GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 21 22:28:52 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-tRQ6a/C10SLe0045H11/C10SLe0045H11.seq.screen ________________________________________________________________________________ Sequence 1: C10SLe0045H11.1, from 1 to 109965, both strands analyzed. ... started at: Mon Aug 21 22:52:51 2006 EST library file: /tmp/cxgn-bacpublish-resources-ZXvsKU/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 50 EST library file: /tmp/cxgn-bacpublish-resources-ZXvsKU/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 104 ******************************************************************************** EST sequence 27 +strand 559 n (File: SGN-E244515+) 1 ATCACTCGAC GGAGAAGAAG ATAAAGGAAC AACTTGATTC TCATCGTCAT AATCATCGAT 61 TTCACTGAAT TGCAGAGAGA GAAAGTAGGA GAAAGCTTTG GACCAGAGGC ATTCCATGGA 121 GTTGAATTTT GACATGAATG ACAAAGGAGA TTTCTCGAGT GTTTAGCTAC GAGAAAATTA 181 GCAGAATGAA CTTTCGAATC GCAATCCCAG CAAAGCCAAA TCACAGAGTT GACAGCAGTG 241 TGCCACATTT TACATTATAA AACATGAAAG GGTCTTTCAT TTCAATTAGA AAATGGAACA 301 AACTGATAAC CAGCAGCAAA TTGCATAAAT TTACATATAA AGACCCGAAA ATAACTAAGC 361 AAACATTAGG ATGAATTTTG CACATACCTT GACGACCATC ACAAGCATCA TGGTACTCGC 421 CTTCCTCCTC GTTTTCTTTT GAGGCAGATG CCACAGGAAC TCCGCCCTTA CGAGCAGCAT 481 TTCCACCATC CTTCTCATCA GGATACCTCA CAACCACAAC AGGGCAAACA CAATGCCTAA 541 CACAGTAATC ACTAACACT Predicted gene structure (within gDNA segment 1044 to 9331): Exon 1 1644 1709 ( 66 n); cDNA 1 66 ( 66 n); score: 1.000 Intron 1 1710 1812 ( 103 n); Pd: 0.866 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 1813 1961 ( 149 n); cDNA 67 215 ( 149 n); score: 1.000 Intron 2 1962 8377 (6416 n); Pd: 0.988 (s: 1.00), Pa: 0.383 (s: 1.00) Exon 3 8378 8721 ( 344 n); cDNA 216 559 ( 344 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E244515+ 1.000 559 1.000 C PGS_C10SLe0045H11.1+_SGN-E244515+ (1644 1709,1813 1961,8378 8721) Alignment (genomic DNA sequence = upper lines): ATCACTCGAC GGAGAAGAAG ATAAAGGAAC AACTTGATTC TCATCGTCAT AATCATCGAT 1703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACTCGAC GGAGAAGAAG ATAAAGGAAC AACTTGATTC TCATCGTCAT AATCATCGAT 60 TTCACTGTCA GTACTCACGT ATTCATCTTC ATCATTATCC GCTTCGGTTT GATAATTTTC 1763 |||||| TTCACT.... .......... .......... .......... .......... .......... 66 TTCGATTGTT TCCCCAATTT GTTCAATTGG ATCTGGGTTT TGGATGCAGG AATTGCAGAG 1823 | |||||||||| .......... .......... .......... .......... .........G AATTGCAGAG 77 AGAGAAAGTA GGAGAAAGCT TTGGACCAGA GGCATTCCAT GGAGTTGAAT TTTGACATGA 1883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAAAGTA GGAGAAAGCT TTGGACCAGA GGCATTCCAT GGAGTTGAAT TTTGACATGA 137 ATGACAAAGG AGATTTCTCG AGTGTTTAGC TACGAGAAAA TTAGCAGAAT GAACTTTCGA 1943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGACAAAGG AGATTTCTCG AGTGTTTAGC TACGAGAAAA TTAGCAGAAT GAACTTTCGA 197 ATCGCAATCC CAGCAAAGGT TAGCTTGATC TGATTCACAA TACATCATTG ATTTGTTCTC 2003 |||||||||| |||||||| ATCGCAATCC CAGCAAAG.. .......... .......... .......... .......... 215 ACCACATAAC TCACAATTCA TCATCTTCAC TTCTCTTTCT ATCAATCAAA AAATTCAAAC 2063 .......... .......... .......... .......... .......... .......... 215 AATTTTAGGG TTTTTTTTGA AAGGAATGTT TAAAATTGGG GGTTTTGGAG TTTTTGAATA 2123 .......... .......... .......... .......... .......... .......... 215 GAGAGAAAAT TGCAACTATT TTTATACTAG TATATATATA TTTGATATTT TTCATGGGTG 2183 .......... .......... .......... .......... .......... .......... 215 GGGGTGGGGT GGGTTATGAA AGTTTTTCTT TTACCAAAAT GGAGTATTTG TTTGGTGTTT 2243 .......... .......... .......... .......... .......... .......... 215 GGTTCGAGAT TGAAAAAAGT TATTGAGTTT ACGTGAAGGA GTTATCGCCA GTATGAAAAT 2303 .......... .......... .......... .......... .......... .......... 215 GATAATGGGA TATAGAAAGG AGATTTTCGT GTTAGGGGTT CGATATTGAG TTTAGTACTT 2363 .......... .......... .......... .......... .......... .......... 215 GTTTACGATA GTTGTTAAAT GAGCGAATCA ACAAGATATA ATATATGATT TCAATGTTCT 2423 .......... .......... .......... .......... .......... .......... 215 GAATTTACTT TTAGTAATTG AAGGGAGATA AGAGATGGAG TAGGTGAAAT TCATTCAGTT 2483 .......... .......... .......... .......... .......... .......... 215 TGAGAGATAA TCAACAAGAT ATAAGATGTG ATTCCGACTT TATGAATCAC TTTCAGTAAT 2543 .......... .......... .......... .......... .......... .......... 215 TAGAGGTGGA TCGGGGATTA AGCAGGTCAT GGTCATTCTA TTTGAGGGAT AATCAACAAG 2603 .......... .......... .......... .......... .......... .......... 215 ATACAAGATG TGATTTTGAT CTTAAGAATC ATTTTCGGTA ATGAAAAACA GATCAAGAGT 2663 .......... .......... .......... .......... .......... .......... 215 TGAGCAAGTT AGTTCGTTCA GTTTGAAGAA TAAATTATAT GATTGATTTG TCAATTTTAG 2723 .......... .......... .......... .......... .......... .......... 215 CATTTCCATT TCAATCATTG CTCGCTCGTG ACTTGATTTC AGATCGTGAA TATGCTATTA 2783 .......... .......... .......... .......... .......... .......... 215 GCTAGCAATT TTGTGTTGAT TATTGAAATT AATGAGGGTA TGAATTAAAA AATTTGAACT 2843 .......... .......... .......... .......... .......... .......... 215 ACAAAGAAGT AAAGATTTAT TTAGTTAATA AAATATGATG TAACAATCTT GAGATAAAAT 2903 .......... .......... .......... .......... .......... .......... 215 GTAAAATTAT TGAACTATAC TTGATAAAAA ATACTAATCA GTTTTGTGAT TAATTATTTC 2963 .......... .......... .......... .......... .......... .......... 215 GTAAAAAGGT TAAATAGTTA ATCTCATAGA ATATGTCAAA CTTATCTCAA CCACAAAATA 3023 .......... .......... .......... .......... .......... .......... 215 GCTTCTTCTA TTCAATTCAA AATAACCAAA CAATTCATAA GAACTTTAAA ATAAAGTAGA 3083 .......... .......... .......... .......... .......... .......... 215 CATAAGAATC AAAACATACA CTATAAATTT AATTAGCAAA AGAAGAGTAT TATATTTACC 3143 .......... .......... .......... .......... .......... .......... 215 TAATAACTCG TGTCTTATAA AGCTCATTCA AAATAAATCG TATTAGAATT TTTTTATTTT 3203 .......... .......... .......... .......... .......... .......... 215 ACTTCCATTG AAGGTCGTAA GATTATAGTA GGTATTTTTT TTATAATCAC GCTATTCAAT 3263 .......... .......... .......... .......... .......... .......... 215 CAAGATTACA TATACCTCGA TTAATTTTAC GAAGTATCTA TCAGGTATCA CGTCTTATCA 3323 .......... .......... .......... .......... .......... .......... 215 GCGACATGTA CTAAATAACT CTATCCACCA AAATTAAAAA TAAAATAAAA AGAAATCATC 3383 .......... .......... .......... .......... .......... .......... 215 TAGCGTATTT TATCTCTATT GAAAAGATTA TATAAGATAC ATTTACTATT TATAAATCAG 3443 .......... .......... .......... .......... .......... .......... 215 AAACAAATAT ACAATTTGAA TTATAAATTC AATCAAAATC TAATAAATTC AGCCTAAACC 3503 .......... .......... .......... .......... .......... .......... 215 TTATCTTAAT ATAATTATAT AACTCAAAAT GGCTAAAAAT TCAAAATCAT CTTTATTGTG 3563 .......... .......... .......... .......... .......... .......... 215 AGAGAGGCTA TGTATGTTAT TTTTATTATT TTATTTTATC TTTATGTAAA TTGAAACTAA 3623 .......... .......... .......... .......... .......... .......... 215 AAGAAGATAA TTGGTAGCTT TCATTACTCT AAAATTGAAA GGATATATTT TTTTTAAAAT 3683 .......... .......... .......... .......... .......... .......... 215 GCAAGGGGCT ATGTATAGCC TAAGTTATTA TTATATATAA TATAATATAA TATAATATAA 3743 .......... .......... .......... .......... .......... .......... 215 TATAATATAA TATAATATAA ACATATAATA ACCAATGAAT TTAAGTTCTA GTCACATTTG 3803 .......... .......... .......... .......... .......... .......... 215 CTTACATGGC CATTTTTAGT CCACATAAAA GATTGAACCA TGTGAAGTCC ACCTTCTACC 3863 .......... .......... .......... .......... .......... .......... 215 CATAATCCAA AAAATATATA TTCATATCTA TCTTTGGAGT ATGGGCCTTT TATATTATTA 3923 .......... .......... .......... .......... .......... .......... 215 TTATTATTAT CTTGATTCTT GAATTATTAG CCAAATAAAA AAACTTTTAT TTTTTATTTT 3983 .......... .......... .......... .......... .......... .......... 215 TTTGGTTACA ATTGAAAGAA AAAAAAAACA ATTGTTTTGG ATAAGGGGAC AAAAGGGAAA 4043 .......... .......... .......... .......... .......... .......... 215 AAGAATTGAC TTGGATAAGG GTGTCAAAAT AATCTAACCC TAATCTACAT GCTCTATCTT 4103 .......... .......... .......... .......... .......... .......... 215 ATCTTGGATT AATTAAAAAA AAAAGATAGA GAGAATGAAA CGACACCGTT TTTATTATTA 4163 .......... .......... .......... .......... .......... .......... 215 TCTCGTGAAG ATAAAAAAAT TAGTTTTAAT TATCGATAGA AAGAATAGAA TGACACCATT 4223 .......... .......... .......... .......... .......... .......... 215 CTTATTATTA TCTCGTGAAG ATAAAGAAAT TATTTCTAAT TATTGTATGA TGTACAATAA 4283 .......... .......... .......... .......... .......... .......... 215 TTTTATTTAT AAAAGAAGAA ATTATAAAGT AATATATAGT CACAAGATAA GATTTTTTAA 4343 .......... .......... .......... .......... .......... .......... 215 AATTTATGAT TTTAATTTGT ATGGGATGAG GAATAATAAA AAAATACTTG GTGGACAATT 4403 .......... .......... .......... .......... .......... .......... 215 TTTTTTGTTT ATTTTAATTG ATGACATGGA ATTTTAGACC ACGTGAACAT GTCTGATGTG 4463 .......... .......... .......... .......... .......... .......... 215 GCATCAAATG AGTATAATTC TCCTTCCTCG AGATTCTAGC CTTGCTGACA TGGACAAAGC 4523 .......... .......... .......... .......... .......... .......... 215 TTAACTTTGT CGACTTCAAT TTTACGTACG TGATACTTTT CGGATATCAA AATTTGAATA 4583 .......... .......... .......... .......... .......... .......... 215 AATCTATCTT TAATAGTAAA TATTTTATAA ATTTTTTGAA CATTTTGAAT TATCAATCAT 4643 .......... .......... .......... .......... .......... .......... 215 TCTGAATTAT AGTACTTTTT ACGTAATTTA AAAATATATA ATTTATATTT CAAAATTAAT 4703 .......... .......... .......... .......... .......... .......... 215 TTTTAATCAA ATTTAAACTG TTTAATTTTT AAAAAATGAA AAGTATCACG TAAATTGAAA 4763 .......... .......... .......... .......... .......... .......... 215 TAAAATAAAG TATTTTTTAA AAAGGAGTGA TGAGTAAATA TAATTAATTT TGATAAGGTA 4823 .......... .......... .......... .......... .......... .......... 215 GAGTTAATTA TAGTTCCAAA GTATGATTGG ATGAATATAT TTATTGAGAA TTATTTGAAA 4883 .......... .......... .......... .......... .......... .......... 215 ATAACTTATT TTTGATAATA GAGAGATAAA TATTATCACT TTTCGTATAT TATTTTATTC 4943 .......... .......... .......... .......... .......... .......... 215 TTTGATTTGT GGATAAGAGG TGCTTTGCAT CAAGACCAAT GAGACTATCT CCATTATTTA 5003 .......... .......... .......... .......... .......... .......... 215 CGATAATTGA AGAGTATATA TTTTTTCTTA TTTATTTTAC ATAAGGTACA TTATTTATAT 5063 .......... .......... .......... .......... .......... .......... 215 TTGTATAAGT AATGTGAAAT AATATATAAG ACTGTATAAA TTTTATTTTA TCATTTCAAT 5123 .......... .......... .......... .......... .......... .......... 215 TTATATGATC GTATTTAACT GAATACAAAA TTTTAAGAAA AGTAAAAAGC ACATTTGATT 5183 .......... .......... .......... .......... .......... .......... 215 TTGTTTTTTA AATTTGCAAT GACTTTTCTA TTTTGTCCCT TAGGAACCCA TCATATACAT 5243 .......... .......... .......... .......... .......... .......... 215 GAACTATGCT CATTCAATTG AATTTATTGT GAGCCTTATA TTCTGCATAA AACAAAATTG 5303 .......... .......... .......... .......... .......... .......... 215 GGAATAAAAT AGCACTTAGA CTTCTACCAC GTGTTGCTCA ATTAGAAAAC ATCAAATGAA 5363 .......... .......... .......... .......... .......... .......... 215 CGGATCGAAC TGAATTTAAA CGATCAAGTG GGATCGAAAG AAAATAATAT GTATATAAAT 5423 .......... .......... .......... .......... .......... .......... 215 TTTATTTCTA TCTAGTTTGC TTTTCTAACC TAATTTTTGA TTGGTTAGAA TGAATTGGAA 5483 .......... .......... .......... .......... .......... .......... 215 ATAATGATCT AAGTTAATAA ATAAATAAAT CAATCGCTAG CTCAAATTCT GAGCTAATTT 5543 .......... .......... .......... .......... .......... .......... 215 TTGTAACCCC TAACCTCAAA TTATAATTCA ATTTATCATA TATTTGAACT TTTAATTTCT 5603 .......... .......... .......... .......... .......... .......... 215 TATTGGATTA TGTTCAACTT TTATGTATAA AGTGGATAAC TTATTAATAA CTACTTTAAG 5663 .......... .......... .......... .......... .......... .......... 215 GGAGCTTGTC CAAACAATGA CATCTTTTTA AAGGCTCTCT CTTGTTCTAA TTTATTTTGC 5723 .......... .......... .......... .......... .......... .......... 215 CTTAAATTTT GTGAATAATC AAAATAATAT GATTAGTCGA GCGAAAAGTC TATCAGAAAC 5783 .......... .......... .......... .......... .......... .......... 215 AATCGTTTTA CCTTTACAAA GCACGAGTGA AGCTGCACAC ACACCACCTT CACTAAACTC 5843 .......... .......... .......... .......... .......... .......... 215 TATTTGTGAA ATTAGATAGC CTAAATCAAA CAATGTGTTT GATATTTTCT TTTGACCAAT 5903 .......... .......... .......... .......... .......... .......... 215 TCTCGATTTG TGCGGATTAT CCTTGCGCAG GGGCCATGCT AATCTTCTCT GTATCGTTCC 5963 .......... .......... .......... .......... .......... .......... 215 AATTTTATCG GATGTCATAT AAATCAAAAT CGACCCCCAC CCCACCCAAC CAAACCCCAT 6023 .......... .......... .......... .......... .......... .......... 215 GCTTTGTCTT ATTTTGATGG GGGGTTGTAT GAGGGAAAGG AGTAATAGGA CCACTGTTTT 6083 .......... .......... .......... .......... .......... .......... 215 CCAAGTGTAA GACTTCAATG TTTCAACAGA CCAAACTTTG TGGTTATTAT TAACTAGGGA 6143 .......... .......... .......... .......... .......... .......... 215 AAGTACATCC CCTCTGCCCA TGCACTTTCT CTTAAATGAT GATATCCCTT TCTTATCTCA 6203 .......... .......... .......... .......... .......... .......... 215 ATTCTTTACT TGGAAGTACA TTCTAGAGAA ACTAGTGACA GCCTGTTTGA TTATTTCCAA 6263 .......... .......... .......... .......... .......... .......... 215 CTTTAGGTCT ACACAGATAG ACGCTTAAAT TCATATAAAG CTTAATAAAG AACTTGCGGA 6323 .......... .......... .......... .......... .......... .......... 215 AGGCAAAGTA TGCATTGCCT TCAGAACAGC GAAAACAGAA ACAAGAACCA ACTGTTCTGG 6383 .......... .......... .......... .......... .......... .......... 215 GCAACAGCAG CATAGAGATT ACATCTTAAA AGTAAGATTT TATATTTGCA CCATAAAGAT 6443 .......... .......... .......... .......... .......... .......... 215 AAGAAGTGAT AAAAAGGGGC AGGTTTAAGT GAAACTCTAT GAAGACAACA ATCTTTAGAG 6503 .......... .......... .......... .......... .......... .......... 215 ATACAACATC ATCTAGCGAA CTACTGTAAA CTAAACTGAA AGACAGGAAA CCACAATTCA 6563 .......... .......... .......... .......... .......... .......... 215 GTTAAAGAAG ATGAGACTCC GGATATAACA AAATACCAAG TGGTTTTCAC ATAAGTCGGC 6623 .......... .......... .......... .......... .......... .......... 215 TAAAAGGATT GCTTAACCCA ACTTCCGCAC CTGGAATCTG TCACCAAAGA AGCGGGAGTA 6683 .......... .......... .......... .......... .......... .......... 215 TCAAAGTCCC AGTTAACAAA GAGAACCATC AAATAACCAT AGAGTCGATA GGGAAGGGAG 6743 .......... .......... .......... .......... .......... .......... 215 TAGAGGATTG ATTTAAAAAC AAGGTTCAAA TGTATAATGC ATGACACAGC TAGAATATTA 6803 .......... .......... .......... .......... .......... .......... 215 ATTGCATAAC TCATAAGATA TCAAGACATA GCTACTTGGT TGCACTGGTT TGCAACTCTC 6863 .......... .......... .......... .......... .......... .......... 215 TCATGCGATC TGCACAGACA AAACCAAATT GTCTTGAAAG ACCTACTATC TCTTGGATAA 6923 .......... .......... .......... .......... .......... .......... 215 AGGAAAGGCC TTTTTGACAT CTCAACCATC CAATTTGATT TTATGTATAA CAATCTTTGT 6983 .......... .......... .......... .......... .......... .......... 215 TTATTATTCC ATTCATCCAA AATAGATTTT GTGTAACATA TTCATATATC ATTTGACTCT 7043 .......... .......... .......... .......... .......... .......... 215 CCAGGAACGT CGAACCTAGA TATTTTGAAT TGTTTGTTTT CCTCCAAAAT CTTTCACAAT 7103 .......... .......... .......... .......... .......... .......... 215 GTGCCCTGAA AAAAATCTCA GTGAAGAGAA ATGATTCATG GCTCATTTAT CTAATCTTTG 7163 .......... .......... .......... .......... .......... .......... 215 GTGACATCAC AAAGTTGATT TGACTTCACA GTTCACCCAC AAATCTAAAA AACCAATTTA 7223 .......... .......... .......... .......... .......... .......... 215 TAGTGGCTAA ACTGCATTTC ATAAACATCG AACCACCAAT TCAAAAGGCA AATCAAGCTT 7283 .......... .......... .......... .......... .......... .......... 215 AGGAGAACAC TAGAAAAATT CCATAAGACC TAAAGTTCAA AAATTGGGAA CTCAAAATGA 7343 .......... .......... .......... .......... .......... .......... 215 ATTGGTTCAA GGTTGAGCTA CGGTTTCCTT AGTCAAAATT GTTATTTCAA CATCATACAA 7403 .......... .......... .......... .......... .......... .......... 215 TGTTTTATTT TCTCCCAAAG TGAAACTTTC ACAACAAAGA TAGCTATCAA CAAATTACAT 7463 .......... .......... .......... .......... .......... .......... 215 CTTCCTCAAA TCTGTCATGG AAACCATGGT TGATAGTCTC ATCCATTGAC CAAGGAAGCA 7523 .......... .......... .......... .......... .......... .......... 215 TTTAGCTTAT TACAGGTTAC AAGGGTGGAG CACACAACCT AGTCCTAAGA AAGCTACTCC 7583 .......... .......... .......... .......... .......... .......... 215 ATTAACTGTT AAAACCAGAA GCAGCCACTA GGGTGCCAAA TTAAATTATT TATAGGAAGA 7643 .......... .......... .......... .......... .......... .......... 215 AAGTTTTTTT TGGTAATAAG GGAGAAACAA TAATAAAAAA ACAAATGGGA AAATATGTGT 7703 .......... .......... .......... .......... .......... .......... 215 AACTTTCATC TAATTGTAGT CCTCTTACAA ACTTATGTTT AAGAGTAAAA AGTAACTGAA 7763 .......... .......... .......... .......... .......... .......... 215 CAAGAACCTT ACTGTCTCAT ACAAAAAGAG ATAGGCCCCA AAAATGAATC ATGCCCTAAA 7823 .......... .......... .......... .......... .......... .......... 215 TTCTACTCCT AAGCAATACA ACTATCATTT GTAAGTGGCG CAAGCATCAA AAGTACAATG 7883 .......... .......... .......... .......... .......... .......... 215 TTTAATAATC TAAAGACTAA AGTAATGAAC TTTAAGATGA ATGTAATGAC TGTACCTTAC 7943 .......... .......... .......... .......... .......... .......... 215 GTTCACTGTC TCTTCAAAGG ACTTCTTAAG CAACTCTAAG TCAATTGTCA GTTCTCGAGC 8003 .......... .......... .......... .......... .......... .......... 215 CTTTTCCTAT GGCTGGTTGT GATCCTGCTT CATGGAGAAT GACAATTTAA AACAAAATTG 8063 .......... .......... .......... .......... .......... .......... 215 ACCTCAGGAT TCAGAACACA TGTTTGAGCA TTGTAATACT AAGTTTTCAA GAGGGTGCTT 8123 .......... .......... .......... .......... .......... .......... 215 CAGTTCAAGT TCCCATTTCA ACACGAGTCA TTTATTCCAT TTTCCAAAAA TGCACTCACA 8183 .......... .......... .......... .......... .......... .......... 215 TTTTGGAACT TTTAAAGCTA TATACTCTAA CGATATTGTT GCCAAACATA TCATAATTGT 8243 .......... .......... .......... .......... .......... .......... 215 TACAAGTATC ACGGATTTCC TGCACTCTAT TGCATGTCAA AATCATATGC ATAAACTGTA 8303 .......... .......... .......... .......... .......... .......... 215 ACAGGCATTA CCTTTCTTGA ATGTGACTAT TTTGGGGAGT ACCCACCTAA TTTTCCTTTT 8363 .......... .......... .......... .......... .......... .......... 215 GGTATAACAC ACAGCCAAAT CACAGAGTTG ACAGCAGTGT GCCACATTTT ACATTATAAA 8423 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....CCAAAT CACAGAGTTG ACAGCAGTGT GCCACATTTT ACATTATAAA 261 ACATGAAAGG GTCTTTCATT TCAATTAGAA AATGGAACAA ACTGATAACC AGCAGCAAAT 8483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGAAAGG GTCTTTCATT TCAATTAGAA AATGGAACAA ACTGATAACC AGCAGCAAAT 321 TGCATAAATT TACATATAAA GACCCGAAAA TAACTAAGCA AACATTAGGA TGAATTTTGC 8543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATAAATT TACATATAAA GACCCGAAAA TAACTAAGCA AACATTAGGA TGAATTTTGC 381 ACATACCTTG ACGACCATCA CAAGCATCAT GGTACTCGCC TTCCTCCTCG TTTTCTTTTG 8603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATACCTTG ACGACCATCA CAAGCATCAT GGTACTCGCC TTCCTCCTCG TTTTCTTTTG 441 AGGCAGATGC CACAGGAACT CCGCCCTTAC GAGCAGCATT TCCACCATCC TTCTCATCAG 8663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCAGATGC CACAGGAACT CCGCCCTTAC GAGCAGCATT TCCACCATCC TTCTCATCAG 501 GATACCTCAC AACCACAACA GGGCAAACAC AATGCCTAAC ACAGTAATCA CTAACACT 8721 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GATACCTCAC AACCACAACA GGGCAAACAC AATGCCTAAC ACAGTAATCA CTAACACT 559 hqPGS_C10SLe0045H11.1+_SGN-E244515+ (1644 1709,1813 1961,8378 8721) ******************************************************************************** EST sequence 40 +strand 441 n (File: SGN-E236650+) 1 ATCACTCGAC GGAGAAGAAG ATAAAGGAAC AACTTGATTC TCATCGTCAT AATCATCGAT 61 TTCACTGAAT TGCAGAGAGA GAAAGTAGGA GAAAGCTTTG GACCAGAGGC ATTCCATGGA 121 GTTGAATTTT GACATGAATG ACAAAGGAGA TTTCTCGAGT GTTTAGCTAC GAGAAAATTA 181 GCAGAATGAA CTTTCGAATC GCAATCCCAG CAAAGCCAAA TCACAGAGTT GACAGCAGTG 241 TGCCACATTT TACATTATAA AACATGAAAG GGTCTTTCAT TTCAATTAGA AAATGGAACA 301 AACTGATAAC CAGCAGCAAA TTGCATAAAT TTACATATAA AGACCCGAAA ATAACTAAGC 361 AAACATTAGG ATGAATTTTG CACATACCTT GACGACCATC ACAAGCATCA TGGTACTCGC 421 CTTCCTCCTC GTTTTCTTTT G Predicted gene structure (within gDNA segment 1044 to 9213): Exon 1 1644 1709 ( 66 n); cDNA 1 66 ( 66 n); score: 1.000 Intron 1 1710 1812 ( 103 n); Pd: 0.866 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 1813 1961 ( 149 n); cDNA 67 215 ( 149 n); score: 1.000 Intron 2 1962 8377 (6416 n); Pd: 0.988 (s: 1.00), Pa: 0.383 (s: 1.00) Exon 3 8378 8603 ( 226 n); cDNA 216 441 ( 226 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E236650+ 1.000 441 1.000 C PGS_C10SLe0045H11.1+_SGN-E236650+ (1644 1709,1813 1961,8378 8603) Alignment (genomic DNA sequence = upper lines): ATCACTCGAC GGAGAAGAAG ATAAAGGAAC AACTTGATTC TCATCGTCAT AATCATCGAT 1703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACTCGAC GGAGAAGAAG ATAAAGGAAC AACTTGATTC TCATCGTCAT AATCATCGAT 60 TTCACTGTCA GTACTCACGT ATTCATCTTC ATCATTATCC GCTTCGGTTT GATAATTTTC 1763 |||||| TTCACT.... .......... .......... .......... .......... .......... 66 TTCGATTGTT TCCCCAATTT GTTCAATTGG ATCTGGGTTT TGGATGCAGG AATTGCAGAG 1823 | |||||||||| .......... .......... .......... .......... .........G AATTGCAGAG 77 AGAGAAAGTA GGAGAAAGCT TTGGACCAGA GGCATTCCAT GGAGTTGAAT TTTGACATGA 1883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAAAGTA GGAGAAAGCT TTGGACCAGA GGCATTCCAT GGAGTTGAAT TTTGACATGA 137 ATGACAAAGG AGATTTCTCG AGTGTTTAGC TACGAGAAAA TTAGCAGAAT GAACTTTCGA 1943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGACAAAGG AGATTTCTCG AGTGTTTAGC TACGAGAAAA TTAGCAGAAT GAACTTTCGA 197 ATCGCAATCC CAGCAAAGGT TAGCTTGATC TGATTCACAA TACATCATTG ATTTGTTCTC 2003 |||||||||| |||||||| ATCGCAATCC CAGCAAAG.. .......... .......... .......... .......... 215 ACCACATAAC TCACAATTCA TCATCTTCAC TTCTCTTTCT ATCAATCAAA AAATTCAAAC 2063 .......... .......... .......... .......... .......... .......... 215 AATTTTAGGG TTTTTTTTGA AAGGAATGTT TAAAATTGGG GGTTTTGGAG TTTTTGAATA 2123 .......... .......... .......... .......... .......... .......... 215 GAGAGAAAAT TGCAACTATT TTTATACTAG TATATATATA TTTGATATTT TTCATGGGTG 2183 .......... .......... .......... .......... .......... .......... 215 GGGGTGGGGT GGGTTATGAA AGTTTTTCTT TTACCAAAAT GGAGTATTTG TTTGGTGTTT 2243 .......... .......... .......... .......... .......... .......... 215 GGTTCGAGAT TGAAAAAAGT TATTGAGTTT ACGTGAAGGA GTTATCGCCA GTATGAAAAT 2303 .......... .......... .......... .......... .......... .......... 215 GATAATGGGA TATAGAAAGG AGATTTTCGT GTTAGGGGTT CGATATTGAG TTTAGTACTT 2363 .......... .......... .......... .......... .......... .......... 215 GTTTACGATA GTTGTTAAAT GAGCGAATCA ACAAGATATA ATATATGATT TCAATGTTCT 2423 .......... .......... .......... .......... .......... .......... 215 GAATTTACTT TTAGTAATTG AAGGGAGATA AGAGATGGAG TAGGTGAAAT TCATTCAGTT 2483 .......... .......... .......... .......... .......... .......... 215 TGAGAGATAA TCAACAAGAT ATAAGATGTG ATTCCGACTT TATGAATCAC TTTCAGTAAT 2543 .......... .......... .......... .......... .......... .......... 215 TAGAGGTGGA TCGGGGATTA AGCAGGTCAT GGTCATTCTA TTTGAGGGAT AATCAACAAG 2603 .......... .......... .......... .......... .......... .......... 215 ATACAAGATG TGATTTTGAT CTTAAGAATC ATTTTCGGTA ATGAAAAACA GATCAAGAGT 2663 .......... .......... .......... .......... .......... .......... 215 TGAGCAAGTT AGTTCGTTCA GTTTGAAGAA TAAATTATAT GATTGATTTG TCAATTTTAG 2723 .......... .......... .......... .......... .......... .......... 215 CATTTCCATT TCAATCATTG CTCGCTCGTG ACTTGATTTC AGATCGTGAA TATGCTATTA 2783 .......... .......... .......... .......... .......... .......... 215 GCTAGCAATT TTGTGTTGAT TATTGAAATT AATGAGGGTA TGAATTAAAA AATTTGAACT 2843 .......... .......... .......... .......... .......... .......... 215 ACAAAGAAGT AAAGATTTAT TTAGTTAATA AAATATGATG TAACAATCTT GAGATAAAAT 2903 .......... .......... .......... .......... .......... .......... 215 GTAAAATTAT TGAACTATAC TTGATAAAAA ATACTAATCA GTTTTGTGAT TAATTATTTC 2963 .......... .......... .......... .......... .......... .......... 215 GTAAAAAGGT TAAATAGTTA ATCTCATAGA ATATGTCAAA CTTATCTCAA CCACAAAATA 3023 .......... .......... .......... .......... .......... .......... 215 GCTTCTTCTA TTCAATTCAA AATAACCAAA CAATTCATAA GAACTTTAAA ATAAAGTAGA 3083 .......... .......... .......... .......... .......... .......... 215 CATAAGAATC AAAACATACA CTATAAATTT AATTAGCAAA AGAAGAGTAT TATATTTACC 3143 .......... .......... .......... .......... .......... .......... 215 TAATAACTCG TGTCTTATAA AGCTCATTCA AAATAAATCG TATTAGAATT TTTTTATTTT 3203 .......... .......... .......... .......... .......... .......... 215 ACTTCCATTG AAGGTCGTAA GATTATAGTA GGTATTTTTT TTATAATCAC GCTATTCAAT 3263 .......... .......... .......... .......... .......... .......... 215 CAAGATTACA TATACCTCGA TTAATTTTAC GAAGTATCTA TCAGGTATCA CGTCTTATCA 3323 .......... .......... .......... .......... .......... .......... 215 GCGACATGTA CTAAATAACT CTATCCACCA AAATTAAAAA TAAAATAAAA AGAAATCATC 3383 .......... .......... .......... .......... .......... .......... 215 TAGCGTATTT TATCTCTATT GAAAAGATTA TATAAGATAC ATTTACTATT TATAAATCAG 3443 .......... .......... .......... .......... .......... .......... 215 AAACAAATAT ACAATTTGAA TTATAAATTC AATCAAAATC TAATAAATTC AGCCTAAACC 3503 .......... .......... .......... .......... .......... .......... 215 TTATCTTAAT ATAATTATAT AACTCAAAAT GGCTAAAAAT TCAAAATCAT CTTTATTGTG 3563 .......... .......... .......... .......... .......... .......... 215 AGAGAGGCTA TGTATGTTAT TTTTATTATT TTATTTTATC TTTATGTAAA TTGAAACTAA 3623 .......... .......... .......... .......... .......... .......... 215 AAGAAGATAA TTGGTAGCTT TCATTACTCT AAAATTGAAA GGATATATTT TTTTTAAAAT 3683 .......... .......... .......... .......... .......... .......... 215 GCAAGGGGCT ATGTATAGCC TAAGTTATTA TTATATATAA TATAATATAA TATAATATAA 3743 .......... .......... .......... .......... .......... .......... 215 TATAATATAA TATAATATAA ACATATAATA ACCAATGAAT TTAAGTTCTA GTCACATTTG 3803 .......... .......... .......... .......... .......... .......... 215 CTTACATGGC CATTTTTAGT CCACATAAAA GATTGAACCA TGTGAAGTCC ACCTTCTACC 3863 .......... .......... .......... .......... .......... .......... 215 CATAATCCAA AAAATATATA TTCATATCTA TCTTTGGAGT ATGGGCCTTT TATATTATTA 3923 .......... .......... .......... .......... .......... .......... 215 TTATTATTAT CTTGATTCTT GAATTATTAG CCAAATAAAA AAACTTTTAT TTTTTATTTT 3983 .......... .......... .......... .......... .......... .......... 215 TTTGGTTACA ATTGAAAGAA AAAAAAAACA ATTGTTTTGG ATAAGGGGAC AAAAGGGAAA 4043 .......... .......... .......... .......... .......... .......... 215 AAGAATTGAC TTGGATAAGG GTGTCAAAAT AATCTAACCC TAATCTACAT GCTCTATCTT 4103 .......... .......... .......... .......... .......... .......... 215 ATCTTGGATT AATTAAAAAA AAAAGATAGA GAGAATGAAA CGACACCGTT TTTATTATTA 4163 .......... .......... .......... .......... .......... .......... 215 TCTCGTGAAG ATAAAAAAAT TAGTTTTAAT TATCGATAGA AAGAATAGAA TGACACCATT 4223 .......... .......... .......... .......... .......... .......... 215 CTTATTATTA TCTCGTGAAG ATAAAGAAAT TATTTCTAAT TATTGTATGA TGTACAATAA 4283 .......... .......... .......... .......... .......... .......... 215 TTTTATTTAT AAAAGAAGAA ATTATAAAGT AATATATAGT CACAAGATAA GATTTTTTAA 4343 .......... .......... .......... .......... .......... .......... 215 AATTTATGAT TTTAATTTGT ATGGGATGAG GAATAATAAA AAAATACTTG GTGGACAATT 4403 .......... .......... .......... .......... .......... .......... 215 TTTTTTGTTT ATTTTAATTG ATGACATGGA ATTTTAGACC ACGTGAACAT GTCTGATGTG 4463 .......... .......... .......... .......... .......... .......... 215 GCATCAAATG AGTATAATTC TCCTTCCTCG AGATTCTAGC CTTGCTGACA TGGACAAAGC 4523 .......... .......... .......... .......... .......... .......... 215 TTAACTTTGT CGACTTCAAT TTTACGTACG TGATACTTTT CGGATATCAA AATTTGAATA 4583 .......... .......... .......... .......... .......... .......... 215 AATCTATCTT TAATAGTAAA TATTTTATAA ATTTTTTGAA CATTTTGAAT TATCAATCAT 4643 .......... .......... .......... .......... .......... .......... 215 TCTGAATTAT AGTACTTTTT ACGTAATTTA AAAATATATA ATTTATATTT CAAAATTAAT 4703 .......... .......... .......... .......... .......... .......... 215 TTTTAATCAA ATTTAAACTG TTTAATTTTT AAAAAATGAA AAGTATCACG TAAATTGAAA 4763 .......... .......... .......... .......... .......... .......... 215 TAAAATAAAG TATTTTTTAA AAAGGAGTGA TGAGTAAATA TAATTAATTT TGATAAGGTA 4823 .......... .......... .......... .......... .......... .......... 215 GAGTTAATTA TAGTTCCAAA GTATGATTGG ATGAATATAT TTATTGAGAA TTATTTGAAA 4883 .......... .......... .......... .......... .......... .......... 215 ATAACTTATT TTTGATAATA GAGAGATAAA TATTATCACT TTTCGTATAT TATTTTATTC 4943 .......... .......... .......... .......... .......... .......... 215 TTTGATTTGT GGATAAGAGG TGCTTTGCAT CAAGACCAAT GAGACTATCT CCATTATTTA 5003 .......... .......... .......... .......... .......... .......... 215 CGATAATTGA AGAGTATATA TTTTTTCTTA TTTATTTTAC ATAAGGTACA TTATTTATAT 5063 .......... .......... .......... .......... .......... .......... 215 TTGTATAAGT AATGTGAAAT AATATATAAG ACTGTATAAA TTTTATTTTA TCATTTCAAT 5123 .......... .......... .......... .......... .......... .......... 215 TTATATGATC GTATTTAACT GAATACAAAA TTTTAAGAAA AGTAAAAAGC ACATTTGATT 5183 .......... .......... .......... .......... .......... .......... 215 TTGTTTTTTA AATTTGCAAT GACTTTTCTA TTTTGTCCCT TAGGAACCCA TCATATACAT 5243 .......... .......... .......... .......... .......... .......... 215 GAACTATGCT CATTCAATTG AATTTATTGT GAGCCTTATA TTCTGCATAA AACAAAATTG 5303 .......... .......... .......... .......... .......... .......... 215 GGAATAAAAT AGCACTTAGA CTTCTACCAC GTGTTGCTCA ATTAGAAAAC ATCAAATGAA 5363 .......... .......... .......... .......... .......... .......... 215 CGGATCGAAC TGAATTTAAA CGATCAAGTG GGATCGAAAG AAAATAATAT GTATATAAAT 5423 .......... .......... .......... .......... .......... .......... 215 TTTATTTCTA TCTAGTTTGC TTTTCTAACC TAATTTTTGA TTGGTTAGAA TGAATTGGAA 5483 .......... .......... .......... .......... .......... .......... 215 ATAATGATCT AAGTTAATAA ATAAATAAAT CAATCGCTAG CTCAAATTCT GAGCTAATTT 5543 .......... .......... .......... .......... .......... .......... 215 TTGTAACCCC TAACCTCAAA TTATAATTCA ATTTATCATA TATTTGAACT TTTAATTTCT 5603 .......... .......... .......... .......... .......... .......... 215 TATTGGATTA TGTTCAACTT TTATGTATAA AGTGGATAAC TTATTAATAA CTACTTTAAG 5663 .......... .......... .......... .......... .......... .......... 215 GGAGCTTGTC CAAACAATGA CATCTTTTTA AAGGCTCTCT CTTGTTCTAA TTTATTTTGC 5723 .......... .......... .......... .......... .......... .......... 215 CTTAAATTTT GTGAATAATC AAAATAATAT GATTAGTCGA GCGAAAAGTC TATCAGAAAC 5783 .......... .......... .......... .......... .......... .......... 215 AATCGTTTTA CCTTTACAAA GCACGAGTGA AGCTGCACAC ACACCACCTT CACTAAACTC 5843 .......... .......... .......... .......... .......... .......... 215 TATTTGTGAA ATTAGATAGC CTAAATCAAA CAATGTGTTT GATATTTTCT TTTGACCAAT 5903 .......... .......... .......... .......... .......... .......... 215 TCTCGATTTG TGCGGATTAT CCTTGCGCAG GGGCCATGCT AATCTTCTCT GTATCGTTCC 5963 .......... .......... .......... .......... .......... .......... 215 AATTTTATCG GATGTCATAT AAATCAAAAT CGACCCCCAC CCCACCCAAC CAAACCCCAT 6023 .......... .......... .......... .......... .......... .......... 215 GCTTTGTCTT ATTTTGATGG GGGGTTGTAT GAGGGAAAGG AGTAATAGGA CCACTGTTTT 6083 .......... .......... .......... .......... .......... .......... 215 CCAAGTGTAA GACTTCAATG TTTCAACAGA CCAAACTTTG TGGTTATTAT TAACTAGGGA 6143 .......... .......... .......... .......... .......... .......... 215 AAGTACATCC CCTCTGCCCA TGCACTTTCT CTTAAATGAT GATATCCCTT TCTTATCTCA 6203 .......... .......... .......... .......... .......... .......... 215 ATTCTTTACT TGGAAGTACA TTCTAGAGAA ACTAGTGACA GCCTGTTTGA TTATTTCCAA 6263 .......... .......... .......... .......... .......... .......... 215 CTTTAGGTCT ACACAGATAG ACGCTTAAAT TCATATAAAG CTTAATAAAG AACTTGCGGA 6323 .......... .......... .......... .......... .......... .......... 