e_length="114"/>
          </exon>
          <intron i_serial="11" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="67070" e_stop="67014" e_length="57"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="66868" e_stop="66794" e_length="75"/>
          </exon>
          <intron i_serial="13" don_prob="0.934" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="66095" e_stop="65742" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72715" stop="71971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72714" stop="72142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72050" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72048" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71948" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71948" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71919" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69931" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68303"/>
              <exon start="68195" stop="68125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68791" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68303"/>
              <exon start="68195" stop="68088"/>
              <exon start="67272" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68337" stop="68303"/>
              <exon start="68195" stop="68088"/>
              <exon start="67272" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578425" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67268" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67189" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67189" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67165" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67165" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67165" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67041" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294719" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67041" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66867" stop="66794"/>
              <exon start="66095" stop="65755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCCCCTCCTCCTTAAACAAATAGCAGAACTGAATAAACAAACTTGTGTTTTTTCTTATTCATTTCTGTTATCCTTATTGTCCCTTCCAAGATATACCTTCTAACTTTTCCTATTTCAAAAGGAAGTAAGAAAGGTCGAAAGTTCTTGTTAGGGACCTCTTTTGTTTAACTTTCTAGCACTTTGATTGTTGTGGTATTTTGTTGTAGTGACTACTCCTTTTATGTATTCTTTCTTGAACATTTTGTCTTGGCTTCTTCTCTCTCCCTATGTTTTCTTTTTTTCGAACTGCTTTTACTTGAGCCGAGGGTGTATTGGAAGCAACCTCTCGATCTCCTAAGGTAGGGGTAAGGTCTGTCTACAGACTCCACTTCCCAGACTGGGCATGTTGTTGGTGGAAGAAGCGATTATGATGGAAACTTCCTTCAGGAATAAATCCATCACTCGTTCCACTGTCAAGCTGCAAGTTGGGGTTTCTTTTGATGGTGCAGTTAGTCAAGTTGTGTTGAAATATCAATTTTATAATTTTTTGTGATGGGTCTTGGAATTCTGTGAGTGCATGAAATAAACATAAAGATTAGTATTTTATGTCAGGAACTCAGATGTCTTATGGATGTTTTAATCATTGTGCAGTAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG : ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAG : GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT : GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG : CCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG : GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG : GTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAA : ATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACA : CGTATCACCATCTCAGAAATTCTGGAGGATGAGTGGTTCAAGAAAGATTATAAATCTCCCATTTTTAATGAGAAAGGAGATGCCAACCTGGATGATGTTGAAGCTGTCTTCAAGGATTCTGAA : GAACATCATGTAACAGAGAAAAAGGAAGAGCAGCCAACTCCCATGAATGCATTCGAGTTGATTTCAATGTCAAAAGGACTCAACCTTGGGAATCTCTTCGATGAACAG : GAATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAG : ATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG : GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG : TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAATATCATAATCCT</gDNA_template>
            <first_frame> L  P  L  L  L  K  Q  I  A  E  L  N  K  Q  T  C  V  F  S  Y  S  F  L  L  S  L  L  S  L  P  R  Y  T  F  *  L  F  L  F  Q  K  E  V  R  K  V  E  S  S  C  *  G  P  L  L  F  N  F  L  A  L  *  L  L  W  Y  F  V  V  V  T  T  P  F  M  Y  S  F  L  N  I  L  S  W  L  L  L  S  P  Y  V  F  F  F  S  N  C  F  Y  L  S  R  G  C  I  G  S  N  L  S  I  S  *  G  R  G  K  V  C  L  Q  T  P  L  P  R  L  G  M  L  L  V  E  E  A  I  M  M  E  T  S  F  R  N  K  S  I  T  R  S  T  V  K  L  Q  V  G  V  S  F  D  G  A  V  S  Q  V  V  L  K  Y  Q  F  Y  N  F  L  *  W  V  L  E  F  C  E  C  M  K  *  T  *  R  L  V  F  Y  V  R  N  S  D  V  L  W  M  F  *  S  L  C  S  K  R  F  F  K  K  D  Y  A  C  I  L  *  R  T  V  Q  V  S  Q  L  *  I  R  Q  K  S  S  A  E  L  V  N  M  K  W  E  G  Q  L  V  R  E  H  L  L  K  L  S  L  R  G  I  R  R  Q  E  K  L  *  R  S  R  F  L  I  R  I  R  S  L  S  T  K  W  L  S  R :   *  S  G  R  *  L  Q  *  S  *  L  D  I  H  M  S  F  S  Y  T  R :   C  W  L  A  R  Q  R  Y  S  L  F  W  S  S  L  Q  A  E  S  S  L  T  K  L :   *  I  M  D  G  C  M  K  K  K  Q  G  N  T  F  S  S  L  L  M  L  L  I  I  V  I  A  G  E  S  T  I  E  I  *  S :   L  R  I  Y  S  W  M  S  M  E  T  S  R  F  L  I  L  D  *  V  L  C  P  S  K  S  G :   M  M  A  Y  S  T  P  H  V  E  L  P  T  M  L  L  L  R :   Y  S  T  I  M  D  M  M  V  Q  P  R  I  C  G  R  A  E  S  Y  S  L  Y  C  L  Q  V  T  C  L  L  M  T  P  I  L  L  T  C  I  K  K :   S  L  L  L  N  L  H  V  L  L  G  C  L  L  V  L  *  S  *  L  L  A  S  W  I  R  T  L  *  H :   V  S  P  S  Q  K  F  W  R  M  S  G  S  R  K  I  I  N  L  P  F  L  M  R  K  E  M  P  T  W  M  M  L  K  L  S  S  R  I  L  K :   N  I  M  *  Q  R  K  R  K  S  S  Q  L  P  *  M  H  S  S  *  F  Q  C  Q  K  D  S  T  L  G  I  S  S  M  N  R :   N  L  R  E  K  Q  G  S  H  L  N  A  R  P  M  K  L  S  V  R  L  K  K  L  Q  S  P  S  V  L  M  F  T  K  R  T  T  R :   *  D  L  K  M  S  K  L  E  E  K  G  T  L  M  L  P  L  R :   Y  F  K  L  P  L  L  F  I  W  L  K  S  E  R  Q  K  E  I  L  W  N  S  T  S :   S  T  R  I  F  R  L  V  *  R  M  *  C  G  K  L  K  R  T  C  K  L  G  S  I  T  T  M  N  C  N  C  I  S  F  C  W  S  H  N  L  C  K  K  L  C  N  L  F  L  S  F  P  F  F  C  H  L  V  C  S  L  *  W  D  F  F  L  P  *  A  N  G  Q  L  F  Y  F  I  M  E  *  D  F  C  S  Y  L  I  *  F  A  V  C  I  T  N  I  H  F  *  E  M  Y  T  T  L  Q  P  P  Q  E  K  N  I  I  I   </first_frame>
            <second_frame>  S  P  S  S  L  N  K  *  Q  N  *  I  N  K  L  V  F  F  L  I  H  F  C  Y  P  Y  C  P  F  Q  D  I  P  S  N  F  S  Y  F  K  R  K  *  E  R  S  K  V  L  V  R  D  L  F  C  L  T  F  *  H  F  D  C  C  G  I  L  L  *  *  L  L  L  L  C  I  L  S  *  T  F  C  L  G  F  F  S  L  P  M  F  S  F  F  R  T  A  F  T  *  A  E  G  V  L  E  A  T  S  R  S  P  K  V  G  V  R  S  V  Y  R  L  H  F  P  D  W  A  C  C  W  W  K  K  R  L  *  W  K  L  P  S  G  I  N  P  S  L  V  P  L  S  S  C  K  L  G  F  L  L  M  V  Q  L  V  K  L  C  *  N  I  N  F  I  I  F  C  D  G  S  W  N  S  V  S  A  *  N  K  H  K  D  *  Y  F  M  S  G  T  Q  M  S  Y  G  C  F  N  H  C  A  V  K  G  S  L  R  R  I  T  P  A  F  F  K  G  L  C  K  Y  L  S  Y  E  S  G  K  N  Q  A  Q  S  W  *  I  *  N  G  K  D  N  W  *  G  N  I  C  *  S  *  V  C  E  E  F  G  D  R  R  S  C  S  D  Q  D  S  *  *  G  *  G  P  *  A  Q  N  G  *  A   : D  K  A  G  D  S  Y  N  E  V  N  *  T  S  T  C  R  S  V  I  R   : G  V  G  *  Q  D  K  D  I  H  C  S  G  V  R  Y  R  R  R  A  L  *  Q  N   : C  K  S  W  T  D  A  *  K  R  S  K  E  I  L  S  A  A  Y  *  C  C  *  L  L  S  *  Q  G  S  L  P  *  R  F  K   : A  *  E  F  T  L  G  C  Q  W  K  P  Q  G  F  *  F  W  I  E  C  S  V  P  A  S  Q   : G  *  W  L  T  P  H  H  M  W  N  S  Q  L  C  C  S  *   : G  T  Q  R  S  W  I  *  W  Y  N  R  G  S  V  V  V  R  S  H  T  L  C  I  A  C  R  L  L  A  F  *  *  L  Q  S  Y  *  P  V  *  K   : N  L  C  C  *  I  Y  M  S  S  L  D  V  F  W  C  Y  E  V  N  Y  S  H  L  G  S  E  P  Y  D   : T  Y  H  H  L  R  N  S  G  G  *  V  V  Q  E  R  L  *  I  S  H  F  *  *  E  R  R  C  Q  P  G  *  C  *  S  C  L  Q  G  F  *   : R  T  S  C  N  R  E  K  G  R  A  A  N  S  H  E  C  I  R  V  D  F  N  V  K  R  T  Q  P  W  E  S  L  R  *  T   : G  I  *  E  R  N  K  V  H  I  *  M  L  G  Q  *  N  Y  Q  *  D  *  R  S  C  K  A  P  R  F  *  C  S  Q  K  E  L  Q   : D  E  T  *  K  C  Q  S  W  K  K  R  E  P  *  C  C  H  *   : G  I  S  S  C  P  F  S  S  Y  G  *  S  P  K  G  K  R  R  Y  F  G  I  P  Q   : V  L  Q  E  S  F  D  *  S  R  G  C  S  V  E  N  *  R  G  H  A  S  *  V  V  L  L  P  *  T  A  I  A  *  A  F  A  G  P  T  I  C  V  K  N  F  A  T  C  F  F  L  S  L  F  F  V  I  W  S  V  L  C  S  G  T  F  F  S  H  E  L  M  A  N  C  S  I  S  S  W  S  R  T  F  V  P  I  *  F  D  L  Q  F  V  *  Q  I  Y  T  F  E  K  C  I  Q  L  F  S  P  L  K  K  K  I  S  *  S  </second_frame>