215 AGGCAAAGTA TGCATTGCCT TCAGAACAGC GAAAACAGAA ACAAGAACCA ACTGTTCTGG 6383 .......... .......... .......... .......... .......... .......... 215 GCAACAGCAG CATAGAGATT ACATCTTAAA AGTAAGATTT TATATTTGCA CCATAAAGAT 6443 .......... .......... .......... .......... .......... .......... 215 AAGAAGTGAT AAAAAGGGGC AGGTTTAAGT GAAACTCTAT GAAGACAACA ATCTTTAGAG 6503 .......... .......... .......... .......... .......... .......... 215 ATACAACATC ATCTAGCGAA CTACTGTAAA CTAAACTGAA AGACAGGAAA CCACAATTCA 6563 .......... .......... .......... .......... .......... .......... 215 GTTAAAGAAG ATGAGACTCC GGATATAACA AAATACCAAG TGGTTTTCAC ATAAGTCGGC 6623 .......... .......... .......... .......... .......... .......... 215 TAAAAGGATT GCTTAACCCA ACTTCCGCAC CTGGAATCTG TCACCAAAGA AGCGGGAGTA 6683 .......... .......... .......... .......... .......... .......... 215 TCAAAGTCCC AGTTAACAAA GAGAACCATC AAATAACCAT AGAGTCGATA GGGAAGGGAG 6743 .......... .......... .......... .......... .......... .......... 215 TAGAGGATTG ATTTAAAAAC AAGGTTCAAA TGTATAATGC ATGACACAGC TAGAATATTA 6803 .......... .......... .......... .......... .......... .......... 215 ATTGCATAAC TCATAAGATA TCAAGACATA GCTACTTGGT TGCACTGGTT TGCAACTCTC 6863 .......... .......... .......... .......... .......... .......... 215 TCATGCGATC TGCACAGACA AAACCAAATT GTCTTGAAAG ACCTACTATC TCTTGGATAA 6923 .......... .......... .......... .......... .......... .......... 215 AGGAAAGGCC TTTTTGACAT CTCAACCATC CAATTTGATT TTATGTATAA CAATCTTTGT 6983 .......... .......... .......... .......... .......... .......... 215 TTATTATTCC ATTCATCCAA AATAGATTTT GTGTAACATA TTCATATATC ATTTGACTCT 7043 .......... .......... .......... .......... .......... .......... 215 CCAGGAACGT CGAACCTAGA TATTTTGAAT TGTTTGTTTT CCTCCAAAAT CTTTCACAAT 7103 .......... .......... .......... .......... .......... .......... 215 GTGCCCTGAA AAAAATCTCA GTGAAGAGAA ATGATTCATG GCTCATTTAT CTAATCTTTG 7163 .......... .......... .......... .......... .......... .......... 215 GTGACATCAC AAAGTTGATT TGACTTCACA GTTCACCCAC AAATCTAAAA AACCAATTTA 7223 .......... .......... .......... .......... .......... .......... 215 TAGTGGCTAA ACTGCATTTC ATAAACATCG AACCACCAAT TCAAAAGGCA AATCAAGCTT 7283 .......... .......... .......... .......... .......... .......... 215 AGGAGAACAC TAGAAAAATT CCATAAGACC TAAAGTTCAA AAATTGGGAA CTCAAAATGA 7343 .......... .......... .......... .......... .......... .......... 215 ATTGGTTCAA GGTTGAGCTA CGGTTTCCTT AGTCAAAATT GTTATTTCAA CATCATACAA 7403 .......... .......... .......... .......... .......... .......... 215 TGTTTTATTT TCTCCCAAAG TGAAACTTTC ACAACAAAGA TAGCTATCAA CAAATTACAT 7463 .......... .......... .......... .......... .......... .......... 215 CTTCCTCAAA TCTGTCATGG AAACCATGGT TGATAGTCTC ATCCATTGAC CAAGGAAGCA 7523 .......... .......... .......... .......... .......... .......... 215 TTTAGCTTAT TACAGGTTAC AAGGGTGGAG CACACAACCT AGTCCTAAGA AAGCTACTCC 7583 .......... .......... .......... .......... .......... .......... 215 ATTAACTGTT AAAACCAGAA GCAGCCACTA GGGTGCCAAA TTAAATTATT TATAGGAAGA 7643 .......... .......... .......... .......... .......... .......... 215 AAGTTTTTTT TGGTAATAAG GGAGAAACAA TAATAAAAAA ACAAATGGGA AAATATGTGT 7703 .......... .......... .......... .......... .......... .......... 215 AACTTTCATC TAATTGTAGT CCTCTTACAA ACTTATGTTT AAGAGTAAAA AGTAACTGAA 7763 .......... .......... .......... .......... .......... .......... 215 CAAGAACCTT ACTGTCTCAT ACAAAAAGAG ATAGGCCCCA AAAATGAATC ATGCCCTAAA 7823 .......... .......... .......... .......... .......... .......... 215 TTCTACTCCT AAGCAATACA ACTATCATTT GTAAGTGGCG CAAGCATCAA AAGTACAATG 7883 .......... .......... .......... .......... .......... .......... 215 TTTAATAATC TAAAGACTAA AGTAATGAAC TTTAAGATGA ATGTAATGAC TGTACCTTAC 7943 .......... .......... .......... .......... .......... .......... 215 GTTCACTGTC TCTTCAAAGG ACTTCTTAAG CAACTCTAAG TCAATTGTCA GTTCTCGAGC 8003 .......... .......... .......... .......... .......... .......... 215 CTTTTCCTAT GGCTGGTTGT GATCCTGCTT CATGGAGAAT GACAATTTAA AACAAAATTG 8063 .......... .......... .......... .......... .......... .......... 215 ACCTCAGGAT TCAGAACACA TGTTTGAGCA TTGTAATACT AAGTTTTCAA GAGGGTGCTT 8123 .......... .......... .......... .......... .......... .......... 215 CAGTTCAAGT TCCCATTTCA ACACGAGTCA TTTATTCCAT TTTCCAAAAA TGCACTCACA 8183 .......... .......... .......... .......... .......... .......... 215 TTTTGGAACT TTTAAAGCTA TATACTCTAA CGATATTGTT GCCAAACATA TCATAATTGT 8243 .......... .......... .......... .......... .......... .......... 215 TACAAGTATC ACGGATTTCC TGCACTCTAT TGCATGTCAA AATCATATGC ATAAACTGTA 8303 .......... .......... .......... .......... .......... .......... 215 ACAGGCATTA CCTTTCTTGA ATGTGACTAT TTTGGGGAGT ACCCACCTAA TTTTCCTTTT 8363 .......... .......... .......... .......... .......... .......... 215 GGTATAACAC ACAGCCAAAT CACAGAGTTG ACAGCAGTGT GCCACATTTT ACATTATAAA 8423 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....CCAAAT CACAGAGTTG ACAGCAGTGT GCCACATTTT ACATTATAAA 261 ACATGAAAGG GTCTTTCATT TCAATTAGAA AATGGAACAA ACTGATAACC AGCAGCAAAT 8483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGAAAGG GTCTTTCATT TCAATTAGAA AATGGAACAA ACTGATAACC AGCAGCAAAT 321 TGCATAAATT TACATATAAA GACCCGAAAA TAACTAAGCA AACATTAGGA TGAATTTTGC 8543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATAAATT TACATATAAA GACCCGAAAA TAACTAAGCA AACATTAGGA TGAATTTTGC 381 ACATACCTTG ACGACCATCA CAAGCATCAT GGTACTCGCC TTCCTCCTCG TTTTCTTTTG 8603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATACCTTG ACGACCATCA CAAGCATCAT GGTACTCGCC TTCCTCCTCG TTTTCTTTTG 441 hqPGS_C10SLe0045H11.1+_SGN-E236650+ (1644 1709,1813 1961,8378 8603) ******************************************************************************** EST sequence 10 +strand 863 n (File: SGN-E538363+) 1 TTTTTTTTTT TCCAGAAAAG AATGGATCTT GGTTCACTAA TTCTTCCAAG TAAAATTACA 61 AAGAGAATCA AGAAGAAAAA AAATAAGAAG CATGAAAAGG AAAATGTATA ATTCTATTTG 121 TGTATTTCTC TTTGTAGTCA AATGATCGAT CGTAGAGAAA CAAGATTTTG CATAATAACG 181 ACGATATAAT TTCAGACCTC AATTATGAAA TTACACTGAG TATGTTAGTA ATCATTGGTT 241 CGAAGCACCT TCATTGGTCT CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC 301 AACAACAAAC TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG 361 AAAAATCACA ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA 421 ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG 481 AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG 541 AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA 601 AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT 661 GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC 721 GATGTATAGA CGGAACTACA AAATCTTACT TACGCATTCG ACNAAACTCA ATAACTCGTA 781 AACTTCGTAT TTATATTTTA AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA 841 ATTCTAGCTT TGTTCCGCTC TTT Predicted gene structure (within gDNA segment 1 to 2085): Exon 1 613 1475 ( 863 n); cDNA 2 863 ( 862 n); score: 0.990 MATCH C10SLe0045H11.1+ SGN-E538363+ 0.990 863 1.000 C PGS_C10SLe0045H11.1+_SGN-E538363+ (613 1475) Alignment (genomic DNA sequence = upper lines): TTGGAAGTTC CAAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 672 || || | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT CCAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 61 AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 121 GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 181 CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 241 GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 301 ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 361 AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 1032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 421 TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 1092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 481 AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 1152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 541 GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 1212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 601 AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 1272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 661 TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 1332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 721 ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 1392 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CNAAACTCAA TAACTCGTAA 781 ACTTCGTATT TATATTTTAA AATCAACTAT CCCGTAAAAA CTATAATTTA TAAACTTAAA 1452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ACTTCGTATT TATATTTTAA AATCAACTAT CCCGTAAAAA CTATAATTTA TAAACTT-AA 840 ATTCTAGCTT TGTTCCGCTC TTT 1475 |||||||||| |||||||||| ||| ATTCTAGCTT TGTTCCGCTC TTT 863 hqPGS_C10SLe0045H11.1+_SGN-E538363+ (613 1475) ******************************************************************************** EST sequence 15 +strand 850 n (File: SGN-E538398+) 1 TTTTTTTTTT TCCAGAAAAG AATGGATCTT GGTTCACTAA TTCTTCCAAG TAAAATTACA 61 AAGAGAATCA AGAAGAAAAA AAATAAGAAG CATGAAAAGG AAAATGTATA ATTCTATTTG 121 TGTATTTCTC TTTGTAGTCA AATGATCGAT CGTAGAGAAA CAAGATTTTG CATAATAACG 181 ACGATATAAT TTCAGACCTC AATTATGAAA TTACACTGAG TATGTTAGTA ATCATTGGTT 241 CGAAGCACCT TCATTGGTCT CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC 301 AACAACAAAC TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG 361 AAAAATCACA ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA 421 ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG 481 AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG 541 AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA 601 AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT 661 GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC 721 GATGTATAGA CGGAACTACA AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA 781 AACTTCGTAT TTATATTTTA AAAATCACTA TCCCGTAAAA CTATAATTTA TAACTTAGAA 841 TTCTAGCTTT Predicted gene structure (within gDNA segment 1 to 2225): Exon 1 613 1463 ( 851 n); cDNA 2 850 ( 849 n); score: 0.985 MATCH C10SLe0045H11.1+ SGN-E538398+ 0.985 851 1.001 C PGS_C10SLe0045H11.1+_SGN-E538398+ (613 1463) Alignment (genomic DNA sequence = upper lines): TTGGAAGTTC CAAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 672 || || | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT CCAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 61 AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 121 GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 181 CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 241 GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 301 ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 361 AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 1032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 421 TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 1092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 481 AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 1152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 541 GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 1212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 601 AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 1272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 661 TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 1332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 721 ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 1392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 781 ACTTCGTATT TATATTTTAA AATCAACTAT CCCGTAAAAA CTATAATTTA TAAACTTAAA 1452 |||||||||| |||||||||| || ||||| ||||| |||| |||||||||| | |||||| | ACTTCGTATT TATATTTTAA AAATCACTAT CCCGT-AAAA CTATAATTTA T-AACTTAGA 839 ATTCTAGCTT T 1463 |||||||||| | ATTCTAGCTT T 850 hqPGS_C10SLe0045H11.1+_SGN-E538398+ (613 1463) ******************************************************************************** EST sequence 21 +strand 851 n (File: SGN-E538544+) 1 TTTTTTTTTT TCAAGAAAAG AATGGATCTT GGTTCACTAA TTCTTCCAAG TAAAATTACA 61 AAGAGAATCA AGAAGAAAAA AAATAAGAAG CATGAAAAGG AAAATGTATA ATTCTATTTG 121 TGTATTTCTC TTTGTAGTCA AATGATCGAT CGTAGAGAAA CAAGATTTTG CATAATAACG 181 ACGATATAAT TTCAGACCTC AATTATGAAA TTACACTGAG TATGTTAGTA ATCATTGGTT 241 CGAAGCACCT TCATTGGTCT CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC 301 AACAACAAAC TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG 361 AAAAATCACA ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA 421 ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG 481 AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG 541 AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA 601 AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT 661 GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC 721 GATGTATAGA CGGAACTACA AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA 781 AACTTCGTAT TTATATTTTA AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA 841 AATTCTAGCT T Predicted gene structure (within gDNA segment 1 to 2072): Exon 1 613 1462 ( 850 n); cDNA 2 851 ( 850 n); score: 0.993 MATCH C10SLe0045H11.1+ SGN-E538544+ 0.993 850 0.999 C PGS_C10SLe0045H11.1+_SGN-E538544+ (613 1462) Alignment (genomic DNA sequence = upper lines): TTGGAAGTTC CAAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 672 || || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT CAAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 61 AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 121 GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 181 CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 241 GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 301 ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 361 AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 1032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 421 TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 1092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 481 AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 1152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 541 GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 1212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 601 AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 1272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 661 TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 1332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 721 ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 1392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 781 ACTTCGTATT TATATTTTAA AATCAACTAT CCCGTAAAAA CTATAATTTA TAAACTTAAA 1452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCGTATT TATATTTTAA AATCAACTAT CCCGTAAAAA CTATAATTTA TAAACTTAAA 841 ATTCTAGCTT 1462 |||||||||| ATTCTAGCTT 851 hqPGS_C10SLe0045H11.1+_SGN-E538544+ (613 1462) ******************************************************************************** EST sequence 25 +strand 833 n (File: SGN-E538729+) 1 TTTCTTTTTT TCCAGAAAAG AATGGATCTT GGTTCACTAA TTCTTCCAAG TAAAATTACA 61 AAGAGAATCA AGAAGAAAAA AAATAAGAAG CATGAAAAGG AAAATGTATA ATTCTATTTG 121 TGTATTTCTC TTTGTAGTCA AATGATCGAT CGTAGAGAAA CAAGATTTTG CATAATAACG 181 ACGATATAAT TTCAGACCTC AATTATGAAA TTACACTGAG TATGTTAGTA ATCATTGGTT 241 CGAAGCACCT TCATTGGTCT CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC 301 AACAACAAAC TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG 361 AAAAATCACA ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA 421 ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG 481 AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG 541 AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA 601 AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT 661 GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC 721 GATGTATAGA CGGAACTACA AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA 781 AACTTCGTAT TTATATTTTA AAATCACTAT GCCGTAAAAA CTATATTTAT AAA Predicted gene structure (within gDNA segment 1 to 2297): Exon 1 613 1446 ( 834 n); cDNA 2 833 ( 832 n); score: 0.988 MATCH C10SLe0045H11.1+ SGN-E538729+ 0.988 834 1.001 C PGS_C10SLe0045H11.1+_SGN-E538729+ (613 1446) Alignment (genomic DNA sequence = upper lines): TTGGAAGTTC CAAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 672 || || | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTTTT CCAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 61 AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 121 GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 181 CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 241 GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 301 ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 361 AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 1032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 421 TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 1092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 481 AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 1152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 541 GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 1212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 601 AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 1272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 661 TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 1332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 721 ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 1392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 781 ACTTCGTATT TATATTTTAA AATCAACTAT CCCGTAAAAA CTATAATTTA TAAA 1446 |||||||||| |||||||||| |||| ||||| ||||||||| |||| ||||| |||| ACTTCGTATT TATATTTTAA AATC-ACTAT GCCGTAAAAA CTAT-ATTTA TAAA 833 hqPGS_C10SLe0045H11.1+_SGN-E538729+ (613 1446) ******************************************************************************** EST sequence 11 +strand 820 n (File: SGN-E538366+) 1 TTTTTTTTTT TCCAGAAAAG AATGGATCTT GGTTCACTAA TTCTTCCAAG TAAAATTACA 61 AAGAGAATCA AGAAGAAAAA AAATAAGAAG CATGAAAAGG AAAATGTATA ATTCTATTTG 121 TGTATTTCTC TTTGTAGTCA AATGATCGAT CGTAGAGAAA CAAGATTTTG CATAATAACG 181 ACGATATAAT TTCAGACCTC AATTATGAAA TTACACTGAG TATGTTAGTA ATCATTGGTT 241 CGAAGCACCT TCATTGGTCT CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC 301 AACAACAAAC TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG 361 AAAAATCACA ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA 421 ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG 481 AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG 541 AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA 601 AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT 661 GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC 721 GATGTATAGA CGGAACTACA AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA 781 AACTTCGTAT TTATATTTTA AAATCACTAT CCCGTAAAAA Predicted gene structure (within gDNA segment 1 to 2167): Exon 1 613 1432 ( 820 n); cDNA 2 820 ( 819 n); score: 0.990 MATCH C10SLe0045H11.1+ SGN-E538366+ 0.990 820 1.000 C PGS_C10SLe0045H11.1+_SGN-E538366+ (613 1432) Alignment (genomic DNA sequence = upper lines): TTGGAAGTTC CAAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 672 || || | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT CCAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 61 AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 121 GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 181 CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 241 GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 301 ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 361 AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 1032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 421 TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 1092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 481 AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 1152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 541 GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 1212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 601 AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 1272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 661 TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 1332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 721 ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 1392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 781 ACTTCGTATT TATATTTTAA AATCAACTAT CCCGTAAAAA 1432 |||||||||| |||||||||| |||| ||||| |||||||||| ACTTCGTATT TATATTTTAA AATC-ACTAT CCCGTAAAAA 820 hqPGS_C10SLe0045H11.1+_SGN-E538366+ (613 1432) ******************************************************************************** EST sequence 23 +strand 815 n (File: SGN-E538611+) 1 TTTTTTTTTT TCCAGAAAAG AATGGATCTT GGTTCACTAA TTCTTCCAAG TAAAATTACA 61 AAGAGAATCA AGAAGAAAAA AAATAAGAAG CATGAAAAGG AAAATGTATA ATTCTATTTG 121 TGTATTTCTC TTTGTAGTCA AATGATCGAT CGTAGAGAAA CAAGATTTTG CATAATAACG 181 ACGATATAAT TTCAGACCTC AATTATGAAA TTACACTGAG TATGTTAGTA ATCATTGGTT 241 CGAAGCACCT TCATTGGTCT CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC 301 AACAACAAAC TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG 361 AAAAATCACA ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA 421 ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG 481 AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG 541 AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA 601 AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT 661 GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC 721 GATGTATAGA CGGAACTACA AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA 781 AACTTCGTAT TTATATTTTA AAATCAACTA TCCCG Predicted gene structure (within gDNA segment 1 to 2036): Exon 1 613 1426 ( 814 n); cDNA 2 815 ( 814 n); score: 0.991 MATCH C10SLe0045H11.1+ SGN-E538611+ 0.991 814 0.999 C PGS_C10SLe0045H11.1+_SGN-E538611+ (613 1426) Alignment (genomic DNA sequence = upper lines): TTGGAAGTTC CAAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 672 || || | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT CCAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 61 AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 121 GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 181 CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 241 GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 301 ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 361 AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 1032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 421 TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 1092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 481 AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 1152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 541 GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 1212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 601 AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 1272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 661 TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 1332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 721 ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 1392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 781 ACTTCGTATT TATATTTTAA AATCAACTAT CCCG 1426 |||||||||| |||||||||| |||||||||| |||| ACTTCGTATT TATATTTTAA AATCAACTAT CCCG 815 hqPGS_C10SLe0045H11.1+_SGN-E538611+ (613 1426) ******************************************************************************** EST sequence 20 +strand 795 n (File: SGN-E538539+) 1 TTTTTTTTTT TCCAGAAAAG AATGGATCTT GGTTCACTAA TTCTTCCAAG TAAAATTACA 61 AAGAGAATCA AGAAGAAAAA AAATAAGAAG CATGAAAAGG AAAATGTATA ATTCTATTTG 121 TGTATTTCTC TTTGTAGTCA AATGATCGAT CGTAGAGAAA CAAGATTTTG CATAATAACG 181 ACGATATAAT TTCAGACCTC AATTATGAAA TTACACTGAG TATGTTAGTA ATCATTGGTT 241 CGAAGCACCT TCATTGGTCT CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC 301 AACAACAAAC TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG 361 AAAAATCACA ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA 421 ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG 481 AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG 541 AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA 601 AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT 661 GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAA TGTTATCGTC 721 GATGTATAGA CGGAACTACA AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA 781 AACTTCGTAT TTATA Predicted gene structure (within gDNA segment 1 to 2016): Exon 1 613 1406 ( 794 n); cDNA 2 795 ( 794 n); score: 0.990 MATCH C10SLe0045H11.1+ SGN-E538539+ 0.990 794 0.999 C PGS_C10SLe0045H11.1+_SGN-E538539+ (613 1406) Alignment (genomic DNA sequence = upper lines): TTGGAAGTTC CAAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 672 || || | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT CCAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 61 AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 121 GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 181 CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 241 GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 301 ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 361 AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 1032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 421 TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 1092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 481 AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 1152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 541 GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 1212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 601 AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 1272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 661 TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 1332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATAAT GTTATCGTCG 721 ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 1392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA 781 ACTTCGTATT TATA 1406 |||||||||| |||| ACTTCGTATT TATA 795 hqPGS_C10SLe0045H11.1+_SGN-E538539+ (613 1406) ******************************************************************************** EST sequence 22 +strand 753 n (File: SGN-E538551+) 1 TTTCTTATTT TGAAGAAAAG AATGGATCTT GGTTCACTAA TTCTTCCAAG TAAAATTACA 61 AAGAGAATCA AGAAGAAAAA AAATAAGAAG CATGAAAAGG AAAATGTATA ATTCTATTTG 121 TGTATTTCTC TTTGTAGTCA AATGATCGAT CGTAGAGAAA CAAGATTTTG CATAATAACG 181 ACGATATAAT TTCAGACCTC AATTATGAAA TTACACTGAG TATGTTAGTA ATCATTGGTT 241 CGAAGCACCT TCATTGGTCT CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC 301 AACAACAAAC TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG 361 AAAAATCACA ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA 421 ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG 481 AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG 541 AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA 601 AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA AAACAACCTC TCTAATAATA 661 TGTACATTTT ACTATTTCTC AACATCACTC GGGAGACTAA ACTTTCTATA TTGTTATCGT 721 CGATGTATAG ACGGAACTAC AAAATCTTAC TTA Predicted gene structure (within gDNA segment 1 to 1973): Exon 1 613 1363 ( 751 n); cDNA 2 753 ( 752 n); score: 0.982 MATCH C10SLe0045H11.1+ SGN-E538551+ 0.982 751 0.997 C PGS_C10SLe0045H11.1+_SGN-E538551+ (613 1363) Alignment (genomic DNA sequence = upper lines): TTGGAAGTTC CAAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 672 || | || ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTATTTT GAAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 61 AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 121 GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 181 CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 241 GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 301 ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 361 AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 1032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 421 TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 1092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 481 AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 1152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 541 GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 1212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 601 AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCG-AA AACAACCTCT CTAATAATAT 1271 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA AACAACCTCT CTAATAATAT 661 GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC 1331 |||||||||| ||||| | |||||||||| ||||||||| |||||||||| |||||||||| GTACATTTTA CTATTTCTCA ACATCACTCG GGAGACTAAA CTTTCTATAT TGTTATCGTC 721 GATGTATAGA CGGAACTACA AAATCTTACT TA 1363 |||||||||| |||||||||| |||||||||| || GATGTATAGA CGGAACTACA AAATCTTACT TA 753 hqPGS_C10SLe0045H11.1+_SGN-E538551+ (613 1363) ******************************************************************************** EST sequence 8 +strand 739 n (File: SGN-E548037+) 1 TTTTTTTTTT TCCAGAAAAG AATGGATCTT GGTTCACTAA TTCTTCCAAG TAAAATTACA 61 AAGAGAATCA AGAAGAAAAA AAATAAGAAG CATGAAAAGG AAAATGTATA ATTCTATTTG 121 TGTATTTCTC TTTGTAGTCA AATGATCGAT CGTAGAGAAA CAAGATTTTG CATAATAACG 181 ACGATATAAT TTCAGACCTC AATTATGAAA TTACACTGAG TATGTTAGTA ATCATTGGTT 241 CGAAGCACCT TCATTGGTCT CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC 301 AACAACAAAC TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG 361 AAAAATCACA ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA 421 ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG 481 AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG 541 AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA 601 AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA GACAACCTCT CTAATAATAT 661 GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGGTATCGTC 721 GATGTATAGA CGGAACTAC Predicted gene structure (within gDNA segment 1 to 1960): Exon 1 613 1350 ( 738 n); cDNA 2 739 ( 738 n); score: 0.988 MATCH C10SLe0045H11.1+ SGN-E548037+ 0.988 738 0.999 C PGS_C10SLe0045H11.1+_SGN-E548037+ (613 1350) Alignment (genomic DNA sequence = upper lines): TTGGAAGTTC CAAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 672 || || | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT CCAGAAAAGA ATGGATCTTG GTTCACTAAT TCTTCCAAGT AAAATTACAA 61 AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAATCAA GAAGAAAAAA AATAAGAAGC ATGAAAAGGA AAATGTATAA TTCTATTTGT 121 GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCTCT TTGTAGTCAA ATGATCGATC GTAGAGAAAC AAGATTTTGC ATAATAACGA 181 CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATAATT TCAGACCTCA ATTATGAAAT TACACTGAGT ATGTTAGTAA TCATTGGTTC 241 GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCACCTT CATTGGTCTC AAGAACCCTA TGGATGAAGA TGTTCTCTTG TTCTCTTCCA 301 ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAAACT CGACGAACAT GCCTCTTCAT CCGGTAATCG TATTTAATCG TAACGTTAGA 361 AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 1032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCACAA TAATGAGACG GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA 421 TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 1092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCTCGGA CTAGAGGTGA CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA 481 AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 1152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAAACAT CGATATTTGA TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA 541 GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 1212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA 601 AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG 1272 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAG ACAACCTCTC TAATAATATG 661 TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG 1332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT GGTATCGTCG 721 ATGTATAGAC GGAACTAC 1350 |||||||||| |||||||| ATGTATAGAC GGAACTAC 739 hqPGS_C10SLe0045H11.1+_SGN-E548037+ (613 1350) ******************************************************************************** EST sequence 5 -strand 711 n (File: SGN-E538252-) 1 AATATAGAAA GTTTAGTCTC ACGAGTGATG TTTGAGAATA GTAAAATGTA CATATTATTA 61 GAGAGGTTGT TTTCGATAGA CTTTTGAGTC GAATGCATTT GACATTCTTT TTCTTCAAAT 121 AGAAAAGGAA GGTGATGTGA TTTGGTATTT GATCTATCTT CGGATTGAAC TCATTTTGAT 181 CCAAACAAAT TTTAGGTGAA CGAACTCGTA TCAAATATCG ATGTTTAGTT TCATGTTAGA 241 CATCAAGTTT GACTTCAGTT CGTTCAATTG TCACCTCTAG TCCGAGGACA TTAATACATG 301 CATGTGCGTT TGCAGTTTAT ATGTTGAATC CGTCTCATTA TTGTGATTTT TCTAACGTTA 361 CGATTAAATA CGATTACCGG ATGAAGAGGC ATGTTCGTCG AGTTTGTTGT TGGAAGAGAA 421 CAAGAGAACA TCTTCATCCA TAGGGTTCTT GAGACCAATG AAGGTGCTTC GAACCAATGA 481 TTACTAACAT ACTCAGTGTA ATTTCATAAT TGAGGTCTGA AATTATATCG TCGTTATTAT 541 GCAAAATCTT GTTTCTCTAC GATCGATCAT TTGACTACAA AGAGAAATAC ACAAATAGAA 601 TTATACATTT TCCTTTTCAT GCTTCTTATT TTTTTTCTTC TTGATTCTCT TTGTAATTTT 661 ACTTGGAAGA ATTAGTGAAC CAAGATCCAT TCTTTTCTGG AAAAAAAAAA A Predicted gene structure (within gDNA segment 1932 to 1): Exon 1 1322 613 ( 710 n); cDNA 1 710 ( 710 n); score: 0.990 MATCH C10SLe0045H11.1- SGN-E538252- 0.990 710 0.999 C PGS_C10SLe0045H11.1-_SGN-E538252- (1322 613) Alignment (genomic DNA sequence = upper lines): AATATAGAAA GTTTAGTCTC ACGAGTGATG TTTGAGAATA GTAAAATGTA CATATTATTA 1263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATAGAAA GTTTAGTCTC ACGAGTGATG TTTGAGAATA GTAAAATGTA CATATTATTA 60 GAGAGGTTGT TTTCGATAGA CTTTTGAGTC GAATGCATTT GACATTCTTT TTCTTCAAAT 1203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGGTTGT TTTCGATAGA CTTTTGAGTC GAATGCATTT GACATTCTTT TTCTTCAAAT 120 AGAAAAGGAA GGTGATGTGA TTTGGTATTT GATCTATCTT CGGATTGAAC TCATTTTGAT 1143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAAGGAA GGTGATGTGA TTTGGTATTT GATCTATCTT CGGATTGAAC TCATTTTGAT 180 CCAAACAAAT TTTAGGTGAA CGAACTCGTA TCAAATATCG ATGTTTAGTT TCATGTTAGA 1083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAACAAAT TTTAGGTGAA CGAACTCGTA TCAAATATCG ATGTTTAGTT TCATGTTAGA 240 CATCAAGTTT GACTTCAGTT CGTTCAATTG TCACCTCTAG TCCGAGGACA TTAATACATG 1023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCAAGTTT GACTTCAGTT CGTTCAATTG TCACCTCTAG TCCGAGGACA TTAATACATG 300 CATGTGCGTT TGCAGTTTAT ATGTTGAATC CGTCTCATTA TTGTGATTTT TCTAACGTTA 963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTGCGTT TGCAGTTTAT ATGTTGAATC CGTCTCATTA TTGTGATTTT TCTAACGTTA 360 CGATTAAATA CGATTACCGG ATGAAGAGGC ATGTTCGTCG AGTTTGTTGT TGGAAGAGAA 903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATTAAATA CGATTACCGG ATGAAGAGGC ATGTTCGTCG AGTTTGTTGT TGGAAGAGAA 420 CAAGAGAACA TCTTCATCCA TAGGGTTCTT GAGACCAATG AAGGTGCTTC GAACCAATGA 843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAGAACA TCTTCATCCA TAGGGTTCTT GAGACCAATG AAGGTGCTTC GAACCAATGA 480 TTACTAACAT ACTCAGTGTA ATTTCATAAT TGAGGTCTGA AATTATATCG TCGTTATTAT 783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTAACAT ACTCAGTGTA ATTTCATAAT TGAGGTCTGA AATTATATCG TCGTTATTAT 540 GCAAAATCTT GTTTCTCTAC GATCGATCAT TTGACTACAA AGAGAAATAC ACAAATAGAA 723 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAATCTT GTTTCTCTAC GATCGATCAT TTGACTACAA AGAGAAATAC ACAAATAGAA 600 TTATACATTT TCCTTTTCAT GCTTCTTATT TTTTTTCTTC TTGATTCTCT TTGTAATTTT 663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATACATTT TCCTTTTCAT GCTTCTTATT TTTTTTCTTC TTGATTCTCT TTGTAATTTT 660 ACTTGGAAGA ATTAGTGAAC CAAGATCCAT TCTTTTCTTG GAACTTCCAA 613 |||||||||| |||||||||| |||||||||| |||||||| | || || ACTTGGAAGA ATTAGTGAAC CAAGATCCAT TCTTTTCTGG AAAAAAAAAA 710 hqPGS_C10SLe0045H11.1-_SGN-E538252- (1322 613) ******************************************************************************** EST sequence 19 -strand 690 n (File: SGN-E548068-) 1 GAGTGATGTT TGAGAATAGT AAAATGTACA TATTATTAGA GAGGTTGTTT TCGATAGACT 61 TTTGAGTCGA ATGCATTTGA CATTCTTTTT TCTTCAAATA GAAAAGGAAG GTGATGTGAT 121 TTGGTATTTG ATCTATCTTC GGATTGAACT CATTTTGATC CAAACAAATT TTAGGTGAAC 181 GAACTCGTAT CAAATATCGA TGTTTAGTTT CATGTTAGAC ATCAAGTTTG ACTTCAGTTC 241 GTTCAATTGT CACCTCTAGT CCGAGGACAT TAATACATGC ATGTGCGTTT GCAGTTTATA 301 TGTTGAATCC GTCTCATTAT TGTGATTTTT CTAACGTTAC GATTAAATAC GATTACCGGA 361 TGAAGAGGCA TGTTCGTCGA GTTTGTTGTT GGAAGAGAAC AAGAGAACAT CTTCATCCAT 421 AGGGTTCTTG AGACCAATGA AGGTGCTTCG AACCAATGAT TACTAACATA CTCAGTGTAA 481 TTTCATAATT GAGGTCTGAA ATTATATCGT CGTTATTATG CAAAATCTTG TTTCTCTACG 541 ATCGATCATT TGACTACAAA GAGAAATACA CAAATAGAAT TATACATTTT CCTTTTCATG 601 CTTCTTATTT TTTTTCTTCT TGATTCTCTT TGTAATTTTA CTTGGAAGAA TTAGTGAACC 661 AAGATCCATT CTTTTCTGGA AAAAAAAAAA Predicted gene structure (within gDNA segment 1910 to 1): Exon 1 1300 613 ( 688 n); cDNA 1 689 ( 689 n); score: 0.986 MATCH C10SLe0045H11.1- SGN-E548068- 0.986 688 0.997 C PGS_C10SLe0045H11.1-_SGN-E548068- (1300 613) Alignment (genomic DNA sequence = upper lines): GAGTGATGTT TGAGAATAGT AAAATGTACA TATTATTAGA GAGGTTGTTT TCGATAGACT 1241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGATGTT TGAGAATAGT AAAATGTACA TATTATTAGA GAGGTTGTTT TCGATAGACT 60 TTTGAGTCGA ATGCATTTGA CATTC-TTTT TCTTCAAATA GAAAAGGAAG GTGATGTGAT 1182 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TTTGAGTCGA ATGCATTTGA CATTCTTTTT TCTTCAAATA GAAAAGGAAG GTGATGTGAT 120 TTGGTATTTG ATCTATCTTC GGATTGAACT CATTTTGATC CAAACAAATT TTAGGTGAAC 1122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTATTTG ATCTATCTTC GGATTGAACT CATTTTGATC CAAACAAATT TTAGGTGAAC 180 GAACTCGTAT CAAATATCGA TGTTTAGTTT CATGTTAGAC ATCAAGTTTG ACTTCAGTTC 1062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTCGTAT CAAATATCGA TGTTTAGTTT CATGTTAGAC ATCAAGTTTG ACTTCAGTTC 240 GTTCAATTGT CACCTCTAGT CCGAGGACAT TAATACATGC ATGTGCGTTT GCAGTTTATA 1002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAATTGT CACCTCTAGT CCGAGGACAT TAATACATGC ATGTGCGTTT GCAGTTTATA 300 TGTTGAATCC GTCTCATTAT TGTGATTTTT CTAACGTTAC GATTAAATAC GATTACCGGA 942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGAATCC GTCTCATTAT TGTGATTTTT CTAACGTTAC GATTAAATAC GATTACCGGA 360 TGAAGAGGCA TGTTCGTCGA GTTTGTTGTT GGAAGAGAAC AAGAGAACAT CTTCATCCAT 882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGAGGCA TGTTCGTCGA GTTTGTTGTT GGAAGAGAAC AAGAGAACAT CTTCATCCAT 420 AGGGTTCTTG AGACCAATGA AGGTGCTTCG AACCAATGAT TACTAACATA CTCAGTGTAA 822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGTTCTTG AGACCAATGA AGGTGCTTCG AACCAATGAT TACTAACATA CTCAGTGTAA 480 TTTCATAATT GAGGTCTGAA ATTATATCGT CGTTATTATG CAAAATCTTG TTTCTCTACG 762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCATAATT GAGGTCTGAA ATTATATCGT CGTTATTATG CAAAATCTTG TTTCTCTACG 540 ATCGATCATT TGACTACAAA GAGAAATACA CAAATAGAAT TATACATTTT CCTTTTCATG 702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGATCATT TGACTACAAA GAGAAATACA CAAATAGAAT TATACATTTT CCTTTTCATG 600 CTTCTTATTT TTTTTCTTCT TGATTCTCTT TGTAATTTTA CTTGGAAGAA TTAGTGAACC 642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTTATTT TTTTTCTTCT TGATTCTCTT TGTAATTTTA CTTGGAAGAA TTAGTGAACC 660 AAGATCCATT CTTTTCTTGG AACTTCCAA 613 |||||||||| ||||||| | || || AAGATCCATT CTTTTCTGGA AAAAAAAAA 689 hqPGS_C10SLe0045H11.1-_SGN-E548068- (1300 613) ******************************************************************************** EST sequence 17 -strand 676 n (File: SGN-E538412-) 1 AATAGTAAAA TGTACATATT ATTAGAGAGG TTGTTTTCGA TAAGACTTTT GAGTCGAATG 61 CATTTGACAT TCTTTTTCTT CAAATAGAAA AGGAAGGTGA TGTGATTTGG TATTTGATCT 121 ATCTTCGGAT TGAACTCATT TTGATCCAAA CAAATTTTAG GTGAACGAAC TCGTATCAAA 181 TATCGATGTT TAGTTTCATG TTAGACATCA AGTTTGACTT CAGTTCGTTC AATTGTCACC 241 TCTAGTCCGA GGACATTAAT ACATGCATGT GCGTTTGCAG TTTATATGTT GAATCCGTCT 301 CATTATTGTG ATTTTTCTAA CGTTACGATT AAATACGATT ACCGGATGAA GAGGCATGTT 361 CGTCGAGTTT GTTGTTGGAA GAGAACAAGA GAACATCTTC ATCCATAGGG TTCTTGAGAC 421 CAATGAAGGT GCTTCGAACC AATGATTACT AACATACTCA GTGTAATTTC ATAATTGAGG 481 TCTGAAATTA TATCGTCGTT ATTATGCAAA ATCTTGTTTC TCTACGATCG ATCATTTGAC 541 TACAAAGAGA AATACACAAA TAGAATTATA CATTTTCCTT TTCATGCTTC TTATTTTTTT 601 TCTTCTTGAT TCTCTTTGTA ATTTTACTTG GAAGAATTAG TGAACCAAGA TCCATTCTTT 661 TCTGGAAAAA TAGAAA Predicted gene structure (within gDNA segment 1896 to 1): Exon 1 1286 613 ( 674 n); cDNA 1 675 ( 675 n); score: 0.987 MATCH C10SLe0045H11.1- SGN-E538412- 0.987 674 0.997 C PGS_C10SLe0045H11.1-_SGN-E538412- (1286 613) Alignment (genomic DNA sequence = upper lines): AATAGTAAAA TGTACATATT ATTAGAGAGG TTGTTTTCGA T-AGACTTTT GAGTCGAATG 1228 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| AATAGTAAAA TGTACATATT ATTAGAGAGG TTGTTTTCGA TAAGACTTTT GAGTCGAATG 60 CATTTGACAT TCTTTTTCTT CAAATAGAAA AGGAAGGTGA TGTGATTTGG TATTTGATCT 1168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTGACAT TCTTTTTCTT CAAATAGAAA AGGAAGGTGA TGTGATTTGG TATTTGATCT 120 ATCTTCGGAT TGAACTCATT TTGATCCAAA CAAATTTTAG GTGAACGAAC TCGTATCAAA 1108 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTCGGAT TGAACTCATT TTGATCCAAA CAAATTTTAG GTGAACGAAC TCGTATCAAA 180 TATCGATGTT TAGTTTCATG TTAGACATCA AGTTTGACTT CAGTTCGTTC AATTGTCACC 1048 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCGATGTT TAGTTTCATG TTAGACATCA AGTTTGACTT CAGTTCGTTC AATTGTCACC 240 TCTAGTCCGA GGACATTAAT ACATGCATGT GCGTTTGCAG TTTATATGTT GAATCCGTCT 988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTAGTCCGA GGACATTAAT ACATGCATGT GCGTTTGCAG TTTATATGTT GAATCCGTCT 300 CATTATTGTG ATTTTTCTAA CGTTACGATT AAATACGATT ACCGGATGAA GAGGCATGTT 928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTATTGTG ATTTTTCTAA CGTTACGATT AAATACGATT ACCGGATGAA GAGGCATGTT 360 CGTCGAGTTT GTTGTTGGAA GAGAACAAGA GAACATCTTC ATCCATAGGG TTCTTGAGAC 868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCGAGTTT GTTGTTGGAA GAGAACAAGA GAACATCTTC ATCCATAGGG TTCTTGAGAC 420 CAATGAAGGT GCTTCGAACC AATGATTACT AACATACTCA GTGTAATTTC ATAATTGAGG 808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGAAGGT GCTTCGAACC AATGATTACT AACATACTCA GTGTAATTTC ATAATTGAGG 480 TCTGAAATTA TATCGTCGTT ATTATGCAAA ATCTTGTTTC TCTACGATCG ATCATTTGAC 748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGAAATTA TATCGTCGTT ATTATGCAAA ATCTTGTTTC TCTACGATCG ATCATTTGAC 540 TACAAAGAGA AATACACAAA TAGAATTATA CATTTTCCTT TTCATGCTTC TTATTTTTTT 688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAAGAGA AATACACAAA TAGAATTATA CATTTTCCTT TTCATGCTTC TTATTTTTTT 600 TCTTCTTGAT TCTCTTTGTA ATTTTACTTG GAAGAATTAG TGAACCAAGA TCCATTCTTT 628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTGAT TCTCTTTGTA ATTTTACTTG GAAGAATTAG TGAACCAAGA TCCATTCTTT 660 TCTTGGAACT TCCAA 613 ||| | || | || TCTGGAAAAA TAGAA 675 hqPGS_C10SLe0045H11.1-_SGN-E538412- (1286 613) ******************************************************************************** EST sequence 6 -strand 603 n (File: SGN-E538259-) 1 TTTCTTTCAA ATAGAAAAGG AAGGTGATGT GATTTGGTAT TTGATCTATC TTCGGATTGA 61 ACTCATTTTG ATCCAAACAA ATTTTAGGTG AACGAACTCG TATCAAATAT CGATGTTTAG 121 TTTCATGTTA GACATCAAGT TTGACTTCAG TTCGTTCAAT TGTCACCTCT AGTCCGAGGA 181 CATTAATACA TGCATGTGCG TTTGCAGTTT ATATGTTGAA TCCGTCTCAT TATTGTGATT 241 TTTCTAACGT TACGATTAAA TACGATTACC GGATGAAGAG GCATGTTCGT CGAGTTTGTT 301 GTTGGAAGAG AACAAGAGAA CATCTTCATC CATAGGGTTC TTGAGACCAA TGAAGGTGCT 361 TCGAACCAAT GATTACTAAC ATACTCAGTG TAATTTCATA ATTGAGGTCT GAAATTATAT 421 CGTCGTTATT ATGCAAAATC TTGTTTCTCT ACGATCGATC ATTTGACTAC AAAGAGAAAT 481 ACACAAATAG AATTATACAT TTTCCTTTTC ATGCTTCTTA TTTTTTTTCT TCTTGATTCT 541 CTTTGTAATT TTACTTGGAA GAATTAGTGA ACCAAGATCC ATTCTTTTCT CCAAAAAAAG 601 AAA Predicted gene structure (within gDNA segment 1869 to 1): Exon 1 1214 613 ( 602 n); cDNA 1 602 ( 602 n); score: 0.983 MATCH C10SLe0045H11.1- SGN-E538259- 0.983 602 0.998 C PGS_C10SLe0045H11.1-_SGN-E538259- (1214 613) Alignment (genomic DNA sequence = upper lines): TTTTCTTCAA ATAGAAAAGG AAGGTGATGT GATTTGGTAT TTGATCTATC TTCGGATTGA 1155 ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTTCAA ATAGAAAAGG AAGGTGATGT GATTTGGTAT TTGATCTATC TTCGGATTGA 60 ACTCATTTTG ATCCAAACAA ATTTTAGGTG AACGAACTCG TATCAAATAT CGATGTTTAG 1095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCATTTTG ATCCAAACAA ATTTTAGGTG AACGAACTCG TATCAAATAT CGATGTTTAG 120 TTTCATGTTA GACATCAAGT TTGACTTCAG TTCGTTCAAT TGTCACCTCT AGTCCGAGGA 1035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCATGTTA GACATCAAGT TTGACTTCAG TTCGTTCAAT TGTCACCTCT AGTCCGAGGA 180 CATTAATACA TGCATGTGCG TTTGCAGTTT ATATGTTGAA TCCGTCTCAT TATTGTGATT 975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTAATACA TGCATGTGCG TTTGCAGTTT ATATGTTGAA TCCGTCTCAT TATTGTGATT 240 TTTCTAACGT TACGATTAAA TACGATTACC GGATGAAGAG GCATGTTCGT CGAGTTTGTT 915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTAACGT TACGATTAAA TACGATTACC GGATGAAGAG GCATGTTCGT CGAGTTTGTT 300 GTTGGAAGAG AACAAGAGAA CATCTTCATC CATAGGGTTC TTGAGACCAA TGAAGGTGCT 855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGAAGAG AACAAGAGAA CATCTTCATC CATAGGGTTC TTGAGACCAA TGAAGGTGCT 360 TCGAACCAAT GATTACTAAC ATACTCAGTG TAATTTCATA ATTGAGGTCT GAAATTATAT 795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAACCAAT GATTACTAAC ATACTCAGTG TAATTTCATA ATTGAGGTCT GAAATTATAT 420 CGTCGTTATT ATGCAAAATC TTGTTTCTCT ACGATCGATC ATTTGACTAC AAAGAGAAAT 735 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCGTTATT ATGCAAAATC TTGTTTCTCT ACGATCGATC ATTTGACTAC AAAGAGAAAT 480 ACACAAATAG AATTATACAT TTTCCTTTTC ATGCTTCTTA TTTTTTTTCT TCTTGATTCT 675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACAAATAG AATTATACAT TTTCCTTTTC ATGCTTCTTA TTTTTTTTCT TCTTGATTCT 540 CTTTGTAATT TTACTTGGAA GAATTAGTGA ACCAAGATCC ATTCTTTTCT TGGAACTTCC 615 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || CTTTGTAATT TTACTTGGAA GAATTAGTGA ACCAAGATCC ATTCTTTTCT CCAAAAAAAG 600 AA 613 || AA 602 hqPGS_C10SLe0045H11.1-_SGN-E538259- (1214 613) ******************************************************************************** EST sequence 26 -strand 568 n (File: SGN-E548105-) 1 GGTATTTGAT CTATCTTCGG ATTGAACTCA TTTTGATCCA AACAAATTTT AGGTGAACGA 61 ACTCGTATCA AATATCGATG TTTAGTTTCA TGTTAGACAT CAAGTTTGAC TTCAGTTCGT 121 TCAATTGTCA CCTCTAGTCC GAGGACATTA ATACATGCAT GTGCGTTTGC AGTTTATATG 181 TTGAATCCGT CTCATTATTG TGATTTTTCT AACGTTACGA TTAAATACGA TTACCGGATG 241 AAGAGGCATG TTCGTCGAGT TTGTTGTTGG AAGAGAACAA GAGAACATCT TCATCCATAG 301 GGTTCTTGAG ACCAATGAAG GTGCTTCGAA CCAATGATTA CTAACATACT CAGTGTAATT 361 TCATAATTGA GGTCTGAAAT TATATCGTCG TTATTATGCA AAATCTTGTT TCTCTACGAT 421 CGATCATTTG ACTACAAAGA GAAATACACA AATAGAATTA TACATTTTCC TTTTCATGCT 481 TCTTATTTTT TTTCTTCTTG ATTCTCTTTG TAATTTTACT TGGAAGAATT AGTGAACCAA 541 GATCCATTCT TTTCCGCCAA TATAGAAA Predicted gene structure (within gDNA segment 1789 to 1): Exon 1 1179 613 ( 567 n); cDNA 1 567 ( 567 n); score: 0.986 MATCH C10SLe0045H11.1- SGN-E548105- 0.986 567 0.998 C PGS_C10SLe0045H11.1-_SGN-E548105- (1179 613) Alignment (genomic DNA sequence = upper lines): GGTATTTGAT CTATCTTCGG ATTGAACTCA TTTTGATCCA AACAAATTTT AGGTGAACGA 1120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTATTTGAT CTATCTTCGG ATTGAACTCA TTTTGATCCA AACAAATTTT AGGTGAACGA 60 ACTCGTATCA AATATCGATG TTTAGTTTCA TGTTAGACAT CAAGTTTGAC TTCAGTTCGT 1060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCGTATCA AATATCGATG TTTAGTTTCA TGTTAGACAT CAAGTTTGAC TTCAGTTCGT 120 TCAATTGTCA CCTCTAGTCC GAGGACATTA ATACATGCAT GTGCGTTTGC AGTTTATATG 1000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATTGTCA CCTCTAGTCC GAGGACATTA ATACATGCAT GTGCGTTTGC AGTTTATATG 180 TTGAATCCGT CTCATTATTG TGATTTTTCT AACGTTACGA TTAAATACGA TTACCGGATG 940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAATCCGT CTCATTATTG TGATTTTTCT AACGTTACGA TTAAATACGA TTACCGGATG 240 AAGAGGCATG TTCGTCGAGT TTGTTGTTGG AAGAGAACAA GAGAACATCT TCATCCATAG 880 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCATG TTCGTCGAGT TTGTTGTTGG AAGAGAACAA GAGAACATCT TCATCCATAG 300 GGTTCTTGAG ACCAATGAAG GTGCTTCGAA CCAATGATTA CTAACATACT CAGTGTAATT 820 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCTTGAG ACCAATGAAG GTGCTTCGAA CCAATGATTA CTAACATACT CAGTGTAATT 360 TCATAATTGA GGTCTGAAAT TATATCGTCG TTATTATGCA AAATCTTGTT TCTCTACGAT 760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATAATTGA GGTCTGAAAT TATATCGTCG TTATTATGCA AAATCTTGTT TCTCTACGAT 420 CGATCATTTG ACTACAAAGA GAAATACACA AATAGAATTA TACATTTTCC TTTTCATGCT 700 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCATTTG ACTACAAAGA GAAATACACA AATAGAATTA TACATTTTCC TTTTCATGCT 480 TCTTATTTTT TTTCTTCTTG ATTCTCTTTG TAATTTTACT TGGAAGAATT AGTGAACCAA 640 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTATTTTT TTTCTTCTTG ATTCTCTTTG TAATTTTACT TGGAAGAATT AGTGAACCAA 540 GATCCATTCT TTTCTTGGAA CTTCCAA 613 |||||||||| |||| || | || GATCCATTCT TTTCCGCCAA TATAGAA 567 hqPGS_C10SLe0045H11.1-_SGN-E548105- (1179 613) ******************************************************************************** EST sequence 7 +strand 817 n (File: SGN-E538294+) 1 TTTTTTTTTT TCCAAGAAAA GAATGGATCT GTGGTTCACT AATTCTTCCA AGTAAAATTA 61 CAAAGAGAAT CAAGAAGAAA AAAAATAAGA AGCATGAAAA GGAAAATGTA TAATTCTATT 121 TGTGTATTTC TCTTTGTAGT CAAATGATCG ATCGTAGAGA AACAAGATTT TGCATAATAA 181 CGACGATATA ATTTCAGACC TCAATTATGA AATTACACTG AGTATGTTAG TAATCATTGG 241 TTCGAAGCAC CTTCATTGGT CTCAAGAACC CTATGGATGA AGATGTTCTC TTGTTCTCTT 301 CCAACAACAA ACTCGACGAA CATGCCTCTT CATCCGGTAA TCGTATTTAA TCGTAACGTT 361 AGAAAAATCA CAATAATGAG ACGGATTCAA CATATAAACT GCAAACGCAC ATGCATGTAT 421 TAATGTCCTC GGACTAGAGG TGACAATTGA ACGAACTGAA GTCAAACTTG ATGTCTAACA 481 TGAAACTAAA CATCGATATT TGATACGAGT TCGTTCACCT AAAATTTGTT TGGATCAAAA 541 TGAGTTCAAT CCGAAGATAG ATCAAATACC AAATCACATC ACCTTCCTTT TCTATTTGAA 601 GAAAAAGAAT GTCAAATGCA TTCGACTCAA AAGTCTATCG AAAACAACCT CTCTAATAAT 661 ATGTACATTT TACTATTCTC AAACATCACT CGTGAGACTA AACTTTCTAT ATTGTTATCG 721 TCGATGTATA GACGGAACTA CAAAATCTTA CTTACGCATT CGACAAAACT CAATAACTCG 781 TAAACTTCGT ATTTATATTT TAAAATCACT ATCCCGT Predicted gene structure (within gDNA segment 1 to 2117): Exon 1 620 1427 ( 808 n); cDNA 10 817 ( 808 n); score: 0.996 MATCH C10SLe0045H11.1+ SGN-E538294+ 0.996 808 0.989 C PGS_C10SLe0045H11.1+_SGN-E538294+ (620 1427) Alignment (genomic DNA sequence = upper lines): TTCCAAGAAA AGAATGGATC T-TGGTTCAC TAATTCTTCC AAGTAAAATT ACAAAGAGAA 678 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TTCCAAGAAA AGAATGGATC TGTGGTTCAC TAATTCTTCC AAGTAAAATT ACAAAGAGAA 69 TCAAGAAGAA AAAAAATAAG AAGCATGAAA AGGAAAATGT ATAATTCTAT TTGTGTATTT 738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGAAGAA AAAAAATAAG AAGCATGAAA AGGAAAATGT ATAATTCTAT TTGTGTATTT 129 CTCTTTGTAG TCAAATGATC GATCGTAGAG AAACAAGATT TTGCATAATA ACGACGATAT 798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTTGTAG TCAAATGATC GATCGTAGAG AAACAAGATT TTGCATAATA ACGACGATAT 189 AATTTCAGAC CTCAATTATG AAATTACACT GAGTATGTTA GTAATCATTG GTTCGAAGCA 858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTCAGAC CTCAATTATG AAATTACACT GAGTATGTTA GTAATCATTG GTTCGAAGCA 249 CCTTCATTGG TCTCAAGAAC CCTATGGATG AAGATGTTCT CTTGTTCTCT TCCAACAACA 918 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCATTGG TCTCAAGAAC CCTATGGATG AAGATGTTCT CTTGTTCTCT TCCAACAACA 309 AACTCGACGA ACATGCCTCT TCATCCGGTA ATCGTATTTA ATCGTAACGT TAGAAAAATC 978 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCGACGA ACATGCCTCT TCATCCGGTA ATCGTATTTA ATCGTAACGT TAGAAAAATC 369 ACAATAATGA GACGGATTCA ACATATAAAC TGCAAACGCA CATGCATGTA TTAATGTCCT 1038 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATAATGA GACGGATTCA ACATATAAAC TGCAAACGCA CATGCATGTA TTAATGTCCT 429 CGGACTAGAG GTGACAATTG AACGAACTGA AGTCAAACTT GATGTCTAAC ATGAAACTAA 1098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGACTAGAG GTGACAATTG AACGAACTGA AGTCAAACTT GATGTCTAAC ATGAAACTAA 489 ACATCGATAT TTGATACGAG TTCGTTCACC TAAAATTTGT TTGGATCAAA ATGAGTTCAA 1158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCGATAT TTGATACGAG TTCGTTCACC TAAAATTTGT TTGGATCAAA ATGAGTTCAA 549 TCCGAAGATA GATCAAATAC CAAATCACAT CACCTTCCTT TTCTATTTGA AGAAAAAGAA 1218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGAAGATA GATCAAATAC CAAATCACAT CACCTTCCTT TTCTATTTGA AGAAAAAGAA 609 TGTCAAATGC ATTCGACTCA AAAGTCTATC GAAAACAACC TCTCTAATAA TATGTACATT 1278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAAATGC ATTCGACTCA AAAGTCTATC GAAAACAACC TCTCTAATAA TATGTACATT 669 TTACTATTCT CAAACATCAC TCGTGAGACT AAACTTTCTA TATTGTTATC GTCGATGTAT 1338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTATTCT CAAACATCAC TCGTGAGACT AAACTTTCTA TATTGTTATC GTCGATGTAT 729 AGACGGAACT ACAAAATCTT ACTTACGCAT TCGACAAAAC TCAATAACTC GTAAACTTCG 1398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACGGAACT ACAAAATCTT ACTTACGCAT TCGACAAAAC TCAATAACTC GTAAACTTCG 789 TATTTATATT TTAAAATCAA CTATCCCGT 1427 |||||||||| |||||||| | ||||||||| TATTTATATT TTAAAATC-A CTATCCCGT 817 hqPGS_C10SLe0045H11.1+_SGN-E538294+ (620 1427) ******************************************************************************** EST sequence 9 +strand 799 n (File: SGN-E538364+) 1 CGGGCCCCCC TCGAGTTTTT TTTTTTTTTT TTTTCCAGAA AAGAATGGAT CTTGGTTCAC 61 TAATTCTTCC AAGTAAAATT ACAAAGAGAA TCAAGAAGAA AAAAAATAAG AAGCATGAAA 121 AGGAAAATGT ATAATTCTAT TTGTGTATTT CTCTTTGTAG TCAAATGATC GATCGTAGAG 181 AAACAAGATT TTGCATAATA ACGACGATAT AATTTCAGAC CTCAATTATG AAATTACACT 241 GAGTATGTTA GTAATCATTG GTTCGAAGCA CCTTCATTGG TCTCAAGAAC CCTATGGATG 301 AAGATGTTCT CTTGTTCTCT TCCAACAACA AACTCGACGA ACATGCCTCT TCATCCGGTA 361 ATCGTATTTA ATCGTAACGT TAGAAAAATC ACAATAATGA GACGGATTCA ACATATAAAC 421 TGCAAACGCA CATGCATGTA TTAATGTCCT CGGACTAGAG GTGACAATTG AACGAACTGA 481 AGTCAAACTT GATGTCTAAC ATGAAACTAA ACATCGATAT TTGATACGAG TTCGTTCACC 541 TAAAATTTGT TTGGATCAAA ATGAGTTCAA TCCGAAGATA GATCAAATAC CAAATCACAT 601 CACCTTCCTT TTCTATTTGA AGAAAAAGAA TGTCAAATGC ATTCGACTCA AAAGTCTATC 661 GAAAACAACC TCTCTAATAA TATGTACATT TTACTATTCT CAAACATCAC TCGTGAGACT 721 AAACTTTCTA TATTGTTATC GTCGATGTAT AGACGGAACT ACAAAATCTT ACTTACGCAT 781 TCGACAAAAC TCAATAACT Predicted gene structure (within gDNA segment 1 to 1997): Exon 1 620 1387 ( 768 n); cDNA 32 799 ( 768 n); score: 0.997 PPA cDNA 31 15 MATCH C10SLe0045H11.1+ SGN-E538364+ 0.997 768 0.961 C PGS_C10SLe0045H11.1+_SGN-E538364+ (620 1387) Alignment (genomic DNA sequence = upper lines): TTCCAAGAAA AGAATGGATC TTGGTTCACT AATTCTTCCA AGTAAAATTA CAAAGAGAAT 679 || | ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCAGAAA AGAATGGATC TTGGTTCACT AATTCTTCCA AGTAAAATTA CAAAGAGAAT 91 CAAGAAGAAA AAAAATAAGA AGCATGAAAA GGAAAATGTA TAATTCTATT TGTGTATTTC 739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAAGAAA AAAAATAAGA AGCATGAAAA GGAAAATGTA TAATTCTATT TGTGTATTTC 151 TCTTTGTAGT CAAATGATCG ATCGTAGAGA AACAAGATTT TGCATAATAA CGACGATATA 799 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTGTAGT CAAATGATCG ATCGTAGAGA AACAAGATTT TGCATAATAA CGACGATATA 211 ATTTCAGACC TCAATTATGA AATTACACTG AGTATGTTAG TAATCATTGG TTCGAAGCAC 859 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCAGACC TCAATTATGA AATTACACTG AGTATGTTAG TAATCATTGG TTCGAAGCAC 271 CTTCATTGGT CTCAAGAACC CTATGGATGA AGATGTTCTC TTGTTCTCTT CCAACAACAA 919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCATTGGT CTCAAGAACC CTATGGATGA AGATGTTCTC TTGTTCTCTT CCAACAACAA 331 ACTCGACGAA CATGCCTCTT CATCCGGTAA TCGTATTTAA TCGTAACGTT AGAAAAATCA 979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCGACGAA CATGCCTCTT CATCCGGTAA TCGTATTTAA TCGTAACGTT AGAAAAATCA 391 CAATAATGAG ACGGATTCAA CATATAAACT GCAAACGCAC ATGCATGTAT TAATGTCCTC 1039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATAATGAG ACGGATTCAA CATATAAACT GCAAACGCAC ATGCATGTAT TAATGTCCTC 451 GGACTAGAGG TGACAATTGA ACGAACTGAA GTCAAACTTG ATGTCTAACA TGAAACTAAA 1099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACTAGAGG TGACAATTGA ACGAACTGAA GTCAAACTTG ATGTCTAACA TGAAACTAAA 511 CATCGATATT TGATACGAGT TCGTTCACCT AAAATTTGTT TGGATCAAAA TGAGTTCAAT 1159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCGATATT TGATACGAGT TCGTTCACCT AAAATTTGTT TGGATCAAAA TGAGTTCAAT 571 CCGAAGATAG ATCAAATACC AAATCACATC ACCTTCCTTT TCTATTTGAA GAAAAAGAAT 1219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAAGATAG ATCAAATACC AAATCACATC ACCTTCCTTT TCTATTTGAA GAAAAAGAAT 631 GTCAAATGCA TTCGACTCAA AAGTCTATCG AAAACAACCT CTCTAATAAT ATGTACATTT 1279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAAATGCA TTCGACTCAA AAGTCTATCG AAAACAACCT CTCTAATAAT ATGTACATTT 691 TACTATTCTC AAACATCACT CGTGAGACTA AACTTTCTAT ATTGTTATCG TCGATGTATA 1339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTATTCTC AAACATCACT CGTGAGACTA AACTTTCTAT ATTGTTATCG TCGATGTATA 751 GACGGAACTA CAAAATCTTA CTTACGCATT CGACAAAACT CAATAACT 1387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACGGAACTA CAAAATCTTA CTTACGCATT CGACAAAACT CAATAACT 799 hqPGS_C10SLe0045H11.1+_SGN-E538364+ (620 1387) ******************************************************************************** EST sequence 14 +strand 775 n (File: SGN-E538396+) 1 CCCCCCTCGA GTTTTTTTTT TTTTTTTTTT CCAGAAAAGA TGGATCTTGG TTCACTAATT 61 CTTCCAAGTA AAATTACAAA GAGAATCAAG AAGAAAAAAA ATAAGAAGCA TGAAAAGGAA 121 AATGTATAAT TCTATTTGTG TATTTCTCTT TGTAGTCAAA TGATCGATCG TAGAGAAACA 181 AGATTTTGCA TAATAACGAC GATATAATTT CAGACCTCAA TTATGAAATT ACACTGAGTA 241 TGTTAGTAAT CATTGGTTCG AAGCACCTTC ATTGGTCTCA AGAACCCTAT GGATGAAGAT 301 GTTCTCTTGT TCTCTTCCAA CAACAAACTC GACGAACATG CCTCTTCATC CGGTAATCGT 361 ATTTAATCGT AACGTTAGAA AAATCACAAT AATGAGACGG ATTCAACATA TAAACTGCAA 421 ACGCACATGC ATGTATTAAT GTCCTCGGAC TAGAGGTGAC AATTGAACGA ACTGAAGTCA 481 AACTTGATGT CTAACATGAA ACTAAACATC GATATTTGAT ACGAGTTCGT TCACCTAAAA 541 TTTGTTTGGA TCAAAATGAG TTCAATCCGA AGATAGATCA AATACCAAAT CACATCACCT 601 TCCTTTTCTA TTTGAAGAAA AAGAATGTCA AATGCATTCG ACTCAAAAGT CTATCGAAAA 661 CAACCTCTCT AATAATATGT ACATTTTACT ATTCTCAAAC ATCACTCGTG AGACTAAACT 721 TTCTATATTG TTATCGTCGA TGTATAGACG GAACTACAAA ATCTTACTTA CGCAT Predicted gene structure (within gDNA segment 1 to 1978): Exon 1 620 1368 ( 749 n); cDNA 28 775 ( 748 n); score: 0.996 PPA cDNA 27 11 MATCH C10SLe0045H11.1+ SGN-E538396+ 0.996 749 0.966 C PGS_C10SLe0045H11.1+_SGN-E538396+ (620 1368) Alignment (genomic DNA sequence = upper lines): TTCCAAGAAA AGAATGGATC TTGGTTCACT AATTCTTCCA AGTAAAATTA CAAAGAGAAT 679 || | ||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCAGAAA AG-ATGGATC TTGGTTCACT AATTCTTCCA AGTAAAATTA CAAAGAGAAT 86 CAAGAAGAAA AAAAATAAGA AGCATGAAAA GGAAAATGTA TAATTCTATT TGTGTATTTC 739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAAGAAA AAAAATAAGA AGCATGAAAA GGAAAATGTA TAATTCTATT TGTGTATTTC 146 TCTTTGTAGT CAAATGATCG ATCGTAGAGA AACAAGATTT TGCATAATAA CGACGATATA 799 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTGTAGT CAAATGATCG ATCGTAGAGA AACAAGATTT TGCATAATAA CGACGATATA 206 ATTTCAGACC TCAATTATGA AATTACACTG AGTATGTTAG TAATCATTGG TTCGAAGCAC 859 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCAGACC TCAATTATGA AATTACACTG AGTATGTTAG TAATCATTGG TTCGAAGCAC 266 CTTCATTGGT CTCAAGAACC CTATGGATGA AGATGTTCTC TTGTTCTCTT CCAACAACAA 919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCATTGGT CTCAAGAACC CTATGGATGA AGATGTTCTC TTGTTCTCTT CCAACAACAA 326 ACTCGACGAA CATGCCTCTT CATCCGGTAA TCGTATTTAA TCGTAACGTT AGAAAAATCA 979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCGACGAA CATGCCTCTT CATCCGGTAA TCGTATTTAA TCGTAACGTT AGAAAAATCA 386 CAATAATGAG ACGGATTCAA CATATAAACT GCAAACGCAC ATGCATGTAT TAATGTCCTC 1039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATAATGAG ACGGATTCAA CATATAAACT GCAAACGCAC ATGCATGTAT TAATGTCCTC 446 GGACTAGAGG TGACAATTGA ACGAACTGAA GTCAAACTTG ATGTCTAACA TGAAACTAAA 1099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACTAGAGG TGACAATTGA ACGAACTGAA GTCAAACTTG ATGTCTAACA TGAAACTAAA 506 CATCGATATT TGATACGAGT TCGTTCACCT AAAATTTGTT TGGATCAAAA TGAGTTCAAT 1159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCGATATT TGATACGAGT TCGTTCACCT AAAATTTGTT TGGATCAAAA TGAGTTCAAT 566 CCGAAGATAG ATCAAATACC AAATCACATC ACCTTCCTTT TCTATTTGAA GAAAAAGAAT 1219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAAGATAG ATCAAATACC AAATCACATC ACCTTCCTTT TCTATTTGAA GAAAAAGAAT 626 GTCAAATGCA TTCGACTCAA AAGTCTATCG AAAACAACCT CTCTAATAAT ATGTACATTT 1279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAAATGCA TTCGACTCAA AAGTCTATCG AAAACAACCT CTCTAATAAT ATGTACATTT 686 TACTATTCTC AAACATCACT CGTGAGACTA AACTTTCTAT ATTGTTATCG TCGATGTATA 1339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTATTCTC AAACATCACT CGTGAGACTA AACTTTCTAT ATTGTTATCG TCGATGTATA 746 GACGGAACTA CAAAATCTTA CTTACGCAT 1368 |||||||||| |||||||||| ||||||||| GACGGAACTA CAAAATCTTA CTTACGCAT 775 hqPGS_C10SLe0045H11.1+_SGN-E538396+ (620 1368) ******************************************************************************** EST sequence 16 -strand 647 n (File: SGN-E538405-) 1 GATAGACTTT TGAGTCGAAT GCATTTGACA TTCTTTTTCT TCAAATAGAA AAGGAAGGTG 61 ATGTGATTTG GTATTTGATC TATCTTCGGA TTGAACTCAT TTTGATCCAA ACAAATTTTA 121 GGTGAACGAA CTCGTATCAA ATATCGATGT TTAGTTTCAT GTTAGACATC AAGTTTGACT 181 TCAGTTCGTT CAATTGTCAC CTCTAGTCCG AGGACATTAA TACATGCATG TGCGTTTGCA 241 GTTTATATGT TGAATCCGTC TCATTATTGT GATTTTTCTA ACGTTACGAT TAAATACGAT 301 TACCGGATGA AGAGGCATGT TCGTCGAGTT TGTTGTTGGA AGAGAACAAG AGAACATCTT 361 CATCCATAGG GTTCTTGAGA CCAATGAAGG TGCTTCGAAC CAATGATTAC TAACATACTC 421 AGTGTAATTT CATAATTGAG GTCTGAAATT ATATCGTCGT TATTATGCAA AATCTTGTTT 481 CTCTACGATC GATCATTTGA CTACAAAGAG AAATACACAA ATAGAATTAT ACATTTTCCT 541 TTTCATGCTT CTTATTTTTT TTCTTCTTGA TTCTCTTTGT AATTTTACTT GGAAGAATTA 601 GTGAACCAAG ATCCATTCTT TTCTGGAAAA AAAGAAAAAA AAAAACT Predicted gene structure (within gDNA segment 1858 to 1): Exon 1 1248 625 ( 624 n); cDNA 1 624 ( 624 n); score: 1.000 PPA cDNA 627 645 MATCH C10SLe0045H11.1- SGN-E538405- 1.000 624 0.964 C PGS_C10SLe0045H11.1-_SGN-E538405- (1248 625) Alignment (genomic DNA sequence = upper lines): GATAGACTTT TGAGTCGAAT GCATTTGACA TTCTTTTTCT TCAAATAGAA AAGGAAGGTG 1189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAGACTTT TGAGTCGAAT GCATTTGACA TTCTTTTTCT TCAAATAGAA AAGGAAGGTG 60 ATGTGATTTG GTATTTGATC TATCTTCGGA TTGAACTCAT TTTGATCCAA ACAAATTTTA 1129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTGATTTG GTATTTGATC TATCTTCGGA TTGAACTCAT TTTGATCCAA ACAAATTTTA 120 GGTGAACGAA CTCGTATCAA ATATCGATGT TTAGTTTCAT GTTAGACATC AAGTTTGACT 1069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGAACGAA CTCGTATCAA ATATCGATGT TTAGTTTCAT GTTAGACATC AAGTTTGACT 180 TCAGTTCGTT CAATTGTCAC CTCTAGTCCG AGGACATTAA TACATGCATG TGCGTTTGCA 1009 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTTCGTT CAATTGTCAC CTCTAGTCCG AGGACATTAA TACATGCATG TGCGTTTGCA 240 GTTTATATGT TGAATCCGTC TCATTATTGT GATTTTTCTA ACGTTACGAT TAAATACGAT 949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTATATGT TGAATCCGTC TCATTATTGT GATTTTTCTA ACGTTACGAT TAAATACGAT 300 TACCGGATGA AGAGGCATGT TCGTCGAGTT TGTTGTTGGA AGAGAACAAG AGAACATCTT 889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCGGATGA AGAGGCATGT TCGTCGAGTT TGTTGTTGGA AGAGAACAAG AGAACATCTT 360 CATCCATAGG GTTCTTGAGA CCAATGAAGG TGCTTCGAAC CAATGATTAC TAACATACTC 829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCCATAGG GTTCTTGAGA CCAATGAAGG TGCTTCGAAC CAATGATTAC TAACATACTC 420 AGTGTAATTT CATAATTGAG GTCTGAAATT ATATCGTCGT TATTATGCAA AATCTTGTTT 769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTAATTT CATAATTGAG GTCTGAAATT ATATCGTCGT TATTATGCAA AATCTTGTTT 480 CTCTACGATC GATCATTTGA CTACAAAGAG AAATACACAA ATAGAATTAT ACATTTTCCT 709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTACGATC GATCATTTGA CTACAAAGAG AAATACACAA ATAGAATTAT ACATTTTCCT 540 TTTCATGCTT CTTATTTTTT TTCTTCTTGA TTCTCTTTGT AATTTTACTT GGAAGAATTA 649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCATGCTT CTTATTTTTT TTCTTCTTGA TTCTCTTTGT AATTTTACTT GGAAGAATTA 600 GTGAACCAAG ATCCATTCTT TTCT 625 |||||||||| |||||||||| |||| GTGAACCAAG ATCCATTCTT TTCT 624 hqPGS_C10SLe0045H11.1-_SGN-E538405- (1248 625) ******************************************************************************** EST sequence 13 -strand 592 n (File: SGN-E538371-) 1 TCTTTTTCTT CAAATAGAAA AGGAAGGTGA TGTGATTTGG TATTTGATCT ATCTTCGGAT 61 TGAACTCATT TTGATCCAAA CAAATTTTAG GTGAACGAAC TCGTATCAAA TATCGATGTT 121 TAGTTTCATG TTAGACATCA AGTTTGACTT CAGTTCGTTC AATTGTCACC TCTAGTCCGA 181 GGACATTAAT ACATGCATGT GCGTTTGCAG TTTATATGTT GAATCCGTCT CATTATTGTG 241 ATTTTTCTAA CGTTACGATT AAATACGATT ACCGGATGAA