            <third_frame>   P  P  P  P  *  T  N  S  R  T  E  *  T  N  L  C  F  F  L  F  I  S  V  I  L  I  V  P  S  K  I  Y  L  L  T  F  P  I  S  K  G  S  K  K  G  R  K  F  L  L  G  T  S  F  V  *  L  S  S  T  L  I  V  V  V  F  C  C  S  D  Y  S  F  Y  V  F  F  L  E  H  F  V  L  A  S  S  L  S  L  C  F  L  F  F  E  L  L  L  L  E  P  R  V  Y  W  K  Q  P  L  D  L  L  R  *  G  *  G  L  S  T  D  S  T  S  Q  T  G  H  V  V  G  G  R  S  D  Y  D  G  N  F  L  Q  E  *  I  H  H  S  F  H  C  Q  A  A  S  W  G  F  F  *  W  C  S  *  S  S  C  V  E  I  S  I  L  *  F  F  V  M  G  L  G  I  L  *  V  H  E  I  N  I  K  I  S  I  L  C  Q  E  L  R  C  L  M  D  V  L  I  I  V  Q  *  K  V  L  *  E  G  L  R  L  H  S  L  K  D  C  A  S  I  S  V  M  N  Q  A  K  I  K  R  R  V  G  K  Y  E  M  G  R  T  I  G  E  G  T  F  A  K  V  K  F  A  R  N  S  E  T  G  E  A  V  A  I  K  I  L  D  K  D  K  V  L  K  H  K  M  A  E  Q  :  I  K  R  E  I  A  T  M  K  L  I  R  H  P  H  V  V  Q  L  Y  E  :  V  L  A  S  K  T  K  I  F  I  V  L  E  F  V  T  G  G  E  L  F  D  K  I  :  V  N  H  G  R  M  H  E  K  E  A  R  K  Y  F  Q  Q  L  I  N  A  V  D  Y  C  H  S  R  G  V  Y  H  R  D  L  K  :  P  E  N  L  L  L  D  V  N  G  N  L  K  V  S  D  F  G  L  S  A  L  S  Q  Q  V  R  :  D  D  G  L  L  H  T  T  C  G  T  P  N  Y  V  A  P  E  :  V  L  N  D  H  G  Y  D  G  T  T  A  D  L  W  S  C  G  V  I  L  F  V  L  L  A  G  Y  L  P  F  D  D  S  N  L  I  N  L  Y  K  K  :  I  S  A  A  E  F  T  C  P  P  W  M  S  F  G  A  M  K  L  I  T  R  I  L  D  P  N  P  M  T  :  R  I  T  I  S  E  I  L  E  D  E  W  F  K  K  D  Y  K  S  P  I  F  N  E  K  G  D  A  N  L  D  D  V  E  A  V  F  K  D  S  E  :  E  H  H  V  T  E  K  K  E  E  Q  P  T  P  M  N  A  F  E  L  I  S  M  S  K  G  L  N  L  G  N  L  F  D  E  Q  :  E  F  K  R  E  T  R  F  T  S  K  C  S  A  N  E  I  I  S  K  I  E  E  A  A  K  P  L  G  F  D  V  H  K  K  N  Y  K  :  M  R  L  E  N  V  K  A  G  R  K  G  N  L  N  V  A  T  E  :  V  F  Q  V  A  P  S  L  H  M  V  E  V  R  K  A  K  G  D  T  L  E  F  H  K  :  F  Y  K  N  L  S  T  S  L  E  D  V  V  W  K  T  E  E  D  M  Q  A  R  *  Y  Y  Y  H  E  L  Q  L  H  K  L  L  L  V  P  Q  S  V  *  K  T  L  Q  L  V  S  F  F  P  F  F  L  S  F  G  L  F  F  V  V  G  L  F  S  P  M  S  *  W  P  T  V  L  F  H  H  G  V  G  L  L  F  L  F  D  L  I  C  S  L  Y  N  K  Y  T  L  L  R  N  V  Y  N  S  S  A  P  S  R  K  K  Y  H  N  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72068" stop="71850"/>
                    <exon start="71597" stop="71535"/>
                    <exon start="70304" stop="70233"/>
                    <exon start="70021" stop="69914"/>
                    <exon start="69804" stop="69724"/>
                    <exon start="69014" stop="68961"/>
                    <exon start="68825" stop="68700"/>
                    <exon start="68615" stop="68526"/>
                    <exon start="68425" stop="68303"/>
                    <exon start="68195" stop="68088"/>
                    <exon start="67272" stop="67159"/>
                    <exon start="67070" stop="67014"/>
                    <exon start="66868" stop="66794"/>
                    <exon start="66095" stop="66024"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1359</number_coding_nucleotides>
                  <number_encoded_amino_acids>453</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGLRLHSLKDCASISVMNQAKIKRRVGKYEMGRTIGEGTFAKVKFARNSETGEAVAIKILDKDKVLKHKMAEQIKREIATMKLIRHPHVVQLYEVLASKTKIFIVLEFVTGGELFDKIVNHGRMHEKEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDVNGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDHGYDGTTADLWSCGVILFVLLAGYLPFDDSNLINLYKKISAAEFTCPPWMSFGAMKLITRILDPNPMTRITISEILEDEWFKKDYKSPIFNEKGDANLDDVEAVFKDSEEHHVTEKKEEQPTPMNAFELISMSKGLNLGNLFDEQEFKRETRFTSKCSANEIISKIEEAAKPLGFDVHKKNYKMRLENVKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72376" stop="72182"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRGKVCLQTPLPRLGMLLVEEAIMMETSFRNKSITRSTVKLQVGVSFDGAVSQVVLKYQFYNFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73702" e_stop="73624"/>
            <exon e_start="72083" e_stop="71850"/>
            <exon e_start="71597" e_stop="71535"/>
            <exon e_start="70304" e_stop="70233"/>
            <exon e_start="70021" e_stop="69914"/>
            <exon e_start="69804" e_stop="69724"/>
            <exon e_start="69014" e_stop="68961"/>
            <exon e_start="68825" e_stop="68700"/>
            <exon e_start="68615" e_stop="68526"/>
            <exon e_start="68425" e_stop="68303"/>
            <exon e_start="68195" e_stop="68088"/>
            <exon e_start="67272" e_stop="67159"/>
            <exon e_start="67070" e_stop="67014"/>
            <exon e_start="66868" e_stop="66794"/>
            <exon e_start="66095" e_stop="65742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.957" e_score="0.962"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.966"/>
          <exon-intron don_prob="0.952" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.981" e_score="0.991"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="73702" e_stop="73624" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.957">
            <gDNA_intron_boundary i_start="73623" i_stop="72084" i_length="1540"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="72083" e_stop="71850" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71849" i_stop="71598" i_length="252"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71597" e_stop="71535" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.892">
            <gDNA_intron_boundary i_start="71534" i_stop="70305" i_length="1230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70304" e_stop="70233" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.955" acc_prob="0.990">
            <gDNA_intron_boundary i_start="70232" i_stop="70022" i_length="211"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70021" e_stop="69914" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="69913" i_stop="69805" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69804" e_stop="69724" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="0.964">
            <gDNA_intron_boundary i_start="69723" i_stop="69015" i_length="709"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69014" e_stop="68961" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68960" i_stop="68826" i_length="135"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68825" e_stop="68700" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.859" acc_prob="0.882">
            <gDNA_intron_boundary i_start="68699" i_stop="68616" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="68615" e_stop="68526" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.802" acc_prob="0.974">
            <gDNA_intron_boundary i_start="68525" i_stop="68426" i_length="100"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68425" e_stop="68303" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.944" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68302" i_stop="68196" i_length="107"/>
          </intron>
          <exon e_serial="11" e_score="0.991">
            <gDNA_exon_boundary e_start="68195" e_stop="68088" e_length="108"/>
          </exon>
          <intron i_serial="11" don_prob="0.990" acc_prob="0.981">
            <gDNA_intron_boundary i_start="68087" i_stop="67273" i_length="815"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="67272" e_stop="67159" e_length="114"/>
          </exon>
          <intron i_serial="12" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="67070" e_stop="67014" e_length="57"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="66868" e_stop="66794" e_length="75"/>
          </exon>
          <intron i_serial="14" don_prob="0.934" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="66095" e_stop="65742" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73702" stop="73624"/>
              <exon start="72083" stop="71850"/>
              <exon start="71597" stop="71564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72050" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72048" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71948" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71948" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71919" stop="71850"/>
              <exon start="71597" stop="71535"/>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70304" stop="70233"/>
              <exon start="70021" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69931" stop="69914"/>
              <exon start="69804" stop="69724"/>
              <exon start="69014" stop="68961"/>
              <exon start="68825" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68303"/>
              <exon start="68195" stop="68125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68791" stop="68700"/>
              <exon start="68615" stop="68526"/>
              <exon start="68425" stop="68303"/>
              <exon start="68195" stop="68088"/>
              <exon start="67272" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68337" stop="68303"/>
              <exon start="68195" stop="68088"/>
              <exon start="67272" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578425" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67268" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67189" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67189" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67165" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67165" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67165" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67041" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294719" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67041" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66867" stop="66794"/>
              <exon start="66095" stop="65755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCAATTACTACAAAACAATCTTTGTATAGTTGTGTGGCTGTGGTACAAATAAACCATCTTGAGATTCCATTGGAAGAG : TAAAAGGTTCTTTAAGAAGGATTACGCCTGCATTCTTTAAAGGACTGTGCAAGTATCTCAGTTATGAATCAGGCAAAAATCAAGCGCAGAGTTGGTAAATATGAAATGGGAAGGACAATTGGTGAGGGAACATTTGCTAAAGTTAAGTTTGCGAGGAATTCGGAGACAGGAGAAGCTGTAGCGATCAAGATTCTTGATAAGGATAAGGTCCTTAAGCACAAAATGGCTGAGCAG : ATAAAGCGGGAGATAGCTACAATGAAGTTAATTAGACATCCACATGTCGTTCAGTTATACGAG : GTGTTGGCTAGCAAGACAAAGATATTCATTGTTCTGGAGTTCGTTACAGGCGGAGAGCTCTTTGACAAAATT : GTAAATCATGGACGGATGCATGAAAAAGAAGCAAGGAAATACTTTCAGCAGCTTATTAATGCTGTTGATTATTGTCATAGCAGGGGAGTCTACCATAGAGATTTAAAG : CCTGAGAATTTACTCTTGGATGTCAATGGAAACCTCAAGGTTTCTGATTTTGGATTGAGTGCTCTGTCCCAGCAAGTCAGG : GATGATGGCTTACTCCACACCACATGTGGAACTCCCAACTATGTTGCTCCTGAG : GTACTCAACGATCATGGATATGATGGTACAACCGCGGATCTGTGGTCGTGCGGAGTCATACTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACTCCAATCTTATTAACCTGTATAAAAAA : ATCTCTGCTGCTGAATTTACATGTCCTCCTTGGATGTCTTTTGGTGCTATGAAGTTAATTACTCGCATCTTGGATCCGAACCCTATGACA : CGTATCACCATCTCAGAAATTCTGGAGGATGAGTGGTTCAAGAAAGATTATAAATCTCCCATTTTTAATGAGAAAGGAGATGCCAACCTGGATGATGTTGAAGCTGTCTTCAAGGATTCTGAA : GAACATCATGTAACAGAGAAAAAGGAAGAGCAGCCAACTCCCATGAATGCATTCGAGTTGATTTCAATGTCAAAAGGACTCAACCTTGGGAATCTCTTCGATGAACAG : GAATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAG : ATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG : GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG : TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAATATCATAATCCT</gDNA_template>
            <first_frame> V  N  Y  Y  K  T  I  F  V  *  L  C  G  C  G  T  N  K  P  S  *  D  S  I  G  R   : V  K  G  S  L  R  R  I  T  P  A  F  F  K  G  L  C  K  Y  L  S  Y  E  S  G  K  N  Q  A  Q  S  W  *  I  *  N  G  K  D  N  W  *  G  N  I  C  *  S  *  V  C  E  E  F  G  D  R  R  S  C  S  D  Q  D  S  *  *  G  *  G  P  *  A  Q  N  G  *  A   : D  K  A  G  D  S  Y  N  E  V  N  *  T  S  T  C  R  S  V  I  R   : G  V  G  *  Q  D  K  D  I  H  C  S  G  V  R  Y  R  R  R  A  L  *  Q  N   : C  K  S  W  T  D  A  *  K  R  S  K  E  I  L  S  A  A  Y  *  C  C  *  L  L  S  *  Q  G  S  L  P  *  R  F  K   : A  *  E  F  T  L  G  C  Q  W  K  P  Q  G  F  *  F  W  I  E  C  S  V  P  A  S  Q   : G  *  W  L  T  P  H  H  M  W  N  S  Q  L  C  C  S  *   : G  T  Q  R  S  W  I  *  W  Y  N  R  G  S  V  V  V  R  S  H  T  L  C  I  A  C  R  L  L  A  F  *  *  L  Q  S  Y  *  P  V  *  K   : N  L  C  C  *  I  Y  M  S  S  L  D  V  F  W  C  Y  E  V  N  Y  S  H  L  G  S  E  P  Y  D   : T  Y  H  H  L  R  N  S  G  G  *  V  V  Q  E  R  L  *  I  S  H  F  *  *  E  R  R  C  Q  P  G  *  C  *  S  C  L  Q  G  F  *   : R  T  S  C  N  R  E  K  G  R  A  A  N  S  H  E  C  I  R  V  D  F  N  V  K  R  T  Q  P  W  E  S  L  R  *  T   : G  I  *  E  R  N  K  V  H  I  *  M  L  G  Q  *  N  Y  Q  *  D  *  R  S  C  K  A  P  R  F  *  C  S  Q  K  E  L  Q   : D  E  T  *  K  C  Q  S  W  K  K  R  E  P  *  C  C  H  *   : G  I  S  S  C  P  F  S  S  Y  G  *  S  P  K  G  K  R  R  Y  F  G  I  P  Q   : V  L  Q  E  S  F  D  *  S  R  G  C  S  V  E  N  *  R  G  H  A  S  *  V  V  L  L  P  *  T  A  I  A  *  A  F  A  G  P  T  I  C  V  K  N  F  A  T  C  F  F  L  S  L  F  F  V  I  W  S  V  L  C  S  G  T  F  F  S  H  E  L  M  A  N  C  S  I  S  S  W  S  R  T  F  V  P  I  *  F  D  L  Q  F  V  *  Q  I  Y  T  F  E  K  C  I  Q  L  F  S  P  L  K  K  K  I  S  *  S  </first_frame>
            <second_frame>  S  I  T  T  K  Q  S  L  Y  S  C  V  A  V  V  Q  I  N  H  L  E  I  P  L  E  E  :  *  K  V  L  *  E  G  L  R  L  H  S  L  K  D  C  A  S  I  S  V  M  N  Q  A  K  I  K  R  R  V  G  K  Y  E  M  G  R  T  I  G  E  G  T  F  A  K  V  K  F  A  R  N  S  E  T  G  E  A  V  A  I  K  I  L  D  K  D  K  V  L  K  H  K  M  A  E  Q  :  I  K  R  E  I  A  T  M  K  L  I  R  H  P  H  V  V  Q  L  Y  E  :  V  L  A  S  K  T  K  I  F  I  V  L  E  F  V  T  G  G  E  L  F  D  K  I  :  V  N  H  G  R  M  H  E  K  E  A  R  K  Y  F  Q  Q  L  I  N  A  V  D  Y  C  H  S  R  G  V  Y  H  R  D  L  K  :  P  E  N  L  L  L  D  V  N  G  N  L  K  V  S  D  F  G  L  S  A  L  S  Q  Q  V  R  :  D  D  G  L  L  H  T  T  C  G  T  P  N  Y  V  A  P  E  :  V  L  N  D  H  G  Y  D  G  T  T  A  D  L  W  S  C  G  V  I  L  F  V  L  L  A  G  Y  L  P  F  D  D  S  N  L  I  N  L  Y  K  K  :  I  S  A  A  E  F  T  C  P  P  W  M  S  F  G  A  M  K  L  I  T  R  I  L  D  P  N  P  M  T  :  R  I  T  I  S  E  I  L  E  D  E  W  F  K  K  D  Y  K  S  P  I  F  N  E  K  G  D  A  N  L  D  D  V  E  A  V  F  K  D  S  E  :  E  H  H  V  T  E  K  K  E  E  Q  P  T  P  M  N  A  F  E  L  I  S  M  S  K  G  L  N  L  G  N  L  F  D  E  Q  :  E  F  K  R  E  T  R  F  T  S  K  C  S  A  N  E  I  I  S  K  I  E  E  A  A  K  P  L  G  F  D  V  H  K  K  N  Y  K  :  M  R  L  E  N  V  K  A  G  R  K  G  N  L  N  V  A  T  E  :  V  F  Q  V  A  P  S  L  H  M  V  E  V  R  K  A  K  G  D  T  L  E  F  H  K  :  F  Y  K  N  L  S  T  S  L  E  D  V  V  W  K  T  E  E  D  M  Q  A  R  *  Y  Y  Y  H  E  L  Q  L  H  K  L  L  L  V  P  Q  S  V  *  K  T  L  Q  L  V  S  F  F  P  F  F  L  S  F  G  L  F  F  V  V  G  L  F  S  P  M  S  *  W  P  T  V  L  F  H  H  G  V  G  L  L  F  L  F  D  L  I  C  S  L  Y  N  K  Y  T  L  L  R  N  V  Y  N  S  S  A  P  S  R  K  K  Y  H  N  P </second_frame>
            <third_frame>   Q  L  L  Q  N  N  L  C  I  V  V  W  L  W  Y  K  *  T  I  L  R  F  H  W  K  S :   K  R  F  F  K  K  D  Y  A  C  I  L  *  R  T  V  Q  V  S  Q  L  *  I  R  Q  K  S  S  A  E  L  V  N  M  K  W  E  G  Q  L  V  R  E  H  L  L  K  L  S  L  R  G  I  R  R  Q  E  K  L  *  R  S  R  F  L  I  R  I  R  S  L  S  T  K  W  L  S  R :   *  S  G  R  *  L  Q  *  S  *  L  D  I  H  M  S  F  S  Y  T  R :   C  W  L  A  R  Q  R  Y  S  L  F  W  S  S  L  Q  A  E  S  S  L  T  K  L :   *  I  M  D  G  C  M  K  K  K  Q  G  N  T  F  S  S  L  L  M  L  L  I  I  V  I  A  G  E  S  T  I  E  I  *  S :   L  R  I  Y  S  W  M  S  M  E  T  S  R  F  L  I  L  D  *  V  L  C  P  S  K  S  G :   M  M  A  Y  S  T  P  H  V  E  L  P  T  M  L  L  L  R :   Y  S  T  I  M  D  M  M  V  Q  P  R  I  C  G  R  A  E  S  Y  S  L  Y  C  L  Q  V  T  C  L  L  M  T  P  I  L  L  T  C  I  K  K :   S  L  L  L  N  L  H  V  L  L  G  C  L  L  V  L  *  S  *  L  L  A  S  W  I  R  T  L  *  H :   V  S  P  S  Q  K  F  W  R  M  S  G  S  R  K  I  I  N  L  P  F  L  M  R  K  E  M  P  T  W  M  M  L  K  L  S  S  R  I  L  K :   N  I  M  *  Q  R  K  R  K  S  S  Q  L  P  *  M  H  S  S  *  F  Q  C  Q  K  D  S  T  L  G  I  S  S  M  N  R :   N  L  R  E  K  Q  G  S  H  L  N  A  R  P  M  K  L  S  V  R  L  K  K  L  Q  S  P  S  V  L  M  F  T  K  R  T  T  R :   *  D  L  K  M  S  K  L  E  E  K  G  T  L  M  L  P  L  R :   Y  F  K  L  P  L  L  F  I  W  L  K  S  E  R  Q  K  E  I  L  W  N  S  T  S :   S  T  R  I  F  R  L  V  *  R  M  *  C  G  K  L  K  R  T  C  K  L  G  S  I  T  T  M  N  C  N  C  I  S  F  C  W  S  H  N  L  C  K  K  L  C  N  L  F  L  S  F  P  F  F  C  H  L  V  C  S  L  *  W  D  F  F  L  P  *  A  N  G  Q  L  F  Y  F  I  M  E  *  D  F  C  S  Y  L  I  *  F  A  V  C  I  T  N  I  H  F  *  E  M  Y  T  T  L  Q  P  P  Q  E  K  N  I  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72068" stop="71850"/>
                    <exon start="71597" stop="71535"/>
                    <exon start="70304" stop="70233"/>
                    <exon start="70021" stop="69914"/>
                    <exon start="69804" stop="69724"/>
                    <exon start="69014" stop="68961"/>
                    <exon start="68825" stop="68700"/>
                    <exon start="68615" stop="68526"/>
                    <exon start="68425" stop="68303"/>
                    <exon start="68195" stop="68088"/>
                    <exon start="67272" stop="67159"/>
                    <exon start="67070" stop="67014"/>
                    <exon start="66868" stop="66794"/>
                    <exon start="66095" stop="66024"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1359</number_coding_nucleotides>
                  <number_encoded_amino_acids>453</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGLRLHSLKDCASISVMNQAKIKRRVGKYEMGRTIGEGTFAKVKFARNSETGEAVAIKILDKDKVLKHKMAEQIKREIATMKLIRHPHVVQLYEVLASKTKIFIVLEFVTGGELFDKIVNHGRMHEKEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDVNGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDHGYDGTTADLWSCGVILFVLLAGYLPFDDSNLINLYKKISAAEFTCPPWMSFGAMKLITRILDPNPMTRITISEILEDEWFKKDYKSPIFNEKGDANLDDVEAVFKDSEEHHVTEKKEEQPTPMNAFELISMSKGLNLGNLFDEQEFKRETRFTSKCSANEIISKIEEAAKPLGFDVHKKNYKMRLENVKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="67429" e_stop="67159"/>
            <exon e_start="67070" e_stop="67014"/>
            <exon e_start="66868" e_stop="66794"/>