GAGGCATGTT CGTCGAGTTT 301 GTTGTTGGAA GAGAACAAGA GAACATCTTC ATCCATAGGG TTCTTGAGAC CAATGAAGGT 361 GCTTCGAACC AATGATTACT AACATACTCA GTGTAATTTC ATAATTGAGG TCTGAAATTA 421 TATCGTCGTT ATTATGCAAA ATCTTGTTTC TCTACGATCG ATCATTTGAC TACAAAGAGA 481 AATACACAAA TAGAATTATA CATTTTCCTT TTCATGCTTC TTATTTTTTT TCTTCTTGAT 541 TCTCTTTGTA ATTTTACTTG GAAGAATTAG TGAACCAAGA TCCATTCTTT TC Predicted gene structure (within gDNA segment 1827 to 26): Exon 1 1217 626 ( 592 n); cDNA 1 592 ( 592 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E538371- 1.000 592 1.000 C PGS_C10SLe0045H11.1-_SGN-E538371- (1217 626) Alignment (genomic DNA sequence = upper lines): TCTTTTTCTT CAAATAGAAA AGGAAGGTGA TGTGATTTGG TATTTGATCT ATCTTCGGAT 1158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTTTCTT CAAATAGAAA AGGAAGGTGA TGTGATTTGG TATTTGATCT ATCTTCGGAT 60 TGAACTCATT TTGATCCAAA CAAATTTTAG GTGAACGAAC TCGTATCAAA TATCGATGTT 1098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTCATT TTGATCCAAA CAAATTTTAG GTGAACGAAC TCGTATCAAA TATCGATGTT 120 TAGTTTCATG TTAGACATCA AGTTTGACTT CAGTTCGTTC AATTGTCACC TCTAGTCCGA 1038 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTTCATG TTAGACATCA AGTTTGACTT CAGTTCGTTC AATTGTCACC TCTAGTCCGA 180 GGACATTAAT ACATGCATGT GCGTTTGCAG TTTATATGTT GAATCCGTCT CATTATTGTG 978 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACATTAAT ACATGCATGT GCGTTTGCAG TTTATATGTT GAATCCGTCT CATTATTGTG 240 ATTTTTCTAA CGTTACGATT AAATACGATT ACCGGATGAA GAGGCATGTT CGTCGAGTTT 918 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTTCTAA CGTTACGATT AAATACGATT ACCGGATGAA GAGGCATGTT CGTCGAGTTT 300 GTTGTTGGAA GAGAACAAGA GAACATCTTC ATCCATAGGG TTCTTGAGAC CAATGAAGGT 858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTGGAA GAGAACAAGA GAACATCTTC ATCCATAGGG TTCTTGAGAC CAATGAAGGT 360 GCTTCGAACC AATGATTACT AACATACTCA GTGTAATTTC ATAATTGAGG TCTGAAATTA 798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTCGAACC AATGATTACT AACATACTCA GTGTAATTTC ATAATTGAGG TCTGAAATTA 420 TATCGTCGTT ATTATGCAAA ATCTTGTTTC TCTACGATCG ATCATTTGAC TACAAAGAGA 738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCGTCGTT ATTATGCAAA ATCTTGTTTC TCTACGATCG ATCATTTGAC TACAAAGAGA 480 AATACACAAA TAGAATTATA CATTTTCCTT TTCATGCTTC TTATTTTTTT TCTTCTTGAT 678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATACACAAA TAGAATTATA CATTTTCCTT TTCATGCTTC TTATTTTTTT TCTTCTTGAT 540 TCTCTTTGTA ATTTTACTTG GAAGAATTAG TGAACCAAGA TCCATTCTTT TC 626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TCTCTTTGTA ATTTTACTTG GAAGAATTAG TGAACCAAGA TCCATTCTTT TC 592 hqPGS_C10SLe0045H11.1-_SGN-E538371- (1217 626) ******************************************************************************** EST sequence 12 -strand 575 n (File: SGN-E538369-) 1 CAAATAGAAA AGGAAGGTGA TGTGATTTTG GTATTTGATC TATCTTCGGA TTGAACTCAT 61 TTTGATCCAA ACAAATTTTA GGTGAACGAA CTCGTATCAA ATATCGATGT TTAGTTTCAT 121 GTTAGACATC AAGTTTGACT TCAGTTCGTT CAATTGTCAC CTCTAGTCCG AGGACATTAA 181 TACATGCATG TGCGTTTGCA GTTTATATGT TGAATCCGTC TCATTATTGT GATTTTTCTA 241 ACGTTACGAT TAAATACGAT TACCGGATGA AGAGGCATGT TCGTCGAGTT TGTTGTTGGA 301 AGAGAACAAG AGAACATCTT CATCCATAGG GTTCTTGAGA CCAATGAAGG TGCTTCGAAC 361 CAATGATTAC TAACATACTC AGTGTAATTT CATAATTGAG GTCTGAAATT ATATCGTCGT 421 TATTATGCAA AATCTTGTTT CTCTACGATC GATCATTTGA CTACAAAGAG AAATACACAA 481 ATAGAATTAT ACATTTTCCT TTTCATGCTT CTTATTTTTT TTCTTCTTGA TTCTCTTTGT 541 AATTTTACTT GGAAGAATTA GTGAACCAAG ATCCA Predicted gene structure (within gDNA segment 1817 to 34): Exon 1 1207 634 ( 574 n); cDNA 1 575 ( 575 n); score: 0.996 MATCH C10SLe0045H11.1- SGN-E538369- 0.996 574 0.998 C PGS_C10SLe0045H11.1-_SGN-E538369- (1207 634) Alignment (genomic DNA sequence = upper lines): CAAATAGAAA AGGAAGGTGA TGTGA-TTTG GTATTTGATC TATCTTCGGA TTGAACTCAT 1149 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| CAAATAGAAA AGGAAGGTGA TGTGATTTTG GTATTTGATC TATCTTCGGA TTGAACTCAT 60 TTTGATCCAA ACAAATTTTA GGTGAACGAA CTCGTATCAA ATATCGATGT TTAGTTTCAT 1089 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATCCAA ACAAATTTTA GGTGAACGAA CTCGTATCAA ATATCGATGT TTAGTTTCAT 120 GTTAGACATC AAGTTTGACT TCAGTTCGTT CAATTGTCAC CTCTAGTCCG AGGACATTAA 1029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAGACATC AAGTTTGACT TCAGTTCGTT CAATTGTCAC CTCTAGTCCG AGGACATTAA 180 TACATGCATG TGCGTTTGCA GTTTATATGT TGAATCCGTC TCATTATTGT GATTTTTCTA 969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATGCATG TGCGTTTGCA GTTTATATGT TGAATCCGTC TCATTATTGT GATTTTTCTA 240 ACGTTACGAT TAAATACGAT TACCGGATGA AGAGGCATGT TCGTCGAGTT TGTTGTTGGA 909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTTACGAT TAAATACGAT TACCGGATGA AGAGGCATGT TCGTCGAGTT TGTTGTTGGA 300 AGAGAACAAG AGAACATCTT CATCCATAGG GTTCTTGAGA CCAATGAAGG TGCTTCGAAC 849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAACAAG AGAACATCTT CATCCATAGG GTTCTTGAGA CCAATGAAGG TGCTTCGAAC 360 CAATGATTAC TAACATACTC AGTGTAATTT CATAATTGAG GTCTGAAATT ATATCGTCGT 789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGATTAC TAACATACTC AGTGTAATTT CATAATTGAG GTCTGAAATT ATATCGTCGT 420 TATTATGCAA AATCTTGTTT CTCTACGATC GATCATTTGA CTACAAAGAG AAATACACAA 729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTATGCAA AATCTTGTTT CTCTACGATC GATCATTTGA CTACAAAGAG AAATACACAA 480 ATAGAATTAT ACATTTTCCT TTTCATGCTT CTTATTTTTT TTCTTCTTGA TTCTCTTTGT 669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGAATTAT ACATTTTCCT TTTCATGCTT CTTATTTTTT TTCTTCTTGA TTCTCTTTGT 540 AATTTTACTT GGAAGAATTA GTGAACCAAG ATCCA 634 |||||||||| |||||||||| |||||||||| ||||| AATTTTACTT GGAAGAATTA GTGAACCAAG ATCCA 575 hqPGS_C10SLe0045H11.1-_SGN-E538369- (1207 634) ******************************************************************************** EST sequence 64 -strand 809 n (File: SGN-E538325-) 1 TCATTGGTCT CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTCTCTTTCC AACAACAAAC 61 TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG AAAAATCACA 121 ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA ATGTCCTCGG 181 ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG AAACTAAACA 241 TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG AGTTCAATCC 301 GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA AAAAGAATGT 361 CAAATGCATT CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT GTACATTTTA 421 CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC GATGTATAGA 481 CGGAACTACA AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA AACTTCGTAT 541 TTATATTTTA AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA AATTCTAGCT 601 TTGTTCCGCT CTTTTAAATA CATAATTACC TCAAAATGTA GGCAATCACT TTCCCTTACT 661 CGCTTCCACG GAGATGAATT ATCAGCCGCC GTCGCGCCAC CGCCGTAATC TCCGATAGCT 721 GATAAATCTC CATAACTGCC GGAAGAACTC ACCGAACGCA CCGGCGACGG CGAGGGAGAG 781 AAATCACTCG ACGGAGAAGA AGATAAAGG Predicted gene structure (within gDNA segment 252 to 2270): Exon 1 862 1670 ( 809 n); cDNA 1 809 ( 809 n); score: 0.995 MATCH C10SLe0045H11.1+ SGN-E538325- 0.995 809 1.000 C PGS_C10SLe0045H11.1+_SGN-E538325- (862 1670) Alignment (genomic DNA sequence = upper lines): TCATTGGTCT CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC AACAACAAAC 921 |||||||||| |||||||||| |||||||||| |||||||||| || |||| |||||||||| TCATTGGTCT CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTCTCTTTCC AACAACAAAC 60 TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG AAAAATCACA 981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG AAAAATCACA 120 ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA ATGTCCTCGG 1041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA ATGTCCTCGG 180 ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG AAACTAAACA 1101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG AAACTAAACA 240 TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG AGTTCAATCC 1161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG AGTTCAATCC 300 GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA AAAAGAATGT 1221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA AAAAGAATGT 360 CAAATGCATT CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT GTACATTTTA 1281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGCATT CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT GTACATTTTA 420 CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC GATGTATAGA 1341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC GATGTATAGA 480 CGGAACTACA AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA AACTTCGTAT 1401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAACTACA AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA AACTTCGTAT 540 TTATATTTTA AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA AATTCTAGCT 1461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATATTTTA AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA AATTCTAGCT 600 TTGTTCCGCT CTTTTAAATA CATAATTACC TCAAAATGTA GGCAATCACT TTCCCTTACT 1521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTCCGCT CTTTTAAATA CATAATTACC TCAAAATGTA GGCAATCACT TTCCCTTACT 660 CGCTTCCACG GAGATGAATT ATCAGCCGCC GTCGCGCCAC CGCCGTAATC TCCGATAGCT 1581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTTCCACG GAGATGAATT ATCAGCCGCC GTCGCGCCAC CGCCGTAATC TCCGATAGCT 720 GATAAATCTC CATAACTGCC GGAAGAACTC ACCGAACGCA CCGGCGACGG CGAGGGAGAG 1641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAAATCTC CATAACTGCC GGAAGAACTC ACCGAACGCA CCGGCGACGG CGAGGGAGAG 780 AAATCACTCG ACGGAGAAGA AGATAAAGG 1670 |||||||||| |||||||||| ||||||||| AAATCACTCG ACGGAGAAGA AGATAAAGG 809 hqPGS_C10SLe0045H11.1+_SGN-E538325- (862 1670) ******************************************************************************** EST sequence 67 -strand 804 n (File: SGN-E538370-) 1 GTCTCAAAGA ACCCTATGGA TGAAGATGTT CTCTTGTCAT CTTCCAACAA CAAACTCGAC 61 GAACATGCCT CTTCATCCGG TAATCGTATT TAATCGTAAC GTTAGAAAAA TCACAATAAT 121 GAGACGGATT CAACATATAA ACTGCAAACG CACATGCATG TATTAATGTC CTCGGACTAG 181 AGGTGACAAT TGAACGAACT GAAGTCAAAC TTGATGTCTA ACATGAAACT AAACATCGAT 241 ATTTGATACG AGTTCGTTCA CCTAAAATTT GTTTGGATCA AAATGAGTTC AATCCGAAGA 301 TAGATCAAAT ACCAAATCAC ATCACCTTCC TTTTCTATTT GAAGAAAAAG AATGTCAAAT 361 GCATTCGACT CAAAAGTCTA TCGAAAACAA CCTCTCTAAT AATATGTACA TTTTACTATT 421 CTCAAACATC ACTCGTGAGA CTAAACTTTC TATATTGTTA TCGTCGATGT ATAGACGGAA 481 CTACAAAATC TTACTTACGC ATTCGACAAA ACTCAATAAC TCGTAAACTT CGTATTTATA 541 TTTTAAAATC AACTATCCCG TAAAAACTAT AATTTATAAA CTTAAAATTC TAGCTTTGTT 601 CCGCTCTTTT AAATACATAA TTACCTCAAA ATGTAGGCAA TCACTTTCCC TTACTCGCTT 661 CCACGGAGAT GAATTATCAG CCGCCGTCGC GCCACCGCCG TAATCTCCGA TAGCTGATAA 721 ATCTCCATAA CTGCCGGAAG AACTCACCGA ACGCACCGGC GACGGCGAGG GAGAGAAATC 781 ACTCGACGGA GAAGAAGATA AAGG Predicted gene structure (within gDNA segment 203 to 2270): Exon 1 868 1670 ( 803 n); cDNA 1 804 ( 804 n); score: 0.994 MATCH C10SLe0045H11.1+ SGN-E538370- 0.994 803 0.999 C PGS_C10SLe0045H11.1+_SGN-E538370- (868 1670) Alignment (genomic DNA sequence = upper lines): GTCTC-AAGA ACCCTATGGA TGAAGATGTT CTCTTGTTCT CTTCCAACAA CAAACTCGAC 926 ||||| |||| |||||||||| |||||||||| ||||||| | |||||||||| |||||||||| GTCTCAAAGA ACCCTATGGA TGAAGATGTT CTCTTGTCAT CTTCCAACAA CAAACTCGAC 60 GAACATGCCT CTTCATCCGG TAATCGTATT TAATCGTAAC GTTAGAAAAA TCACAATAAT 986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACATGCCT CTTCATCCGG TAATCGTATT TAATCGTAAC GTTAGAAAAA TCACAATAAT 120 GAGACGGATT CAACATATAA ACTGCAAACG CACATGCATG TATTAATGTC CTCGGACTAG 1046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGACGGATT CAACATATAA ACTGCAAACG CACATGCATG TATTAATGTC CTCGGACTAG 180 AGGTGACAAT TGAACGAACT GAAGTCAAAC TTGATGTCTA ACATGAAACT AAACATCGAT 1106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGACAAT TGAACGAACT GAAGTCAAAC TTGATGTCTA ACATGAAACT AAACATCGAT 240 ATTTGATACG AGTTCGTTCA CCTAAAATTT GTTTGGATCA AAATGAGTTC AATCCGAAGA 1166 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGATACG AGTTCGTTCA CCTAAAATTT GTTTGGATCA AAATGAGTTC AATCCGAAGA 300 TAGATCAAAT ACCAAATCAC ATCACCTTCC TTTTCTATTT GAAGAAAAAG AATGTCAAAT 1226 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATCAAAT ACCAAATCAC ATCACCTTCC TTTTCTATTT GAAGAAAAAG AATGTCAAAT 360 GCATTCGACT CAAAAGTCTA TCGAAAACAA CCTCTCTAAT AATATGTACA TTTTACTATT 1286 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATTCGACT CAAAAGTCTA TCGAAAACAA CCTCTCTAAT AATATGTACA TTTTACTATT 420 CTCAAACATC ACTCGTGAGA CTAAACTTTC TATATTGTTA TCGTCGATGT ATAGACGGAA 1346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAACATC ACTCGTGAGA CTAAACTTTC TATATTGTTA TCGTCGATGT ATAGACGGAA 480 CTACAAAATC TTACTTACGC ATTCGACAAA ACTCAATAAC TCGTAAACTT CGTATTTATA 1406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACAAAATC TTACTTACGC ATTCGACAAA ACTCAATAAC TCGTAAACTT CGTATTTATA 540 TTTTAAAATC AACTATCCCG TAAAAACTAT AATTTATAAA CTTAAAATTC TAGCTTTGTT 1466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAAAATC AACTATCCCG TAAAAACTAT AATTTATAAA CTTAAAATTC TAGCTTTGTT 600 CCGCTCTTTT AAATACATAA TTACCTCAAA ATGTAGGCAA TCACTTTCCC TTACTCGCTT 1526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCTCTTTT AAATACATAA TTACCTCAAA ATGTAGGCAA TCACTTTCCC TTACTCGCTT 660 CCACGGAGAT GAATTATCAG CCGCCGTCGC GCCACCGCCG TAATCTCCGA TAGCTGATAA 1586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACGGAGAT GAATTATCAG CCGCCGTCGC GCCACCGCCG TAATCTCCGA TAGCTGATAA 720 ATCTCCATAA CTGCCGGAAG AACTCACCGA ACGCACCGGC GACGGCGAGG GAGAGAAATC 1646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCCATAA CTGCCGGAAG AACTCACCGA ACGCACCGGC GACGGCGAGG GAGAGAAATC 780 ACTCGACGGA GAAGAAGATA AAGG 1670 |||||||||| |||||||||| |||| ACTCGACGGA GAAGAAGATA AAGG 804 hqPGS_C10SLe0045H11.1+_SGN-E538370- (868 1670) ******************************************************************************** EST sequence 66 -strand 799 n (File: SGN-E538367-) 1 CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC AGCAACAAAC TCGACGAACA 61 TGCTACTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG AGAAATCACA ATAATGAGAC 121 GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA ATGTCCTCGG ACTAGAGGTG 181 ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG AAACTAAACA TCGATATTTG 241 ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG AGTTCAATCC GAAGATAGAT 301 CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA AAAAGAATGT CAAATGCATT 361 CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT GTACATTTTA CTATTCTCAA 421 ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC GATGTATAGA CGGAACTACA 481 AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA AACTTCGTAT TTATATTTTA 541 AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA AATTCTAGCT TTGTTCCGCT 601 CTTTTAAATA CATAATTACC TCAAAATGTA GGCAATCACT TTCCCTTACT CGCTTCCACG 661 GAGATGAATT ATCAGCCGCC GTCGCGCCAC CGCCGTAATC TCCGATAGCT GATAAATCTC 721 CATAACTGCC GGAAGAACTC ACCGAACGCA CCGGCGACGG CGAGGGAGAG AAATCACTCG 781 ACGGAGAAGA AGATAAAGG Predicted gene structure (within gDNA segment 262 to 2270): Exon 1 872 1670 ( 799 n); cDNA 1 799 ( 799 n); score: 0.995 MATCH C10SLe0045H11.1+ SGN-E538367- 0.995 799 1.000 C PGS_C10SLe0045H11.1+_SGN-E538367- (872 1670) Alignment (genomic DNA sequence = upper lines): CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC AACAACAAAC TCGACGAACA 931 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC AGCAACAAAC TCGACGAACA 60 TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG AAAAATCACA ATAATGAGAC 991 ||| ||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| TGCTACTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG AGAAATCACA ATAATGAGAC 120 GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA ATGTCCTCGG ACTAGAGGTG 1051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA ATGTCCTCGG ACTAGAGGTG 180 ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG AAACTAAACA TCGATATTTG 1111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG AAACTAAACA TCGATATTTG 240 ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG AGTTCAATCC GAAGATAGAT 1171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG AGTTCAATCC GAAGATAGAT 300 CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA AAAAGAATGT CAAATGCATT 1231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA AAAAGAATGT CAAATGCATT 360 CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT GTACATTTTA CTATTCTCAA 1291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT GTACATTTTA CTATTCTCAA 420 ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC GATGTATAGA CGGAACTACA 1351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC GATGTATAGA CGGAACTACA 480 AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA AACTTCGTAT TTATATTTTA 1411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA AACTTCGTAT TTATATTTTA 540 AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA AATTCTAGCT TTGTTCCGCT 1471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA AATTCTAGCT TTGTTCCGCT 600 CTTTTAAATA CATAATTACC TCAAAATGTA GGCAATCACT TTCCCTTACT CGCTTCCACG 1531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTAAATA CATAATTACC TCAAAATGTA GGCAATCACT TTCCCTTACT CGCTTCCACG 660 GAGATGAATT ATCAGCCGCC GTCGCGCCAC CGCCGTAATC TCCGATAGCT GATAAATCTC 1591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATGAATT ATCAGCCGCC GTCGCGCCAC CGCCGTAATC TCCGATAGCT GATAAATCTC 720 CATAACTGCC GGAAGAACTC ACCGAACGCA CCGGCGACGG CGAGGGAGAG AAATCACTCG 1651 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAACTGCC GGAAGAACTC ACCGAACGCA CCGGCGACGG CGAGGGAGAG AAATCACTCG 780 ACGGAGAAGA AGATAAAGG 1670 |||||||||| ||||||||| ACGGAGAAGA AGATAAAGG 799 hqPGS_C10SLe0045H11.1+_SGN-E538367- (872 1670) ******************************************************************************** EST sequence 70 -strand 797 n (File: SGN-E548050-) 1 CAAGAACCCT ATGGATGAGA TGTTCTCTTG TCTCTTCCAA CAACAAACTC GACGAACATG 61 CCTCTTCATC CGGTAATCGT ATTTAATCGT AACGTTAGAA AAATCACAAT AATGAGACGG 121 ATTCAACATA TAAACTGCAA ACGCACATGC ATGTATTAAT GTCCTCGGAC TAGAGGTGAC 181 AATTGAACGA ACTGAAGTCA AACTTGATGT CTAACATGAA ACTAAACATC GATATTTGAT 241 ACGAGTTCGT TCACCTAAAA TTTGTTTGGA TCAAAATGAG TTCAATCCGA AGATAGATCA 301 AATACCAAAT CACATCACCT TCCTTTTCTA TTTGAAGAAA AAGAATGTCA AATGCATTCG 361 ACTCAAAAGT CTATCGAAAA CAACCTCTCT AATAATATGT ACATTTTACT ATTCTCAAAC 421 ATCACTCGTG AGACTAAACT TTCTATATTG TTATCGTCGA TGTATAGACG GAACTACAAA 481 ATCTTACTTA CGCATTCGAC AAAACTCAAT AACTCGTAAA CTTCGTATTT ATATTTTAAA 541 ATCAACTATC CCGTAAAAAC TATAATTTAT AAACTTAAAA TTCTAGCTTT GTTCCGCTCT 601 TTTAAATACA TAATTACCTC AAAATGTAGG CAATCACTTT CCCTTACTCG CTTCCACGGA 661 GATGAATTAT CAGCCGCCGT CGCGCCACCG CCGTAATCTC CGATAGCTGA TAAATCTCCA 721 TAACTGCCGG AAGAACTCAC CGAACGCACC GGCGACGGCG AGGGAGAGAA ATCACTCGAC 781 GGAGAAGAAG ATAAAGG Predicted gene structure (within gDNA segment 262 to 2270): Exon 1 872 1670 ( 799 n); cDNA 1 797 ( 797 n); score: 0.997 MATCH C10SLe0045H11.1+ SGN-E548050- 0.997 799 1.003 C PGS_C10SLe0045H11.1+_SGN-E548050- (872 1670) Alignment (genomic DNA sequence = upper lines): CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC AACAACAAAC TCGACGAACA 931 |||||||||| ||||||| || |||||||||| | |||||||| |||||||||| |||||||||| CAAGAACCCT ATGGATG-AG ATGTTCTCTT G-TCTCTTCC AACAACAAAC TCGACGAACA 58 TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG AAAAATCACA ATAATGAGAC 991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG AAAAATCACA ATAATGAGAC 118 GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA ATGTCCTCGG ACTAGAGGTG 1051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA ATGTCCTCGG ACTAGAGGTG 178 ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG AAACTAAACA TCGATATTTG 1111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG AAACTAAACA TCGATATTTG 238 ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG AGTTCAATCC GAAGATAGAT 1171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG AGTTCAATCC GAAGATAGAT 298 CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA AAAAGAATGT CAAATGCATT 1231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA AAAAGAATGT CAAATGCATT 358 CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT GTACATTTTA CTATTCTCAA 1291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT GTACATTTTA CTATTCTCAA 418 ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC GATGTATAGA CGGAACTACA 1351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC GATGTATAGA CGGAACTACA 478 AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA AACTTCGTAT TTATATTTTA 1411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA AACTTCGTAT TTATATTTTA 538 AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA AATTCTAGCT TTGTTCCGCT 1471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA AATTCTAGCT TTGTTCCGCT 598 CTTTTAAATA CATAATTACC TCAAAATGTA GGCAATCACT TTCCCTTACT CGCTTCCACG 1531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTAAATA CATAATTACC TCAAAATGTA GGCAATCACT TTCCCTTACT CGCTTCCACG 658 GAGATGAATT ATCAGCCGCC GTCGCGCCAC CGCCGTAATC TCCGATAGCT GATAAATCTC 1591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATGAATT ATCAGCCGCC GTCGCGCCAC CGCCGTAATC TCCGATAGCT GATAAATCTC 718 CATAACTGCC GGAAGAACTC ACCGAACGCA CCGGCGACGG CGAGGGAGAG AAATCACTCG 1651 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAACTGCC GGAAGAACTC ACCGAACGCA CCGGCGACGG CGAGGGAGAG AAATCACTCG 778 ACGGAGAAGA AGATAAAGG 1670 |||||||||| ||||||||| ACGGAGAAGA AGATAAAGG 797 hqPGS_C10SLe0045H11.1+_SGN-E548050- (872 1670) ******************************************************************************** EST sequence 72 -strand 798 n (File: SGN-E538414-) 1 CAAGAACCAT ATGGAAGAAG ATGTTCCTTG TTCTCTTCCA ACAACAAACT CGACGAACAT 61 GCCTCTTCAT CCGGTAATCG TATTTAATCG TACCGTTAGA AAAATCACAA TAATGAGACG 121 GATTCAACAT ATAAACTGCA AACGCACATG CATGTATTAA TGTCCTCGGA CTAGAGGTGA 181 CAATTGAACG AACTGAAGTC AAACTTGATG TCTAACATGA AACTAAACAT CGATATTTGA 241 TACGAGTTCG TTCACCTAAA ATTTGTTTGG ATCAAAATGA GTTCAATCCG AAGATAGATC 301 AAATACCAAA TCACATCACC TTCCTTTTCT ATTTGAAGAA AAAGAATGTC AAATGCATTC 361 GACTCAAAAG TCTATCGAAA ACAACCTCTC TAATAATATG TACATTTTAC TATTCTCAAA 421 CATCACTCGT GAGACTAAAC TTTCTATATT GTTATCGTCG ATGTATAGAC GGAACTACAA 481 AATCTTACTT ACGCATTCGA CAAAACTCAA TAACTCGTAA ACTTCGTATT TATATTTTAA 541 AATCAACTAT CCCGTAAAAA CTATAATTTA TAAACTTAAA ATTCTAGCTT TGTTCCGCTC 601 TTTTAAATAC ATAATTACCT CAAAATGTAG GCAATCACTT TCCCTTACTC GCTTCCACGG 661 AGATGAATTA TCAGCCGCCG TCGCGCCACC GCCGTAATCT CCGATAGCTG ATAAATCTCC 721 ATAACTGCCG GAAGAACTCA CCGAACGCAC CGGCGACGGC GAGGGAGAGA AATCACTCGA 781 CGGAGAAGAA GATAAAGG Predicted gene structure (within gDNA segment 29 to 2270): Exon 1 872 1670 ( 799 n); cDNA 1 798 ( 798 n); score: 0.995 MATCH C10SLe0045H11.1+ SGN-E538414- 0.995 799 1.001 C PGS_C10SLe0045H11.1+_SGN-E538414- (872 1670) Alignment (genomic DNA sequence = upper lines): CAAGAACCCT ATGGATGAAG ATGTTCTCTT GTTCTCTTCC AACAACAAAC TCGACGAACA 931 |||||||| | ||||| |||| |||||| ||| |||||||||| |||||||||| |||||||||| CAAGAACCAT ATGGAAGAAG ATGTTC-CTT GTTCTCTTCC AACAACAAAC TCGACGAACA 59 TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG AAAAATCACA ATAATGAGAC 991 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TGCCTCTTCA TCCGGTAATC GTATTTAATC GTACCGTTAG AAAAATCACA ATAATGAGAC 119 GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA ATGTCCTCGG ACTAGAGGTG 1051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA ATGTCCTCGG ACTAGAGGTG 179 ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG AAACTAAACA TCGATATTTG 1111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG AAACTAAACA TCGATATTTG 239 ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG AGTTCAATCC GAAGATAGAT 1171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG AGTTCAATCC GAAGATAGAT 299 CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA AAAAGAATGT CAAATGCATT 1231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA AAAAGAATGT CAAATGCATT 359 CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT GTACATTTTA CTATTCTCAA 1291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT GTACATTTTA CTATTCTCAA 419 ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC GATGTATAGA CGGAACTACA 1351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC GATGTATAGA CGGAACTACA 479 AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA AACTTCGTAT TTATATTTTA 1411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA AACTTCGTAT TTATATTTTA 539 AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA AATTCTAGCT TTGTTCCGCT 1471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA AATTCTAGCT TTGTTCCGCT 599 CTTTTAAATA CATAATTACC TCAAAATGTA GGCAATCACT TTCCCTTACT CGCTTCCACG 1531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTAAATA CATAATTACC TCAAAATGTA GGCAATCACT TTCCCTTACT CGCTTCCACG 659 GAGATGAATT ATCAGCCGCC GTCGCGCCAC CGCCGTAATC TCCGATAGCT GATAAATCTC 1591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATGAATT ATCAGCCGCC GTCGCGCCAC CGCCGTAATC TCCGATAGCT GATAAATCTC 719 CATAACTGCC GGAAGAACTC ACCGAACGCA CCGGCGACGG CGAGGGAGAG AAATCACTCG 1651 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAACTGCC GGAAGAACTC ACCGAACGCA CCGGCGACGG CGAGGGAGAG AAATCACTCG 779 ACGGAGAAGA AGATAAAGG 1670 |||||||||| ||||||||| ACGGAGAAGA AGATAAAGG 798 hqPGS_C10SLe0045H11.1+_SGN-E538414- (872 1670) ******************************************************************************** EST sequence 71 -strand 792 n (File: SGN-E538407-) 1 CCCTACGGAT GAAGATGTCT CTTGTTCTCT CCCAACAACA AACTCGACGA ACATGCCTCT 61 TCATCCGGTA ATCGTATTTA ATCGTAACGT TAGAAAAATC ACAATAATGA GACGGATTCA 121 ACATATAAAC TGCAAACGCA CATGCATGTA TTAATGTCCT CGGACTAGAG GTGACAATTG 181 AACGAACTGA AGTCAAACTT GATGTCTAAC ATGAAACTAA ACATCGATAT TTGATACGAG 241 TTCGTTCACC TAAAATTTGT TTGGATCAAA ATGAGTTCAA TCCGAAGATA GATCAAATAC 301 CAAATCACAT CACCTTCCTT TTCTATTTGA AGAAAAAGAA TGTCAAATGC ATTCGACTCA 361 AAAGTCTATC GAAAACAACC TCTCTAATAA TATGTACATT TTACTATTCT CAAACATCAC 421 TCGTGAGACT AAACTTTCTA TATTGTTATC GTCGATGTAT AGACGGAACT ACAAAATCTT 481 ACTTACGCAT TCGACAAAAC TCAATAACTC GTAAACTTCG TATTTATATT TTAAAATCAA 541 CTATCCCGTA AAAACTATAA TTTATAAACT TAAAATTCTA GCTTTGTTCC GCTCTTTTAA 601 ATACATAATT ACCTCAAAAT GTAGGCAATC ACTTTCCCTT ACTCGCTTCC ACGGAGATGA 661 ATTATCAGCC GCCGTCGCGC CACCGCCGTA ATCTCCGATA GCTGATAAAT CTCCATAACT 721 GCCGGAAGAA CTCACCGAAC GCACCGGCGA CGGCGAGGGA GAGAAATCAC TCGACGGAGA 781 AGAAGATAAA GG Predicted gene structure (within gDNA segment 1 to 2270): Exon 1 878 1670 ( 793 n); cDNA 1 792 ( 792 n); score: 0.996 MATCH C10SLe0045H11.1+ SGN-E538407- 0.996 793 1.001 C PGS_C10SLe0045H11.1+_SGN-E538407- (878 1670) Alignment (genomic DNA sequence = upper lines): CCCTATGGAT GAAGATGTTC TCTTGTTCTC TTCCAACAAC AAACTCGACG AACATGCCTC 937 ||||| |||| ||||||| || |||||||||| | |||||||| |||||||||| |||||||||| CCCTACGGAT GAAGATG-TC TCTTGTTCTC TCCCAACAAC AAACTCGACG AACATGCCTC 59 TTCATCCGGT AATCGTATTT AATCGTAACG TTAGAAAAAT CACAATAATG AGACGGATTC 997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATCCGGT AATCGTATTT AATCGTAACG TTAGAAAAAT CACAATAATG AGACGGATTC 119 AACATATAAA CTGCAAACGC ACATGCATGT ATTAATGTCC TCGGACTAGA GGTGACAATT 1057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATATAAA CTGCAAACGC ACATGCATGT ATTAATGTCC TCGGACTAGA GGTGACAATT 179 GAACGAACTG AAGTCAAACT TGATGTCTAA CATGAAACTA AACATCGATA TTTGATACGA 1117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACGAACTG AAGTCAAACT TGATGTCTAA CATGAAACTA AACATCGATA TTTGATACGA 239 GTTCGTTCAC CTAAAATTTG TTTGGATCAA AATGAGTTCA ATCCGAAGAT AGATCAAATA 1177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGTTCAC CTAAAATTTG TTTGGATCAA AATGAGTTCA ATCCGAAGAT AGATCAAATA 299 CCAAATCACA TCACCTTCCT TTTCTATTTG AAGAAAAAGA ATGTCAAATG CATTCGACTC 1237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAATCACA TCACCTTCCT TTTCTATTTG AAGAAAAAGA ATGTCAAATG CATTCGACTC 359 AAAAGTCTAT CGAAAACAAC CTCTCTAATA ATATGTACAT TTTACTATTC TCAAACATCA 1297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGTCTAT CGAAAACAAC CTCTCTAATA ATATGTACAT TTTACTATTC TCAAACATCA 419 CTCGTGAGAC TAAACTTTCT ATATTGTTAT CGTCGATGTA TAGACGGAAC TACAAAATCT 1357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGTGAGAC TAAACTTTCT ATATTGTTAT CGTCGATGTA TAGACGGAAC TACAAAATCT 479 TACTTACGCA TTCGACAAAA CTCAATAACT CGTAAACTTC GTATTTATAT TTTAAAATCA 1417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTACGCA TTCGACAAAA CTCAATAACT CGTAAACTTC GTATTTATAT TTTAAAATCA 539 ACTATCCCGT AAAAACTATA ATTTATAAAC TTAAAATTCT AGCTTTGTTC CGCTCTTTTA 1477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTATCCCGT AAAAACTATA ATTTATAAAC TTAAAATTCT AGCTTTGTTC CGCTCTTTTA 599 AATACATAAT TACCTCAAAA TGTAGGCAAT CACTTTCCCT TACTCGCTTC CACGGAGATG 1537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATACATAAT TACCTCAAAA TGTAGGCAAT CACTTTCCCT TACTCGCTTC CACGGAGATG 659 AATTATCAGC CGCCGTCGCG CCACCGCCGT AATCTCCGAT AGCTGATAAA TCTCCATAAC 1597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATCAGC CGCCGTCGCG CCACCGCCGT AATCTCCGAT AGCTGATAAA TCTCCATAAC 719 TGCCGGAAGA ACTCACCGAA CGCACCGGCG ACGGCGAGGG AGAGAAATCA CTCGACGGAG 1657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCGGAAGA ACTCACCGAA CGCACCGGCG ACGGCGAGGG AGAGAAATCA CTCGACGGAG 779 AAGAAGATAA AGG 1670 |||||||||| ||| AAGAAGATAA AGG 792 hqPGS_C10SLe0045H11.1+_SGN-E538407- (878 1670) ******************************************************************************** EST sequence 65 -strand 786 n (File: SGN-E548044-) 1 GGATGAAGAT GTCTCTTGTC TCTTCCAACA ACAAACTCGA CGAACATGCC TCTTCATCCG 61 GTAATCGTAT TTAATCGTAA CGTTAGAAAA ATCACAATAA TGAGACGGAT TCAACATATA 121 AACTGCAAAC GCACATGCAT GTATTAATGT CCTCGGACTA GAGGTGACAA TTGAACGAAC 181 TGAAGTCAAA CTTGATGTCT AACATGAAAC TAAACATCGA TATTTGATAC GAGTTCGTTC 241 ACCTAAAATT TGTTTGGATC AAAATGAGTT CAATCCGAAG ATAGATCAAA TACCAAATNC 301 ACATCACCTT CCTTTTCTAT TTGAAGAAAA AGAATGTCAA ATGCATTCGA CTCAAAAGTC 361 TATCGAAAAC AACCTCTCTA ATAATATGTA CATTTTACTA TTCTCAAACA TCACTCGTGA 421 GACTAAACTT TCTATATTGT TATCGTCGAT GTATAGACGG AACTACAAAA TCTTACTTAC 481 GCATTCGACA AAACTCAATA ACTCGTAAAC TTCGTATTTA TATTTTAAAA TCAACTATCC 541 CGTAAAAACT ATAATTTATA AACTTAAAAT TCTAGCTTTG TTCCGCTCTT TTAAATACAT 601 AATTACCTCA AAATGTAGGC AATCACTTTC CCTTACTCGC TTCCACGGAG ATGAATTATC 661 AGCCGCCGTC GCGCCACCGC CGTAATCTCC GATAGCTGAT AAATCTCCAT AACTGCCGGA 721 AGAACTCACC GAACGCACCG GCGACGGCGA GGGAGAGAAA TCACTCGACG GAGAAGAAGA 781 TAAAGG Predicted gene structure (within gDNA segment 114 to 2270): Exon 1 884 1670 ( 787 n); cDNA 1 786 ( 786 n); score: 0.994 MATCH C10SLe0045H11.1+ SGN-E548044- 0.994 787 1.001 C PGS_C10SLe0045H11.1+_SGN-E548044- (884 1670) Alignment (genomic DNA sequence = upper lines): GGATGAAGAT GTTCTCTTGT TCTCTTCCAA CAACAAACTC GACGAACATG CCTCTTCATC 943 |||||||||| | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGAAGAT G-TCTCTTG- TCTCTTCCAA CAACAAACTC GACGAACATG CCTCTTCATC 58 CGGTAATCGT ATTTAATCGT AACGTTAGAA AAATCACAAT AATGAGACGG ATTCAACATA 1003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTAATCGT ATTTAATCGT AACGTTAGAA AAATCACAAT AATGAGACGG ATTCAACATA 118 TAAACTGCAA ACGCACATGC ATGTATTAAT GTCCTCGGAC TAGAGGTGAC AATTGAACGA 1063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACTGCAA ACGCACATGC ATGTATTAAT GTCCTCGGAC TAGAGGTGAC AATTGAACGA 178 ACTGAAGTCA AACTTGATGT CTAACATGAA ACTAAACATC GATATTTGAT ACGAGTTCGT 1123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGAAGTCA AACTTGATGT CTAACATGAA ACTAAACATC GATATTTGAT ACGAGTTCGT 238 TCACCTAAAA TTTGTTTGGA TCAAAATGAG TTCAATCCGA AGATAGATCA AATACCAAAT 1183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCTAAAA TTTGTTTGGA TCAAAATGAG TTCAATCCGA AGATAGATCA AATACCAAAT 298 -CACATCACC TTCCTTTTCT ATTTGAAGAA AAAGAATGTC AAATGCATTC GACTCAAAAG 1242 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| NCACATCACC TTCCTTTTCT ATTTGAAGAA AAAGAATGTC AAATGCATTC GACTCAAAAG 358 TCTATCGAAA ACAACCTCTC TAATAATATG TACATTTTAC TATTCTCAAA CATCACTCGT 1302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTATCGAAA ACAACCTCTC TAATAATATG TACATTTTAC TATTCTCAAA CATCACTCGT 418 GAGACTAAAC TTTCTATATT GTTATCGTCG ATGTATAGAC GGAACTACAA AATCTTACTT 1362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGACTAAAC TTTCTATATT GTTATCGTCG ATGTATAGAC GGAACTACAA AATCTTACTT 478 ACGCATTCGA CAAAACTCAA TAACTCGTAA ACTTCGTATT TATATTTTAA AATCAACTAT 1422 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCATTCGA CAAAACTCAA TAACTCGTAA ACTTCGTATT TATATTTTAA AATCAACTAT 538 CCCGTAAAAA CTATAATTTA TAAACTTAAA