            <exon e_start="66095" e_stop="65742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="0.985"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="67429" e_stop="67159" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="67158" i_stop="67071" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67070" e_stop="67014" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66868" e_stop="66794" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.934" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66095" e_stop="65742" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67429" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67268" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67189" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67189" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67165" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67165" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67165" stop="67159"/>
              <exon start="67070" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67041" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294719" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67041" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66867" stop="66794"/>
              <exon start="66095" stop="65755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCAAAAAACTTGGTCTCTTTTCCCGAATGGCCATTTTTCCCACCAACAATTCAAATCAATATAAATTGGTATTCCACCTTGTCGGAGAAATTGATGATTTGTGTATTGCTATAATATTACTTCATTCACAGATGTTTTGATTCCGACATTCACAGGAATTTAAGAGAGAAACAAGGTTCACATCTAAATGCTCGGCCAATGAAATTATCAGTAAGATTGAAGAAGCTGCAAAGCCCCTCGGTTTTGATGTTCACAAAAAGAACTACAAG : ATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG : GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG : TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAATATCATAATCCT</gDNA_template>
            <first_frame> T  Q  K  T  W  S  L  F  P  N  G  H  F  S  H  Q  Q  F  K  S  I  *  I  G  I  P  P  C  R  R  N  *  *  F  V  Y  C  Y  N  I  T  S  F  T  D  V  L  I  P  T  F  T  G  I  *  E  R  N  K  V  H  I  *  M  L  G  Q  *  N  Y  Q  *  D  *  R  S  C  K  A  P  R  F  *  C  S  Q  K  E  L  Q   : D  E  T  *  K  C  Q  S  W  K  K  R  E  P  *  C  C  H  *   : G  I  S  S  C  P  F  S  S  Y  G  *  S  P  K  G  K  R  R  Y  F  G  I  P  Q   : V  L  Q  E  S  F  D  *  S  R  G  C  S  V  E  N  *  R  G  H  A  S  *  V  V  L  L  P  *  T  A  I  A  *  A  F  A  G  P  T  I  C  V  K  N  F  A  T  C  F  F  L  S  L  F  F  V  I  W  S  V  L  C  S  G  T  F  F  S  H  E  L  M  A  N  C  S  I  S  S  W  S  R  T  F  V  P  I  *  F  D  L  Q  F  V  *  Q  I  Y  T  F  E  K  C  I  Q  L  F  S  P  L  K  K  K  I  S  *  S  </first_frame>
            <second_frame>  L  K  K  L  G  L  F  S  R  M  A  I  F  P  T  N  N  S  N  Q  Y  K  L  V  F  H  L  V  G  E  I  D  D  L  C  I  A  I  I  L  L  H  S  Q  M  F  *  F  R  H  S  Q  E  F  K  R  E  T  R  F  T  S  K  C  S  A  N  E  I  I  S  K  I  E  E  A  A  K  P  L  G  F  D  V  H  K  K  N  Y  K  :  M  R  L  E  N  V  K  A  G  R  K  G  N  L  N  V  A  T  E  :  V  F  Q  V  A  P  S  L  H  M  V  E  V  R  K  A  K  G  D  T  L  E  F  H  K  :  F  Y  K  N  L  S  T  S  L  E  D  V  V  W  K  T  E  E  D  M  Q  A  R  *  Y  Y  Y  H  E  L  Q  L  H  K  L  L  L  V  P  Q  S  V  *  K  T  L  Q  L  V  S  F  F  P  F  F  L  S  F  G  L  F  F  V  V  G  L  F  S  P  M  S  *  W  P  T  V  L  F  H  H  G  V  G  L  L  F  L  F  D  L  I  C  S  L  Y  N  K  Y  T  L  L  R  N  V  Y  N  S  S  A  P  S  R  K  K  Y  H  N  P </second_frame>
            <third_frame>   S  K  N  L  V  S  F  P  E  W  P  F  F  P  P  T  I  Q  I  N  I  N  W  Y  S  T  L  S  E  K  L  M  I  C  V  L  L  *  Y  Y  F  I  H  R  C  F  D  S  D  I  H  R  N  L  R  E  K  Q  G  S  H  L  N  A  R  P  M  K  L  S  V  R  L  K  K  L  Q  S  P  S  V  L  M  F  T  K  R  T  T  R :   *  D  L  K  M  S  K  L  E  E  K  G  T  L  M  L  P  L  R :   Y  F  K  L  P  L  L  F  I  W  L  K  S  E  R  Q  K  E  I  L  W  N  S  T  S :   S  T  R  I  F  R  L  V  *  R  M  *  C  G  K  L  K  R  T  C  K  L  G  S  I  T  T  M  N  C  N  C  I  S  F  C  W  S  H  N  L  C  K  K  L  C  N  L  F  L  S  F  P  F  F  C  H  L  V  C  S  L  *  W  D  F  F  L  P  *  A  N  G  Q  L  F  Y  F  I  M  E  *  D  F  C  S  Y  L  I  *  F  A  V  C  I  T  N  I  H  F  *  E  M  Y  T  T  L  Q  P  P  Q  E  K  N  I  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67287" stop="67159"/>
                    <exon start="67070" stop="67014"/>
                    <exon start="66868" stop="66794"/>
                    <exon start="66095" stop="66024"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRHSQEFKRETRFTSKCSANEIISKIEEAAKPLGFDVHKKNYKMRLENVKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="67181" e_stop="67014"/>
            <exon e_start="66868" e_stop="66794"/>
            <exon e_start="66095" e_stop="65742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.976"/>
          <exon-intron don_prob="0.934" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="67181" e_stop="67014" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67013" i_stop="66869" i_length="145"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66868" e_stop="66794" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66793" i_stop="66096" i_length="698"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66095" e_stop="65742" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67181" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615234" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67041" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294719" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67041" stop="67014"/>
              <exon start="66868" stop="66794"/>
              <exon start="66095" stop="65766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66867" stop="66794"/>
              <exon start="66095" stop="65755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTTCACAAAAAGAACTACAAGGTGGTGATGTATTTCAAGTATGCATTTCAATTGGCATGTAGATTCCTAATAAAGTTAAATTAATTCGCATTCTACTCTTTTACTTCAGATGAGACTTGAAAATGTCAAAGCTGGAAGAAAAGGGAACCTTAATGTTGCCACTGAG : GTATTTCAAGTTGCCCCTTCTCTTCATATGGTTGAAGTCCGAAAGGCAAAAGGAGATACTTTGGAATTCCACAAG : TTCTACAAGAATCTTTCGACTAGTCTAGAGGATGTAGTGTGGAAAACTGAAGAGGACATGCAAGCTAGGTAGTATTACTACCATGAACTGCAATTGCATAAGCTTTTGCTGGTCCCACAATCTGTGTAAAAAACTTTGCAACTTGTTTCTTTCTTTCCCTTTTTTTTGTCATTTGGTCTGTTCTTTGTAGTGGGACTTTTTTCTCCCATGAGCTAATGGCCAACTGTTCTATTTCATCATGGAGTAGGACTTTTGTTCCTATTTGATTTGATTTGCAGTTTGTATAACAAATATACACTTTTGAGAAATGTATACAACTCTTCAGCCCCCTCAAGAAAAAAATATCATAATCCT</gDNA_template>
            <first_frame> M  F  T  K  R  T  T  R  W  *  C  I  S  S  M  H  F  N  W  H  V  D  S  *  *  S  *  I  N  S  H  S  T  L  L  L  Q  M  R  L  E  N  V  K  A  G  R  K  G  N  L  N  V  A  T  E  :  V  F  Q  V  A  P  S  L  H  M  V  E  V  R  K  A  K  G  D  T  L  E  F  H  K  :  F  Y  K  N  L  S  T  S  L  E  D  V  V  W  K  T  E  E  D  M  Q  A  R  *  Y  Y  Y  H  E  L  Q  L  H  K  L  L  L  V  P  Q  S  V  *  K  T  L  Q  L  V  S  F  F  P  F  F  L  S  F  G  L  F  F  V  V  G  L  F  S  P  M  S  *  W  P  T  V  L  F  H  H  G  V  G  L  L  F  L  F  D  L  I  C  S  L  Y  N  K  Y  T  L  L  R  N  V  Y  N  S  S  A  P  S  R  K  K  Y  H  N  P </first_frame>
            <second_frame>  C  S  Q  K  E  L  Q  G  G  D  V  F  Q  V  C  I  S  I  G  M  *  I  P  N  K  V  K  L  I  R  I  L  L  F  Y  F  R  *  D  L  K  M  S  K  L  E  E  K  G  T  L  M  L  P  L  R :   Y  F  K  L  P  L  L  F  I  W  L  K  S  E  R  Q  K  E  I  L  W  N  S  T  S :   S  T  R  I  F  R  L  V  *  R  M  *  C  G  K  L  K  R  T  C  K  L  G  S  I  T  T  M  N  C  N  C  I  S  F  C  W  S  H  N  L  C  K  K  L  C  N  L  F  L  S  F  P  F  F  C  H  L  V  C  S  L  *  W  D  F  F  L  P  *  A  N  G  Q  L  F  Y  F  I  M  E  *  D  F  C  S  Y  L  I  *  F  A  V  C  I  T  N  I  H  F  *  E  M  Y  T  T  L  Q  P  P  Q  E  K  N  I  I  I   </second_frame>
            <third_frame>   V  H  K  K  N  Y  K  V  V  M  Y  F  K  Y  A  F  Q  L  A  C  R  F  L  I  K  L  N  *  F  A  F  Y  S  F  T  S  D  E  T  *  K  C  Q  S  W  K  K  R  E  P  *  C  C  H  *   : G  I  S  S  C  P  F  S  S  Y  G  *  S  P  K  G  K  R  R  Y  F  G  I  P  Q   : V  L  Q  E  S  F  D  *  S  R  G  C  S  V  E  N  *  R  G  H  A  S  *  V  V  L  L  P  *  T  A  I  A  *  A  F  A  G  P  T  I  C  V  K  N  F  A  T  C  F  F  L  S  L  F  F  V  I  W  S  V  L  C  S  G  T  F  F  S  H  E  L  M  A  N  C  S  I  S  S  W  S  R  T  F  V  P  I  *  F  D  L  Q  F  V  *  Q  I  Y  T  F  E  K  C  I  Q  L  F  S  P  L  K  K  K  I  S  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67100" stop="67014"/>
                    <exon start="66868" stop="66794"/>
                    <exon start="66095" stop="66024"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INSHSTLLLQMRLENVKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="91890" PGL_stop="92412"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91890" e_stop="91976"/>
            <exon e_start="92099" e_stop="92412"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91890" e_stop="91976" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91977" i_stop="92098" i_length="122"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="92099" e_stop="92412" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91890" stop="91976"/>