ATTCTAGCTT TGTTCCGCTC TTTTAAATAC 1482 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCGTAAAAA CTATAATTTA TAAACTTAAA ATTCTAGCTT TGTTCCGCTC TTTTAAATAC 598 ATAATTACCT CAAAATGTAG GCAATCACTT TCCCTTACTC GCTTCCACGG AGATGAATTA 1542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATTACCT CAAAATGTAG GCAATCACTT TCCCTTACTC GCTTCCACGG AGATGAATTA 658 TCAGCCGCCG TCGCGCCACC GCCGTAATCT CCGATAGCTG ATAAATCTCC ATAACTGCCG 1602 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCCGCCG TCGCGCCACC GCCGTAATCT CCGATAGCTG ATAAATCTCC ATAACTGCCG 718 GAAGAACTCA CCGAACGCAC CGGCGACGGC GAGGGAGAGA AATCACTCGA CGGAGAAGAA 1662 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAACTCA CCGAACGCAC CGGCGACGGC GAGGGAGAGA AATCACTCGA CGGAGAAGAA 778 GATAAAGG 1670 |||||||| GATAAAGG 786 hqPGS_C10SLe0045H11.1+_SGN-E548044- (884 1670) ******************************************************************************** EST sequence 63 -strand 764 n (File: SGN-E538295-) 1 TCCAACAACA AACTCGACGA ACATGCTCTT TCATCCGGTA ATCGTATTTA ATCGTAACGT 61 TAGAAAAATC ACAATAATGA GACGGATTCA ACATATAAAC TGCAAACGCA CATGCATGTA 121 TTAATGTCCT CGGACTAGAG GTGACAATTG AACGAACTGA AGTCAAACTT GATGTCTAAC 181 ATGAAACTAA ACATCGATAT TTGATACGAG TTCGTTCACC TAAAATTTGT TTGGATCAAA 241 ATGAGTTCAA TCCGAAGATA GATCAAATAC CCAAATCACA TCACCTTCCT TTTCTATTTG 301 AAGAAAAAGA ATGTCAAATG CATTCGACTC AAAAGTCTAT CGAAAACAAC CTCTNCTAAT 361 AATATGTACA TTTTACTATT CTCAAACATC ACTCGTGAGA CTAAACTTTC TATATTGTTA 421 TCGTCGATGT ATAGACGGAA CTACAAAATC TTACTTACGC ATTCGACAAA ACTCAATAAC 481 TCGTAAACTT CGTATTTATA TTTTAAAATC AACTATCCCG TAAAAACTAT AATTTATAAA 541 CTTAAAATTC TAGCTTTGTT CCGCTCTTTT AAATACATAA TTACCTCAAA ATGTAGGCAA 601 TCACTTTCCC TTACTCGCTT CCACGGAGAT GAATTATCAG CCGCCGTCGC GCCACCGCCG 661 TAATCTCCGA TAGCTGATAA ATCTCCATAA CTGCCGGAAG AACTCACCGA ACGCACCGGC 721 GACGGCGAGG GAGAGAAATC ACTCGACGGA GAAGAAGATA AAGG Predicted gene structure (within gDNA segment 299 to 2270): Exon 1 909 1670 ( 762 n); cDNA 1 764 ( 764 n); score: 0.990 MATCH C10SLe0045H11.1+ SGN-E538295- 0.990 762 0.997 C PGS_C10SLe0045H11.1+_SGN-E538295- (909 1670) Alignment (genomic DNA sequence = upper lines): TCCAACAACA AACTCGACGA ACATGCCTCT TCATCCGGTA ATCGTATTTA ATCGTAACGT 968 |||||||||| |||||||||| |||||| | |||||||||| |||||||||| |||||||||| TCCAACAACA AACTCGACGA ACATGCTCTT TCATCCGGTA ATCGTATTTA ATCGTAACGT 60 TAGAAAAATC ACAATAATGA GACGGATTCA ACATATAAAC TGCAAACGCA CATGCATGTA 1028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAAAATC ACAATAATGA GACGGATTCA ACATATAAAC TGCAAACGCA CATGCATGTA 120 TTAATGTCCT CGGACTAGAG GTGACAATTG AACGAACTGA AGTCAAACTT GATGTCTAAC 1088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATGTCCT CGGACTAGAG GTGACAATTG AACGAACTGA AGTCAAACTT GATGTCTAAC 180 ATGAAACTAA ACATCGATAT TTGATACGAG TTCGTTCACC TAAAATTTGT TTGGATCAAA 1148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAACTAA ACATCGATAT TTGATACGAG TTCGTTCACC TAAAATTTGT TTGGATCAAA 240 ATGAGTTCAA TCCGAAGATA GATCAAATA- CCAAATCACA TCACCTTCCT TTTCTATTTG 1207 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ATGAGTTCAA TCCGAAGATA GATCAAATAC CCAAATCACA TCACCTTCCT TTTCTATTTG 300 AAGAAAAAGA ATGTCAAATG CATTCGACTC AAAAGTCTAT CGAAAACAAC CTCT-CTAAT 1266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AAGAAAAAGA ATGTCAAATG CATTCGACTC AAAAGTCTAT CGAAAACAAC CTCTNCTAAT 360 AATATGTACA TTTTACTATT CTCAAACATC ACTCGTGAGA CTAAACTTTC TATATTGTTA 1326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGTACA TTTTACTATT CTCAAACATC ACTCGTGAGA CTAAACTTTC TATATTGTTA 420 TCGTCGATGT ATAGACGGAA CTACAAAATC TTACTTACGC ATTCGACAAA ACTCAATAAC 1386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTCGATGT ATAGACGGAA CTACAAAATC TTACTTACGC ATTCGACAAA ACTCAATAAC 480 TCGTAAACTT CGTATTTATA TTTTAAAATC AACTATCCCG TAAAAACTAT AATTTATAAA 1446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTAAACTT CGTATTTATA TTTTAAAATC AACTATCCCG TAAAAACTAT AATTTATAAA 540 CTTAAAATTC TAGCTTTGTT CCGCTCTTTT AAATACATAA TTACCTCAAA ATGTAGGCAA 1506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAAAATTC TAGCTTTGTT CCGCTCTTTT AAATACATAA TTACCTCAAA ATGTAGGCAA 600 TCACTTTCCC TTACTCGCTT CCACGGAGAT GAATTATCAG CCGCCGTCGC GCCACCGCCG 1566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACTTTCCC TTACTCGCTT CCACGGAGAT GAATTATCAG CCGCCGTCGC GCCACCGCCG 660 TAATCTCCGA TAGCTGATAA ATCTCCATAA CTGCCGGAAG AACTCACCGA ACGCACCGGC 1626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATCTCCGA TAGCTGATAA ATCTCCATAA CTGCCGGAAG AACTCACCGA ACGCACCGGC 720 GACGGCGAGG GAGAGAAATC ACTCGACGGA GAAGAAGATA AAGG 1670 |||||||||| |||||||||| |||||||||| |||||||||| |||| GACGGCGAGG GAGAGAAATC ACTCGACGGA GAAGAAGATA AAGG 764 hqPGS_C10SLe0045H11.1+_SGN-E538295- (909 1670) ******************************************************************************** EST sequence 73 -strand 762 n (File: SGN-E538541-) 1 TCCAACAACA AACTCGACGA ACATGCCTCT TCATCCGGTA ATCGTATTTA ATCGTAACGT 61 TAGAAAAATC ACAATAATGA GACGGATTCA ACATATAAAC TGCAAACGCA CATGCATGTA 121 TTAATGTCCT CGGACTAGAG GTGACAATTG AACGAACTGA AGTCAAACTT GATGTCTAAC 181 ATGAAACTAA ACATCGATAT TTGATACGAG TTCGTTCACC TAAAATTTGT TTGGATCAAA 241 ATGAGTTCAA TCCGAAGATA GATCAAATAC CAAATCACAT CACCTTCCTT TTCTATTTGA 301 AGAAAAAGAA TGTCAAATGC ATTCGACTCA AAAGTCTATC GAAAACAACC TCTCTAATAA 361 TATGTACATT TTACTATTCT CAAACATCAC TCGTGAGACT AAACTTTCTA TATTGTTATC 421 GTCGATGTAT AGACGGAACT ACAAAATCTT ACTTACGCAT TCGACAAAAC TCAATAACTC 481 GTAAACTTCG TATTTATATT TTAAAATCAA CTATCCCGTA AAAACTATAA TTTATAAACT 541 TAAAATTCTA GCTTTGTTCC GCTCTTTTAA ATACATAATT ACCTCAAAAT GTAGGCAATC 601 ACTTTCCCTT ACTCGCTTCC ACGGAGATGA ATTATCAGCC GCCGTCGCGC CACCGCCGTA 661 ATCTCCGATA GCTGATAAAT CTCCATAACT GCCGGAAGAA CTCACCGAAC GCACCGGCGA 721 CGGCGAGGGA GAGAAATCAC TCGACGGAGA AGAAGATAAA GG Predicted gene structure (within gDNA segment 299 to 2270): Exon 1 909 1670 ( 762 n); cDNA 1 762 ( 762 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E538541- 1.000 762 1.000 C PGS_C10SLe0045H11.1+_SGN-E538541- (909 1670) Alignment (genomic DNA sequence = upper lines): TCCAACAACA AACTCGACGA ACATGCCTCT TCATCCGGTA ATCGTATTTA ATCGTAACGT 968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAACAACA AACTCGACGA ACATGCCTCT TCATCCGGTA ATCGTATTTA ATCGTAACGT 60 TAGAAAAATC ACAATAATGA GACGGATTCA ACATATAAAC TGCAAACGCA CATGCATGTA 1028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAAAATC ACAATAATGA GACGGATTCA ACATATAAAC TGCAAACGCA CATGCATGTA 120 TTAATGTCCT CGGACTAGAG GTGACAATTG AACGAACTGA AGTCAAACTT GATGTCTAAC 1088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATGTCCT CGGACTAGAG GTGACAATTG AACGAACTGA AGTCAAACTT GATGTCTAAC 180 ATGAAACTAA ACATCGATAT TTGATACGAG TTCGTTCACC TAAAATTTGT TTGGATCAAA 1148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAACTAA ACATCGATAT TTGATACGAG TTCGTTCACC TAAAATTTGT TTGGATCAAA 240 ATGAGTTCAA TCCGAAGATA GATCAAATAC CAAATCACAT CACCTTCCTT TTCTATTTGA 1208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGTTCAA TCCGAAGATA GATCAAATAC CAAATCACAT CACCTTCCTT TTCTATTTGA 300 AGAAAAAGAA TGTCAAATGC ATTCGACTCA AAAGTCTATC GAAAACAACC TCTCTAATAA 1268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAAAGAA TGTCAAATGC ATTCGACTCA AAAGTCTATC GAAAACAACC TCTCTAATAA 360 TATGTACATT TTACTATTCT CAAACATCAC TCGTGAGACT AAACTTTCTA TATTGTTATC 1328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGTACATT TTACTATTCT CAAACATCAC TCGTGAGACT AAACTTTCTA TATTGTTATC 420 GTCGATGTAT AGACGGAACT ACAAAATCTT ACTTACGCAT TCGACAAAAC TCAATAACTC 1388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGATGTAT AGACGGAACT ACAAAATCTT ACTTACGCAT TCGACAAAAC TCAATAACTC 480 GTAAACTTCG TATTTATATT TTAAAATCAA CTATCCCGTA AAAACTATAA TTTATAAACT 1448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAACTTCG TATTTATATT TTAAAATCAA CTATCCCGTA AAAACTATAA TTTATAAACT 540 TAAAATTCTA GCTTTGTTCC GCTCTTTTAA ATACATAATT ACCTCAAAAT GTAGGCAATC 1508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATTCTA GCTTTGTTCC GCTCTTTTAA ATACATAATT ACCTCAAAAT GTAGGCAATC 600 ACTTTCCCTT ACTCGCTTCC ACGGAGATGA ATTATCAGCC GCCGTCGCGC CACCGCCGTA 1568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTCCCTT ACTCGCTTCC ACGGAGATGA ATTATCAGCC GCCGTCGCGC CACCGCCGTA 660 ATCTCCGATA GCTGATAAAT CTCCATAACT GCCGGAAGAA CTCACCGAAC GCACCGGCGA 1628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCCGATA GCTGATAAAT CTCCATAACT GCCGGAAGAA CTCACCGAAC GCACCGGCGA 720 CGGCGAGGGA GAGAAATCAC TCGACGGAGA AGAAGATAAA GG 1670 |||||||||| |||||||||| |||||||||| |||||||||| || CGGCGAGGGA GAGAAATCAC TCGACGGAGA AGAAGATAAA GG 762 hqPGS_C10SLe0045H11.1+_SGN-E538541- (909 1670) ******************************************************************************** EST sequence 82 -strand 762 n (File: SGN-E539148-) 1 TCCAACAACA AACTCGACGA ACATGCCTCT TCATCCGGTA ATCGTATTTA ATCGTAACGT 61 TAGAAAAATC ACAATAATGA GACGGATTCA ACATATAAAC TGCAAACGCA CATGCATGTA 121 TTAATGTCCT CGGACTAGAG GTGACAATTG AACGAACTGA AGTCAAACTT GATGTCTAAC 181 ATGAAACTAA ACATCGATAT TTGATACGAG TTCGTTCACC TAAAATTTGT TTGGATCAAA 241 ATGAGTTCAA TCCGAAGATA GATCAAATAC CAAATCACAT CACCTTCCTT TTCTATTTGA 301 AGAAAAAGAA TGTCAAATGC ATTCGACTCA AAAGTCTATC GAAAACAACC TCTCTAATAA 361 TATGTACATT TTACTATTCT CAAACATCAC TCGTGAGACT AAACTTTCTA TATTGTTATC 421 GTCGATGTAT AGACGGAACT ACAAAATCTT ACTTACGCAT TCGACAAAAC TCAATAACTC 481 GTAAACTTCG TATTTATATT TTAAAATCAA CTATCCCGTA AAAACTATAA TTTATAAACT 541 TAAAATTCTA GCTTTGTTCC GCTCTTTTAA ATACATAATT ACCTCAAAAT GTAGGCAATC 601 ACTTTCCCTT ACTCGCTTCC ACGGAGATGA ATTATCAGCC GCCGTCGCGC CACCGCCGTA 661 ATCTCCGATA GCTGATAAAT CTCCATAACT GCCGGAAGAA CTCACCGAAC GCACCGGCGA 721 CGGCGAGGGA GAGAAATCAC TCGACGGAGA AGAAGATAAA GG Predicted gene structure (within gDNA segment 299 to 2270): Exon 1 909 1670 ( 762 n); cDNA 1 762 ( 762 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E539148- 1.000 762 1.000 C PGS_C10SLe0045H11.1+_SGN-E539148- (909 1670) Alignment (genomic DNA sequence = upper lines): TCCAACAACA AACTCGACGA ACATGCCTCT TCATCCGGTA ATCGTATTTA ATCGTAACGT 968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAACAACA AACTCGACGA ACATGCCTCT TCATCCGGTA ATCGTATTTA ATCGTAACGT 60 TAGAAAAATC ACAATAATGA GACGGATTCA ACATATAAAC TGCAAACGCA CATGCATGTA 1028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAAAATC ACAATAATGA GACGGATTCA ACATATAAAC TGCAAACGCA CATGCATGTA 120 TTAATGTCCT CGGACTAGAG GTGACAATTG AACGAACTGA AGTCAAACTT GATGTCTAAC 1088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATGTCCT CGGACTAGAG GTGACAATTG AACGAACTGA AGTCAAACTT GATGTCTAAC 180 ATGAAACTAA ACATCGATAT TTGATACGAG TTCGTTCACC TAAAATTTGT TTGGATCAAA 1148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAACTAA ACATCGATAT TTGATACGAG TTCGTTCACC TAAAATTTGT TTGGATCAAA 240 ATGAGTTCAA TCCGAAGATA GATCAAATAC CAAATCACAT CACCTTCCTT TTCTATTTGA 1208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGTTCAA TCCGAAGATA GATCAAATAC CAAATCACAT CACCTTCCTT TTCTATTTGA 300 AGAAAAAGAA TGTCAAATGC ATTCGACTCA AAAGTCTATC GAAAACAACC TCTCTAATAA 1268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAAAGAA TGTCAAATGC ATTCGACTCA AAAGTCTATC GAAAACAACC TCTCTAATAA 360 TATGTACATT TTACTATTCT CAAACATCAC TCGTGAGACT AAACTTTCTA TATTGTTATC 1328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGTACATT TTACTATTCT CAAACATCAC TCGTGAGACT AAACTTTCTA TATTGTTATC 420 GTCGATGTAT AGACGGAACT ACAAAATCTT ACTTACGCAT TCGACAAAAC TCAATAACTC 1388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGATGTAT AGACGGAACT ACAAAATCTT ACTTACGCAT TCGACAAAAC TCAATAACTC 480 GTAAACTTCG TATTTATATT TTAAAATCAA CTATCCCGTA AAAACTATAA TTTATAAACT 1448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAACTTCG TATTTATATT TTAAAATCAA CTATCCCGTA AAAACTATAA TTTATAAACT 540 TAAAATTCTA GCTTTGTTCC GCTCTTTTAA ATACATAATT ACCTCAAAAT GTAGGCAATC 1508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATTCTA GCTTTGTTCC GCTCTTTTAA ATACATAATT ACCTCAAAAT GTAGGCAATC 600 ACTTTCCCTT ACTCGCTTCC ACGGAGATGA ATTATCAGCC GCCGTCGCGC CACCGCCGTA 1568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTCCCTT ACTCGCTTCC ACGGAGATGA ATTATCAGCC GCCGTCGCGC CACCGCCGTA 660 ATCTCCGATA GCTGATAAAT CTCCATAACT GCCGGAAGAA CTCACCGAAC GCACCGGCGA 1628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCCGATA GCTGATAAAT CTCCATAACT GCCGGAAGAA CTCACCGAAC GCACCGGCGA 720 CGGCGAGGGA GAGAAATCAC TCGACGGAGA AGAAGATAAA GG 1670 |||||||||| |||||||||| |||||||||| |||||||||| || CGGCGAGGGA GAGAAATCAC TCGACGGAGA AGAAGATAAA GG 762 hqPGS_C10SLe0045H11.1+_SGN-E539148- (909 1670) ******************************************************************************** EST sequence 77 -strand 763 n (File: SGN-E538614-) 1 TCCAAACAAC AAACTCGACG AACATGCCTC TTCATCCGGT AATCGTATTT AATCGTAACG 61 TTAGAAAAAT CACAATAATG AGACGGATTC AACATATAAA CTGCAAACGC ACATGCATGT 121 ATTAATGTCC TCGGACTAGA GGTGACAATT GAACGAACTG AAGTCAAACT TGATGTCTAA 181 CATGAAACTA AACATCGATA TTTGATACGA GTTCGTTCAC CTAAAATTTG TTTGGATCAA 241 AATGAGTTCA ATCCGAAGAT AGATCAAATA CCAAATCACA TCACCTTCCT TTTCTATTTG 301 AAGAAAAAGA ATGTCAAATG CATTCGACTC AAAAGTCTAT CGAAAACAAC CTCTCTAATA 361 ATATGTACAT TTTACTATTC TCAAACATCA CTCGTGAGAC TAAACTTTCT ATATTGTTAT 421 CGTCGATGTA TAGACGGAAC TACAAAATCT TACTTACGCA TTCGACAAAA CTCAATAACT 481 CGTAAACTTC GTATTTATAT TTTAAAATCA ACTATCCCGT AAAAACTATA ATTTATAAAC 541 TTAAAATTCT AGCTTTGTTC CGCTCTTTTA AATACATAAT TACCTCAAAA TGTAGGCAAT 601 CACTTTCCCT TACTCGCTTC CACGGAGATG AATTATCAGC CGCCGTCGCG CCACCGCCGT 661 AATCTCCGAT AGCTGATAAA TCTCCATAAC TGCCGGAAGA ACTCACCGAA CGCACCGGCG 721 ACGGCGAGGG AGAGAAATCA CTCGACGGAG AAGAAGATAA AGG Predicted gene structure (within gDNA segment 262 to 2270): Exon 1 912 1670 ( 759 n); cDNA 5 763 ( 759 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E538614- 1.000 759 0.995 C PGS_C10SLe0045H11.1+_SGN-E538614- (912 1670) Alignment (genomic DNA sequence = upper lines): AACAACAAAC TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG 971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAACAAAC TCGACGAACA TGCCTCTTCA TCCGGTAATC GTATTTAATC GTAACGTTAG 64 AAAAATCACA ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA 1031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATCACA ATAATGAGAC GGATTCAACA TATAAACTGC AAACGCACAT GCATGTATTA 124 ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG 1091 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT CAAACTTGAT GTCTAACATG 184 AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG 1151 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA AATTTGTTTG GATCAAAATG 244 AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA 1211 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC CTTCCTTTTC TATTTGAAGA 304 AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT 1271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA AACAACCTCT CTAATAATAT 364 GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC 1331 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA CTTTCTATAT TGTTATCGTC 424 GATGTATAGA CGGAACTACA AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA 1391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTATAGA CGGAACTACA AAATCTTACT TACGCATTCG ACAAAACTCA ATAACTCGTA 484 AACTTCGTAT TTATATTTTA AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA 1451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTCGTAT TTATATTTTA AAATCAACTA TCCCGTAAAA ACTATAATTT ATAAACTTAA 544 AATTCTAGCT TTGTTCCGCT CTTTTAAATA CATAATTACC TCAAAATGTA GGCAATCACT 1511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCTAGCT TTGTTCCGCT CTTTTAAATA CATAATTACC TCAAAATGTA GGCAATCACT 604 TTCCCTTACT CGCTTCCACG GAGATGAATT ATCAGCCGCC GTCGCGCCAC CGCCGTAATC 1571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCCTTACT CGCTTCCACG GAGATGAATT ATCAGCCGCC GTCGCGCCAC CGCCGTAATC 664 TCCGATAGCT GATAAATCTC CATAACTGCC GGAAGAACTC ACCGAACGCA CCGGCGACGG 1631 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGATAGCT GATAAATCTC CATAACTGCC GGAAGAACTC ACCGAACGCA CCGGCGACGG 724 CGAGGGAGAG AAATCACTCG ACGGAGAAGA AGATAAAGG 1670 |||||||||| |||||||||| |||||||||| ||||||||| CGAGGGAGAG AAATCACTCG ACGGAGAAGA AGATAAAGG 763 hqPGS_C10SLe0045H11.1+_SGN-E538614- (912 1670) ******************************************************************************** EST sequence 74 -strand 730 n (File: SGN-E548074-) 1 ATCCGGTAAT CGTATTTAAT CGTAACGTTA GAAAAATCAC AATAATGAGA CGGATTCAAC 61 ATATAAACTG CAAACGCACA TGCATGTATT AATGTCCTCG GACTAGAGGT GACAATTGAA 121 CGAACTGAAG TCAAACTTGA TGTCTAACAT GAAACTAAAC ATCGATATTT GATACGAGTT 181 CGTTCACCTA AAATTTGTTT GGATCAAAAT GAGTTCAATC CGAAGATAGA TCAAATACCA 241 AATCACATCA CCTTCCTTTT CTATTTGAAG AAAAAGAATG TCAAATGCAT TCGACTCAAA 301 AGTCTATCGA AAACAACCTC TCTAATAATA TGTACATTTT ACTATTCTCA AACATCACTC 361 GTGAGACTAA ACTTTCTATA TTGTTATCGT CGATGTATAG ACGGAACTAC AAAATCTTAC 421 TTACGCATTC GACAAAACTC AATAACTCGT AAACTTCGTA TTTATATTTT AAAATCAACT 481 ATCCCGTAAA AACTATAATT TATAAACTTA AAATTCTAGC TTTGTTCCGC TCTTTTAAAT 541 ACATAATTAC CTCAAAATGT AGGCAATCAC TTTCCCTTAC TCGCTTCCAC GGAGATGAAT 601 TATCAGCCGC CGTCGCGCCA CCGCCGTAAT CTCCGATAGC TGATAAATCT CCATAACTGC 661 CGGAAGAACT CACCGAACGC ACCGGCGACG GCGAGGGAGA GAAATCACTC GACGGAGAAG 721 AAGATAAAGG Predicted gene structure (within gDNA segment 331 to 2270): Exon 1 941 1670 ( 730 n); cDNA 1 730 ( 730 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E548074- 1.000 730 1.000 C PGS_C10SLe0045H11.1+_SGN-E548074- (941 1670) Alignment (genomic DNA sequence = upper lines): ATCCGGTAAT CGTATTTAAT CGTAACGTTA GAAAAATCAC AATAATGAGA CGGATTCAAC 1000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCGGTAAT CGTATTTAAT CGTAACGTTA GAAAAATCAC AATAATGAGA CGGATTCAAC 60 ATATAAACTG CAAACGCACA TGCATGTATT AATGTCCTCG GACTAGAGGT GACAATTGAA 1060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATAAACTG CAAACGCACA TGCATGTATT AATGTCCTCG GACTAGAGGT GACAATTGAA 120 CGAACTGAAG TCAAACTTGA TGTCTAACAT GAAACTAAAC ATCGATATTT GATACGAGTT 1120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACTGAAG TCAAACTTGA TGTCTAACAT GAAACTAAAC ATCGATATTT GATACGAGTT 180 CGTTCACCTA AAATTTGTTT GGATCAAAAT GAGTTCAATC CGAAGATAGA TCAAATACCA 1180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTCACCTA AAATTTGTTT GGATCAAAAT GAGTTCAATC CGAAGATAGA TCAAATACCA 240 AATCACATCA CCTTCCTTTT CTATTTGAAG AAAAAGAATG TCAAATGCAT TCGACTCAAA 1240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCACATCA CCTTCCTTTT CTATTTGAAG AAAAAGAATG TCAAATGCAT TCGACTCAAA 300 AGTCTATCGA AAACAACCTC TCTAATAATA TGTACATTTT ACTATTCTCA AACATCACTC 1300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCTATCGA AAACAACCTC TCTAATAATA TGTACATTTT ACTATTCTCA AACATCACTC 360 GTGAGACTAA ACTTTCTATA TTGTTATCGT CGATGTATAG ACGGAACTAC AAAATCTTAC 1360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAGACTAA ACTTTCTATA TTGTTATCGT CGATGTATAG ACGGAACTAC AAAATCTTAC 420 TTACGCATTC GACAAAACTC AATAACTCGT AAACTTCGTA TTTATATTTT AAAATCAACT 1420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACGCATTC GACAAAACTC AATAACTCGT AAACTTCGTA TTTATATTTT AAAATCAACT 480 ATCCCGTAAA AACTATAATT TATAAACTTA AAATTCTAGC TTTGTTCCGC TCTTTTAAAT 1480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCGTAAA AACTATAATT TATAAACTTA AAATTCTAGC TTTGTTCCGC TCTTTTAAAT 540 ACATAATTAC CTCAAAATGT AGGCAATCAC TTTCCCTTAC TCGCTTCCAC GGAGATGAAT 1540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATAATTAC CTCAAAATGT AGGCAATCAC TTTCCCTTAC TCGCTTCCAC GGAGATGAAT 600 TATCAGCCGC CGTCGCGCCA CCGCCGTAAT CTCCGATAGC TGATAAATCT CCATAACTGC 1600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCAGCCGC CGTCGCGCCA CCGCCGTAAT CTCCGATAGC TGATAAATCT CCATAACTGC 660 CGGAAGAACT CACCGAACGC ACCGGCGACG GCGAGGGAGA GAAATCACTC GACGGAGAAG 1660 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGAACT CACCGAACGC ACCGGCGACG GCGAGGGAGA GAAATCACTC GACGGAGAAG 720 AAGATAAAGG 1670 |||||||||| AAGATAAAGG 730 hqPGS_C10SLe0045H11.1+_SGN-E548074- (941 1670) ******************************************************************************** EST sequence 61 -strand 725 n (File: SGN-E548026-) 1 GTAATCGTAT TTAATCGTAA CGTTAGAAAA ATCACAATAA TGAGACGGAT TCAACATATA 61 AACTGCAAAC GCACATGCAT GTATTAATGT CCTCGGACTA GAGGTGACAA TTGAACGAAC 121 TGAAGTCAAA CTTGATGTCT AACATGAAAC TAAACATCGA TATTTGATAC GAGTTCGTTC 181 ACCTAAAATT TGTTTGGATC AAAATGAGTT CAATCCGAAG ATAGATCAAA TACCAAATCA 241 CATCACCTTC CTTTTCTATT TGAAGAAAAA GAATGTCAAA TGCATTCGAC TCAAAAGTCT 301 ATCGAAAACA ACCTCTCTAA TAATATGTAC ATTTTACTAT TCTCAAACAT CACTCGTGAG 361 ACTAAACTTT CTATATTGTT ATCGTCGATG TATAGACGGA ACTACAAAAT CTTACTTACG 421 CATTCGACAA AACTCAATAA CTCGTAAACT TCGTATTTAT ATTTTAAAAT CAACTATCCC 481 GTAAAAACTA TAATTTATAA ACTTAAAATT CTAGCTTTGT TCCGCTCTTT TAAATACATA 541 ATTACCTCAA AATGTAGGCA ATCACTTTCC CTTACTCGCT TCCACGGAGA TGAATTATCA 601 GCCGCCGTCG CGCCACCGCC GTAATCTCCG ATAGCTGATA AATCTCCATA ACTGCCGGAA 661 GAACTCACCG AACGCACCGG CGACGGCGAG GGAGAGAAAT CACTCGACGG AGAAGAAGAT 721 AAAGG Predicted gene structure (within gDNA segment 336 to 2270): Exon 1 946 1670 ( 725 n); cDNA 1 725 ( 725 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E548026- 1.000 725 1.000 C PGS_C10SLe0045H11.1+_SGN-E548026- (946 1670) Alignment (genomic DNA sequence = upper lines): GTAATCGTAT TTAATCGTAA CGTTAGAAAA ATCACAATAA TGAGACGGAT TCAACATATA 1005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATCGTAT TTAATCGTAA CGTTAGAAAA ATCACAATAA TGAGACGGAT TCAACATATA 60 AACTGCAAAC GCACATGCAT GTATTAATGT CCTCGGACTA GAGGTGACAA TTGAACGAAC 1065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGCAAAC GCACATGCAT GTATTAATGT CCTCGGACTA GAGGTGACAA TTGAACGAAC 120 TGAAGTCAAA CTTGATGTCT AACATGAAAC TAAACATCGA TATTTGATAC GAGTTCGTTC 1125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGTCAAA CTTGATGTCT AACATGAAAC TAAACATCGA TATTTGATAC GAGTTCGTTC 180 ACCTAAAATT TGTTTGGATC AAAATGAGTT CAATCCGAAG ATAGATCAAA TACCAAATCA 1185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTAAAATT TGTTTGGATC AAAATGAGTT CAATCCGAAG ATAGATCAAA TACCAAATCA 240 CATCACCTTC CTTTTCTATT TGAAGAAAAA GAATGTCAAA TGCATTCGAC TCAAAAGTCT 1245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCACCTTC CTTTTCTATT TGAAGAAAAA GAATGTCAAA TGCATTCGAC TCAAAAGTCT 300 ATCGAAAACA ACCTCTCTAA TAATATGTAC ATTTTACTAT TCTCAAACAT CACTCGTGAG 1305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGAAAACA ACCTCTCTAA TAATATGTAC ATTTTACTAT TCTCAAACAT CACTCGTGAG 360 ACTAAACTTT CTATATTGTT ATCGTCGATG TATAGACGGA ACTACAAAAT CTTACTTACG 1365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAAACTTT CTATATTGTT ATCGTCGATG TATAGACGGA ACTACAAAAT CTTACTTACG 420 CATTCGACAA AACTCAATAA CTCGTAAACT TCGTATTTAT ATTTTAAAAT CAACTATCCC 1425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTCGACAA AACTCAATAA CTCGTAAACT TCGTATTTAT ATTTTAAAAT CAACTATCCC 480 GTAAAAACTA TAATTTATAA ACTTAAAATT CTAGCTTTGT TCCGCTCTTT TAAATACATA 1485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAAAACTA TAATTTATAA ACTTAAAATT CTAGCTTTGT TCCGCTCTTT TAAATACATA 540 ATTACCTCAA AATGTAGGCA ATCACTTTCC CTTACTCGCT TCCACGGAGA TGAATTATCA 1545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACCTCAA AATGTAGGCA ATCACTTTCC CTTACTCGCT TCCACGGAGA TGAATTATCA 600 GCCGCCGTCG CGCCACCGCC GTAATCTCCG ATAGCTGATA AATCTCCATA ACTGCCGGAA 1605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGCCGTCG CGCCACCGCC GTAATCTCCG ATAGCTGATA AATCTCCATA ACTGCCGGAA 660 GAACTCACCG AACGCACCGG CGACGGCGAG GGAGAGAAAT CACTCGACGG AGAAGAAGAT 1665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTCACCG AACGCACCGG CGACGGCGAG GGAGAGAAAT CACTCGACGG AGAAGAAGAT 720 AAAGG 1670 ||||| AAAGG 725 hqPGS_C10SLe0045H11.1+_SGN-E548026- (946 1670) ******************************************************************************** EST sequence 69 -strand 724 n (File: SGN-E538399-) 1 TAATCGTATT TAATCGTAAC GTTAGAAAAA TCACAATAAT GAGACGGATT CAACATATAA 61 ACTGCAAACG CACATGCATG TATTAATGTC CTCGGACTAG AGGTGACAAT TGAACGAACT 121 GAAGTCAAAC TTGATGTCTA ACATGAAACT AAACATCGAT ATTTGATACG AGTTCGTTCA 181 CCTAAAATTT GTTTGGATCA AAATGAGTTC AATCCGAAGA TAGATCAAAT ACCAAATCAC 241 ATCACCTTCC TTTTCTATTT GAAGAAAAAG AATGTCAAAT GCATTCGACT CAAAAGTCTA 301 TCGAAAACAA CCTCTCTAAT AATATGTACA TTTTACTATT CTCAAACATC ACTCGTGAGA 361 CTAAACTTTC TATATTGTTA TCGTCGATGT ATAGACGGAA CTACAAAATC TTACTTACGC 421 ATTCGACAAA ACTCAATAAC TCGTAAACTT CGTATTTATA TTTTAAAATC AACTATCCCG 481 TAAAAACTAT AATTTATAAA CTTAAAATTC TAGCTTTGTT CCGCTCTTTT AAATACATAA 541 TTACCTCAAA ATGTAGGCAA TCACTTTCCC TTACTCGCTT CCACGGAGAT GAATTATCAG 601 CCGCCGTCGC GCCACCGCCG TAATCTCCGA TAGCTGATAA ATCTCCATAA CTGCCGGAAG 661 AACTCACCGA ACGCACCGGC GACGGCGAGG GAGAGAAATC ACTCGACGGA GAAGAAGATA 721 AAGG Predicted gene structure (within gDNA segment 337 to 2270): Exon 1 947 1670 ( 724 n); cDNA 1 724 ( 724 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E538399- 1.000 724 1.000 C PGS_C10SLe0045H11.1+_SGN-E538399- (947 1670) Alignment (genomic DNA sequence = upper lines): TAATCGTATT TAATCGTAAC GTTAGAAAAA TCACAATAAT GAGACGGATT CAACATATAA 1006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATCGTATT TAATCGTAAC GTTAGAAAAA TCACAATAAT GAGACGGATT CAACATATAA 60 ACTGCAAACG CACATGCATG TATTAATGTC CTCGGACTAG AGGTGACAAT TGAACGAACT 1066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGCAAACG CACATGCATG TATTAATGTC CTCGGACTAG AGGTGACAAT TGAACGAACT 120 GAAGTCAAAC TTGATGTCTA ACATGAAACT AAACATCGAT ATTTGATACG AGTTCGTTCA 1126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTCAAAC TTGATGTCTA ACATGAAACT AAACATCGAT ATTTGATACG AGTTCGTTCA 180 CCTAAAATTT GTTTGGATCA AAATGAGTTC AATCCGAAGA TAGATCAAAT ACCAAATCAC 1186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAAAATTT GTTTGGATCA AAATGAGTTC AATCCGAAGA TAGATCAAAT ACCAAATCAC 240 ATCACCTTCC TTTTCTATTT GAAGAAAAAG AATGTCAAAT GCATTCGACT CAAAAGTCTA 1246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACCTTCC TTTTCTATTT GAAGAAAAAG AATGTCAAAT GCATTCGACT CAAAAGTCTA 300 TCGAAAACAA CCTCTCTAAT AATATGTACA TTTTACTATT CTCAAACATC ACTCGTGAGA 1306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAAAACAA CCTCTCTAAT AATATGTACA TTTTACTATT CTCAAACATC ACTCGTGAGA 360 CTAAACTTTC TATATTGTTA TCGTCGATGT ATAGACGGAA CTACAAAATC TTACTTACGC 1366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAACTTTC TATATTGTTA TCGTCGATGT ATAGACGGAA CTACAAAATC TTACTTACGC 420 ATTCGACAAA ACTCAATAAC TCGTAAACTT CGTATTTATA TTTTAAAATC AACTATCCCG 1426 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCGACAAA ACTCAATAAC TCGTAAACTT CGTATTTATA TTTTAAAATC AACTATCCCG 480 TAAAAACTAT AATTTATAAA CTTAAAATTC TAGCTTTGTT CCGCTCTTTT AAATACATAA 1486 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAAACTAT AATTTATAAA CTTAAAATTC TAGCTTTGTT CCGCTCTTTT AAATACATAA 540 TTACCTCAAA ATGTAGGCAA TCACTTTCCC TTACTCGCTT CCACGGAGAT GAATTATCAG 1546 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCTCAAA ATGTAGGCAA TCACTTTCCC TTACTCGCTT CCACGGAGAT GAATTATCAG 600 CCGCCGTCGC GCCACCGCCG TAATCTCCGA TAGCTGATAA ATCTCCATAA CTGCCGGAAG 1606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCGTCGC GCCACCGCCG TAATCTCCGA TAGCTGATAA ATCTCCATAA CTGCCGGAAG 660 AACTCACCGA ACGCACCGGC GACGGCGAGG GAGAGAAATC ACTCGACGGA GAAGAAGATA 1666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCACCGA ACGCACCGGC GACGGCGAGG GAGAGAAATC ACTCGACGGA GAAGAAGATA 720 AAGG 1670 |||| AAGG 724 hqPGS_C10SLe0045H11.1+_SGN-E538399- (947 1670) ******************************************************************************** EST sequence 62 -strand 670 n (File: SGN-E538261-) 1 ATATAAACTG CAAACGCACA TGCATGTATT AATGTCCTCG GACTAGAGGT GACAATTGAA 61 CGAACTGAAG TCAAACTTGA TGTCTAACAT GAAACTAAAC ATCGATATTT GATACGAGTT 121 CGTTCACCTA CAATTTGTTT GGATCAAAAT GAGTTCAATC CGAAGATAGA TCAAATACCA 181 AATCACATCA CCTTCCTTTT CTATTTGAAG AAAAAGAATG TCAAATGCAT TCGACTCAAA 241 AGTCTATCGA AAACAACCTC TCTAATAATA TGTACATTTT ACTATTCTCA AACATCACTC 301 GTGAGACTAA ACTTTCTATA TTGTTATCGT CGATGTATAG ACGGAACTAC AAAATCTTAC 361 TTACGCATTC GACAAAACTC AATAACTCGT AAACTTCGTA TTTATATTTT AAAATCAACT 421 ATCCCGTAAA AACTATAATT TATAAACTTA AAATTCTAGC TTTGTTCCGC TCTTTTAAAT 481 ACATAATTAC CTCAAAATGT AGGCAATCAC TTTCCCTTAC TCGCTTCCAC GGAGATGAAT 541 TATCAGCCGC CGTCGCGCCA CCGCCGTAAT CTCCGATAGC TGATAAATCT CCATAACTGC 601 CGGAAGAACT CACCGAACGC ACCGGCGACG GCGAGGGAGA GAAATCACTC GACGGAGAAG 661 AAGATAAAGG Predicted gene structure (within gDNA segment 391 to 2270): Exon 1 1001 1670 ( 670 n); cDNA 1 670 ( 670 n); score: 0.999 MATCH C10SLe0045H11.1+ SGN-E538261- 0.999 670 1.000 C PGS_C10SLe0045H11.1+_SGN-E538261- (1001 1670) Alignment (genomic DNA sequence = upper lines): ATATAAACTG CAAACGCACA TGCATGTATT AATGTCCTCG GACTAGAGGT GACAATTGAA 1060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATAAACTG CAAACGCACA TGCATGTATT AATGTCCTCG GACTAGAGGT GACAATTGAA 60 CGAACTGAAG TCAAACTTGA TGTCTAACAT GAAACTAAAC ATCGATATTT GATACGAGTT 1120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACTGAAG TCAAACTTGA TGTCTAACAT GAAACTAAAC ATCGATATTT GATACGAGTT 120 CGTTCACCTA AAATTTGTTT GGATCAAAAT GAGTTCAATC CGAAGATAGA TCAAATACCA 1180 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTCACCTA CAATTTGTTT GGATCAAAAT GAGTTCAATC CGAAGATAGA TCAAATACCA 180 AATCACATCA CCTTCCTTTT CTATTTGAAG AAAAAGAATG TCAAATGCAT TCGACTCAAA 1240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCACATCA CCTTCCTTTT CTATTTGAAG AAAAAGAATG TCAAATGCAT TCGACTCAAA 240 AGTCTATCGA AAACAACCTC TCTAATAATA TGTACATTTT ACTATTCTCA AACATCACTC 1300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCTATCGA AAACAACCTC TCTAATAATA TGTACATTTT ACTATTCTCA AACATCACTC 300 GTGAGACTAA ACTTTCTATA TTGTTATCGT CGATGTATAG ACGGAACTAC AAAATCTTAC 1360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAGACTAA ACTTTCTATA TTGTTATCGT CGATGTATAG ACGGAACTAC AAAATCTTAC 360 TTACGCATTC GACAAAACTC AATAACTCGT AAACTTCGTA TTTATATTTT AAAATCAACT 1420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACGCATTC GACAAAACTC AATAACTCGT AAACTTCGTA TTTATATTTT AAAATCAACT 420 ATCCCGTAAA AACTATAATT TATAAACTTA AAATTCTAGC TTTGTTCCGC TCTTTTAAAT 1480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCGTAAA AACTATAATT TATAAACTTA AAATTCTAGC TTTGTTCCGC TCTTTTAAAT 480 ACATAATTAC CTCAAAATGT AGGCAATCAC TTTCCCTTAC TCGCTTCCAC GGAGATGAAT 1540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATAATTAC CTCAAAATGT AGGCAATCAC TTTCCCTTAC TCGCTTCCAC GGAGATGAAT 540 TATCAGCCGC CGTCGCGCCA CCGCCGTAAT CTCCGATAGC TGATAAATCT CCATAACTGC 1600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCAGCCGC CGTCGCGCCA CCGCCGTAAT CTCCGATAGC TGATAAATCT CCATAACTGC 600 CGGAAGAACT CACCGAACGC ACCGGCGACG GCGAGGGAGA GAAATCACTC GACGGAGAAG 1660 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGAACT CACCGAACGC ACCGGCGACG GCGAGGGAGA GAAATCACTC GACGGAGAAG 660 AAGATAAAGG 1670 |||||||||| AAGATAAAGG 670 hqPGS_C10SLe0045H11.1+_SGN-E538261- (1001 1670) ******************************************************************************** EST sequence 75 -strand 670 n (File: SGN-E538553-) 1 ATATAAACTG CAAACGCACA TGCATGTATT AATGTCCTCG GCCTAGAGGT GACAATTGAC 61 CGAACTGAAG TCAAACTTGA TGTCTAACAT GAAACTAAAC ATCGATATTT GATACGAGTT 121 CGTTCACCTA AAATTTGTTT GGATCAAAAT GAGTTCAATC CGAAGATAGA TCAAATACCA 181 AATCACATCA CCTTCCTTTT CTATTTGAAG AAAAAGAATG TCAAATGCAT TCGACTCAAA 241 AGTCTATCGA AAACAACCTC TCTAATAATA TGTACATTTT ACTATTCTCA AACATCACTC 301 GTGAGACTAA ACTTTCTATA TTGTTATCGT CGATGTATAG ACGGAACTAC AAAATCTTAC 361 TTACGCATTC GACAAAACTC AATAACTCGT AAACTTCGTA TTTATATTTT AAAATCAACT 421 ATCCCGTAAA AACTATAATT TATAAACTTA AAATTCTAGC TTTGTTCCGC TCTTTTAAAT 481 ACATAATTAC CTCAAAATGT AGGCAATCAC TTTCCCTTAC TCGCTTCCAC GGAGATGAAT 541 TATCAGCCGC CGTCGCGCCA CCGCCGTAAT CTCCGATAGC TGATAAATCT CCATAACTGC 601 CGGAAGAACT CACCGAACGC ACCGGCGACG GCGAGGGAGA GAAATCACTC GACGGAGAAG 661 AAGATAAAGG Predicted gene structure (within gDNA segment 391 to 2270): Exon 1 1001 1670 ( 670 n); cDNA 1 670 ( 670 n); score: 0.997 MATCH C10SLe0045H11.1+ SGN-E538553- 0.997 670 1.000 C PGS_C10SLe0045H11.1+_SGN-E538553- (1001 1670) Alignment (genomic DNA sequence = upper lines): ATATAAACTG CAAACGCACA TGCATGTATT AATGTCCTCG GACTAGAGGT GACAATTGAA 1060 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ||||||||| ATATAAACTG CAAACGCACA TGCATGTATT AATGTCCTCG GCCTAGAGGT GACAATTGAC 60 CGAACTGAAG TCAAACTTGA TGTCTAACAT GAAACTAAAC ATCGATATTT GATACGAGTT 1120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACTGAAG TCAAACTTGA TGTCTAACAT GAAACTAAAC ATCGATATTT GATACGAGTT 120 CGTTCACCTA AAATTTGTTT GGATCAAAAT GAGTTCAATC CGAAGATAGA TCAAATACCA 1180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTCACCTA AAATTTGTTT GGATCAAAAT GAGTTCAATC CGAAGATAGA TCAAATACCA 180 AATCACATCA CCTTCCTTTT CTATTTGAAG AAAAAGAATG TCAAATGCAT TCGACTCAAA 1240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCACATCA CCTTCCTTTT CTATTTGAAG AAAAAGAATG TCAAATGCAT TCGACTCAAA 240 AGTCTATCGA AAACAACCTC TCTAATAATA TGTACATTTT ACTATTCTCA AACATCACTC 1300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCTATCGA AAACAACCTC TCTAATAATA TGTACATTTT ACTATTCTCA AACATCACTC 300 GTGAGACTAA ACTTTCTATA TTGTTATCGT CGATGTATAG ACGGAACTAC AAAATCTTAC 1360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAGACTAA ACTTTCTATA TTGTTATCGT CGATGTATAG ACGGAACTAC AAAATCTTAC 360 TTACGCATTC GACAAAACTC AATAACTCGT AAACTTCGTA TTTATATTTT AAAATCAACT 1420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACGCATTC GACAAAACTC AATAACTCGT AAACTTCGTA TTTATATTTT AAAATCAACT 420 ATCCCGTAAA AACTATAATT TATAAACTTA AAATTCTAGC TTTGTTCCGC TCTTTTAAAT 1480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCGTAAA AACTATAATT TATAAACTTA AAATTCTAGC TTTGTTCCGC TCTTTTAAAT 480 ACATAATTAC CTCAAAATGT AGGCAATCAC TTTCCCTTAC TCGCTTCCAC GGAGATGAAT 1540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATAATTAC CTCAAAATGT AGGCAATCAC TTTCCCTTAC TCGCTTCCAC GGAGATGAAT 540 TATCAGCCGC CGTCGCGCCA CCGCCGTAAT CTCCGATAGC TGATAAATCT CCATAACTGC 1600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCAGCCGC CGTCGCGCCA CCGCCGTAAT CTCCGATAGC TGATAAATCT CCATAACTGC 600 CGGAAGAACT CACCGAACGC ACCGGCGACG GCGAGGGAGA GAAATCACTC GACGGAGAAG 1660 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGAACT CACCGAACGC ACCGGCGACG GCGAGGGAGA GAAATCACTC GACGGAGAAG 660 AAGATAAAGG 1670 |||||||||| AAGATAAAGG 670 hqPGS_C10SLe0045H11.1+_SGN-E538553- (1001 1670) ******************************************************************************** EST sequence 68 -strand 678 n (File: SGN-E538372-) 1 AAACGCACAT GCATGTATTA ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT 61 CAAACTTGAT GTCTAACATG AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA 121 AATTTGTTTG GATCAAAATG AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC 181 CTTCCTTTTC TATTTGAAGA AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA 241 AACAACCTCT CTAATAATAT GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA 301 CTTTCTATAT TGTTATCGTC GATGTATAGA CGGAACTACA AAATCTTACT TACGCATTCG 361 ACAAAACTCA ATAACTCGTA AACTTCGTAT TTATATTTTA AAATCAACTA TCCCGTAAAA 421 ACTATAATTT ATAAACTTAA AATTCTAGCT TTGTTCCGCT CTTTTAAATA CATAATTACC 481 TCAAAATGTA GGCAATCACT TTCCCTTACT CGCTTCCACG GAGATGAATT ATCAGCCGCC 541 GTCGCGCCAC CGCCGTAATC TCCGATAGCT GATAAATCTC CATAACTGCC GGAAGAACTC 601 ACCGAACGCA CCGGCGACGG CGAGGGAGAG AAATCACTCG ACGGAGAAGA AGATAAAGGC 661 CTGCAGCCCG GGGGATCC Predicted gene structure (within gDNA segment 402 to 2460): Exon 1 1012 1670 ( 659 n); cDNA 1 659 ( 659 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E538372- 1.000 659 0.972 C PGS_C10SLe0045H11.1+_SGN-E538372- (1012 1670) Alignment (genomic DNA sequence = upper lines): AAACGCACAT GCATGTATTA ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT 1071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACGCACAT GCATGTATTA ATGTCCTCGG ACTAGAGGTG ACAATTGAAC GAACTGAAGT 60 CAAACTTGAT GTCTAACATG AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA 1131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTTGAT GTCTAACATG AAACTAAACA TCGATATTTG ATACGAGTTC GTTCACCTAA 120 AATTTGTTTG GATCAAAATG AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC 1191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGTTTG GATCAAAATG AGTTCAATCC GAAGATAGAT CAAATACCAA ATCACATCAC 180 CTTCCTTTTC TATTTGAAGA AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA 1251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCTTTTC TATTTGAAGA AAAAGAATGT CAAATGCATT CGACTCAAAA GTCTATCGAA 240 AACAACCTCT CTAATAATAT GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA 1311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAACCTCT CTAATAATAT GTACATTTTA CTATTCTCAA ACATCACTCG TGAGACTAAA 300 CTTTCTATAT TGTTATCGTC GATGTATAGA CGGAACTACA AAATCTTACT TACGCATTCG 1371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTATAT TGTTATCGTC GATGTATAGA CGGAACTACA AAATCTTACT TACGCATTCG 360 ACAAAACTCA ATAACTCGTA AACTTCGTAT TTATATTTTA AAATCAACTA TCCCGTAAAA 1431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAACTCA ATAACTCGTA AACTTCGTAT TTATATTTTA AAATCAACTA TCCCGTAAAA 420 ACTATAATTT ATAAACTTAA AATTCTAGCT TTGTTCCGCT CTTTTAAATA CATAATTACC 1491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTATAATTT ATAAACTTAA AATTCTAGCT TTGTTCCGCT CTTTTAAATA CATAATTACC 480 TCAAAATGTA GGCAATCACT TTCCCTTACT CGCTTCCACG GAGATGAATT ATCAGCCGCC 1551 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAATGTA GGCAATCACT TTCCCTTACT CGCTTCCACG GAGATGAATT ATCAGCCGCC 540 GTCGCGCCAC CGCCGTAATC TCCGATAGCT GATAAATCTC CATAACTGCC GGAAGAACTC 1611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGCGCCAC CGCCGTAATC TCCGATAGCT GATAAATCTC CATAACTGCC GGAAGAACTC 600 ACCGAACGCA CCGGCGACGG CGAGGGAGAG AAATCACTCG ACGGAGAAGA AGATAAAGG 1670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACCGAACGCA CCGGCGACGG CGAGGGAGAG AAATCACTCG ACGGAGAAGA AGATAAAGG 659 hqPGS_C10SLe0045H11.1+_SGN-E538372- (1012 1670) ******************************************************************************** EST sequence 120 -strand 527 n (File: SGN-E267320-) 1 ATCAAAATGA GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT 61 ATTTGAAGAA AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC 121 TAATAATATG TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT 181 GTTATCGTCG ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA 241 TAACTCGTAA ACTTCGTATT TATATTTTAA AATCAACTAT CCCGTAAAAA CTATAATTTA 301 TAAACTTAAA ATTCTAGCTT TGTTCCGCTC TTTTAAATAC ATAATTACCT CAAAATGTAG 361 GCAATCACTT TCCCTTACTC GCTTCCACGG AGATGAATTA TCAGCCGCCG TCGCGCCACC 421 GCCGTAATCT CCGATAGCTG ATAAATCTCC ATAACTGCCG GAAGAACTCA CCGAACGCAC 481 CGGCGACGGC GAGGGAGAGA AATCACTCGA CGGAGAAGAA GATAAAG Predicted gene structure (within gDNA segment 533 to 2269): Exon 1 1143 1669 ( 527 n); cDNA 1 527 ( 527 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E267320- 1.000 527 1.000 C PGS_C10SLe0045H11.1+_SGN-E267320- (1143 1669) Alignment (genomic DNA sequence = upper lines): ATCAAAATGA GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT 1202 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAATGA GTTCAATCCG AAGATAGATC AAATACCAAA TCACATCACC TTCCTTTTCT 60 ATTTGAAGAA AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC 1262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGAAGAA AAAGAATGTC AAATGCATTC GACTCAAAAG TCTATCGAAA ACAACCTCTC 120 TAATAATATG TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT 1322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAATATG TACATTTTAC TATTCTCAAA CATCACTCGT GAGACTAAAC TTTCTATATT 180 GTTATCGTCG ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA 1382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATCGTCG ATGTATAGAC GGAACTACAA AATCTTACTT ACGCATTCGA CAAAACTCAA 240 TAACTCGTAA ACTTCGTATT TATATTTTAA AATCAACTAT CCCGTAAAAA CTATAATTTA 1442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTCGTAA ACTTCGTATT TATATTTTAA AATCAACTAT CCCGTAAAAA CTATAATTTA 300 TAAACTTAAA ATTCTAGCTT TGTTCCGCTC TTTTAAATAC ATAATTACCT CAAAATGTAG 1502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACTTAAA ATTCTAGCTT TGTTCCGCTC TTTTAAATAC ATAATTACCT CAAAATGTAG 360 GCAATCACTT TCCCTTACTC GCTTCCACGG AGATGAATTA TCAGCCGCCG TCGCGCCACC 1562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATCACTT TCCCTTACTC GCTTCCACGG AGATGAATTA TCAGCCGCCG TCGCGCCACC 420 GCCGTAATCT CCGATAGCTG ATAAATCTCC ATAACTGCCG GAAGAACTCA CCGAACGCAC 1622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGTAATCT CCGATAGCTG ATAAATCTCC ATAACTGCCG GAAGAACTCA CCGAACGCAC 480 CGGCGACGGC GAGGGAGAGA AATCACTCGA CGGAGAAGAA GATAAAG 1669 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGGCGACGGC GAGGGAGAGA AATCACTCGA CGGAGAAGAA GATAAAG 527 hqPGS_C10SLe0045H11.1+_SGN-E267320- (1143 1669) ******************************************************************************** EST sequence 60 -strand 714 n (File: SGN-E348664-) 1 TATATTTTAN AATCAACTAT CCCCTAAAAA CTATAATTTA TAAACTTAAA ATTCTAGCTN 61 TGTTCCGCTC TTTTAAATAC ATAATTACCT CAAAATGTAG GCAATCACTT TCCCTTACTC 121 GCTTCCACGG AGNATAATTA TCAGCCGCCG TCGCGCCACC GCCGTAATCT CCGATAGCTG 181 ATAAATCTCC ATAACTGCCG GAAGAACTCA CCGAACGCAC CGGCGACGGC GAGGGAGAGA 241 AATCACTCGA CGGAGAAGAA GATAAAGGAA CAACTTGATT CTCATCGTCA TAATCATCGA 301 TTTCACTGTC AGTACTCACG TATTCATCTT CATCATTATC CGCTTCGGTT TGATAATTTT 361 CTTCGATTGT TTCCCCAATT TGTTCAATTG GATCTGGGTT TTGGATGCAG GAATTGCAGA 421 GAGAGAAAGT AGGAGAAAGC TTTGGACCAG AGGCATTCCA TGGAGTTGAA TTTTGACATG 481 AATGACAAAG GAGATTTCTC GAGTGTTTAG CTACGAGAAA ATTAGCAGAA TGAACTTTCG 541 AATCGCAATC CCAGCAAAGG TTAGCTTGAT CTGATTCACA ATACATCATT GATTTGTTCT 601 CACCACATAA CTCACAATTC ATCATCTTCA CTTCTCTTTC TATCAATCAA AAAATTCAAA 661 CAATTTTAGG GTTTTTTTTG AAAGGAATGT TTAAAATTGG GGGTTTTGGA GTTT Predicted gene structure (within gDNA segment 577 to 2716): Exon 1 1403 2116 ( 714 n); cDNA 1 714 ( 714 n); score: 0.992 MATCH C10SLe0045H11.1+ SGN-E348664- 0.992 714 1.000 C PGS_C10SLe0045H11.1+_SGN-E348664- (1403 2116) Alignment (genomic DNA sequence = upper lines): TATATTTTAA AATCAACTAT CCCGTAAAAA CTATAATTTA TAAACTTAAA ATTCTAGCTT 1462 ||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| ||||||||| TATATTTTAN AATCAACTAT CCCCTAAAAA CTATAATTTA TAAACTTAAA ATTCTAGCTN 60 TGTTCCGCTC TTTTAAATAC ATAATTACCT CAAAATGTAG GCAATCACTT TCCCTTACTC 1522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCCGCTC TTTTAAATAC ATAATTACCT CAAAATGTAG GCAATCACTT TCCCTTACTC 120 GCTTCCACGG AGATGAATTA TCAGCCGCCG TCGCGCCACC GCCGTAATCT CCGATAGCTG 1582 |||||||||| || ||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTCCACGG AGNATAATTA TCAGCCGCCG TCGCGCCACC GCCGTAATCT CCGATAGCTG 180 ATAAATCTCC ATAACTGCCG GAAGAACTCA CCGAACGCAC CGGCGACGGC GAGGGAGAGA 1642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAATCTCC ATAACTGCCG GAAGAACTCA CCGAACGCAC CGGCGACGGC GAGGGAGAGA 240 AATCACTCGA CGGAGAAGAA GATAAAGGAA CAACTTGATT CTCATCGTCA TAATCATCGA 1702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCACTCGA CGGAGAAGAA GATAAAGGAA CAACTTGATT CTCATCGTCA TAATCATCGA 300 TTTCACTGTC AGTACTCACG TATTCATCTT CATCATTATC CGCTTCGGTT TGATAATTTT 1762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCACTGTC AGTACTCACG TATTCATCTT CATCATTATC CGCTTCGGTT TGATAATTTT 360 CTTCGATTGT TTCCCCAATT TGTTCAATTG GATCTGGGTT TTGGATGCAG GAATTGCAGA 1822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCGATTGT TTCCCCAATT TGTTCAATTG GATCTGGGTT TTGGATGCAG GAATTGCAGA 420 GAGAGAAAGT AGGAGAAAGC TTTGGACCAG AGGCATTCCA TGGAGTTGAA TTTTGACATG 1882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGAAAGT AGGAGAAAGC TTTGGACCAG AGGCATTCCA TGGAGTTGAA TTTTGACATG 480 AATGACAAAG GAGATTTCTC GAGTGTTTAG CTACGAGAAA ATTAGCAGAA TGAACTTTCG 1942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGACAAAG GAGATTTCTC GAGTGTTTAG CTACGAGAAA ATTAGCAGAA TGAACTTTCG 540 AATCGCAATC CCAGCAAAGG TTAGCTTGAT CTGATTCACA ATACATCATT GATTTGTTCT 2002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCGCAATC CCAGCAAAGG TTAGCTTGAT CTGATTCACA ATACATCATT GATTTGTTCT 600 CACCACATAA CTCACAATTC ATCATCTTCA CTTCTCTTTC TATCAATCAA AAAATTCAAA 2062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCACATAA CTCACAATTC ATCATCTTCA CTTCTCTTTC TATCAATCAA AAAATTCAAA 660 CAATTTTAGG GTTTTTTTTG AAAGGAATGT TTAAAATTGG GGGTTTTGGA GTTT 2116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CAATTTTAGG GTTTTTTTTG AAAGGAATGT TTAAAATTGG GGGTTTTGGA GTTT 714 hqPGS_C10SLe0045H11.1+_SGN-E348664- (1403 2116) ******************************************************************************** EST sequence 143 -strand 421 n (File: SGN-E239508-) 1 GATTCTCATC GTCATAATCA TCGATTTCAC TGTCAGTACT CACGTATTCA TCTTCATCAT 61 TATCCGCTTC GGTTTGATAA TTTTCTTCGA TTGTTTCCCC AATTTGTTCA ATTGGATCTG 121 GGTTTTGGAT GCAGGAATTG CAGAGAGAGA AAGTAGGAGA AAGCTTTGGA CCAGAGGCAT 181 TCCATGGAGT TGAATTTTGA CATGAATGAC AAAGGAGATT TCTCGAGTGT TTAGCTACGA 241 GAAAATTAGC AGAATGAACT TTCGAATCGC AATCCCAGCA AAGGTTAGCT TGATCTGATT 301 CACAATACAT CATTGATTTG TTCTCACCAC ATAACTCACA ATTCATCATC TTCACTTCTC 361 TTTCTATCAA TCAAAAAATT CAAACAATTT TAGGGTTTTT TTTGAAAGGA ATGTTTAAAA 421 T Predicted gene structure (within gDNA segment 1069 to 2699): Exon 1 1679 2099 ( 421 n); cDNA 1 421 ( 421 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E239508- 1.000 421 1.000 C PGS_C10SLe0045H11.1+_SGN-E239508- (1679 2099) Alignment (genomic DNA sequence = upper lines): GATTCTCATC GTCATAATCA TCGATTTCAC TGTCAGTACT CACGTATTCA TCTTCATCAT 1738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCTCATC GTCATAATCA TCGATTTCAC TGTCAGTACT CACGTATTCA TCTTCATCAT 60 TATCCGCTTC GGTTTGATAA TTTTCTTCGA TTGTTTCCCC AATTTGTTCA ATTGGATCTG 1798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCGCTTC GGTTTGATAA TTTTCTTCGA TTGTTTCCCC AATTTGTTCA ATTGGATCTG 120 GGTTTTGGAT GCAGGAATTG CAGAGAGAGA AAGTAGGAGA AAGCTTTGGA CCAGAGGCAT 1858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTTGGAT GCAGGAATTG CAGAGAGAGA AAGTAGGAGA AAGCTTTGGA CCAGAGGCAT 180 TCCATGGAGT TGAATTTTGA CATGAATGAC AAAGGAGATT TCTCGAGTGT TTAGCTACGA 1918 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATGGAGT TGAATTTTGA CATGAATGAC AAAGGAGATT TCTCGAGTGT TTAGCTACGA 240 GAAAATTAGC AGAATGAACT TTCGAATCGC AATCCCAGCA AAGGTTAGCT TGATCTGATT 1978 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATTAGC AGAATGAACT TTCGAATCGC AATCCCAGCA AAGGTTAGCT TGATCTGATT 300 CACAATACAT CATTGATTTG TTCTCACCAC ATAACTCACA ATTCATCATC TTCACTTCTC 2038 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAATACAT CATTGATTTG TTCTCACCAC ATAACTCACA ATTCATCATC TTCACTTCTC 360 TTTCTATCAA TCAAAAAATT CAAACAATTT TAGGGTTTTT TTTGAAAGGA ATGTTTAAAA 2098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTATCAA TCAAAAAATT CAAACAATTT TAGGGTTTTT TTTGAAAGGA ATGTTTAAAA 420 T 2099 | T 421 hqPGS_C10SLe0045H11.1+_SGN-E239508- (1679 2099) ******************************************************************************** EST sequence 54 -strand 235 n (File: SGN-E228039-) 1 GTTGAATTTT GACATGAATG ACAAAGGAGA TTTCTCAAGT GTTTAGCTAC GAGAAAATTA 61 GCAGAATGAA CTTTCGAATC GCAATCCCAG CAAAGGTTAG CTTGATATGA TTCACAATAC 121 ATCATTGATT TGTTCTCACC ACATAACTCA CAATTCATCA TATTCACTTC TCTTTCTATC 181 AATCAAAAAA TTCAAACAAT TTTAGGGTTT TTTTTGAAAG AAAAGTTTAA AATTG Predicted gene structure (within gDNA segment 1257 to 2836): Exon 1 1867 2101 ( 235 n); cDNA 1 235 ( 235 n); score: 0.979 MATCH C10SLe0045H11.1+ SGN-E228039- 0.979 235 1.000 C PGS_C10SLe0045H11.1+_SGN-E228039- (1867 2101) Alignment (genomic DNA sequence = upper lines): GTTGAATTTT GACATGAATG ACAAAGGAGA TTTCTCGAGT GTTTAGCTAC GAGAAAATTA 1926 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| GTTGAATTTT GACATGAATG ACAAAGGAGA TTTCTCAAGT GTTTAGCTAC GAGAAAATTA 60 GCAGAATGAA CTTTCGAATC GCAATCCCAG CAAAGGTTAG CTTGATCTGA TTCACAATAC 1986 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| GCAGAATGAA CTTTCGAATC GCAATCCCAG CAAAGGTTAG CTTGATATGA TTCACAATAC 120 ATCATTGATT TGTTCTCACC ACATAACTCA CAATTCATCA TCTTCACTTC TCTTTCTATC 2046 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| ATCATTGATT TGTTCTCACC ACATAACTCA CAATTCATCA TATTCACTTC TCTTTCTATC 180 AATCAAAAAA TTCAAACAAT TTTAGGGTTT TTTTTGAAAG GAATGTTTAA AATTG 2101 |||||||||| |||||||||| |||||||||| |||||||||| || |||||| ||||| AATCAAAAAA TTCAAACAAT TTTAGGGTTT TTTTTGAAAG AAAAGTTTAA AATTG 235 hqPGS_C10SLe0045H11.1+_SGN-E228039- (1867 2101) ******************************************************************************** EST sequence 135 -strand 179 n (File: SGN-E236252-) 1 TTAGCAGAAT GAACTTTCGA ATGGCAATCC CAGCAAAGGT TAGCTTGATC TGATTCACAA 61 TACATCATTG ATTTGTTCTC ACCACATAAC TCACAATTCA TCATCTTCAC TTCTCTTTCT 121 ATCAATCAAA AAATTCAAAC AATTTTAGGG TTTAAATTTG AAAGAAATGT TTAAAATTG Predicted gene structure (within gDNA segment 1314 to 2936): Exon 1 1924 2101 ( 178 n); cDNA 1 179 ( 179 n); score: 0.963 MATCH C10SLe0045H11.1+ SGN-E236252- 0.963 178 0.994 C PGS_C10SLe0045H11.1+_SGN-E236252- (1924 2101) Alignment (genomic DNA sequence = upper lines): TTAGCAGAAT GAACTTTCGA ATCGCAATCC CAGCAAAGGT TAGCTTGATC TGATTCACAA 1983 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| TTAGCAGAAT GAACTTTCGA ATGGCAATCC CAGCAAAGGT TAGCTTGATC TGATTCACAA 60 TACATCATTG ATTTGTTCTC ACCACATAAC TCACAATTCA TCATCTTCAC TTCTCTTTCT 2043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATCATTG ATTTGTTCTC ACCACATAAC TCACAATTCA TCATCTTCAC TTCTCTTTCT 120 ATCAATCAAA AAATTCAAAC AATTTTAGGG TTT-TTTTTG AAAGGAATGT TTAAAATTG 2101 |||||||||| |||||||||| |||||||||| ||| |||| |||| ||||| ||||||||| ATCAATCAAA AAATTCAAAC AATTTTAGGG TTTAAATTTG AAAGAAATGT TTAAAATTG 179 hqPGS_C10SLe0045H11.1+_SGN-E236252- (1924 2101) ******************************************************************************** EST sequence 154 -strand 539 n (File: SGN-E323373-) 1 GTGTAAATGT GTCGTTGGTA TCTAACATGT TGTCAATAAG TCATTGAAGT CGATACAACC 61 GTTATGTTCC TTCCTCTCAT TCTTACAGCA AATGTAGCCA CGTACCACCT ATTCTAATCG 121 CTCCATCCCT TGTTACTGGT ATCACTTCAT CGATAGAGAC GTCAACACCA GCATCCTTTT 181 TCACTGTCCA ACGAGTATTC TCTCTGACAC TCCAATAAGC ACTAACATGC TAATTTATTC 241 GACATTCTCC ATGTCAAAGT TAAAAGCAGC AGTTGAAATG ATGTACGGAT TCTGCCATAT 301 TGCCCAATGT CCTCCCTTGA GATGAATTCT TTAAAAGCAT CTTCAATGCG CCGCCGACGG 361 CCGGTAAAAA AAAATACAGA CTGACCGGAG CACCAGCGCC GACGGCCGGC AAAAAAATTT 421 GGACCATTTC TCGATTTGTG CGTGTCATCC TTGCGCAGGG GCCATGCTAA TCTTATCTGT 481 CCCGTTCCAA TTTTATCGGA TGTCCCCGAA GGGACGAACC CCATTGCCTC GATACATTT Predicted gene structure (within gDNA segment 852 to 6929): Exon 1 5893 5979 ( 87 n); cDNA 418 504 ( 87 n); score: 0.908 MATCH C10SLe0045H11.1+ SGN-E323373- 0.908 87 0.161 C PGS_C10SLe0045H11.1+_SGN-E323373- (5893 5979) Alignment (genomic DNA sequence = upper lines): TTTTGACCAA TTCTCGATTT GTGCGGATTA TCCTTGCGCA GGGGCCATGC TAATCTTCTC 5952 ||| ||||| |||||||||| ||||| | | |||||||||| |||||||||| ||||||| || TTTGGACCAT TTCTCGATTT GTGCGTGTCA TCCTTGCGCA GGGGCCATGC TAATCTTATC 477 TGTATCGTTC CAATTTTATC GGATGTC 5979 ||| ||||| |||||||||| ||||||| TGTCCCGTTC CAATTTTATC GGATGTC 504 hqPGS_C10SLe0045H11.1+_SGN-E323373- (5893 5979) ******************************************************************************** EST sequence 2 -strand 549 n (File: SGN-E391964-) 1 TTAAGAGGGG AAATGATGGG AGGCTTGGAA GTGTTAGTGA TTACTGTGTT AGGCATTGTG 61 TTTGCCCTGT CGTGGTTGCG AGGTATCCTG ATGAGAAGGA TGGTGGAAAT GCTGCTCGTA 121 AGGGCGGAGT TCCTGTGGCA TCTGCCTCAA AAGAAAACGA GGAGGAAGGC GAGTACCATG 181 ATGCTTGTGA TGGTCGTCAA GGATCACAAC CAGCCATAGG AAAAGGCTCG AGAACTGACA 241 ATTGACTTAG AGTTGCTTAA GAAGTCCTTT GAAGAGACAG TGAACGTAAG ATTCCAGGTG 301 CGGAAGTTGG GTTAAGCAAT CCTTTTAGCC GACTTATGTG AAAACCACTT GGTATTTTGT 361 TATATCCGGA GTCTCATCTT CTTTAACTGA ATTGTGGTTT CCTGTCTTTC AGTTTAGTTT 421 ACAGTAGTTC GCTAGATGAT GTTGTATCTC TAAAGATTGT TGTCTTCATA GAGTTTCACT 481 TAAACCTGCC CCTTTTTATC ACTTCTTATC TTTATGGTGC AAATATAAAA TCTTACTTTA 541 AAAAAAAAA Predicted gene structure (within gDNA segment 9432 to 5712): Exon 1 8749 8550 ( 200 n); cDNA 2 201 ( 200 n); score: 0.985 Intron 1 8549 8028 ( 522 n); Pd: 0.999 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 2 8027 7939 ( 89 n); cDNA 202 290 ( 89 n); score: 1.000 Intron 2 7938 6661 (1278 n); Pd: 0.995 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 3 6660 6402 ( 259 n); cDNA 291 549 ( 259 n); score: 0.981 MATCH C10SLe0045H11.1- SGN-E391964- 0.985 548 0.998 C PGS_C10SLe0045H11.1-_SGN-E391964- (8749 8550,8027 7939,6660 6402) Alignment (genomic DNA sequence = upper lines): TAAGAGAGGA AATGATGGGA GGCTTGGAAG TGTTAGTGAT TACTGTGTTA GGCATTGTGT 8690 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGAGGGGA AATGATGGGA GGCTTGGAAG TGTTAGTGAT TACTGTGTTA GGCATTGTGT 61 TTGCCCTGTT GTGGTTGTGA GGTATCCTGA TGAGAAGGAT GGTGGAAATG CTGCTCGTAA 8630 ||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TTGCCCTGTC GTGGTTGCGA GGTATCCTGA TGAGAAGGAT GGTGGAAATG CTGCTCGTAA 121 GGGCGGAGTT CCTGTGGCAT CTGCCTCAAA AGAAAACGAG GAGGAAGGCG AGTACCATGA 8570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCGGAGTT CCTGTGGCAT CTGCCTCAAA AGAAAACGAG GAGGAAGGCG AGTACCATGA 181 TGCTTGTGAT GGTCGTCAAG GTATGTGCAA AATTCATCCT AATGTTTGCT TAGTTATTTT 8510 |||||||||| |||||||||| TGCTTGTGAT GGTCGTCAAG .......... .......... .......... .......... 201 CGGGTCTTTA TATGTAAATT TATGCAATTT GCTGCTGGTT ATCAGTTTGT TCCATTTTCT 8450 .......... .......... .......... .......... .......... .......... 201 AATTGAAATG AAAGACCCTT TCATGTTTTA TAATGTAAAA TGTGGCACAC TGCTGTCAAC 8390 .......... .......... .......... .......... .......... .......... 201 TCTGTGATTT GGCTGTGTGT TATACCAAAA GGAAAATTAG GTGGGTACTC CCCAAAATAG 8330 .......... .......... .......... .......... .......... .......... 201 TCACATTCAA GAAAGGTAAT GCCTGTTACA GTTTATGCAT ATGATTTTGA CATGCAATAG 8270 .......... .......... .......... .......... .......... .......... 201 AGTGCAGGAA ATCCGTGATA CTTGTAACAA TTATGATATG TTTGGCAACA ATATCGTTAG 8210 .......... .......... .......... .......... .......... .......... 201 AGTATATAGC TTTAAAAGTT CCAAAATGTG AGTGCATTTT TGGAAAATGG AATAAATGAC 8150 .......... .......... .......... .......... .......... .......... 201 TCGTGTTGAA ATGGGAACTT GAACTGAAGC ACCCTCTTGA AAACTTAGTA TTACAATGCT 8090 .......... .......... .......... .......... .......... .......... 201 CAAACATGTG TTCTGAATCC TGAGGTCAAT TTTGTTTTAA ATTGTCATTC TCCATGAAGC 8030 .......... .......... .......... .......... .......... .......... 201 AGGATCACAA CCAGCCATAG GAAAAGGCTC GAGAACTGAC AATTGACTTA GAGTTGCTTA 7970 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GATCACAA CCAGCCATAG GAAAAGGCTC GAGAACTGAC AATTGACTTA GAGTTGCTTA 259 AGAAGTCCTT TGAAGAGACA GTGAACGTAA GGTACAGTCA TTACATTCAT CTTAAAGTTC 7910 |||||||||| |||||||||| |||||||||| | AGAAGTCCTT TGAAGAGACA GTGAACGTAA G......... .......... .......... 290 ATTACTTTAG TCTTTAGATT ATTAAACATT GTACTTTTGA TGCTTGCGCC ACTTACAAAT 7850 .......... .......... .......... .......... .......... .......... 290 GATAGTTGTA TTGCTTAGGA GTAGAATTTA GGGCATGATT CATTTTTGGG GCCTATCTCT 7790 .......... .......... .......... .......... .......... .......... 290 TTTTGTATGA GACAGTAAGG TTCTTGTTCA GTTACTTTTT ACTCTTAAAC ATAAGTTTGT 7730 .......... .......... .......... .......... .......... .......... 290 AAGAGGACTA CAATTAGATG AAAGTTACAC ATATTTTCCC ATTTGTTTTT TTATTATTGT 7670 .......... .......... .......... .......... .......... .......... 290 TTCTCCCTTA TTACCAAAAA AAACTTTCTT CCTATAAATA ATTTAATTTG GCACCCTAGT 7610 .......... .......... .......... .......... .......... .......... 290 GGCTGCTTCT GGTTTTAACA GTTAATGGAG TAGCTTTCTT AGGACTAGGT TGTGTGCTCC 7550 .......... .......... .......... .......... .......... .......... 290 ACCCTTGTAA CCTGTAATAA GCTAAATGCT TCCTTGGTCA ATGGATGAGA CTATCAACCA 7490 .......... .......... .......... .......... .......... .......... 290 TGGTTTCCAT GACAGATTTG AGGAAGATGT AATTTGTTGA TAGCTATCTT TGTTGTGAAA 7430 .......... .......... .......... .......... .......... .......... 290 GTTTCACTTT GGGAGAAAAT AAAACATTGT ATGATGTTGA AATAACAATT TTGACTAAGG 7370 .......... .......... .......... .......... .......... .......... 290 AAACCGTAGC TCAACCTTGA ACCAATTCAT TTTGAGTTCC CAATTTTTGA ACTTTAGGTC 7310 .......... .......... .......... .......... .......... .......... 290 TTATGGAATT TTTCTAGTGT TCTCCTAAGC TTGATTTGCC TTTTGAATTG GTGGTTCGAT 7250 .......... .......... .......... .......... .......... .......... 290 GTTTATGAAA TGCAGTTTAG CCACTATAAA TTGGTTTTTT AGATTTGTGG GTGAACTGTG 7190 .......... .......... .......... .......... .......... .......... 290 AAGTCAAATC AACTTTGTGA TGTCACCAAA GATTAGATAA ATGAGCCATG AATCATTTCT 7130 .......... .......... .......... .......... .......... .......... 290 CTTCACTGAG ATTTTTTTCA GGGCACATTG TGAAAGATTT TGGAGGAAAA CAAACAATTC 7070 .......... .......... .......... .......... .......... .......... 290 AAAATATCTA GGTTCGACGT TCCTGGAGAG TCAAATGATA TATGAATATG TTACACAAAA 7010 .......... .......... .......... .......... .......... .......... 290 TCTATTTTGG ATGAATGGAA TAATAAACAA AGATTGTTAT ACATAAAATC AAATTGGATG 6950 .......... .......... .......... .......... .......... .......... 290 GTTGAGATGT CAAAAAGGCC TTTCCTTTAT CCAAGAGATA GTAGGTCTTT CAAGACAATT 6890 .......... .......... .......... .......... .......... .......... 290 TGGTTTTGTC TGTGCAGATC GCATGAGAGA GTTGCAAACC AGTGCAACCA AGTAGCTATG 6830 .......... .......... .......... .......... .......... .......... 290 TCTTGATATC TTATGAGTTA TGCAATTAAT ATTCTAGCTG TGTCATGCAT TATACATTTG 6770 .......... .......... .......... .......... .......... .......... 290 AACCTTGTTT TTAAATCAAT CCTCTACTCC CTTCCCTATC GACTCTATGG TTATTTGATG 6710 .......... .......... .......... .......... .......... .......... 290 GTTCTCTTTG TTAACTGGGA CTTTGATACT CCCGCTTCTT TGGTGACAGA TTCCAGGTGC 6650 | |||||||||| .......... .......... .......... .......... .........A TTCCAGGTGC 301 GGAAGTTGGG TTAAGCAATC CTTTTAGCCG ACTTATGTGA AAACCACTTG GTATTTTGTT 6590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGTTGGG TTAAGCAATC CTTTTAGCCG ACTTATGTGA AAACCACTTG GTATTTTGTT 361 ATATCCGGAG TCTCATCTTC TTTAACTGAA TTGTGGTTTC CTGTCTTTCA GTTTAGTTTA 6530 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCCGGAG TCTCATCTTC TTTAACTGAA TTGTGGTTTC CTGTCTTTCA GTTTAGTTTA 421 CAGTAGTTCG CTAGATGATG TTGTATCTCT AAAGATTGTT GTCTTCATAG AGTTTCACTT 6470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTAGTTCG CTAGATGATG TTGTATCTCT AAAGATTGTT GTCTTCATAG AGTTTCACTT 481 AAACCTGCCC CTTTTTATCA CTTCTTATCT TTATGGTGCA AATATAAAAT CTTACTTTTA 6410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | AAACCTGCCC CTTTTTATCA CTTCTTATCT TTATGGTGCA AATATAAAAT CTTACTTTAA 541 AGATGTAA 6402 | | || AAAAAAAA 549 hqPGS_C10SLe0045H11.1-_SGN-E391964- (8749 8550,8027 7939,6660 6402) ******************************************************************************** EST sequence 130 +strand 762 n (File: SGN-E257428+) 1 CCTTTCATGT TTTATAATGT AAAATGTGGC ACACTGCTGT CAACTCTGTG ATTTGGCTGT 61 GTGTTATACC AAAAGGAAAA TTAGGTGGGT ACTCCCCAAA ATAGTCACAT TCAAGAAAGG 121 TAATGCCTGT TACAGTTTAT GCATATGATT TTGACATGCA ATAGAGTGCA GGAAATCCGT 181 GATACTTGTA ACAATTATGA TATGTTTGGC AACAATATCG TTAGAGTATA TAGCTTTAAA 241 AGTTCCAAAA TGTGAGTGCA TTTTTGGAAA ATGGAATAAA TGACTCGTGT TGAAATGGGA 301 ACTTGAACTG AAGCACCCTC TTGAAAACTT AGTATTACAA TGCTCAAACA TGTGTTCTGA 361 ATCCTGAGGT CAATTTTGTT TTAAATTGTC ATTCTCCATG AAGCAGGATC ACAACCAGCC 421 ATAGGAAAAG GCTCGAGAAC TGACAATTGA CTTAGAGTTG CTTAAGAAGT CCTTTGAAGA 481 GACAGTGAAC GTAAGATTCC AGGTGCGGAA GTTGGGTTAA GCAATCCTTT TAGCCGACTT 541 ATGTGAAAAC CACTTGGTAT TTTGTTATAT CCGGAGTCTC ATCTTCTTTA ACTGAATTGT 601 GGTTTCCTGT CTTTCAGTTT AGTTTACAGT AGTTCGCTAG ATGATGTTGT ATCTCTAAAG 661 ATTGTTGTCT TCATAGAGTT TCACTTAAAC CTGCCCCTTT TTATCACTTC TTATCTTTAT 721 GGTGCAAATA TAAAATCTTA CTTTTTAGAT GTAAAAAAAA AA Predicted gene structure (within gDNA segment 9033 to 5631): Exon 1 8433 7939 ( 495 n); cDNA 1 495 ( 495 n); score: 1.000 Intron 1 7938 6661 (1278 n); Pd: 0.995 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 2 6660 6402 ( 259 n); cDNA 496 754 ( 259 n); score: 0.996 MATCH C10SLe0045H11.1- SGN-E257428+ 0.999 754 0.990 C PGS_C10SLe0045H11.1-_SGN-E257428+ (8433 7939,6660 6402) Alignment (genomic DNA sequence = upper lines): CCTTTCATGT TTTATAATGT AAAATGTGGC ACACTGCTGT CAACTCTGTG ATTTGGCTGT 8374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTCATGT TTTATAATGT AAAATGTGGC ACACTGCTGT CAACTCTGTG ATTTGGCTGT 60 GTGTTATACC AAAAGGAAAA TTAGGTGGGT ACTCCCCAAA ATAGTCACAT TCAAGAAAGG 8314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTATACC AAAAGGAAAA TTAGGTGGGT ACTCCCCAAA ATAGTCACAT TCAAGAAAGG 120 TAATGCCTGT TACAGTTTAT GCATATGATT TTGACATGCA ATAGAGTGCA GGAAATCCGT 8254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGCCTGT TACAGTTTAT GCATATGATT TTGACATGCA ATAGAGTGCA GGAAATCCGT 180 GATACTTGTA ACAATTATGA TATGTTTGGC AACAATATCG TTAGAGTATA TAGCTTTAAA 8194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATACTTGTA ACAATTATGA TATGTTTGGC AACAATATCG TTAGAGTATA TAGCTTTAAA 240 AGTTCCAAAA TGTGAGTGCA TTTTTGGAAA ATGGAATAAA TGACTCGTGT TGAAATGGGA 8134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCCAAAA TGTGAGTGCA TTTTTGGAAA ATGGAATAAA TGACTCGTGT TGAAATGGGA 300 ACTTGAACTG AAGCACCCTC TTGAAAACTT AGTATTACAA TGCTCAAACA TGTGTTCTGA 8074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTGAACTG AAGCACCCTC TTGAAAACTT AGTATTACAA TGCTCAAACA TGTGTTCTGA 360 ATCCTGAGGT CAATTTTGTT TTAAATTGTC ATTCTCCATG AAGCAGGATC ACAACCAGCC 8014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTGAGGT CAATTTTGTT TTAAATTGTC ATTCTCCATG AAGCAGGATC ACAACCAGCC 420 ATAGGAAAAG GCTCGAGAAC TGACAATTGA CTTAGAGTTG CTTAAGAAGT CCTTTGAAGA 7954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGGAAAAG GCTCGAGAAC TGACAATTGA CTTAGAGTTG CTTAAGAAGT CCTTTGAAGA 480 GACAGTGAAC GTAAGGTACA GTCATTACAT TCATCTTAAA GTTCATTACT TTAGTCTTTA 7894 |||||||||| ||||| GACAGTGAAC GTAAG..... .......... .......... .......... .......... 495 GATTATTAAA CATTGTACTT TTGATGCTTG CGCCACTTAC AAATGATAGT TGTATTGCTT 7834 .......... .......... .......... .......... .......... .......... 495 AGGAGTAGAA TTTAGGGCAT GATTCATTTT TGGGGCCTAT CTCTTTTTGT ATGAGACAGT 7774 .......... .......... .......... .......... .......... .......... 495 AAGGTTCTTG TTCAGTTACT TTTTACTCTT AAACATAAGT TTGTAAGAGG ACTACAATTA 7714 .......... .......... .......... .......... .......... .......... 495 GATGAAAGTT ACACATATTT TCCCATTTGT TTTTTTATTA TTGTTTCTCC CTTATTACCA 7654 .......... .......... .......... .......... .......... .......... 495 AAAAAAACTT TCTTCCTATA AATAATTTAA TTTGGCACCC TAGTGGCTGC TTCTGGTTTT 7594 .......... .......... .......... .......... .......... .......... 495 AACAGTTAAT GGAGTAGCTT TCTTAGGACT AGGTTGTGTG CTCCACCCTT GTAACCTGTA 7534 .......... .......... .......... .......... .......... .......... 495 ATAAGCTAAA TGCTTCCTTG GTCAATGGAT GAGACTATCA ACCATGGTTT CCATGACAGA 7474 .......... .......... .......... .......... .......... .......... 495 TTTGAGGAAG ATGTAATTTG TTGATAGCTA TCTTTGTTGT GAAAGTTTCA CTTTGGGAGA 7414 .......... .......... .......... .......... .......... .......... 495 AAATAAAACA TTGTATGATG TTGAAATAAC AATTTTGACT AAGGAAACCG TAGCTCAACC 7354 .......... .......... .......... .......... .......... .......... 495 TTGAACCAAT TCATTTTGAG TTCCCAATTT TTGAACTTTA GGTCTTATGG AATTTTTCTA 7294 .......... .......... .......... .......... .......... .......... 495 GTGTTCTCCT AAGCTTGATT TGCCTTTTGA ATTGGTGGTT CGATGTTTAT GAAATGCAGT 7234 .......... .......... .......... .......... .......... .......... 495 TTAGCCACTA TAAATTGGTT TTTTAGATTT GTGGGTGAAC TGTGAAGTCA AATCAACTTT 7174 .......... .......... .......... .......... .......... .......... 495 GTGATGTCAC CAAAGATTAG ATAAATGAGC CATGAATCAT TTCTCTTCAC TGAGATTTTT 7114 .......... .......... .......... .......... .......... .......... 495 TTCAGGGCAC ATTGTGAAAG ATTTTGGAGG AAAACAAACA ATTCAAAATA TCTAGGTTCG 7054 .......... .......... .......... .......... .......... .......... 495 ACGTTCCTGG AGAGTCAAAT GATATATGAA TATGTTACAC AAAATCTATT TTGGATGAAT 6994 .......... .......... .......... .......... .......... .......... 495 GGAATAATAA ACAAAGATTG TTATACATAA AATCAAATTG GATGGTTGAG ATGTCAAAAA 6934 .......... .......... .......... .......... .......... .......... 495 GGCCTTTCCT TTATCCAAGA GATAGTAGGT CTTTCAAGAC AATTTGGTTT TGTCTGTGCA 6874 .......... .......... .......... .......... .......... .......... 495 GATCGCATGA GAGAGTTGCA AACCAGTGCA ACCAAGTAGC TATGTCTTGA TATCTTATGA 6814 .......... .......... .......... .......... .......... .......... 495 GTTATGCAAT TAATATTCTA GCTGTGTCAT GCATTATACA TTTGAACCTT GTTTTTAAAT 6754 .......... .......... .......... .......... .......... .......... 495 CAATCCTCTA CTCCCTTCCC TATCGACTCT ATGGTTATTT GATGGTTCTC TTTGTTAACT 6694 .......... .......... .......... .......... .......... .......... 