              <exon start="92099" stop="92412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244185" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATACGGAAGAAAACATGAAGAGTTTCATCATGCTTTTTCTTTTTGCTGTGACAATTTTTTTCACTTTGTTTGACCATTCACTAG : GTGATGATCCTAAATTTTGTCCAGGAACTTTCACAGTTAATGACGTATGTGCTAATATTAGTTGTGGATATCAAGCTGTATTTCATTGGCCAGCAAGTAAAATGCCTCATAGTTGTGTTTGTACTGCTTCGGGAAGCAATCAAAGTCTTTGTACTTGTCAAATTGTTTGTGATGCAAAATAATGTAATAAAAGTGCTTATTATTGATGTTGATTCAGTAATTGTATGTATCGATTGAATGATTGAGAATAAATAATAACGTATAATATGAAAAACGTTAAAAATTGAGAAACCAAAATAGCATCTAAAAGCTAC</gDNA_template>
            <first_frame> S  I  R  K  K  T  *  R  V  S  S  C  F  F  F  L  L  *  Q  F  F  S  L  C  L  T  I  H  *  :  V  M  I  L  N  F  V  Q  E  L  S  Q  L  M  T  Y  V  L  I  L  V  V  D  I  K  L  Y  F  I  G  Q  Q  V  K  C  L  I  V  V  F  V  L  L  R  E  A  I  K  V  F  V  L  V  K  L  F  V  M  Q  N  N  V  I  K  V  L  I  I  D  V  D  S  V  I  V  C  I  D  *  M  I  E  N  K  *  *  R  I  I  *  K  T  L  K  I  E  K  P  K  *  H  L  K  A   </first_frame>
            <second_frame>  Q  Y  G  R  K  H  E  E  F  H  H  A  F  S  F  C  C  D  N  F  F  H  F  V  *  P  F  T  R :   *  *  S  *  I  L  S  R  N  F  H  S  *  *  R  M  C  *  Y  *  L  W  I  S  S  C  I  S  L  A  S  K  *  N  A  S  *  L  C  L  Y  C  F  G  K  Q  S  K  S  L  Y  L  S  N  C  L  *  C  K  I  M  *  *  K  C  L  L  L  M  L  I  Q  *  L  Y  V  S  I  E  *  L  R  I  N  N  N  V  *  Y  E  K  R  *  K  L  R  N  Q  N  S  I  *  K  L  </second_frame>
            <third_frame>   N  T  E  E  N  M  K  S  F  I  M  L  F  L  F  A  V  T  I  F  F  T  L  F  D  H  S  L   : G  D  D  P  K  F  C  P  G  T  F  T  V  N  D  V  C  A  N  I  S  C  G  Y  Q  A  V  F  H  W  P  A  S  K  M  P  H  S  C  V  C  T  A  S  G  S  N  Q  S  L  C  T  C  Q  I  V  C  D  A  K  *  C  N  K  S  A  Y  Y  *  C  *  F  S  N  C  M  Y  R  L  N  D  *  E  *  I  I  T  Y  N  M  K  N  V  K  N  *  E  T  K  I  A  S  K  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91892" stop="91976"/>
                    <exon start="92099" stop="92280"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTEENMKSFIMLFLFAVTIFFTLFDHSLGDDPKFCPGTFTVNDVCANISCGYQAVFHWPASKMPHSCVCTASGSNQSLCTCQIVCDAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92099" stop="92335"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMILNFVQELSQLMTYVLILVVDIKLYFIGQQVKCLIVVFVLLREAIKVFVLVKLFVMQNNVIKVLIIDVDSVIVCID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="99316" PGL_stop="98923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99316" e_stop="98923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="99316" e_stop="98923" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99316" stop="98923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99312" stop="98951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCATGAACTTCAACTTATTCTCTATTATTTGATTGCTGAAGATATGATAGTAAATGAAGCTTTTCAAGTGTCTGCAATGATCAAGAAGCTGTCTCCTTCGTGGAACGATTTCAAGAATTATCTAAAGCACAAGCGTAAGGAAATAAAGCTTAAAGATCTTTCGATTCGGCTCAAGATTGAGGAAGATAACAAAAACTCCGAAAAGAAGTCTCGTAAGAGTTCAACAATCATTGGAGTTCATATTGTTGAAGAAGCCCTACCAAAGAAAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTTAGAACAGGCCAAGAAGAAATTCAAAAGCAACTGTTACAATTGTGGTAAGGCTGGCCATAGGTCTTTTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  H  E  L  Q  L  I  L  Y  Y  L  I  A  E  D  M  I  V  N  E  A  F  Q  V  S  A  M  I  K  K  L  S  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  I  K  L  K  D  L  S  I  R  L  K  I  E  E  D  N  K  N  S  E  K  K  S  R  K  S  S  T  I  I  G  V  H  I  V  E  E  A  L  P  K  K  K  R  E  R  S  P  T  G  R  S  *  N  R  P  R  R  N  S  K  A  T  V  T  I  V  V  R  L  A  I  G  L  L  </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  M  N  F  N  L  F  S  I  I  *  L  L  K  I  *  *  *  M  K  L  F  K  C  L  Q  *  S  R  S  C  L  L  R  G  T  I  S  R  I  I  *  S  T  S  V  R  K  *  S  L  K  I  F  R  F  G  S  R  L  R  K  I  T  K  T  P  K  R  S  L  V  R  V  Q  Q  S  L  E  F  I  L  L  K  K  P  Y  Q  R  K  K  E  K  E  V  Q  R  A  E  V  R  T  G  Q  E  E  I  Q  K  Q  L  L  Q  L  W  *  G  W  P  *  V  F  * </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  *  T  S  T  Y  S  L  L  F  D  C  *  R  Y  D  S  K  *  S  F  S  S  V  C  N  D  Q  E  A  V  S  F  V  E  R  F  Q  E  L  S  K  A  Q  A  *  G  N  K  A  *  R  S  F  D  S  A  Q  D  *  G  R  *  Q  K  L  R  K  E  V  S  *  E  F  N  N  H  W  S  S  Y  C  *  R  S  P  T  K  E  K  K  R  K  K  S  N  G  Q  K  L  E  Q  A  K  K  K  F  K  S  N  C  Y  N  C  G  K  A  G  H  R  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99316" stop="98990"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVHELQLILYYLIAEDMIVNEAFQVSAMIKKLSPSWNDFKNYLKHKRKEIKLKDLSIRLKIEEDNKNSEKKSRKSSTIIGVHIVEEALPKKKRERSPTGRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="109165" PGL_stop="102139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109164" e_stop="109084"/>
            <exon e_start="108990" e_stop="108898"/>
            <exon e_start="106761" e_stop="106683"/>
            <exon e_start="105783" e_stop="105543"/>
            <exon e_start="105442" e_stop="105368"/>
            <exon e_start="105284" e_stop="105150"/>
            <exon e_start="104444" e_stop="104257"/>
            <exon e_start="103418" e_stop="103350"/>
            <exon e_start="103203" e_stop="103113"/>
            <exon e_start="103020" e_stop="102886"/>
            <exon e_start="102389" e_stop="102277"/>
            <exon e_start="102188" e_stop="102139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.712" acc_prob="0.000" e_score="0.996"/>
          <exon-intron don_prob="0.987" acc_prob="0.178" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109164" e_stop="109084" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="109083" i_stop="108991" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108990" e_stop="108898" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108897" i_stop="106762" i_length="2136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106761" e_stop="106683" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.895">
            <gDNA_intron_boundary i_start="106682" i_stop="105784" i_length="899"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="105783" e_stop="105543" e_length="241"/>
          </exon>
          <intron i_serial="4" don_prob="0.712" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105542" i_stop="105443" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105442" e_stop="105368" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.178">
            <gDNA_intron_boundary i_start="105367" i_stop="105285" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105284" e_stop="105150" e_length="135"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="105149" i_stop="104445" i_length="705"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104444" e_stop="104257" e_length="188"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104256" i_stop="103419" i_length="838"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="103418" e_stop="103350" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.919" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103349" i_stop="103204" i_length="146"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="103203" e_stop="103113" e_length="91"/>
          </exon>
          <intron i_serial="9" don_prob="0.984" acc_prob="0.987">
            <gDNA_intron_boundary i_start="103112" i_stop="103021" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="103020" e_stop="102886" e_length="135"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="102885" i_stop="102390" i_length="496"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="102389" e_stop="102277" e_length="113"/>
          </exon>
          <intron i_serial="11" don_prob="0.919" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102276" i_stop="102189" i_length="88"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="102188" e_stop="102139" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109164" stop="109084"/>
              <exon start="108990" stop="108898"/>
              <exon start="106761" stop="106683"/>
              <exon start="105783" stop="105563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109160" stop="109084"/>
              <exon start="108990" stop="108898"/>
              <exon start="106761" stop="106683"/>
              <exon start="105783" stop="105680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109158" stop="109084"/>
              <exon start="108990" stop="108898"/>
              <exon start="106761" stop="106683"/>
              <exon start="105783" stop="105564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109156" stop="109084"/>
              <exon start="108990" stop="108898"/>
              <exon start="106761" stop="106683"/>
              <exon start="105783" stop="105543"/>
              <exon start="105442" stop="105374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109144" stop="109084"/>
              <exon start="108990" stop="108898"/>
              <exon start="106761" stop="106683"/>
              <exon start="105783" stop="105543"/>
              <exon start="105442" stop="105386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106739" stop="106683"/>
              <exon start="105783" stop="105543"/>
              <exon start="105442" stop="105368"/>
              <exon start="105284" stop="105272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105763" stop="105543"/>
              <exon start="105442" stop="105368"/>
              <exon start="105284" stop="105150"/>
              <exon start="104444" stop="104286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105626" stop="105543"/>
              <exon start="105442" stop="105368"/>
              <exon start="105284" stop="105150"/>
              <exon start="104444" stop="104424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105432" stop="105368"/>
              <exon start="105284" stop="105150"/>
              <exon start="104444" stop="104257"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104435" stop="104257"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103113"/>
              <exon start="103020" stop="102886"/>
              <exon start="102389" stop="102277"/>
              <exon start="102188" stop="102144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104435" stop="104257"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103113"/>
              <exon start="103020" stop="102886"/>
              <exon start="102389" stop="102300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104429" stop="104257"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103113"/>
              <exon start="103020" stop="102886"/>
              <exon start="102389" stop="102303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104364" stop="104257"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103113"/>
              <exon start="103020" stop="102886"/>
              <exon start="102389" stop="102277"/>
              <exon start="102188" stop="102139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTTCACTTCATCCACAGCTCAAAAATCTCCTCCATTAATCTTCGTTTTCGAGTCTTCTCTAATCAGCCATGGGCTCTG : ATGCAGATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAG : GCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTG : GGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAG : AGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATGAATAAG : ATTTTGAAAGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGACCAGAAGAAAGGTACACAATTGTTGGAGGTATATGCAATAGAGATCCAAATGTACACGGAGACAAAAAATAACAAAAAACTGAAG : GAACTATACACTAAAGCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGGAATAATTCGTGAATGTGGAGGAAAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCTGGGAATCAGAGGCGCATCCAGTGTCTAAA : GTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACC : GTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAG : AGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAG : GAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAACCGGTTGCTAGAATGTGGAGATAG : ATCTAAAGGAATGAAGAAATACGCTGCCATCGACAAATGGAACACACAAC</gDNA_template>
            <first_frame> S  L  H  F  I  H  S  S  K  I  S  S  I  N  L  R  F  R  V  F  S  N  Q  P  W  A  L  :  M  Q  I  W  R  T  M  D  S  S  I  Q  R  R  N  L  K  S  R  M  L  I  L  R  T  N  T  T  T  P  K  :  A  W  L  K  Q  T  Q  R  Q  H  L  R  V  L  L  K  *  F  V  W  N  L  R  R  L  I   : G  D  L  K  P  *  S  K  L  L  S  F  T  I  S  *  G  S  T  R  E  *  W  T  L  T  E  K  C  *  P  T  S  S  Q  L  *  Q  E  I  I  V  K  S  V  *  T  I  S  W  I  S  S  Q  D  Q  L  V  R  T  L  I  S  Y  K  S  S  T  K  Q  H  *  K  P  L  K  R  Q  K  T  R :   G  C  G  S  R  Q  I  *  N  F  A  K  Y  G  L  T  L  G  S  M  D  E  *  I  R :   F  *  K  N  S  T  N  L  V  K  K  K  M  V  L  M  T  R  R  K  V  H  N  C  W  R  Y  M  Q  *  R  S  K  C  T  R  R  Q  K  I  T  K  N  *  R :   N  Y  T  L  K  H  F  Q  S  S  Q  Q  S  L  T  Q  E  *  W  E  *  F  V  N  V  E  E  K  C  I  W  Q  S  G  S  G  Q  R  Q  L  R  T  S  L  K  L  S  R  T  M  M  K  L  G  I  R  G  A  S  S  V  *   : S  T  W  F  W  Q  I  C  *  W  S  L  R  L  T  L  L  M  A  K  K  Q  N   : R  T  K  M  T  L  R  Y  W  Q  *  L  T  L  *  Q  H  I  N  E  M  R  S  *  S  L  R  K  F  L  R :   V  I  E  E  Q  *  W  M  I  P  S  S  E  I  T  L  K  I  F  *  E  M  S  E  P  K  C  C  *  R  S  L  S  L  T  Q  E  S  G  F  P  S  F  P  R :   S  L  M  C  Q  K  K  T  S  G  S  C  W  S  H  S  S  W  T  T  V  S  M  G  T  L  I  K  *  T  G  C  *  N  V  E  I   : D  L  K  E  *  R  N  T  L  P  S  T  N  G  T  H  N </first_frame>
            <second_frame>  L  F  T  S  S  T  A  Q  K  S  P  P  L  I  F  V  F  E  S  S  L  I  S  H  G  L  * :   C  R  Y  G  G  L  W  I  R  V  F  R  G  G  T  *  R  A  G  C  *  Y  *  E  P  I  L  Q  L  Q  R :   L  G  *  N  R  P  R  G  S  T  *  G  F  C  *  S  S  S  Y  G  T  *  E  G  *  L  :  G  I  *  S  L  K  A  N  C  *  A  L  L  *  A  R  E  V  Q  G  N  D  G  R  L  Q  R  N  A  N  L  H  Q  V  S  C  D  K  K  L  *  *  K  V  Y  K  Q  Y  H  G  F  R  L  R  I  S  *  S  E  L  *  S  P  T  R  V  L  P  N  N  I  E  S  P  *  R  G  K  K  R   : E  V  V  V  Q  D  K  S  K  T  L  Q  N  M  V  *  H  W  G  V  W  T  N  E  *   : D  F  E  R  T  P  Q  I  L  S  K  R  R  W  Y  *  *  P  E  E  R  Y  T  I  V  G  G  I  C  N  R  D  P  N  V  H  G  D  K  K  *  Q  K  T  E   : G  T  I  H  *  S  T  F  S  Q  V  S  N  P  S  P  K  N  N  G  N  N  S  *  M  W  R  K  N  A  Y  G  R  A  A  V  G  R  G  S  Y  G  L  L  *  S  F  Q  E  L  *  *  S  W  E  S  E  A  H  P  V  S  K  :  V  L  G  S  G  K  Y  A  D  G  V  *  G  *  P  F  *  W  P  R  S  K  T  :  V  Q  K  *  P  *  D  T  G  N  D  *  P  Y  S  S  I  S  T  K  *  D  L  R  V  *  E  N  S  *   : E  *  *  K  N  N  N  G  *  S  L  H  Q  K  L  H  *  R  S  F  K  K  C  Q  N  P  S  A  A  E  D  H  *  A  L  H  K  N  P  D  S  L  H  F  Q   : G  A  *  C  A  R  K  R  R  R  G  V  V  G  L  T  H  L  G  Q  P  Y  Q  W  A  H  *  S  S  E  P  V  A  R  M  W  R  *  :  I  *  R  N  E  E  I  R  C  H  R  Q  M  E  H  T   </second_frame>
            <third_frame>   S  S  L  H  P  Q  L  K  N  L  L  H  *  S  S  F  S  S  L  L  *  S  A  M  G  S   : D  A  D  M  E  D  Y  G  F  E  Y  S  E  E  E  P  E  E  Q  D  V  D  I  E  N  Q  Y  Y  N  S  K   : G  L  A  E  T  D  P  E  A  A  L  E  G  F  A  E  V  V  R  M  E  P  E  K  A  D  W :   G  F  K  A  L  K  Q  T  V  K  L  Y  Y  K  L  G  K  Y  K  G  M  M  D  A  Y  R  E  M  L  T  Y  I  K  S  A  V  T  R  N  Y  S  E  K  C  I  N  N  I  M  D  F  V  S  G  S  A  S  Q  N  F  D  L  L  Q  E  F  Y  Q  T  T  L  K  A  L  E  E  A  K  N  E  :  R  L  W  F  K  T  N  L  K  L  C  K  I  W  F  D  I  G  E  Y  G  R  M  N  K  :  I  L  K  E  L  H  K  S  C  Q  K  E  D  G  T  D  D  Q  K  K  G  T  Q  L  L  E  V  Y  A  I  E  I  Q  M  Y  T  E  T  K  N  N  K  K  L  K  :  E  L  Y  T  K  A  L  S  V  K  S  A  I  P  H  P  R  I  M  G  I  I  R  E  C  G  G  K  M  H  M  A  E  R  Q  W  A  E  A  A  T  D  F  F  E  A  F  K  N  Y  D  E  A  G  N  Q  R  R  I  Q  C  L  K :   Y  L  V  L  A  N  M  L  M  E  S  E  V  N  P  F  D  G  Q  E  A  K  P :   Y  K  N  D  P  E  I  L  A  M  T  N  L  I  A  A  Y  Q  R  N  E  I  L  E  F  E  K  I  L  K  :  S  N  R  R  T  I  M  D  D  P  F  I  R  N  Y  I  E  D  L  L  R  N  V  R  T  Q  V  L  L  K  I  I  K  P  Y  T  R  I  R  I  P  F  I  S  K  :  E  L  N  V  P  E  K  D  V  G  E  L  L  V  S  L  I  L  D  N  R  I  N  G  H  I  D  Q  V  N  R  L  L  E  C  G  D  R :   S  K  G  M  K  K  Y  A  A  I  D  K  W  N  T  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109099" stop="109084"/>
                    <exon start="108990" stop="108898"/>
                    <exon start="106761" stop="106683"/>
                    <exon start="105783" stop="105543"/>
                    <exon start="105442" stop="105368"/>
                    <exon start="105284" stop="105150"/>
                    <exon start="104444" stop="104257"/>
                    <exon start="103418" stop="103350"/>
                    <exon start="103203" stop="103113"/>
                    <exon start="103020" stop="102886"/>
                    <exon start="102389" stop="102277"/>
                    <exon start="102188" stop="102140"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1284</number_coding_nucleotides>
                  <number_encoded_amino_acids>428</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAMGSDADMEDYGFEYSEEEPEEQDVDIENQYYNSKGLAETDPEAALEGFAEVVRMEPEKADWGFKALKQTVKLYYKLGKYKGMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFDLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDIGEYGRMNKILKELHKSCQKEDGTDDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYTKALSVKSAIPHPRIMGIIRECGGKMHMAERQWAEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLRNVRTQVLLKIIKPYTRIRIPFISKELNVPEKDVGELLVSLILDNRINGHIDQVNRLLECGDRSKGMKKYAAIDKWNTQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109165" e_stop="109084"/>
            <exon e_start="108984" e_stop="108898"/>
            <exon e_start="106761" e_stop="106683"/>
            <exon e_start="105783" e_stop="105543"/>
            <exon e_start="105442" e_stop="105368"/>
            <exon e_start="105284" e_stop="105150"/>
            <exon e_start="104444" e_stop="104257"/>
            <exon e_start="103418" e_stop="103350"/>