495 GGGACTTTGA TACTCCCGCT TCTTTGGTGA CAGATTCCAG GTGCGGAAGT TGGGTTAAGC 6634 ||||||| |||||||||| |||||||||| .......... .......... .......... ...ATTCCAG GTGCGGAAGT TGGGTTAAGC 522 AATCCTTTTA GCCGACTTAT GTGAAAACCA CTTGGTATTT TGTTATATCC GGAGTCTCAT 6574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCTTTTA GCCGACTTAT GTGAAAACCA CTTGGTATTT TGTTATATCC GGAGTCTCAT 582 CTTCTTTAAC TGAATTGTGG TTTCCTGTCT TTCAGTTTAG TTTACAGTAG TTCGCTAGAT 6514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTTTAAC TGAATTGTGG TTTCCTGTCT TTCAGTTTAG TTTACAGTAG TTCGCTAGAT 642 GATGTTGTAT CTCTAAAGAT TGTTGTCTTC ATAGAGTTTC ACTTAAACCT GCCCCTTTTT 6454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTTGTAT CTCTAAAGAT TGTTGTCTTC ATAGAGTTTC ACTTAAACCT GCCCCTTTTT 702 ATCACTTCTT ATCTTTATGG TGCAAATATA AAATCTTACT TTTAAGATGT AA 6402 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| || ATCACTTCTT ATCTTTATGG TGCAAATATA AAATCTTACT TTTTAGATGT AA 754 hqPGS_C10SLe0045H11.1-_SGN-E257428+ (8433 7939,6660 6402) ******************************************************************************** EST sequence 41 -strand 762 n (File: SGN-E257429-) 1 CTTTCATGTT TTATAATGTA AAATGTGGCA CACTGCTGTC AACTCTGTGA TTTGGCTGTG 61 TGTTATACCA AAAGGAAAAT TAGGTGGGTA CTCCCCAAAA TAGTCACATT CAAGAAAGGT 121 AATGCCTGTT ACAGTTTATG CATATGATTT TGACATGCAA TAGAGTGCAG GAAATCCGTG 181 ATACTTGTAA CAATTATGAT ATGTTTGGCA ACAATATCGT TAGAGTATAT AGCTTTAAAA 241 GTTCCAAAAT GTGAGTGCAT TTTTGGAAAA TGGAATAAAT GACTCGTGTT GAAATGGGAA 301 CTTGAACTGA AGCACCCTCT TGAAAACTTA GTATTACAAT GCTCAAACAT GTGTTCTGAA 361 TCCTGAGGTC AATTTTGTTT TAAATTGTCA TTCTCCATGA AGCAGGATCA CAACCAGCCA 421 TAGGAAAAGG CTCGAGAACT GACAATTGAC TTAGAGTTGC TTAAGAAGTC CTTTGAAGAG 481 ACAGTGAACG TAAGATTCCA GGTGCGGAAG TTGGGTTAAG CAATCCTTTT AGCCGACTTA 541 TGTGAAAACC ACTTGGTATT TTGTTATATC CGGAGTCTCA TCTTCTTTAA CTGAATTGTG 601 GTTTCCTGTC TTTCAGTTTA GTTTACAGTA GTTCGCTAGA TGATGTTGTA TCTCTAAAGA 661 TTGTTGTCTT CATAGAGTTT CACTTAAACC TGCCCCTTTT TATCACTTCT TATCTTTATG 721 GTGCAAATAT AAAATCTTAC TTTTAAGATG TAAAAAAAAA AA Predicted gene structure (within gDNA segment 9042 to 5712): Exon 1 8432 7939 ( 494 n); cDNA 1 494 ( 494 n); score: 1.000 Intron 1 7938 6661 (1278 n); Pd: 0.995 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 2 6660 6403 ( 258 n); cDNA 495 752 ( 258 n); score: 1.000 PPA cDNA 753 762 MATCH C10SLe0045H11.1- SGN-E257429- 1.000 752 0.987 C PGS_C10SLe0045H11.1-_SGN-E257429- (8432 7939,6660 6403) Alignment (genomic DNA sequence = upper lines): CTTTCATGTT TTATAATGTA AAATGTGGCA CACTGCTGTC AACTCTGTGA TTTGGCTGTG 8373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCATGTT TTATAATGTA AAATGTGGCA CACTGCTGTC AACTCTGTGA TTTGGCTGTG 60 TGTTATACCA AAAGGAAAAT TAGGTGGGTA CTCCCCAAAA TAGTCACATT CAAGAAAGGT 8313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTATACCA AAAGGAAAAT TAGGTGGGTA CTCCCCAAAA TAGTCACATT CAAGAAAGGT 120 AATGCCTGTT ACAGTTTATG CATATGATTT TGACATGCAA TAGAGTGCAG GAAATCCGTG 8253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGCCTGTT ACAGTTTATG CATATGATTT TGACATGCAA TAGAGTGCAG GAAATCCGTG 180 ATACTTGTAA CAATTATGAT ATGTTTGGCA ACAATATCGT TAGAGTATAT AGCTTTAAAA 8193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTTGTAA CAATTATGAT ATGTTTGGCA ACAATATCGT TAGAGTATAT AGCTTTAAAA 240 GTTCCAAAAT GTGAGTGCAT TTTTGGAAAA TGGAATAAAT GACTCGTGTT GAAATGGGAA 8133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCCAAAAT GTGAGTGCAT TTTTGGAAAA TGGAATAAAT GACTCGTGTT GAAATGGGAA 300 CTTGAACTGA AGCACCCTCT TGAAAACTTA GTATTACAAT GCTCAAACAT GTGTTCTGAA 8073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGAACTGA AGCACCCTCT TGAAAACTTA GTATTACAAT GCTCAAACAT GTGTTCTGAA 360 TCCTGAGGTC AATTTTGTTT TAAATTGTCA TTCTCCATGA AGCAGGATCA CAACCAGCCA 8013 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTGAGGTC AATTTTGTTT TAAATTGTCA TTCTCCATGA AGCAGGATCA CAACCAGCCA 420 TAGGAAAAGG CTCGAGAACT GACAATTGAC TTAGAGTTGC TTAAGAAGTC CTTTGAAGAG 7953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGAAAAGG CTCGAGAACT GACAATTGAC TTAGAGTTGC TTAAGAAGTC CTTTGAAGAG 480 ACAGTGAACG TAAGGTACAG TCATTACATT CATCTTAAAG TTCATTACTT TAGTCTTTAG 7893 |||||||||| |||| ACAGTGAACG TAAG...... .......... .......... .......... .......... 494 ATTATTAAAC ATTGTACTTT TGATGCTTGC GCCACTTACA AATGATAGTT GTATTGCTTA 7833 .......... .......... .......... .......... .......... .......... 494 GGAGTAGAAT TTAGGGCATG ATTCATTTTT GGGGCCTATC TCTTTTTGTA TGAGACAGTA 7773 .......... .......... .......... .......... .......... .......... 494 AGGTTCTTGT TCAGTTACTT TTTACTCTTA AACATAAGTT TGTAAGAGGA CTACAATTAG 7713 .......... .......... .......... .......... .......... .......... 494 ATGAAAGTTA CACATATTTT CCCATTTGTT TTTTTATTAT TGTTTCTCCC TTATTACCAA 7653 .......... .......... .......... .......... .......... .......... 494 AAAAAACTTT CTTCCTATAA ATAATTTAAT TTGGCACCCT AGTGGCTGCT TCTGGTTTTA 7593 .......... .......... .......... .......... .......... .......... 494 ACAGTTAATG GAGTAGCTTT CTTAGGACTA GGTTGTGTGC TCCACCCTTG TAACCTGTAA 7533 .......... .......... .......... .......... .......... .......... 494 TAAGCTAAAT GCTTCCTTGG TCAATGGATG AGACTATCAA CCATGGTTTC CATGACAGAT 7473 .......... .......... .......... .......... .......... .......... 494 TTGAGGAAGA TGTAATTTGT TGATAGCTAT CTTTGTTGTG AAAGTTTCAC TTTGGGAGAA 7413 .......... .......... .......... .......... .......... .......... 494 AATAAAACAT TGTATGATGT TGAAATAACA ATTTTGACTA AGGAAACCGT AGCTCAACCT 7353 .......... .......... .......... .......... .......... .......... 494 TGAACCAATT CATTTTGAGT TCCCAATTTT TGAACTTTAG GTCTTATGGA ATTTTTCTAG 7293 .......... .......... .......... .......... .......... .......... 494 TGTTCTCCTA AGCTTGATTT GCCTTTTGAA TTGGTGGTTC GATGTTTATG AAATGCAGTT 7233 .......... .......... .......... .......... .......... .......... 494 TAGCCACTAT AAATTGGTTT TTTAGATTTG TGGGTGAACT GTGAAGTCAA ATCAACTTTG 7173 .......... .......... .......... .......... .......... .......... 494 TGATGTCACC AAAGATTAGA TAAATGAGCC ATGAATCATT TCTCTTCACT GAGATTTTTT 7113 .......... .......... .......... .......... .......... .......... 494 TCAGGGCACA TTGTGAAAGA TTTTGGAGGA AAACAAACAA TTCAAAATAT CTAGGTTCGA 7053 .......... .......... .......... .......... .......... .......... 494 CGTTCCTGGA GAGTCAAATG ATATATGAAT ATGTTACACA AAATCTATTT TGGATGAATG 6993 .......... .......... .......... .......... .......... .......... 494 GAATAATAAA CAAAGATTGT TATACATAAA ATCAAATTGG ATGGTTGAGA TGTCAAAAAG 6933 .......... .......... .......... .......... .......... .......... 494 GCCTTTCCTT TATCCAAGAG ATAGTAGGTC TTTCAAGACA ATTTGGTTTT GTCTGTGCAG 6873 .......... .......... .......... .......... .......... .......... 494 ATCGCATGAG AGAGTTGCAA ACCAGTGCAA CCAAGTAGCT ATGTCTTGAT ATCTTATGAG 6813 .......... .......... .......... .......... .......... .......... 494 TTATGCAATT AATATTCTAG CTGTGTCATG CATTATACAT TTGAACCTTG TTTTTAAATC 6753 .......... .......... .......... .......... .......... .......... 494 AATCCTCTAC TCCCTTCCCT ATCGACTCTA TGGTTATTTG ATGGTTCTCT TTGTTAACTG 6693 .......... .......... .......... .......... .......... .......... 494 GGACTTTGAT ACTCCCGCTT CTTTGGTGAC AGATTCCAGG TGCGGAAGTT GGGTTAAGCA 6633 |||||||| |||||||||| |||||||||| .......... .......... .......... ..ATTCCAGG TGCGGAAGTT GGGTTAAGCA 522 ATCCTTTTAG CCGACTTATG TGAAAACCAC TTGGTATTTT GTTATATCCG GAGTCTCATC 6573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTTTTAG CCGACTTATG TGAAAACCAC TTGGTATTTT GTTATATCCG GAGTCTCATC 582 TTCTTTAACT GAATTGTGGT TTCCTGTCTT TCAGTTTAGT TTACAGTAGT TCGCTAGATG 6513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTAACT GAATTGTGGT TTCCTGTCTT TCAGTTTAGT TTACAGTAGT TCGCTAGATG 642 ATGTTGTATC TCTAAAGATT GTTGTCTTCA TAGAGTTTCA CTTAAACCTG CCCCTTTTTA 6453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTGTATC TCTAAAGATT GTTGTCTTCA TAGAGTTTCA CTTAAACCTG CCCCTTTTTA 702 TCACTTCTTA TCTTTATGGT GCAAATATAA AATCTTACTT TTAAGATGTA 6403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACTTCTTA TCTTTATGGT GCAAATATAA AATCTTACTT TTAAGATGTA 752 hqPGS_C10SLe0045H11.1-_SGN-E257429- (8432 7939,6660 6403) ******************************************************************************** EST sequence 133 +strand 391 n (File: SGN-E287049+) 1 TTTGCCCTGT TGTGGTTGTG AGGTATCCTG ATGAGAAGGA TGGTGGAAAT GCTGCTCGTA 61 AGGGCGGAGT TCCTGTGGCA TCTGCCTCAA AAGAAAACGA GGAGGAAGGC GAGTACCATG 121 ATGCTTGTGA TGGTCGTCAA GGATCACAAC CAGCCATAGG AAAAGGCTCG AGAACTGACA 181 ATTGACTTAG AGTTGCTTAA GAAGTCCTTT GAAGAGACAG TGAACGTAAG ATTCCAGGTG 241 CGGAAGTTGG GTTAAGCAAT CCTTTTAGCC GACTTATGTG AAAACCACTT GGTATTTTGT 301 TATATCCGGA GTCTCATCTT CTTTAACTGA ATTGTGGTTT CCTGTCTTTC AGTTTAGTTT 361 ACAGTAGTTC GCTAGATGAT GTTGTATCTC T Predicted gene structure (within gDNA segment 9290 to 5890): Exon 1 8690 8550 ( 141 n); cDNA 1 141 ( 141 n); score: 1.000 Intron 1 8549 8028 ( 522 n); Pd: 0.999 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 2 8027 7939 ( 89 n); cDNA 142 230 ( 89 n); score: 1.000 Intron 2 7938 6661 (1278 n); Pd: 0.995 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 3 6660 6500 ( 161 n); cDNA 231 391 ( 161 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E287049+ 1.000 391 1.000 C PGS_C10SLe0045H11.1-_SGN-E287049+ (8690 8550,8027 7939,6660 6500) Alignment (genomic DNA sequence = upper lines): TTTGCCCTGT TGTGGTTGTG AGGTATCCTG ATGAGAAGGA TGGTGGAAAT GCTGCTCGTA 8631 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCCCTGT TGTGGTTGTG AGGTATCCTG ATGAGAAGGA TGGTGGAAAT GCTGCTCGTA 60 AGGGCGGAGT TCCTGTGGCA TCTGCCTCAA AAGAAAACGA GGAGGAAGGC GAGTACCATG 8571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGCGGAGT TCCTGTGGCA TCTGCCTCAA AAGAAAACGA GGAGGAAGGC GAGTACCATG 120 ATGCTTGTGA TGGTCGTCAA GGTATGTGCA AAATTCATCC TAATGTTTGC TTAGTTATTT 8511 |||||||||| |||||||||| | ATGCTTGTGA TGGTCGTCAA G......... .......... .......... .......... 141 TCGGGTCTTT ATATGTAAAT TTATGCAATT TGCTGCTGGT TATCAGTTTG TTCCATTTTC 8451 .......... .......... .......... .......... .......... .......... 141 TAATTGAAAT GAAAGACCCT TTCATGTTTT ATAATGTAAA ATGTGGCACA CTGCTGTCAA 8391 .......... .......... .......... .......... .......... .......... 141 CTCTGTGATT TGGCTGTGTG TTATACCAAA AGGAAAATTA GGTGGGTACT CCCCAAAATA 8331 .......... .......... .......... .......... .......... .......... 141 GTCACATTCA AGAAAGGTAA TGCCTGTTAC AGTTTATGCA TATGATTTTG ACATGCAATA 8271 .......... .......... .......... .......... .......... .......... 141 GAGTGCAGGA AATCCGTGAT ACTTGTAACA ATTATGATAT GTTTGGCAAC AATATCGTTA 8211 .......... .......... .......... .......... .......... .......... 141 GAGTATATAG CTTTAAAAGT TCCAAAATGT GAGTGCATTT TTGGAAAATG GAATAAATGA 8151 .......... .......... .......... .......... .......... .......... 141 CTCGTGTTGA AATGGGAACT TGAACTGAAG CACCCTCTTG AAAACTTAGT ATTACAATGC 8091 .......... .......... .......... .......... .......... .......... 141 TCAAACATGT GTTCTGAATC CTGAGGTCAA TTTTGTTTTA AATTGTCATT CTCCATGAAG 8031 .......... .......... .......... .......... .......... .......... 141 CAGGATCACA ACCAGCCATA GGAAAAGGCT CGAGAACTGA CAATTGACTT AGAGTTGCTT 7971 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GATCACA ACCAGCCATA GGAAAAGGCT CGAGAACTGA CAATTGACTT AGAGTTGCTT 198 AAGAAGTCCT TTGAAGAGAC AGTGAACGTA AGGTACAGTC ATTACATTCA TCTTAAAGTT 7911 |||||||||| |||||||||| |||||||||| || AAGAAGTCCT TTGAAGAGAC AGTGAACGTA AG........ .......... .......... 230 CATTACTTTA GTCTTTAGAT TATTAAACAT TGTACTTTTG ATGCTTGCGC CACTTACAAA 7851 .......... .......... .......... .......... .......... .......... 230 TGATAGTTGT ATTGCTTAGG AGTAGAATTT AGGGCATGAT TCATTTTTGG GGCCTATCTC 7791 .......... .......... .......... .......... .......... .......... 230 TTTTTGTATG AGACAGTAAG GTTCTTGTTC AGTTACTTTT TACTCTTAAA CATAAGTTTG 7731 .......... .......... .......... .......... .......... .......... 230 TAAGAGGACT ACAATTAGAT GAAAGTTACA CATATTTTCC CATTTGTTTT TTTATTATTG 7671 .......... .......... .......... .......... .......... .......... 230 TTTCTCCCTT ATTACCAAAA AAAACTTTCT TCCTATAAAT AATTTAATTT GGCACCCTAG 7611 .......... .......... .......... .......... .......... .......... 230 TGGCTGCTTC TGGTTTTAAC AGTTAATGGA GTAGCTTTCT TAGGACTAGG TTGTGTGCTC 7551 .......... .......... .......... .......... .......... .......... 230 CACCCTTGTA ACCTGTAATA AGCTAAATGC TTCCTTGGTC AATGGATGAG ACTATCAACC 7491 .......... .......... .......... .......... .......... .......... 230 ATGGTTTCCA TGACAGATTT GAGGAAGATG TAATTTGTTG ATAGCTATCT TTGTTGTGAA 7431 .......... .......... .......... .......... .......... .......... 230 AGTTTCACTT TGGGAGAAAA TAAAACATTG TATGATGTTG AAATAACAAT TTTGACTAAG 7371 .......... .......... .......... .......... .......... .......... 230 GAAACCGTAG CTCAACCTTG AACCAATTCA TTTTGAGTTC CCAATTTTTG AACTTTAGGT 7311 .......... .......... .......... .......... .......... .......... 230 CTTATGGAAT TTTTCTAGTG TTCTCCTAAG CTTGATTTGC CTTTTGAATT GGTGGTTCGA 7251 .......... .......... .......... .......... .......... .......... 230 TGTTTATGAA ATGCAGTTTA GCCACTATAA ATTGGTTTTT TAGATTTGTG GGTGAACTGT 7191 .......... .......... .......... .......... .......... .......... 230 GAAGTCAAAT CAACTTTGTG ATGTCACCAA AGATTAGATA AATGAGCCAT GAATCATTTC 7131 .......... .......... .......... .......... .......... .......... 230 TCTTCACTGA GATTTTTTTC AGGGCACATT GTGAAAGATT TTGGAGGAAA ACAAACAATT 7071 .......... .......... .......... .......... .......... .......... 230 CAAAATATCT AGGTTCGACG TTCCTGGAGA GTCAAATGAT ATATGAATAT GTTACACAAA 7011 .......... .......... .......... .......... .......... .......... 230 ATCTATTTTG GATGAATGGA ATAATAAACA AAGATTGTTA TACATAAAAT CAAATTGGAT 6951 .......... .......... .......... .......... .......... .......... 230 GGTTGAGATG TCAAAAAGGC CTTTCCTTTA TCCAAGAGAT AGTAGGTCTT TCAAGACAAT 6891 .......... .......... .......... .......... .......... .......... 230 TTGGTTTTGT CTGTGCAGAT CGCATGAGAG AGTTGCAAAC CAGTGCAACC AAGTAGCTAT 6831 .......... .......... .......... .......... .......... .......... 230 GTCTTGATAT CTTATGAGTT ATGCAATTAA TATTCTAGCT GTGTCATGCA TTATACATTT 6771 .......... .......... .......... .......... .......... .......... 230 GAACCTTGTT TTTAAATCAA TCCTCTACTC CCTTCCCTAT CGACTCTATG GTTATTTGAT 6711 .......... .......... .......... .......... .......... .......... 230 GGTTCTCTTT GTTAACTGGG ACTTTGATAC TCCCGCTTCT TTGGTGACAG ATTCCAGGTG 6651 |||||||||| .......... .......... .......... .......... .......... ATTCCAGGTG 240 CGGAAGTTGG GTTAAGCAAT CCTTTTAGCC GACTTATGTG AAAACCACTT GGTATTTTGT 6591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAGTTGG GTTAAGCAAT CCTTTTAGCC GACTTATGTG AAAACCACTT GGTATTTTGT 300 TATATCCGGA GTCTCATCTT CTTTAACTGA ATTGTGGTTT CCTGTCTTTC AGTTTAGTTT 6531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATCCGGA GTCTCATCTT CTTTAACTGA ATTGTGGTTT CCTGTCTTTC AGTTTAGTTT 360 ACAGTAGTTC GCTAGATGAT GTTGTATCTC T 6500 |||||||||| |||||||||| |||||||||| | ACAGTAGTTC GCTAGATGAT GTTGTATCTC T 391 hqPGS_C10SLe0045H11.1-_SGN-E287049+ (8690 8550,8027 7939,6660 6500) ******************************************************************************** EST sequence 55 +strand 545 n (File: SGN-E551003+) 1 CCCTTTCATG TTTTATAATG TAAAATGTGG CACACTGCTG TCAACTCTGT GATTTGGCTG 61 TGTGTTATAC CAAAAGGAAA ATTAGGTGGG TACTCCCCAA AATAGTCACA TTCAAGAAAG 121 GTAATGCCTG TTACAGTTTA TGCATATGAT TTTGACATGC AATAGAGTGC AGGAAATCCG 181 TGATACTTGT AACAATTATG ATATGTTTGG CAACAATATC GTTAGAGTAT ATAGCTTTAA 241 AAGTTCCAAA ATGTGAGTGC ATTTTTGGAA AATGGAATAA ATGACTCGTG TTGAAATGGG 301 AACTTGAACT GAAGCACCCT CTTGAAAACT TAGTATTACA ATGCTCAAAC ATGTGTTCTG 361 AATCCTGAGG TCAATTTTGT TTTAAATTGT CATTCTCCAT GAAGCAGGAT CACAACCAGC 421 CATAGGAAAA GGCTCGAGAA CTGACAATTG ACTTAGAGTT GCTTAAGAAG TCCTTTGAAG 481 AGACAGTGAA CGTAAGATTC CAGGTGCGGA AGTTGGGTTA AGCAATCCTT TTAGCCGACT 541 TATGT Predicted gene structure (within gDNA segment 9034 to 6002): Exon 1 8434 7939 ( 496 n); cDNA 1 496 ( 496 n); score: 1.000 Intron 1 7938 6661 (1278 n); Pd: 0.995 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 2 6660 6612 ( 49 n); cDNA 497 545 ( 49 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E551003+ 1.000 545 1.000 C PGS_C10SLe0045H11.1-_SGN-E551003+ (8434 7939,6660 6612) Alignment (genomic DNA sequence = upper lines): CCCTTTCATG TTTTATAATG TAAAATGTGG CACACTGCTG TCAACTCTGT GATTTGGCTG 8375 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTTTCATG TTTTATAATG TAAAATGTGG CACACTGCTG TCAACTCTGT GATTTGGCTG 60 TGTGTTATAC CAAAAGGAAA ATTAGGTGGG TACTCCCCAA AATAGTCACA TTCAAGAAAG 8315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTTATAC CAAAAGGAAA ATTAGGTGGG TACTCCCCAA AATAGTCACA TTCAAGAAAG 120 GTAATGCCTG TTACAGTTTA TGCATATGAT TTTGACATGC AATAGAGTGC AGGAAATCCG 8255 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATGCCTG TTACAGTTTA TGCATATGAT TTTGACATGC AATAGAGTGC AGGAAATCCG 180 TGATACTTGT AACAATTATG ATATGTTTGG CAACAATATC GTTAGAGTAT ATAGCTTTAA 8195 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATACTTGT AACAATTATG ATATGTTTGG CAACAATATC GTTAGAGTAT ATAGCTTTAA 240 AAGTTCCAAA ATGTGAGTGC ATTTTTGGAA AATGGAATAA ATGACTCGTG TTGAAATGGG 8135 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTCCAAA ATGTGAGTGC ATTTTTGGAA AATGGAATAA ATGACTCGTG TTGAAATGGG 300 AACTTGAACT GAAGCACCCT CTTGAAAACT TAGTATTACA ATGCTCAAAC ATGTGTTCTG 8075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGAACT GAAGCACCCT CTTGAAAACT TAGTATTACA ATGCTCAAAC ATGTGTTCTG 360 AATCCTGAGG TCAATTTTGT TTTAAATTGT CATTCTCCAT GAAGCAGGAT CACAACCAGC 8015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCTGAGG TCAATTTTGT TTTAAATTGT CATTCTCCAT GAAGCAGGAT CACAACCAGC 420 CATAGGAAAA GGCTCGAGAA CTGACAATTG ACTTAGAGTT GCTTAAGAAG TCCTTTGAAG 7955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAGGAAAA GGCTCGAGAA CTGACAATTG ACTTAGAGTT GCTTAAGAAG TCCTTTGAAG 480 AGACAGTGAA CGTAAGGTAC AGTCATTACA TTCATCTTAA AGTTCATTAC TTTAGTCTTT 7895 |||||||||| |||||| AGACAGTGAA CGTAAG.... .......... .......... .......... .......... 496 AGATTATTAA ACATTGTACT TTTGATGCTT GCGCCACTTA CAAATGATAG TTGTATTGCT 7835 .......... .......... .......... .......... .......... .......... 496 TAGGAGTAGA ATTTAGGGCA TGATTCATTT TTGGGGCCTA TCTCTTTTTG TATGAGACAG 7775 .......... .......... .......... .......... .......... .......... 496 TAAGGTTCTT GTTCAGTTAC TTTTTACTCT TAAACATAAG TTTGTAAGAG GACTACAATT 7715 .......... .......... .......... .......... .......... .......... 496 AGATGAAAGT TACACATATT TTCCCATTTG TTTTTTTATT ATTGTTTCTC CCTTATTACC 7655 .......... .......... .......... .......... .......... .......... 496 AAAAAAAACT TTCTTCCTAT AAATAATTTA ATTTGGCACC CTAGTGGCTG CTTCTGGTTT 7595 .......... .......... .......... .......... .......... .......... 496 TAACAGTTAA TGGAGTAGCT TTCTTAGGAC TAGGTTGTGT GCTCCACCCT TGTAACCTGT 7535 .......... .......... .......... .......... .......... .......... 496 AATAAGCTAA ATGCTTCCTT GGTCAATGGA TGAGACTATC AACCATGGTT TCCATGACAG 7475 .......... .......... .......... .......... .......... .......... 496 ATTTGAGGAA GATGTAATTT GTTGATAGCT ATCTTTGTTG TGAAAGTTTC ACTTTGGGAG 7415 .......... .......... .......... .......... .......... .......... 496 AAAATAAAAC ATTGTATGAT GTTGAAATAA CAATTTTGAC TAAGGAAACC GTAGCTCAAC 7355 .......... .......... .......... .......... .......... .......... 496 CTTGAACCAA TTCATTTTGA GTTCCCAATT TTTGAACTTT AGGTCTTATG GAATTTTTCT 7295 .......... .......... .......... .......... .......... .......... 496 AGTGTTCTCC TAAGCTTGAT TTGCCTTTTG AATTGGTGGT TCGATGTTTA TGAAATGCAG 7235 .......... .......... .......... .......... .......... .......... 496 TTTAGCCACT ATAAATTGGT TTTTTAGATT TGTGGGTGAA CTGTGAAGTC AAATCAACTT 7175 .......... .......... .......... .......... .......... .......... 496 TGTGATGTCA CCAAAGATTA GATAAATGAG CCATGAATCA TTTCTCTTCA CTGAGATTTT 7115 .......... .......... .......... .......... .......... .......... 496 TTTCAGGGCA CATTGTGAAA GATTTTGGAG GAAAACAAAC AATTCAAAAT ATCTAGGTTC 7055 .......... .......... .......... .......... .......... .......... 496 GACGTTCCTG GAGAGTCAAA TGATATATGA ATATGTTACA CAAAATCTAT TTTGGATGAA 6995 .......... .......... .......... .......... .......... .......... 496 TGGAATAATA AACAAAGATT GTTATACATA AAATCAAATT GGATGGTTGA GATGTCAAAA 6935 .......... .......... .......... .......... .......... .......... 496 AGGCCTTTCC TTTATCCAAG AGATAGTAGG TCTTTCAAGA CAATTTGGTT TTGTCTGTGC 6875 .......... .......... .......... .......... .......... .......... 496 AGATCGCATG AGAGAGTTGC AAACCAGTGC AACCAAGTAG CTATGTCTTG ATATCTTATG 6815 .......... .......... .......... .......... .......... .......... 496 AGTTATGCAA TTAATATTCT AGCTGTGTCA TGCATTATAC ATTTGAACCT TGTTTTTAAA 6755 .......... .......... .......... .......... .......... .......... 496 TCAATCCTCT ACTCCCTTCC CTATCGACTC TATGGTTATT TGATGGTTCT CTTTGTTAAC 6695 .......... .......... .......... .......... .......... .......... 496 TGGGACTTTG ATACTCCCGC TTCTTTGGTG ACAGATTCCA GGTGCGGAAG TTGGGTTAAG 6635 |||||| |||||||||| |||||||||| .......... .......... .......... ....ATTCCA GGTGCGGAAG TTGGGTTAAG 522 CAATCCTTTT AGCCGACTTA TGT 6612 |||||||||| |||||||||| ||| CAATCCTTTT AGCCGACTTA TGT 545 hqPGS_C10SLe0045H11.1-_SGN-E551003+ (8434 7939,6660 6612) ******************************************************************************** EST sequence 141 +strand 521 n (File: SGN-E310178+) 1 TTGATGTATC CATCGCCGAT ACTGATAACA TAGAGACTCA AAAGAAGCTT GAAGATGATT 61 TTGATGCGTT TACTTCTGCT AAGTCTTCTG ATTTGGCTCA GCCACTTGTT GAGGCGCAAA 121 TTCCGTACAA AATTCATATT GTGAAGGATC ATGATATGAA GGAAAGGCTA TGTCTTGAGG 181 TTGAGAGGCT AGGATTGAGT GCAGTTATCA TGGGTAGTCG AGGATTCGGG GCTACTAAGA 241 GAGGAAATGA TGGGAGGCTT GGAAGTGTTA GTGATTACTG TGTTAGGCAT TGTGTTTGCC 301 CTGTTGTGGT TGTGAGGTAT CCTGATGAGA AGGATGGTGG AAATGCTGCT CGTAAGGGCG 361 GAGTTCCTGT GGCATCTGCC TCAAAAGAAA ACGAGGAGGA AGGCGAGTAC CATGATGCTT 421 GTGATGGTCG TCAAGGATCA CAACCAGCCA TAGGAAAAGG CTCGAGAACT GACAATTGAC 481 TTAGAGTTGC TTAAGAAGTC CTTTGAAGAG ACAGTGAACG T Predicted gene structure (within gDNA segment 9584 to 7332): Exon 1 8984 8550 ( 435 n); cDNA 1 435 ( 435 n); score: 1.000 Intron 1 8549 8028 ( 522 n); Pd: 0.999 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 2 8027 7944 ( 84 n); cDNA 436 519 ( 84 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E310178+ 1.000 519 0.996 C PGS_C10SLe0045H11.1-_SGN-E310178+ (8984 8550,8027 7944) Alignment (genomic DNA sequence = upper lines): TTGATGTATC CATCGCCGAT ACTGATAACA TAGAGACTCA AAAGAAGCTT GAAGATGATT 8925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGTATC CATCGCCGAT ACTGATAACA TAGAGACTCA AAAGAAGCTT GAAGATGATT 60 TTGATGCGTT TACTTCTGCT AAGTCTTCTG ATTTGGCTCA GCCACTTGTT GAGGCGCAAA 8865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGCGTT TACTTCTGCT AAGTCTTCTG ATTTGGCTCA GCCACTTGTT GAGGCGCAAA 120 TTCCGTACAA AATTCATATT GTGAAGGATC ATGATATGAA GGAAAGGCTA TGTCTTGAGG 8805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGTACAA AATTCATATT GTGAAGGATC ATGATATGAA GGAAAGGCTA TGTCTTGAGG 180 TTGAGAGGCT AGGATTGAGT GCAGTTATCA TGGGTAGTCG AGGATTCGGG GCTACTAAGA 8745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGAGGCT AGGATTGAGT GCAGTTATCA TGGGTAGTCG AGGATTCGGG GCTACTAAGA 240 GAGGAAATGA TGGGAGGCTT GGAAGTGTTA GTGATTACTG TGTTAGGCAT TGTGTTTGCC 8685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAATGA TGGGAGGCTT GGAAGTGTTA GTGATTACTG TGTTAGGCAT TGTGTTTGCC 300 CTGTTGTGGT TGTGAGGTAT CCTGATGAGA AGGATGGTGG AAATGCTGCT CGTAAGGGCG 8625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTGTGGT TGTGAGGTAT CCTGATGAGA AGGATGGTGG AAATGCTGCT CGTAAGGGCG 360 GAGTTCCTGT GGCATCTGCC TCAAAAGAAA ACGAGGAGGA AGGCGAGTAC CATGATGCTT 8565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTCCTGT GGCATCTGCC TCAAAAGAAA ACGAGGAGGA AGGCGAGTAC CATGATGCTT 420 GTGATGGTCG TCAAGGTATG TGCAAAATTC ATCCTAATGT TTGCTTAGTT ATTTTCGGGT 8505 |||||||||| ||||| GTGATGGTCG TCAAG..... .......... .......... .......... .......... 435 CTTTATATGT AAATTTATGC AATTTGCTGC TGGTTATCAG TTTGTTCCAT TTTCTAATTG 8445 .......... .......... .......... .......... .......... .......... 435 AAATGAAAGA CCCTTTCATG TTTTATAATG TAAAATGTGG CACACTGCTG TCAACTCTGT 8385 .......... .......... .......... .......... .......... .......... 435 GATTTGGCTG TGTGTTATAC CAAAAGGAAA ATTAGGTGGG TACTCCCCAA AATAGTCACA 8325 .......... .......... .......... .......... .......... .......... 435 TTCAAGAAAG GTAATGCCTG TTACAGTTTA TGCATATGAT TTTGACATGC AATAGAGTGC 8265 .......... .......... .......... .......... .......... .......... 435 AGGAAATCCG TGATACTTGT AACAATTATG ATATGTTTGG CAACAATATC GTTAGAGTAT 8205 .......... .......... .......... .......... .......... .......... 435 ATAGCTTTAA AAGTTCCAAA ATGTGAGTGC ATTTTTGGAA AATGGAATAA ATGACTCGTG 8145 .......... .......... .......... .......... .......... .......... 435 TTGAAATGGG AACTTGAACT GAAGCACCCT CTTGAAAACT TAGTATTACA ATGCTCAAAC 8085 .......... .......... .......... .......... .......... .......... 435 ATGTGTTCTG AATCCTGAGG TCAATTTTGT TTTAAATTGT CATTCTCCAT GAAGCAGGAT 8025 ||| .......... .......... .......... .......... .......... .......GAT 438 CACAACCAGC CATAGGAAAA GGCTCGAGAA CTGACAATTG ACTTAGAGTT GCTTAAGAAG 7965 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAACCAGC CATAGGAAAA GGCTCGAGAA CTGACAATTG ACTTAGAGTT GCTTAAGAAG 498 TCCTTTGAAG AGACAGTGAA C 7944 |||||||||| |||||||||| | TCCTTTGAAG AGACAGTGAA C 519 hqPGS_C10SLe0045H11.1-_SGN-E310178+ (8984 8550,8027 7944) ******************************************************************************** EST sequence 105 +strand 321 n (File: SGN-E335947+) 1 TTGAGTGCAG TTATCATGGG TAGTCGAGGA TTCGCGGCTA CTAATAGAGG AAATGATGGG 61 AGGCTTGGAA GTGTTAGTGA TTACTGCGTT AGGCATTGAG TTTGCCCTGT TGTGGTTGTG 121 AGGTATCCTG ATGAGAAGGA TGGTGGAAAT GCTGCTCGTA AGGGCGGAGT TCCTGTGGCA 181 TCTGCCTCAA AAGAAAACGA GGAGGAAGGC GAGTACCATG ATGCTTGTGA TGGTCGTCAA 241 AGATCACAAC CAGCCATAGG AAAAGGCTCG AGAACTGACA ATCGACTTAG AGTTGCTTAA 301 GAAGTCCTTT GAAGAGACAG T Predicted gene structure (within gDNA segment 9390 to 7338): Exon 1 8790 8550 ( 241 n); cDNA 1 241 ( 241 n); score: 0.979 Intron 1 8549 8028 ( 522 n); Pd: 0.999 (s: 0.98), Pa: 0.960 (s: 0.98) Exon 2 8027 7948 ( 80 n); cDNA 242 321 ( 80 n); score: 0.988 MATCH C10SLe0045H11.1- SGN-E335947+ 0.981 321 1.000 C PGS_C10SLe0045H11.1-_SGN-E335947+ (8790 8550,8027 7948) Alignment (genomic DNA sequence = upper lines): TTGAGTGCAG TTATCATGGG TAGTCGAGGA TTCGGGGCTA CTAAGAGAGG AAATGATGGG 8731 |||||||||| |||||||||| |||||||||| |||| ||||| |||| ||||| |||||||||| TTGAGTGCAG TTATCATGGG TAGTCGAGGA TTCGCGGCTA CTAATAGAGG AAATGATGGG 60 AGGCTTGGAA GTGTTAGTGA TTACTGTGTT AGGCATTGTG TTTGCCCTGT TGTGGTTGTG 8671 |||||||||| |||||||||| |||||| ||| |||||||| | |||||||||| |||||||||| AGGCTTGGAA GTGTTAGTGA TTACTGCGTT AGGCATTGAG TTTGCCCTGT TGTGGTTGTG 120 AGGTATCCTG ATGAGAAGGA TGGTGGAAAT GCTGCTCGTA AGGGCGGAGT TCCTGTGGCA 8611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTATCCTG ATGAGAAGGA TGGTGGAAAT GCTGCTCGTA AGGGCGGAGT TCCTGTGGCA 180 TCTGCCTCAA AAGAAAACGA GGAGGAAGGC GAGTACCATG ATGCTTGTGA TGGTCGTCAA 8551 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCCTCAA AAGAAAACGA GGAGGAAGGC GAGTACCATG ATGCTTGTGA TGGTCGTCAA 240 GGTATGTGCA AAATTCATCC TAATGTTTGC TTAGTTATTT TCGGGTCTTT ATATGTAAAT 8491 A......... .......... .......... .......... .......... .......... 241 TTATGCAATT TGCTGCTGGT TATCAGTTTG TTCCATTTTC TAATTGAAAT GAAAGACCCT 8431 .......... .......... .......... .......... .......... .......... 241 TTCATGTTTT ATAATGTAAA ATGTGGCACA CTGCTGTCAA CTCTGTGATT TGGCTGTGTG 8371 .......... .......... .......... .......... .......... .......... 241 TTATACCAAA AGGAAAATTA GGTGGGTACT CCCCAAAATA GTCACATTCA AGAAAGGTAA 8311 .......... .......... .......... .......... .......... .......... 241 TGCCTGTTAC AGTTTATGCA TATGATTTTG ACATGCAATA GAGTGCAGGA AATCCGTGAT 8251 .......... .......... .......... .......... .......... .......... 241 ACTTGTAACA ATTATGATAT GTTTGGCAAC AATATCGTTA GAGTATATAG CTTTAAAAGT 8191 .......... .......... .......... .......... .......... .......... 241 TCCAAAATGT GAGTGCATTT TTGGAAAATG GAATAAATGA CTCGTGTTGA AATGGGAACT 8131 .......... .......... .......... .......... .......... .......... 241 TGAACTGAAG CACCCTCTTG AAAACTTAGT ATTACAATGC TCAAACATGT GTTCTGAATC 8071 .......... .......... .......... .......... .......... .......... 