            <exon e_start="103203" e_stop="103113"/>
            <exon e_start="103020" e_stop="102886"/>
            <exon e_start="102389" e_stop="102277"/>
            <exon e_start="102188" e_stop="102139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.712" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.178" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109165" e_stop="109084" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109083" i_stop="108985" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108984" e_stop="108898" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108897" i_stop="106762" i_length="2136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106761" e_stop="106683" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.895">
            <gDNA_intron_boundary i_start="106682" i_stop="105784" i_length="899"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105783" e_stop="105543" e_length="241"/>
          </exon>
          <intron i_serial="4" don_prob="0.712" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105542" i_stop="105443" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105442" e_stop="105368" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.178">
            <gDNA_intron_boundary i_start="105367" i_stop="105285" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105284" e_stop="105150" e_length="135"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="105149" i_stop="104445" i_length="705"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104444" e_stop="104257" e_length="188"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104256" i_stop="103419" i_length="838"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="103418" e_stop="103350" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.919" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103349" i_stop="103204" i_length="146"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="103203" e_stop="103113" e_length="91"/>
          </exon>
          <intron i_serial="9" don_prob="0.984" acc_prob="0.987">
            <gDNA_intron_boundary i_start="103112" i_stop="103021" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="103020" e_stop="102886" e_length="135"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="102885" i_stop="102390" i_length="496"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="102389" e_stop="102277" e_length="113"/>
          </exon>
          <intron i_serial="11" don_prob="0.919" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102276" i_stop="102189" i_length="88"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="102188" e_stop="102139" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109165" stop="109084"/>
              <exon start="108984" stop="108898"/>
              <exon start="106761" stop="106683"/>
              <exon start="105783" stop="105543"/>
              <exon start="105442" stop="105368"/>
              <exon start="105284" stop="105150"/>
              <exon start="104444" stop="104386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106739" stop="106683"/>
              <exon start="105783" stop="105543"/>
              <exon start="105442" stop="105368"/>
              <exon start="105284" stop="105272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105763" stop="105543"/>
              <exon start="105442" stop="105368"/>
              <exon start="105284" stop="105150"/>
              <exon start="104444" stop="104286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105626" stop="105543"/>
              <exon start="105442" stop="105368"/>
              <exon start="105284" stop="105150"/>
              <exon start="104444" stop="104424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105432" stop="105368"/>
              <exon start="105284" stop="105150"/>
              <exon start="104444" stop="104257"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104435" stop="104257"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103113"/>
              <exon start="103020" stop="102886"/>
              <exon start="102389" stop="102277"/>
              <exon start="102188" stop="102144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104435" stop="104257"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103113"/>
              <exon start="103020" stop="102886"/>
              <exon start="102389" stop="102300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104429" stop="104257"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103113"/>
              <exon start="103020" stop="102886"/>
              <exon start="102389" stop="102303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104364" stop="104257"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103113"/>
              <exon start="103020" stop="102886"/>
              <exon start="102389" stop="102277"/>
              <exon start="102188" stop="102139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTTCACTTCATCCACAGCTCAAAAATCTCCTCCATTAATCTTCGTTTTCGAGTCTTCTCTAATCAGCCATGGGCTCTG : ATATGGAGGACTATGGATTCGAGTATTCAGAGGAGGAACCTGAAGAGCAGGATGTTGATATTGAGAACCAATACTACAACTCCAAAG : GCTTGGCTGAAACAGACCCAGAGGCAGCACTTGAGGGTTTTGCTGAAGTAGTTCGTATGGAACCTGAGAAGGCTGATTG : GGGATTTAAAGCCTTAAAGCAAACTGTTAAGCTTTACTATAAGCTAGGGAAGTACAAGGGAATGATGGACGCTTACAGAGAAATGCTAACCTACATCAAGTCAGCTGTGACAAGAAATTATAGTGAAAAGTGTATAAACAATATCATGGATTTCGTCTCAGGATCAGCTAGTCAGAACTTTGATCTCCTACAAGAGTTCTACCAAACAACATTGAAAGCCCTTGAAGAGGCAAAAAACGAG : AGGTTGTGGTTCAAGACAAATCTAAAACTTTGCAAAATATGGTTTGACATTGGGGAGTATGGACGAATGAATAAG : ATTTTGAAAGAACTCCACAAATCTTGTCAAAAAGAAGATGGTACTGATGACCAGAAGAAAGGTACACAATTGTTGGAGGTATATGCAATAGAGATCCAAATGTACACGGAGACAAAAAATAACAAAAAACTGAAG : GAACTATACACTAAAGCACTTTCAGTCAAGTCAGCAATCCCTCACCCAAGAATAATGGGAATAATTCGTGAATGTGGAGGAAAAATGCATATGGCAGAGCGGCAGTGGGCAGAGGCAGCTACGGACTTCTTTGAAGCTTTCAAGAACTATGATGAAGCTGGGAATCAGAGGCGCATCCAGTGTCTAAA : GTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACC : GTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAG : AGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAG : GAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAACCGGTTGCTAGAATGTGGAGATAG : ATCTAAAGGAATGAAGAAATACGCTGCCATCGACAAATGGAACACACAAC</gDNA_template>
            <first_frame> L  S  S  L  H  P  Q  L  K  N  L  L  H  *  S  S  F  S  S  L  L  *  S  A  M  G  S   : D  M  E  D  Y  G  F  E  Y  S  E  E  E  P  E  E  Q  D  V  D  I  E  N  Q  Y  Y  N  S  K   : G  L  A  E  T  D  P  E  A  A  L  E  G  F  A  E  V  V  R  M  E  P  E  K  A  D  W :   G  F  K  A  L  K  Q  T  V  K  L  Y  Y  K  L  G  K  Y  K  G  M  M  D  A  Y  R  E  M  L  T  Y  I  K  S  A  V  T  R  N  Y  S  E  K  C  I  N  N  I  M  D  F  V  S  G  S  A  S  Q  N  F  D  L  L  Q  E  F  Y  Q  T  T  L  K  A  L  E  E  A  K  N  E  :  R  L  W  F  K  T  N  L  K  L  C  K  I  W  F  D  I  G  E  Y  G  R  M  N  K  :  I  L  K  E  L  H  K  S  C  Q  K  E  D  G  T  D  D  Q  K  K  G  T  Q  L  L  E  V  Y  A  I  E  I  Q  M  Y  T  E  T  K  N  N  K  K  L  K  :  E  L  Y  T  K  A  L  S  V  K  S  A  I  P  H  P  R  I  M  G  I  I  R  E  C  G  G  K  M  H  M  A  E  R  Q  W  A  E  A  A  T  D  F  F  E  A  F  K  N  Y  D  E  A  G  N  Q  R  R  I  Q  C  L  K :   Y  L  V  L  A  N  M  L  M  E  S  E  V  N  P  F  D  G  Q  E  A  K  P :   Y  K  N  D  P  E  I  L  A  M  T  N  L  I  A  A  Y  Q  R  N  E  I  L  E  F  E  K  I  L  K  :  S  N  R  R  T  I  M  D  D  P  F  I  R  N  Y  I  E  D  L  L  R  N  V  R  T  Q  V  L  L  K  I  I  K  P  Y  T  R  I  R  I  P  F  I  S  K  :  E  L  N  V  P  E  K  D  V  G  E  L  L  V  S  L  I  L  D  N  R  I  N  G  H  I  D  Q  V  N  R  L  L  E  C  G  D  R :   S  K  G  M  K  K  Y  A  A  I  D  K  W  N  T  Q  </first_frame>
            <second_frame>  S  L  H  F  I  H  S  S  K  I  S  S  I  N  L  R  F  R  V  F  S  N  Q  P  W  A  L  :  I  W  R  T  M  D  S  S  I  Q  R  R  N  L  K  S  R  M  L  I  L  R  T  N  T  T  T  P  K  :  A  W  L  K  Q  T  Q  R  Q  H  L  R  V  L  L  K  *  F  V  W  N  L  R  R  L  I   : G  D  L  K  P  *  S  K  L  L  S  F  T  I  S  *  G  S  T  R  E  *  W  T  L  T  E  K  C  *  P  T  S  S  Q  L  *  Q  E  I  I  V  K  S  V  *  T  I  S  W  I  S  S  Q  D  Q  L  V  R  T  L  I  S  Y  K  S  S  T  K  Q  H  *  K  P  L  K  R  Q  K  T  R :   G  C  G  S  R  Q  I  *  N  F  A  K  Y  G  L  T  L  G  S  M  D  E  *  I  R :   F  *  K  N  S  T  N  L  V  K  K  K  M  V  L  M  T  R  R  K  V  H  N  C  W  R  Y  M  Q  *  R  S  K  C  T  R  R  Q  K  I  T  K  N  *  R :   N  Y  T  L  K  H  F  Q  S  S  Q  Q  S  L  T  Q  E  *  W  E  *  F  V  N  V  E  E  K  C  I  W  Q  S  G  S  G  Q  R  Q  L  R  T  S  L  K  L  S  R  T  M  M  K  L  G  I  R  G  A  S  S  V  *   : S  T  W  F  W  Q  I  C  *  W  S  L  R  L  T  L  L  M  A  K  K  Q  N   : R  T  K  M  T  L  R  Y  W  Q  *  L  T  L  *  Q  H  I  N  E  M  R  S  *  S  L  R  K  F  L  R :   V  I  E  E  Q  *  W  M  I  P  S  S  E  I  T  L  K  I  F  *  E  M  S  E  P  K  C  C  *  R  S  L  S  L  T  Q  E  S  G  F  P  S  F  P  R :   S  L  M  C  Q  K  K  T  S  G  S  C  W  S  H  S  S  W  T  T  V  S  M  G  T  L  I  K  *  T  G  C  *  N  V  E  I   : D  L  K  E  *  R  N  T  L  P  S  T  N  G  T  H  N </second_frame>
            <third_frame>   L  F  T  S  S  T  A  Q  K  S  P  P  L  I  F  V  F  E  S  S  L  I  S  H  G  L  * :   Y  G  G  L  W  I  R  V  F  R  G  G  T  *  R  A  G  C  *  Y  *  E  P  I  L  Q  L  Q  R :   L  G  *  N  R  P  R  G  S  T  *  G  F  C  *  S  S  S  Y  G  T  *  E  G  *  L  :  G  I  *  S  L  K  A  N  C  *  A  L  L  *  A  R  E  V  Q  G  N  D  G  R  L  Q  R  N  A  N  L  H  Q  V  S  C  D  K  K  L  *  *  K  V  Y  K  Q  Y  H  G  F  R  L  R  I  S  *  S  E  L  *  S  P  T  R  V  L  P  N  N  I  E  S  P  *  R  G  K  K  R   : E  V  V  V  Q  D  K  S  K  T  L  Q  N  M  V  *  H  W  G  V  W  T  N  E  *   : D  F  E  R  T  P  Q  I  L  S  K  R  R  W  Y  *  *  P  E  E  R  Y  T  I  V  G  G  I  C  N  R  D  P  N  V  H  G  D  K  K  *  Q  K  T  E   : G  T  I  H  *  S  T  F  S  Q  V  S  N  P  S  P  K  N  N  G  N  N  S  *  M  W  R  K  N  A  Y  G  R  A  A  V  G  R  G  S  Y  G  L  L  *  S  F  Q  E  L  *  *  S  W  E  S  E  A  H  P  V  S  K  :  V  L  G  S  G  K  Y  A  D  G  V  *  G  *  P  F  *  W  P  R  S  K  T  :  V  Q  K  *  P  *  D  T  G  N  D  *  P  Y  S  S  I  S  T  K  *  D  L  R  V  *  E  N  S  *   : E  *  *  K  N  N  N  G  *  S  L  H  Q  K  L  H  *  R  S  F  K  K  C  Q  N  P  S  A  A  E  D  H  *  A  L  H  K  N  P  D  S  L  H  F  Q   : G  A  *  C  A  R  K  R  R  R  G  V  V  G  L  T  H  L  G  Q  P  Y  Q  W  A  H  *  S  S  E  P  V  A  R  M  W  R  *  :  I  *  R  N  E  E  I  R  C  H  R  Q  M  E  H  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109099" stop="109084"/>
                    <exon start="108984" stop="108898"/>
                    <exon start="106761" stop="106683"/>
                    <exon start="105783" stop="105543"/>
                    <exon start="105442" stop="105368"/>
                    <exon start="105284" stop="105150"/>
                    <exon start="104444" stop="104257"/>
                    <exon start="103418" stop="103350"/>
                    <exon start="103203" stop="103113"/>
                    <exon start="103020" stop="102886"/>
                    <exon start="102389" stop="102277"/>
                    <exon start="102188" stop="102140"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1278</number_coding_nucleotides>
                  <number_encoded_amino_acids>426</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAMGSDMEDYGFEYSEEEPEEQDVDIENQYYNSKGLAETDPEAALEGFAEVVRMEPEKADWGFKALKQTVKLYYKLGKYKGMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFDLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDIGEYGRMNKILKELHKSCQKEDGTDDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYTKALSVKSAIPHPRIMGIIRECGGKMHMAERQWAEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLRNVRTQVLLKIIKPYTRIRIPFISKELNVPEKDVGELLVSLILDNRINGHIDQVNRLLECGDRSKGMKKYAAIDKWNTQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="103862" e_stop="103594"/>
            <exon e_start="103418" e_stop="103350"/>
            <exon e_start="103203" e_stop="103113"/>
            <exon e_start="103020" e_stop="102886"/>
            <exon e_start="102389" e_stop="102277"/>
            <exon e_start="102188" e_stop="102161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="0.903"/>
          <exon-intron don_prob="0.919" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="0.985"/>
          <exon-intron don_prob="0.919" acc_prob="1.000" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="103862" e_stop="103594" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103593" i_stop="103419" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103418" e_stop="103350" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.919" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103349" i_stop="103204" i_length="146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103203" e_stop="103113" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.987">
            <gDNA_intron_boundary i_start="103112" i_stop="103021" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="103020" e_stop="102886" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="102885" i_stop="102390" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="102389" e_stop="102277" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.919" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102276" i_stop="102189" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102188" e_stop="102161" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103862" stop="103594"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103113"/>
              <exon start="103020" stop="102886"/>
              <exon start="102389" stop="102277"/>
              <exon start="102188" stop="102161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103861" stop="103594"/>
              <exon start="103418" stop="103350"/>
              <exon start="103203" stop="103113"/>
              <exon start="103020" stop="102913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358857" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATTCTTTAACACCCCACCATGCTTTGATACCATGTGAAATTAGGTCTTAGGCATAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCCAAACCTTATAAGGAGTCCACCCATTTCATTAACCGCCAATGTGGGACTTTTTGTCATTCTTTAACATGTTAAATTAGATATTAGGCCTTACTGACACCCCAAAAGCTTAGCTCAATGGTGGAGCAGATTATGACTAAATCTGCCAACTCATTCAACACTGTTTAAGGGG : GTACTTGGTTCTGGCAAATATGCTGATGGAGTCTGAGGTTAACCCTTTTGATGGCCAAGAAGCAAAACC : GTACAAAAATGACCCTGAGATACTGGCAATGACTAACCTTATAGCAGCATATCAACGAAATGAGATCTTAGAGTTTGAGAAAATTCTTAAG : AGTAATAGAAGAACAATAATGGATGATCCCTTCATCAGAAATTACATTGAAGATCTTTTAAGAAATGTCAGAACCCAAGTGCTGCTGAAGATCATTAAGCCTTACACAAGAATCCGGATTCCCTTCATTTCCAAG : GAGCTTAATGTGCCAGAAAAAGACGTCGGGGAGTTGTTGGTCTCACTCATCTTGGACAACCGTATCAATGGGCACATTGATCAAGTGAACCGGTTGCTAGAATGTGGAGATAG : ATCTAAAGGAATGAAGAAATACGCTGCC</gDNA_template>
            <first_frame> V  I  L  *  H  P  T  M  L  *  Y  H  V  K  L  G  L  R  H  N  S  H  P  K  S  *  L  K  G  R  R  I  A  Q  T  L  *  G  V  H  P  F  H  *  P  P  M  W  D  F  L  S  F  F  N  M  L  N  *  I  L  G  L  T  D  T  P  K  A  *  L  N  G  G  A  D  Y  D  *  I  C  Q  L  I  Q  H  C  L  R  G :   Y  L  V  L  A  N  M  L  M  E  S  E  V  N  P  F  D  G  Q  E  A  K  P :   Y  K  N  D  P  E  I  L  A  M  T  N  L  I  A  A  Y  Q  R  N  E  I  L  E  F  E  K  I  L  K  :  S  N  R  R  T  I  M  D  D  P  F  I  R  N  Y  I  E  D  L  L  R  N  V  R  T  Q  V  L  L  K  I  I  K  P  Y  T  R  I  R  I  P  F  I  S  K  :  E  L  N  V  P  E  K  D  V  G  E  L  L  V  S  L  I  L  D  N  R  I  N  G  H  I  D  Q  V  N  R  L  L  E  C  G  D  R :   S  K  G  M  K  K  Y  A  A </first_frame>
            <second_frame>  S  F  F  N  T  P  P  C  F  D  T  M  *  N  *  V  L  G  I  T  H  T  P  K  A  S  S  K  G  G  G  L  P  K  P  Y  K  E  S  T  H  F  I  N  R  Q  C  G  T  F  C  H  S  L  T  C  *  I  R  Y  *  A  L  L  T  P  Q  K  L  S  S  M  V  E  Q  I  M  T  K  S  A  N  S  F  N  T  V  *  G   : G  T  W  F  W  Q  I  C  *  W  S  L  R  L  T  L  L  M  A  K  K  Q  N   : R  T  K  M  T  L  R  Y  W  Q  *  L  T  L  *  Q  H  I  N  E  M  R  S  *  S  L  R  K  F  L  R :   V  I  E  E  Q  *  W  M  I  P  S  S  E  I  T  L  K  I  F  *  E  M  S  E  P  K  C  C  *  R  S  L  S  L  T  Q  E  S  G  F  P  S  F  P  R :   S  L  M  C  Q  K  K  T  S  G  S  C  W  S  H  S  S  W  T  T  V  S  M  G  T  L  I  K  *  T  G  C  *  N  V  E  I   : D  L  K  E  *  R  N  T  L   </second_frame>
            <third_frame>   H  S  L  T  P  H  H  A  L  I  P  C  E  I  R  S  *  A  *  L  T  P  Q  K  L  A  Q  R  E  E  D  C  P  N  L  I  R  S  P  P  I  S  L  T  A  N  V  G  L  F  V  I  L  *  H  V  K  L  D  I  R  P  Y  *  H  P  K  S  L  A  Q  W  W  S  R  L  *  L  N  L  P  T  H  S  T  L  F  K  G  :  V  L  G  S  G  K  Y  A  D  G  V  *  G  *  P  F  *  W  P  R  S  K  T  :  V  Q  K  *  P  *  D  T  G  N  D  *  P  Y  S  S  I  S  T  K  *  D  L  R  V  *  E  N  S  *   : E  *  *  K  N  N  N  G  *  S  L  H  Q  K  L  H  *  R  S  F  K  K  C  Q  N  P  S  A  A  E  D  H  *  A  L  H  K  N  P  D  S  L  H  F  Q   : G  A  *  C  A  R  K  R  R  R  G  V  V  G  L  T  H  L  G  Q  P  Y  Q  W  A  H  *  S  S  E  P  V  A  R  M  W  R  *  :  I  *  R  N  E  E  I  R  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0029C01.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103625" stop="103594"/>
                    <exon start="103418" stop="103350"/>
                    <exon start="103203" stop="103113"/>
                    <exon start="103020" stop="102886"/>
                    <exon start="102389" stop="102277"/>
                    <exon start="102188" stop="102161"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICQLIQHCLRGYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLRNVRTQVLLKIIKPYTRIRIPFISKELNVPEKDVGELLVSLILDNRINGHIDQVNRLLECGDRSKGMKKYAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 320 chains have been computed
$ 
$ memory statistics:
$ 212792 bytes spliced alignments in total
$ 97 spliced alignments have been stored
$ 2193 bytes was the average size of a spliced alignment
$ 29664 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1648 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 379 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:39:09
-->