241 CTGAGGTCAA TTTTGTTTTA AATTGTCATT CTCCATGAAG CAGGATCACA ACCAGCCATA 8011 ||||||| |||||||||| .......... .......... .......... .......... ...GATCACA ACCAGCCATA 258 GGAAAAGGCT CGAGAACTGA CAATTGACTT AGAGTTGCTT AAGAAGTCCT TTGAAGAGAC 7951 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| GGAAAAGGCT CGAGAACTGA CAATCGACTT AGAGTTGCTT AAGAAGTCCT TTGAAGAGAC 318 AGT 7948 ||| AGT 321 hqPGS_C10SLe0045H11.1-_SGN-E335947+ (8790 8550,8027 7948) ******************************************************************************** EST sequence 53 +strand 562 n (File: SGN-E391715+) 1 CAAACAGAAT GCAGAAACAG CCACCGCACA CGGCGGATTC CGGCATGCCA AACCTCGCGA 61 ACATCAAAAT CAAGTGTTCA TCACCACGTT TTCCACCACC GACAACTCCT TCCGCCACCG 121 ACACTCCGAC CGCCGGTGCG CAGCGCAAAA TTGGAATCGC CGTTGATCTT AGTGACGAAT 181 CTGCCTTCGC CGTCAAGTGG GCTGTCCACC ACTACCTCCG TCCTGGTGAC GCAGTTATCC 241 TTGTCCACGT CCGCCCTACC TCCGTACTCT ACGGTGCTGA TTGGGGTTCT GTTGATGTAT 301 CCATCGCCGA TACTGATAAC ATAGAGACTC AAAAGAAGCT TGAAGATGAT TTTGATGCGT 361 TTACTTCTGC TAAGTCTTCT GATTTGGCTC AGCCACTTGT TGAGGCGCAA ATTCCGTACA 421 AAATTCATAT TGTGAAGGAT CATGATATGA AGGAAAGGCT ATGTCTTGAG GTTGAGAGGC 481 TAGGATTGAG TGCAGTTATC ATGGGTAGTC GAGGATTCGG GGCTACTAAG AAAGGAAATG 541 ATGGGAGGCT TGGAAATGTT AT Predicted gene structure (within gDNA segment 9875 to 8041): Exon 1 9275 8715 ( 561 n); cDNA 1 561 ( 561 n); score: 0.996 MATCH C10SLe0045H11.1- SGN-E391715+ 0.996 561 0.998 C PGS_C10SLe0045H11.1-_SGN-E391715+ (9275 8715) Alignment (genomic DNA sequence = upper lines): CAAACAGAAT GCAGAAACAG CCACCGCACA CGGCGGATTC CGGCATGCCA AACCTCGCGA 9216 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACAGAAT GCAGAAACAG CCACCGCACA CGGCGGATTC CGGCATGCCA AACCTCGCGA 60 ACATCAAAAT CAAGTGTTCA TCACCACGTT TTCCACCACC GACAACTCCT TCCGCCACCG 9156 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCAAAAT CAAGTGTTCA TCACCACGTT TTCCACCACC GACAACTCCT TCCGCCACCG 120 ACACTCCGAC CGCCGGTGCG CAGCGCAAAA TTGGAATCGC CGTTGATCTT AGTGACGAAT 9096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTCCGAC CGCCGGTGCG CAGCGCAAAA TTGGAATCGC CGTTGATCTT AGTGACGAAT 180 CTGCCTTCGC CGTCAAGTGG GCTGTCCACC ACTACCTCCG TCCTGGTGAC GCAGTTATCC 9036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCCTTCGC CGTCAAGTGG GCTGTCCACC ACTACCTCCG TCCTGGTGAC GCAGTTATCC 240 TTGTCCACGT CCGCCCTACC TCCGTACTCT ACGGTGCTGA TTGGGGTTCT GTTGATGTAT 8976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTCCACGT CCGCCCTACC TCCGTACTCT ACGGTGCTGA TTGGGGTTCT GTTGATGTAT 300 CCATCGCCGA TACTGATAAC ATAGAGACTC AAAAGAAGCT TGAAGATGAT TTTGATGCGT 8916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATCGCCGA TACTGATAAC ATAGAGACTC AAAAGAAGCT TGAAGATGAT TTTGATGCGT 360 TTACTTCTGC TAAGTCTTCT GATTTGGCTC AGCCACTTGT TGAGGCGCAA ATTCCGTACA 8856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTTCTGC TAAGTCTTCT GATTTGGCTC AGCCACTTGT TGAGGCGCAA ATTCCGTACA 420 AAATTCATAT TGTGAAGGAT CATGATATGA AGGAAAGGCT ATGTCTTGAG GTTGAGAGGC 8796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTCATAT TGTGAAGGAT CATGATATGA AGGAAAGGCT ATGTCTTGAG GTTGAGAGGC 480 TAGGATTGAG TGCAGTTATC ATGGGTAGTC GAGGATTCGG GGCTACTAAG AGAGGAAATG 8736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TAGGATTGAG TGCAGTTATC ATGGGTAGTC GAGGATTCGG GGCTACTAAG AAAGGAAATG 540 ATGGGAGGCT TGGAAGTGTT A 8715 |||||||||| ||||| |||| | ATGGGAGGCT TGGAAATGTT A 561 hqPGS_C10SLe0045H11.1-_SGN-E391715+ (9275 8715) ******************************************************************************** EST sequence 99 +strand 510 n (File: SGN-E271319+) 1 AAACAGAATG CAGAAACAGC CACCGCACAC GGCGGATTCC GGCATGCCAA ACCTCGCGAA 61 CATCAAAATC AAGTGTTCAT CACCACGTTT TCCACCACCG ACAACTCCTT CCGCCACCGA 121 CACTCCGACC GCCGGTGCGC AGCGCAAAAT TGGAATCGCC GTTGATCTTA GTGACGAATC 181 TGCCTTCGCC GTCAAGTGGG CTGTCCACCA CTACCTCCGT CCTGGTGACG CAGTTATCCT 241 TGTCCACGTC CGCCCTACCT CCGTACTCTA CGGTGCTGAT TGGGGTTCTG TTGATGTATC 301 CATCGCCGAT ACTGATAACA TAGAGACTCA AAAGAAGCTT GAAGATGATT TTGATGCGTT 361 TACTTCTGCT AAGTCTTCTG ATTTGGCTCA GCCACTTGTT GAGGCGCAAA TTCCGTACAA 421 AATTCATATT GTGAAGGATC ATGATATGAA GGAAAGGCTA TGTCTTGAGG TTGAGAGGCT 481 AGGATTGAGT GCAGTTATCA TGGGTAGTCG Predicted gene structure (within gDNA segment 9874 to 8155): Exon 1 9274 8765 ( 510 n); cDNA 1 510 ( 510 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E271319+ 1.000 510 1.000 C PGS_C10SLe0045H11.1-_SGN-E271319+ (9274 8765) Alignment (genomic DNA sequence = upper lines): AAACAGAATG CAGAAACAGC CACCGCACAC GGCGGATTCC GGCATGCCAA ACCTCGCGAA 9215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAGAATG CAGAAACAGC CACCGCACAC GGCGGATTCC GGCATGCCAA ACCTCGCGAA 60 CATCAAAATC AAGTGTTCAT CACCACGTTT TCCACCACCG ACAACTCCTT CCGCCACCGA 9155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCAAAATC AAGTGTTCAT CACCACGTTT TCCACCACCG ACAACTCCTT CCGCCACCGA 120 CACTCCGACC GCCGGTGCGC AGCGCAAAAT TGGAATCGCC GTTGATCTTA GTGACGAATC 9095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTCCGACC GCCGGTGCGC AGCGCAAAAT TGGAATCGCC GTTGATCTTA GTGACGAATC 180 TGCCTTCGCC GTCAAGTGGG CTGTCCACCA CTACCTCCGT CCTGGTGACG CAGTTATCCT 9035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTTCGCC GTCAAGTGGG CTGTCCACCA CTACCTCCGT CCTGGTGACG CAGTTATCCT 240 TGTCCACGTC CGCCCTACCT CCGTACTCTA CGGTGCTGAT TGGGGTTCTG TTGATGTATC 8975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCACGTC CGCCCTACCT CCGTACTCTA CGGTGCTGAT TGGGGTTCTG TTGATGTATC 300 CATCGCCGAT ACTGATAACA TAGAGACTCA AAAGAAGCTT GAAGATGATT TTGATGCGTT 8915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCGCCGAT ACTGATAACA TAGAGACTCA AAAGAAGCTT GAAGATGATT TTGATGCGTT 360 TACTTCTGCT AAGTCTTCTG ATTTGGCTCA GCCACTTGTT GAGGCGCAAA TTCCGTACAA 8855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTCTGCT AAGTCTTCTG ATTTGGCTCA GCCACTTGTT GAGGCGCAAA TTCCGTACAA 420 AATTCATATT GTGAAGGATC ATGATATGAA GGAAAGGCTA TGTCTTGAGG TTGAGAGGCT 8795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCATATT GTGAAGGATC ATGATATGAA GGAAAGGCTA TGTCTTGAGG TTGAGAGGCT 480 AGGATTGAGT GCAGTTATCA TGGGTAGTCG 8765 |||||||||| |||||||||| |||||||||| AGGATTGAGT GCAGTTATCA TGGGTAGTCG 510 hqPGS_C10SLe0045H11.1-_SGN-E271319+ (9274 8765) ******************************************************************************** EST sequence 147 +strand 573 n (File: SGN-E329725+) 1 GTCAACATAT AAAAAAAAGG TCATTTCAAT TGTAATTTTA AAAACCGTAA CCCTAGCTCC 61 GATCAAACAG AATGCAGAAA CAGCCACCGC ACACGGCGGA TTCCGGCATG CCAAACCTCG 121 CGAACATCAA AATCAAGTGT TCATCACCAC GTTTTCCACC ACCGACAACT CCTTCCGCCA 181 CCGACACTCC GACCGCCGGT GCGCAGCGCA AAATTGGAAT CGCCGTTGAT CTTAGTGACG 241 AATCTGCCTT CGCCGTCAAG TGGGCTGTCC ACCACTACCT CCGTCCTGGT GACGCAGTTA 301 TCCTTGTCCA CGTCCGCCCT ACCTCCGTAC TCTACGGTGC TGATTGGGGT TCTGTTGATG 361 TATCCATCGC CGATACTGAT AACATAGAGA CTCAAAAGAA GCTTGAAGAT GATTTTGATG 421 CGTTTACTTC TGCTAAGTCT TCTGATTTGG CTCAGCCACT TGTTGAGGCG CAAATTCCGT 481 ACAAAATTCA TATTGTGAAG GATCATGATA TGAAGGAAAG GCTATGTCTT GAGGTTGAGA 541 GGCTAGGATT GAGTGCAGTT ATCATGGGTA GTC Predicted gene structure (within gDNA segment 10028 to 8156): Exon 1 9338 8766 ( 573 n); cDNA 1 573 ( 573 n); score: 0.997 MATCH C10SLe0045H11.1- SGN-E329725+ 0.997 573 1.000 C PGS_C10SLe0045H11.1-_SGN-E329725+ (9338 8766) Alignment (genomic DNA sequence = upper lines): GTCAACATAG AAAAAAAAGG TCATTTCAAT TGTAATTTTA AAAACCCTAA CCCTAGCTCC 9279 ||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| GTCAACATAT AAAAAAAAGG TCATTTCAAT TGTAATTTTA AAAACCGTAA CCCTAGCTCC 60 GATCAAACAG AATGCAGAAA CAGCCACCGC ACACGGCGGA TTCCGGCATG CCAAACCTCG 9219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCAAACAG AATGCAGAAA CAGCCACCGC ACACGGCGGA TTCCGGCATG CCAAACCTCG 120 CGAACATCAA AATCAAGTGT TCATCACCAC GTTTTCCACC ACCGACAACT CCTTCCGCCA 9159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACATCAA AATCAAGTGT TCATCACCAC GTTTTCCACC ACCGACAACT CCTTCCGCCA 180 CCGACACTCC GACCGCCGGT GCGCAGCGCA AAATTGGAAT CGCCGTTGAT CTTAGTGACG 9099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGACACTCC GACCGCCGGT GCGCAGCGCA AAATTGGAAT CGCCGTTGAT CTTAGTGACG 240 AATCTGCCTT CGCCGTCAAG TGGGCTGTCC ACCACTACCT CCGTCCTGGT GACGCAGTTA 9039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTGCCTT CGCCGTCAAG TGGGCTGTCC ACCACTACCT CCGTCCTGGT GACGCAGTTA 300 TCCTTGTCCA CGTCCGCCCT ACCTCCGTAC TCTACGGTGC TGATTGGGGT TCTGTTGATG 8979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTGTCCA CGTCCGCCCT ACCTCCGTAC TCTACGGTGC TGATTGGGGT TCTGTTGATG 360 TATCCATCGC CGATACTGAT AACATAGAGA CTCAAAAGAA GCTTGAAGAT GATTTTGATG 8919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCATCGC CGATACTGAT AACATAGAGA CTCAAAAGAA GCTTGAAGAT GATTTTGATG 420 CGTTTACTTC TGCTAAGTCT TCTGATTTGG CTCAGCCACT TGTTGAGGCG CAAATTCCGT 8859 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTTACTTC TGCTAAGTCT TCTGATTTGG CTCAGCCACT TGTTGAGGCG CAAATTCCGT 480 ACAAAATTCA TATTGTGAAG GATCATGATA TGAAGGAAAG GCTATGTCTT GAGGTTGAGA 8799 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAATTCA TATTGTGAAG GATCATGATA TGAAGGAAAG GCTATGTCTT GAGGTTGAGA 540 GGCTAGGATT GAGTGCAGTT ATCATGGGTA GTC 8766 |||||||||| |||||||||| |||||||||| ||| GGCTAGGATT GAGTGCAGTT ATCATGGGTA GTC 573 hqPGS_C10SLe0045H11.1-_SGN-E329725+ (9338 8766) ******************************************************************************** EST sequence 127 +strand 336 n (File: SGN-E210256+) 1 CGCACACGGC GGATTCCGGC ATGCCAAACC TCGCGAACAT CAAAATCAAG TGTTCATCAC 61 CACGTTTTCC ACCACCGACA ACTCCTTCCG CCACCGACAC TCCGACCGCC GGTGCGCAGC 121 GCAAAATTGG AATCGCCGTT GATCTTAGTG ACGAATCTGC CTTCGCCGTC AAGTGGGCTG 181 TCCACCACTA CCTCCGTCCT GGTGACGCAG TTATCCTTGT CCACGTCCGC CCTACCTCCG 241 TACTCTACGG TGCTGATTGG GGTTCTGTTG ATGTATCCAT CGCCGATACT GATAACATAG 301 AGACTCAAAA GAAGCTTGAA GATGATTTTG ATGCGT Predicted gene structure (within gDNA segment 9851 to 8306): Exon 1 9251 8916 ( 336 n); cDNA 1 336 ( 336 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E210256+ 1.000 336 1.000 C PGS_C10SLe0045H11.1-_SGN-E210256+ (9251 8916) Alignment (genomic DNA sequence = upper lines): CGCACACGGC GGATTCCGGC ATGCCAAACC TCGCGAACAT CAAAATCAAG TGTTCATCAC 9192 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCACACGGC GGATTCCGGC ATGCCAAACC TCGCGAACAT CAAAATCAAG TGTTCATCAC 60 CACGTTTTCC ACCACCGACA ACTCCTTCCG CCACCGACAC TCCGACCGCC GGTGCGCAGC 9132 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGTTTTCC ACCACCGACA ACTCCTTCCG CCACCGACAC TCCGACCGCC GGTGCGCAGC 120 GCAAAATTGG AATCGCCGTT GATCTTAGTG ACGAATCTGC CTTCGCCGTC AAGTGGGCTG 9072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAATTGG AATCGCCGTT GATCTTAGTG ACGAATCTGC CTTCGCCGTC AAGTGGGCTG 180 TCCACCACTA CCTCCGTCCT GGTGACGCAG TTATCCTTGT CCACGTCCGC CCTACCTCCG 9012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCACCACTA CCTCCGTCCT GGTGACGCAG TTATCCTTGT CCACGTCCGC CCTACCTCCG 240 TACTCTACGG TGCTGATTGG GGTTCTGTTG ATGTATCCAT CGCCGATACT GATAACATAG 8952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTCTACGG TGCTGATTGG GGTTCTGTTG ATGTATCCAT CGCCGATACT GATAACATAG 300 AGACTCAAAA GAAGCTTGAA GATGATTTTG ATGCGT 8916 |||||||||| |||||||||| |||||||||| |||||| AGACTCAAAA GAAGCTTGAA GATGATTTTG ATGCGT 336 hqPGS_C10SLe0045H11.1-_SGN-E210256+ (9251 8916) ******************************************************************************** EST sequence 146 +strand 420 n (File: SGN-E329642+) 1 GTCAACATAG AAAAAAAAGG TCATTTCAAT TGTAATTTTA AAAACCCTAA CCCTAGCTCC 61 GATCAAACAG AATGCAGAAA CAGCCACCGC ACACGGCGGA TTCCGGCATG CCAAACCTCG 121 CGAACATCAA AATCAAGTGT TCATCACCAC GTTTTCCACC ACCGACAACT CCTTCCGCCA 181 CCGACACTCC GACCGCCGGT GCGCAGCGCA AAATTGGAAT CGCCGTTGAT CTTAGTGACG 241 AATCTGCCTT CGCCGTCAAG TGGGCTGTCC ACCACTACCT CCGTCCTGGT GACGCAGTTA 301 TCCTTGTCCA CGTCCGCCCT ACCTCCGTAC TCTACGGTGC TGATTGGGGT TCTGTTGATG 361 TATCCATCGC CGATACTGAT AACATAGAGA CTCAAAAGAA GCTTGAAGAT GATTTTGATG Predicted gene structure (within gDNA segment 9938 to 8309): Exon 1 9338 8919 ( 420 n); cDNA 1 420 ( 420 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E329642+ 1.000 420 1.000 C PGS_C10SLe0045H11.1-_SGN-E329642+ (9338 8919) Alignment (genomic DNA sequence = upper lines): GTCAACATAG AAAAAAAAGG TCATTTCAAT TGTAATTTTA AAAACCCTAA CCCTAGCTCC 9279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAACATAG AAAAAAAAGG TCATTTCAAT TGTAATTTTA AAAACCCTAA CCCTAGCTCC 60 GATCAAACAG AATGCAGAAA CAGCCACCGC ACACGGCGGA TTCCGGCATG CCAAACCTCG 9219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCAAACAG AATGCAGAAA CAGCCACCGC ACACGGCGGA TTCCGGCATG CCAAACCTCG 120 CGAACATCAA AATCAAGTGT TCATCACCAC GTTTTCCACC ACCGACAACT CCTTCCGCCA 9159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACATCAA AATCAAGTGT TCATCACCAC GTTTTCCACC ACCGACAACT CCTTCCGCCA 180 CCGACACTCC GACCGCCGGT GCGCAGCGCA AAATTGGAAT CGCCGTTGAT CTTAGTGACG 9099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGACACTCC GACCGCCGGT GCGCAGCGCA AAATTGGAAT CGCCGTTGAT CTTAGTGACG 240 AATCTGCCTT CGCCGTCAAG TGGGCTGTCC ACCACTACCT CCGTCCTGGT GACGCAGTTA 9039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTGCCTT CGCCGTCAAG TGGGCTGTCC ACCACTACCT CCGTCCTGGT GACGCAGTTA 300 TCCTTGTCCA CGTCCGCCCT ACCTCCGTAC TCTACGGTGC TGATTGGGGT TCTGTTGATG 8979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTGTCCA CGTCCGCCCT ACCTCCGTAC TCTACGGTGC TGATTGGGGT TCTGTTGATG 360 TATCCATCGC CGATACTGAT AACATAGAGA CTCAAAAGAA GCTTGAAGAT GATTTTGATG 8919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCATCGC CGATACTGAT AACATAGAGA CTCAAAAGAA GCTTGAAGAT GATTTTGATG 420 hqPGS_C10SLe0045H11.1-_SGN-E329642+ (9338 8919) ******************************************************************************** EST sequence 140 +strand 322 n (File: SGN-E308308+) 1 CAATTGTTAT TTTAAAAACC CTAACCCTAG CTCCGATCAA ACAGAATGCA GAAACAGCCA 61 CCGCACACGG CGGATTCCGG CATGCCAAAC CTCGCGAACA TCAAAATCAA GTGTTCATCA 121 CCACGTTTTC CACCACCGAC AACTCCTTCC GCCACCGACA CTCCGACCGC CGGTGCGCAG 181 CGCAAAATTG GAATCGCCGG TGATCTTAGT GACGAATCTG CCTTCGCCGG CAAGTGGGCT 241 GTCCACCACT ACCTCCGTCC TGGTGACGCA GTTATCCTTG TCCACGTCCG CCCTACCTCC 301 GTACTCTACG GAGCTGATTG GG Predicted gene structure (within gDNA segment 9984 to 8282): Exon 1 9312 8991 ( 322 n); cDNA 1 322 ( 322 n); score: 0.988 MATCH C10SLe0045H11.1- SGN-E308308+ 0.988 322 1.000 C PGS_C10SLe0045H11.1-_SGN-E308308+ (9312 8991) Alignment (genomic DNA sequence = upper lines): CAATTGTAAT TTTAAAAACC CTAACCCTAG CTCCGATCAA ACAGAATGCA GAAACAGCCA 9253 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTGTTAT TTTAAAAACC CTAACCCTAG CTCCGATCAA ACAGAATGCA GAAACAGCCA 60 CCGCACACGG CGGATTCCGG CATGCCAAAC CTCGCGAACA TCAAAATCAA GTGTTCATCA 9193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCACACGG CGGATTCCGG CATGCCAAAC CTCGCGAACA TCAAAATCAA GTGTTCATCA 120 CCACGTTTTC CACCACCGAC AACTCCTTCC GCCACCGACA CTCCGACCGC CGGTGCGCAG 9133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACGTTTTC CACCACCGAC AACTCCTTCC GCCACCGACA CTCCGACCGC CGGTGCGCAG 180 CGCAAAATTG GAATCGCCGT TGATCTTAGT GACGAATCTG CCTTCGCCGT CAAGTGGGCT 9073 |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CGCAAAATTG GAATCGCCGG TGATCTTAGT GACGAATCTG CCTTCGCCGG CAAGTGGGCT 240 GTCCACCACT ACCTCCGTCC TGGTGACGCA GTTATCCTTG TCCACGTCCG CCCTACCTCC 9013 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCACCACT ACCTCCGTCC TGGTGACGCA GTTATCCTTG TCCACGTCCG CCCTACCTCC 300 GTACTCTACG GTGCTGATTG GG 8991 |||||||||| | |||||||| || GTACTCTACG GAGCTGATTG GG 322 hqPGS_C10SLe0045H11.1-_SGN-E308308+ (9312 8991) ******************************************************************************** EST sequence 4 +strand 437 n (File: SGN-E240128+) 1 GCCCTATAAA TCATCAGCAT TCATTGTGCC AACCTCAAGC TGTTTGGTTG AGCTGATAGA 61 GACCCCATTT CTCGTAATAA CCTTAAGTGA TATTGAGATT GTCAACTTGG AGAGAGTTGG 121 ATTTGGGCAG AAGAATTTTG ATATGGCAAT TGTCTTCAAG GACTTCAAGC GTGATGTCAT 181 GCGCATAGAT TCAATTCCTG TCTCTGCACT TGATGGCATC AAGGAGTGGC TTGACACAAC 241 TGACATCAAG TATTATGAGA GCAAGATGAA CCTGAATTGG CGTGAAGTAC TGAAGACCAT 301 AACTGAAGAT CCCCAAAGGT TTATAGATGA AGGTGGTTGG GAATTTTTAA ACATAGATGC 361 TTCTGACTCA GAATCTGAAA ATTCGGAGGA GTCAGACCAA GGCTATGAAC CCTCAGACGC 421 TGAACCTGAG TCAGATT Predicted gene structure (within gDNA segment 15334 to 16980): Exon 1 15934 16370 ( 437 n); cDNA 1 437 ( 437 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E240128+ 1.000 437 1.000 C PGS_C10SLe0045H11.1+_SGN-E240128+ (15934 16370) Alignment (genomic DNA sequence = upper lines): GCCCTATAAA TCATCAGCAT TCATTGTGCC AACCTCAAGC TGTTTGGTTG AGCTGATAGA 15993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCTATAAA TCATCAGCAT TCATTGTGCC AACCTCAAGC TGTTTGGTTG AGCTGATAGA 60 GACCCCATTT CTCGTAATAA CCTTAAGTGA TATTGAGATT GTCAACTTGG AGAGAGTTGG 16053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCCCATTT CTCGTAATAA CCTTAAGTGA TATTGAGATT GTCAACTTGG AGAGAGTTGG 120 ATTTGGGCAG AAGAATTTTG ATATGGCAAT TGTCTTCAAG GACTTCAAGC GTGATGTCAT 16113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGGCAG AAGAATTTTG ATATGGCAAT TGTCTTCAAG GACTTCAAGC GTGATGTCAT 180 GCGCATAGAT TCAATTCCTG TCTCTGCACT TGATGGCATC AAGGAGTGGC TTGACACAAC 16173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCATAGAT TCAATTCCTG TCTCTGCACT TGATGGCATC AAGGAGTGGC TTGACACAAC 240 TGACATCAAG TATTATGAGA GCAAGATGAA CCTGAATTGG CGTGAAGTAC TGAAGACCAT 16233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACATCAAG TATTATGAGA GCAAGATGAA CCTGAATTGG CGTGAAGTAC TGAAGACCAT 300 AACTGAAGAT CCCCAAAGGT TTATAGATGA AGGTGGTTGG GAATTTTTAA ACATAGATGC 16293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGAAGAT CCCCAAAGGT TTATAGATGA AGGTGGTTGG GAATTTTTAA ACATAGATGC 360 TTCTGACTCA GAATCTGAAA ATTCGGAGGA GTCAGACCAA GGCTATGAAC CCTCAGACGC 16353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGACTCA GAATCTGAAA ATTCGGAGGA GTCAGACCAA GGCTATGAAC CCTCAGACGC 420 TGAACCTGAG TCAGATT 16370 |||||||||| ||||||| TGAACCTGAG TCAGATT 437 hqPGS_C10SLe0045H11.1+_SGN-E240128+ (15934 16370) ******************************************************************************** EST sequence 52 -strand 410 n (File: SGN-E233859-) 1 AGAAAGGAGA TGAACCTGCC AGTGAGGATG AGAGAAGAAG AAAAAAGAAC TTTGGCAAGT 61 CCCGATCCGG TCCAAGTTCT GCTGGTTCTA AGCGAATGAA GTTCAGGTAG TTTTGCTGAT 121 TCAATTCCGT CTTAGAACAT TACAAGTAGG TCTTCCTTGA AAGTTTTAGT TAGTTATCAA 181 GTTCAGTTTT CTCTTGTATA TTACTTCTAA ATTGTTTCTC TTTGCACTCC ACTTTGGGTT 241 GTTAGACGCC GGTGGAGTTT GTCAGACTAG GTTCAGGTTC AAATGTTTCT GTTTACCTTC 301 GTTCAGCTAG ATATCATGTT TTTATGTATG CGTTTACAGT TGGCTGTGCG CGCAAACTTC 361 TCATATTGAA TTCCAACTGG AAACTTCTCC AAAAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 15500 to 17695): Exon 1 16506 16895 ( 390 n); cDNA 1 390 ( 390 n); score: 0.987 PPA cDNA 391 410 MATCH C10SLe0045H11.1+ SGN-E233859- 0.987 390 0.951 C PGS_C10SLe0045H11.1+_SGN-E233859- (16506 16895) Alignment (genomic DNA sequence = upper lines): AGAAAGGAGA TGAACCTGAC AGTGAGGATG AGAGGAGGAG AAAGAAGAAC TTTGGCAAGT 16565 |||||||||| |||||||| | |||||||||| |||| || || ||| |||||| |||||||||| AGAAAGGAGA TGAACCTGCC AGTGAGGATG AGAGAAGAAG AAAAAAGAAC TTTGGCAAGT 60 CCCGATCCGG TCCAAGTTCT GCTGGTTCTA AGCGAATGAA GTTCAGGTAG TTTTGCTGAT 16625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCGATCCGG TCCAAGTTCT GCTGGTTCTA AGCGAATGAA GTTCAGGTAG TTTTGCTGAT 120 TCAATTCCGT CTTAGAACAT TACAAGTAGG TCTTCCTTGG AAGTTTTAGT TAGTTATCAA 16685 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TCAATTCCGT CTTAGAACAT TACAAGTAGG TCTTCCTTGA AAGTTTTAGT TAGTTATCAA 180 GTTCAGTTTT CTCTTGTATA TTACTTCTAA ATTGTTTCTC TTTGCACTCC ACTTTGGGTT 16745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAGTTTT CTCTTGTATA TTACTTCTAA ATTGTTTCTC TTTGCACTCC ACTTTGGGTT 240 GTTAGACGCC GGTGGAGTTT GTCAGACTAG GTTCAGGTTC AAATGTTTCT GTTTACCTTC 16805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAGACGCC GGTGGAGTTT GTCAGACTAG GTTCAGGTTC AAATGTTTCT GTTTACCTTC 300 GTTCAGCTAG ATATCATGTT TTTATGTATG CGTTTACAGT TGGCTGTGCG CGCAAACTTC 16865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAGCTAG ATATCATGTT TTTATGTATG CGTTTACAGT TGGCTGTGCG CGCAAACTTC 360 TCATATTGAA TTCCAACTGG AAACTTCTCC 16895 |||||||||| |||||||||| |||||||||| TCATATTGAA TTCCAACTGG AAACTTCTCC 390 hqPGS_C10SLe0045H11.1+_SGN-E233859- (16506 16895) ******************************************************************************** EST sequence 49 -strand 409 n (File: SGN-E237057-) 1 CGTGCATCAA AATGCAGCAC AAAGCTTAGC AATGCTGAAA TTCATTGGTT TGAGATCCTA 61 AAGTTTGATA AATGTTGACA TGTTAGCAAC CTCCATTCGA TGTAGCTTGC TGATATGATC 121 CTGGTTAGCC CCGTTAACAC AGAAATCATC GCGGAAGGAT CAAAACGTCT GTTGTTTTCC 181 TCTGAAAAAT ATGACTTTTG TGTGTTCTGT TTCCTTTTAC CATATTGGTT TAGTATTTGT 241 TTCCTACAAT GGATGTCTTG TTTTTCCTTT CTTAGAATGT AATATTTGTC AAGCTGTATT 301 TCAATTTTAT GCTTTTCCCC TGCGTTACTC TTTTTAGCTG TTAAATGTAA TACTAAAATA 361 TTTATGCCAT TCATCACTAG TGTCACGTAA AAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 18294 to 16496): Exon 1 17684 17299 ( 386 n); cDNA 1 386 ( 386 n); score: 1.000 PPA cDNA 389 409 MATCH C10SLe0045H11.1- SGN-E237057- 1.000 386 0.944 C PGS_C10SLe0045H11.1-_SGN-E237057- (17684 17299) Alignment (genomic DNA sequence = upper lines): CGTGCATCAA AATGCAGCAC AAAGCTTAGC AATGCTGAAA TTCATTGGTT TGAGATCCTA 17625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGCATCAA AATGCAGCAC AAAGCTTAGC AATGCTGAAA TTCATTGGTT TGAGATCCTA 60 AAGTTTGATA AATGTTGACA TGTTAGCAAC CTCCATTCGA TGTAGCTTGC TGATATGATC 17565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTTGATA AATGTTGACA TGTTAGCAAC CTCCATTCGA TGTAGCTTGC TGATATGATC 120 CTGGTTAGCC CCGTTAACAC AGAAATCATC GCGGAAGGAT CAAAACGTCT GTTGTTTTCC 17505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTTAGCC CCGTTAACAC AGAAATCATC GCGGAAGGAT CAAAACGTCT GTTGTTTTCC 180 TCTGAAAAAT ATGACTTTTG TGTGTTCTGT TTCCTTTTAC CATATTGGTT TAGTATTTGT 17445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGAAAAAT ATGACTTTTG TGTGTTCTGT TTCCTTTTAC CATATTGGTT TAGTATTTGT 240 TTCCTACAAT GGATGTCTTG TTTTTCCTTT CTTAGAATGT AATATTTGTC AAGCTGTATT 17385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTACAAT GGATGTCTTG TTTTTCCTTT CTTAGAATGT AATATTTGTC AAGCTGTATT 300 TCAATTTTAT GCTTTTCCCC TGCGTTACTC TTTTTAGCTG TTAAATGTAA TACTAAAATA 17325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATTTTAT GCTTTTCCCC TGCGTTACTC TTTTTAGCTG TTAAATGTAA TACTAAAATA 360 TTTATGCCAT TCATCACTAG TGTCAC 17299 |||||||||| |||||||||| |||||| TTTATGCCAT TCATCACTAG TGTCAC 386 hqPGS_C10SLe0045H11.1-_SGN-E237057- (17684 17299) ******************************************************************************** EST sequence 50 -strand 355 n (File: SGN-E236870-) 1 ATCCTAAAGT TTGATAAATG TTGACATGTT AGCAACCTCC ATTCGATGTA GCTTGCTGAT 61 ATGATCCTGG TTAGCCCCGT TAACACAGAA ATCATCGCGG AAGGATCAAA ACGTCTGTTG 121 TTTTCCTCTG AAAAATATGA CTTTTGTGTG TTCTGTTTCC TTTTACCATA TTGGTTTAGT 181 ATTTGTTTCC TACAATGGAT GTCTTGTTTT TCCTTTCTTA GAATGTAATA TTTGTCAAGC 241 TGTATTTCAA TTTTATGCTT TTCCCCTGCG TTACTCTTTT TAGCTGTTAA ATGTAATACT 301 AAAATATTTA TGCCATTCAT CACTAGTGTC ACGTAAAAAA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 18240 to 16496): Exon 1 17630 17299 ( 332 n); cDNA 1 332 ( 332 n); score: 1.000 PPA cDNA 335 355 MATCH C10SLe0045H11.1- SGN-E236870- 1.000 332 0.935 C PGS_C10SLe0045H11.1-_SGN-E236870- (17630 17299) Alignment (genomic DNA sequence = upper lines): ATCCTAAAGT TTGATAAATG TTGACATGTT AGCAACCTCC ATTCGATGTA GCTTGCTGAT 17571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTAAAGT TTGATAAATG TTGACATGTT AGCAACCTCC ATTCGATGTA GCTTGCTGAT 60 ATGATCCTGG TTAGCCCCGT TAACACAGAA ATCATCGCGG AAGGATCAAA ACGTCTGTTG 17511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATCCTGG TTAGCCCCGT TAACACAGAA ATCATCGCGG AAGGATCAAA ACGTCTGTTG 120 TTTTCCTCTG AAAAATATGA CTTTTGTGTG TTCTGTTTCC TTTTACCATA TTGGTTTAGT 17451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCTCTG AAAAATATGA CTTTTGTGTG TTCTGTTTCC TTTTACCATA TTGGTTTAGT 180 ATTTGTTTCC TACAATGGAT GTCTTGTTTT TCCTTTCTTA GAATGTAATA TTTGTCAAGC 17391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTTTCC TACAATGGAT GTCTTGTTTT TCCTTTCTTA GAATGTAATA TTTGTCAAGC 240 TGTATTTCAA TTTTATGCTT TTCCCCTGCG TTACTCTTTT TAGCTGTTAA ATGTAATACT 17331 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATTTCAA TTTTATGCTT TTCCCCTGCG TTACTCTTTT TAGCTGTTAA ATGTAATACT 300 AAAATATTTA TGCCATTCAT CACTAGTGTC AC 17299 |||||||||| |||||||||| |||||||||| || AAAATATTTA TGCCATTCAT CACTAGTGTC AC 332 hqPGS_C10SLe0045H11.1-_SGN-E236870- (17630 17299) ******************************************************************************** EST sequence 37 -strand 414 n (File: SGN-E228536-) 1 GGTAAGTTTC TTGGAATCGA AAGGATGATA CATGTTCTCG TTTTCTTTTA AGACCAACTT 61 GTCATTTCGT GCAGCCAATA GCAGCCCAAA GCTTAGCAAT GCTGAATTTC ATTGGTTTGA 121 GATCCTAAAG TTTGATAAAT GTTGACATGT TAGCAACCTC CATTCGATGT AGCTTGCTGA 181 TATGATCCTG GTTAGCCCCG TTAACACAGA AATCATCGCG GAAGGATCAA AACGTCTGTT 241 GTTTTCCTCT GAAAAATATG ACTTTTGTGT GTTCTGTTTC CTTTTACCAT ATTGGTTTAG 301 TATTTGTTTC CTACAATGGA TGTCTTGTTT TTCCTTTCTT AGAATGTAAT ATTTGTCAAA 361 CTGTATTTCA ATTTTATGCT TTTCCCCTTT CTCAAAAAAA AAAAAAAAAA AACT Predicted gene structure (within gDNA segment 18361 to 16504): Exon 1 17751 17364 ( 388 n); cDNA 1 388 ( 388 n); score: 0.982 PPA cDNA 394 413 MATCH C10SLe0045H11.1- SGN-E228536- 0.982 388 0.937 C PGS_C10SLe0045H11.1-_SGN-E228536- (17751 17364) Alignment (genomic DNA sequence = upper lines): GGTAAGTTTC TTGGAATCGA AAGGATGATA CATGTTCTCG TTTTCTTTTA AGACCAACTT 17692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAAGTTTC TTGGAATCGA AAGGATGATA CATGTTCTCG TTTTCTTTTA AGACCAACTT 60 GTCATTTCGT GCATCAAAAT GCAGCACAAA GCTTAGCAAT GCTGAAATTC ATTGGTTTGA 17632 |||||||||| ||| | || ||||| |||| |||||||||| |||||| ||| |||||||||| GTCATTTCGT GCAGCCAATA GCAGCCCAAA GCTTAGCAAT GCTGAATTTC ATTGGTTTGA 120 GATCCTAAAG TTTGATAAAT GTTGACATGT TAGCAACCTC CATTCGATGT AGCTTGCTGA 17572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCCTAAAG TTTGATAAAT GTTGACATGT TAGCAACCTC CATTCGATGT AGCTTGCTGA 180 TATGATCCTG GTTAGCCCCG TTAACACAGA AATCATCGCG GAAGGATCAA AACGTCTGTT 17512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGATCCTG GTTAGCCCCG TTAACACAGA AATCATCGCG GAAGGATCAA AACGTCTGTT 240 GTTTTCCTCT GAAAAATATG ACTTTTGTGT GTTCTGTTTC CTTTTACCAT ATTGGTTTAG 17452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTCCTCT GAAAAATATG ACTTTTGTGT GTTCTGTTTC CTTTTACCAT ATTGGTTTAG 300 TATTTGTTTC CTACAATGGA TGTCTTGTTT TTCCTTTCTT AGAATGTAAT ATTTGTCAAG 17392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TATTTGTTTC CTACAATGGA TGTCTTGTTT TTCCTTTCTT AGAATGTAAT ATTTGTCAAA 360 CTGTATTTCA ATTTTATGCT TTTCCCCT 17364 |||||||||| |||||||||| |||||||| CTGTATTTCA ATTTTATGCT TTTCCCCT 388 hqPGS_C10SLe0045H11.1-_SGN-E228536- (17751 17364) ******************************************************************************** EST sequence 136 +strand 766 n (File: SGN-E334591+) 1 ATAACTGCTG CCTTAGGCCT TTGCTTAGAG AAGATGTCTA AAGAAGATTT AGATGCAACC 61 AAGGATGCAA TGCACTGTAT TCTTGAAGGA GTGAGCTGTA GGTTGGGAAG TACTGACCAT 121 TTGATTCGAA AAATGGCTAG CAGTGTTGCA TTAGCATTTT CCAAAGTAAT TGACCCCCAA 181 AATCCTCTCT ACCTTGACGA TAGTTGCCGT GAGGAAGCTA TTGACTGGGA CTTTGGTTTA 241 TTAACCCCAG AAAAAAAGAT TATTGGCTAG GCCCACAGAC ATAGATGGAA ATAAGGGTTG 301 TTCAACCACA GCAGCTGGAA AGGTCAATAT AGCTGCCAGC AGACATGATA ATAAGATGAC 361 TAAAAAGAAG AAATTATTTG GATATGAAGC TGTTGATCCA GATGAGATCA TTGATCCAGC 421 ATCCCTAAAT AATGAGGTTG ACTCTAGTAA AGATGATGAT GATAATGCAA GTGAAACTTC 481 CGAGTCCTCG AATGACTCGT CTTTGCAGCC ATATGACTTG TCAGATGATG GTGCAGATCT 541 AAAAAGAAAT TTCTCACAGT TAGTGGATGT GATTGGAGCA CTAAGGAAAT CTGATGATGC 601 TGATGGTGTG AGTTCAAAAT TCTTATATCC ATATATCAGA CAATCTGTAG AGTGTTAATT 661 TTGTCATCCT TCTAAGAAAT GAANCAGCTT TGATGCCCTT TTTGTTTCTA TGAATGATCT 721 GTACCAGCGT ATAGTAGAAC GAGAATTGAT CAGATAACTA TAAGCT Predicted gene structure (within gDNA segment 21748 to 19677): Exon 1 21148 21052 ( 97 n); cDNA 1 97 ( 97 n); score: 1.000 Intron 1 21051 20955 ( 97 n); Pd: 0.921 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 20954 20287 ( 668 n); cDNA 98 766 ( 669 n); score: 0.993 MATCH C10SLe0045H11.1- SGN-E334591+ 0.994 765 0.999 C PGS_C10SLe0045H11.1-_SGN-E334591+ (21148 21052,20954 20287) Alignment (genomic DNA sequence = upper lines): ATAACTGCTG CCTTAGGCCT TTGCTTAGAG AAGATGTCTA AAGAAGATTT AGATGCAACC 21089 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACTGCTG CCTTAGGCCT TTGCTTAGAG AAGATGTCTA AAGAAGATTT AGATGCAACC 60 AAGGATGCAA TGCACTGTAT TCTTGAAGGA GTGAGCTGTA AAATTTCGCT CTTACTGCTA 21029 |||||||||| |||||||||| |||||||||| ||||||| AAGGATGCAA TGCACTGTAT TCTTGAAGGA GTGAGCT... .......... .......... 97 TTCAACAATA TCTTTCTGGA TGAACATTAA CTAGTTGATT TAATTCTTCT TATATTTTTT 20969 .......... .......... .......... .......... .......... .......... 97 ATGGTTGCTA ACAGGTAGGT TGGGAAGTAC TGACCATTTG ATTCGAAAAA TGGCTAGCAG 20909 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTAGGT TGGGAAGTAC TGACCATTTG ATTCGAAAAA TGGCTAGCAG 143 TGTTGCATTA GCATTTTCCA AAGTAATTGA CCCCCAAAAT CCTCTCTACC TTGACGATAG 20849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGCATTA GCATTTTCCA AAGTAATTGA CCCCCAAAAT CCTCTCTACC TTGACGATAG 203 TTGCCGTGAG GAAGCTATTG ACTGGGACTT TGGTTTATTA ACCCCAG-AA AAAAGATTAT 20790 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| TTGCCGTGAG GAAGCTATTG ACTGGGACTT TGGTTTATTA ACCCCAGAAA AAAAGATTAT 263 TGGCTAGGCC CACAGACATA GATGGAAATA AGGGTTGTTC AACCACAGCA GCTGGAAAGG 20730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTAGGCC CACAGACATA GATGGAAATA AGGGTTGTTC AACCACAGCA GCTGGAAAGG 323 TCAATATAGC TGCCAGCAGA CATGATAATA AGATGACTAA AAAGAAGAAA TTATTTGGAT 20670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATATAGC TGCCAGCAGA CATGATAATA AGATGACTAA AAAGAAGAAA TTATTTGGAT 383 ATGAAGCTGT TGATCCAGAT GAGATCATTG ATCCAGCATC CCTAAATAAT GAGGTTGACT 20610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGCTGT TGATCCAGAT GAGATCATTG ATCCAGCATC CCTAAATAAT GAGGTTGACT 443 CTAGTAAAGA TGATGATGAT AATGCAAGTG AAACTTCCGA GTCCTCGAAT GACTCGTCTT 20550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGTAAAGA TGATGATGAT AATGCAAGTG AAACTTCCGA GTCCTCGAAT GACTCGTCTT 503 TGCAGCCATA TGACTTGTCA GATGATGGTG CAGATCTAAA AAGAAATTTC TCACAGTTAG 20490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCCATA TGACTTGTCA GATGATGGTG CAGATCTAAA AAGAAATTTC TCACAGTTAG 563 TGGATGTGAT TGGAGCACTA AGGAAATCTG ATGATGCTGA TGGTGTGAGT TCAAAATTCT 20430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATGTGAT TGGAGCACTA AGGAAATCTG ATGATGCTGA TGGTGTGAGT TCAAAATTCT 623 TATATCCATA TATCAGACAA TCTGTAGAGT GTTAATTTTG TCATCCTTCT AAGAAATGAA 20370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATCCATA TATCAGACAA TCTGTAGAGT GTTAATTTTG TCATCCTTCT AAGAAATGAA 683 CAAGCTTTGA TGCCCTTTTT GTTTCTATGA ATGATCTGTA CCAGCGTATA GTAGAACGAG 20310 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| NCAGCTTTGA TGCCCTTTTT GTTTCTATGA ATGATCTGTA CCAGCGTATA GTAGAACGAG 743 AATTGATCAG ATAACTATAA GCT 20287 |||||||||| |||||||||| ||| AATTGATCAG ATAACTATAA GCT 766 hqPGS_C10SLe0045H11.1-_SGN-E334591+ (21148 21052,20954 20287) ******************************************************************************** EST sequence 125 +strand 732 n (File: SGN-E332654+) 1 ATAACTGCTG CCTTAGGCCT TTGCTTAGAG AAGATGTCTA AAGAAGATTT AGATGCAACC 61 AAGGATGCAA TGCACTGTAT TCTTGAAGGA GTGAGCTGTA GGTTGGGAAG TACTGACCAT 121 TTGATTCGAA AAATGGCTAG CAGTGTTGCA TTAGCATTTT CCAAAGTAAT TGACCCCCAA 181 AATCCTCTCT ACCTTGACGA TAGTTGCCGT GAGGAAGCTA TTGACTGGGA CTTTGGTTTA 241 TTAACCCCAG AAAAAAAGAT TATTGGCTAG GCCCACAGAC ATAGATGGAA ATAAGGGTTG 301 TTCAACCACA GCAGCTGGAA AGGTCAATAT AGCTGCCAGC AGACATGATA ATAAGATGAC 361 TAAAAAGAAG AAATTATTTG GATATGAAGC TGTTGATCCA GATGAGATCA TTGATCCAGC 421 ATCCCTAAAT AATGAGGTTG ACTCTAGTAA AGATGATGAT GATAATGCAA GTGAAACTTC 481 CGAGTCCTCG AATGACTCGT CTTTGCAGCC ATATGACTTG TCAGATGATG GTGCAGATCT 541 AAAAAGAAAT TTCTCACAGT TAGTGGATGT GATTGGAGCA CTAAGGAAAT CTGATGATGC 601 TGATGGTGTG AGTTCAAAAT TCTTATATCC ATATATCAGA CAATCTGTAG AGTGTTAATT 661 TTGTCATCCT TCTAAGAAAT GAACNAGCTT TGATGCCCTT TTTTGTTCTA TGAATGATCT 721 GTACCAGCGT AT Predicted gene structure (within gDNA segment 21748 to 19711): Exon 1 21148 21052 ( 97 n); cDNA 1 97 ( 97 n); score: 1.000 Intron 1 21051 20955 ( 97 n); Pd: 0.921 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 20954 20321 ( 634 n); cDNA 98 732 ( 635 n); score: 0.991 MATCH C10SLe0045H11.1- SGN-E332654+ 0.992 731 0.999 C PGS_C10SLe0045H11.1-_SGN-E332654+ (21148 21052,20954 20321) Alignment (genomic DNA sequence = upper lines): ATAACTGCTG CCTTAGGCCT TTGCTTAGAG AAGATGTCTA AAGAAGATTT AGATGCAACC 21089 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACTGCTG CCTTAGGCCT TTGCTTAGAG AAGATGTCTA AAGAAGATTT AGATGCAACC 60 AAGGATGCAA TGCACTGTAT TCTTGAAGGA GTGAGCTGTA AAATTTCGCT CTTACTGCTA 21029 |||||||||| |||||||||| |||||||||| ||||||| AAGGATGCAA TGCACTGTAT TCTTGAAGGA GTGAGCT... .......... .......... 97 TTCAACAATA TCTTTCTGGA TGAACATTAA CTAGTTGATT TAATTCTTCT TATATTTTTT 20969 .......... .......... .......... .......... .......... .......... 97 ATGGTTGCTA ACAGGTAGGT TGGGAAGTAC TGACCATTTG ATTCGAAAAA TGGCTAGCAG 20909 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTAGGT TGGGAAGTAC TGACCATTTG ATTCGAAAAA TGGCTAGCAG 143 TGTTGCATTA GCATTTTCCA AAGTAATTGA CCCCCAAAAT CCTCTCTACC TTGACGATAG 20849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGCATTA GCATTTTCCA AAGTAATTGA CCCCCAAAAT CCTCTCTACC TTGACGATAG 203 TTGCCGTGAG GAAGCTATTG ACTGGGACTT TGGTTTATTA ACCCCAG-AA AAAAGATTAT 20790 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| TTGCCGTGAG GAAGCTATTG ACTGGGACTT TGGTTTATTA ACCCCAGAAA AAAAGATTAT 263 TGGCTAGGCC CACAGACATA GATGGAAATA AGGGTTGTTC AACCACAGCA GCTGGAAAGG 20730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTAGGCC CACAGACATA GATGGAAATA AGGGTTGTTC AACCACAGCA GCTGGAAAGG 323 TCAATATAGC TGCCAGCAGA CATGATAATA AGATGACTAA AAAGAAGAAA TTATTTGGAT 20670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATATAGC TGCCAGCAGA CATGATAATA AGATGACTAA AAAGAAGAAA TTATTTGGAT 383 ATGAAGCTGT TGATCCAGAT GAGATCATTG ATCCAGCATC CCTAAATAAT GAGGTTGACT 20610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGCTGT TGATCCAGAT GAGATCATTG ATCCAGCATC CCTAAATAAT GAGGTTGACT 443 CTAGTAAAGA TGATGATGAT AATGCAAGTG AAACTTCCGA GTCCTCGAAT GACTCGTCTT 20550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGTAAAGA TGATGATGAT AATGCAAGTG AAACTTCCGA GTCCTCGAAT GACTCGTCTT 503 TGCAGCCATA TGACTTGTCA GATGATGGTG CAGATCTAAA AAGAAATTTC TCACAGTTAG 20490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCCATA TGACTTGTCA GATGATGGTG CAGATCTAAA AAGAAATTTC TCACAGTTAG 563 TGGATGTGAT TGGAGCACTA AGGAAATCTG ATGATGCTGA TGGTGTGAGT TCAAAATTCT 20430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATGTGAT TGGAGCACTA AGGAAATCTG ATGATGCTGA TGGTGTGAGT TCAAAATTCT 623 TATATCCATA TATCAGACAA TCTGTAGAGT GTTAATTTTG TCATCCTTCT AAGAAATGAA 20370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATCCATA TATCAGACAA TCTGTAGAGT GTTAATTTTG TCATCCTTCT AAGAAATGAA 683 CAAGCTTTGA TGCCCTTTTT GTTTCTATGA ATGATCTGTA CCAGCGTAT 20321 | |||||||| |||||||||| |||||||| |||||||||| ||||||||| CNAGCTTTGA TGCCCTTTTT TGTTCTATGA ATGATCTGTA CCAGCGTAT 732 hqPGS_C10SLe0045H11.1-_SGN-E332654+ (21148 21052,20954 20321) ******************************************************************************** EST sequence 128 +strand 538 n (File: SGN-E245577+) 1 AAGGATGCAA TGCACTGTAT TCTTGAAGGA GTGAGCTGTA GGTTGGGAAG TACTGACCAT 61 TTGATTCGAA AAATGGCTAG CAGTGTTGCA TTAGCATTTT CCAAAGTAAT TGACCCCCAA 121 AATCCTCTCT ACCTTGACGA TAGTTGCCGT GAGGAAGCTA TTGACTGGGA CTTTGGTTTA 181 TTAACCCCAG AAAAAAGATT ATTGGCTAGG CCCACAGACA TAGATGGAAA TAAGGGTTGT 241 TCAACCACAG CAGCTGGAAA GGTCAATATA GCTGCCAGCA GACATGATAA TAAGATGACT 301 AAAAAGAAGA AATTATTTGG ATATGAAGCT GTTGATCCAG ATGAGATCAT TGATCCAGCA 361 TCCCTAAATA ATGAGGTTGA CTCTAGTAAA GATGATGATG ATAATGCAAG TGAAACTTCC 421 GAGTCCTCGA ATGACTCGTC TTTGCAGCCA TATGACTTGT CAGATGATGG TGCAGATCTA 481 AAAAGAAATT TCTCACAGTT AGTGGATGTG ATTGGAGCAC TAAGGAAATC TGATGATG Predicted gene structure (within gDNA segment 21688 to 19844): Exon 1 21088 21052 ( 37 n); cDNA 1 37 ( 37 n); score: 1.000 Intron 1 21051 20955 ( 97 n); Pd: 0.921 (s: 0), Pa: 0.998 (s: 1.00) Exon 2 20954 20454 ( 501 n); cDNA 38 538 ( 501 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E245577+ 1.000 538 1.000 C PGS_C10SLe0045H11.1-_SGN-E245577+ (21088 21052,20954 20454) Alignment (genomic DNA sequence = upper lines): AAGGATGCAA TGCACTGTAT TCTTGAAGGA GTGAGCTGTA AAATTTCGCT CTTACTGCTA 21029 |||||||||| |||||||||| |||||||||| ||||||| AAGGATGCAA TGCACTGTAT TCTTGAAGGA GTGAGCT... .......... .......... 37 TTCAACAATA TCTTTCTGGA TGAACATTAA CTAGTTGATT TAATTCTTCT TATATTTTTT 20969 .......... .......... .......... .......... .......... .......... 37 ATGGTTGCTA ACAGGTAGGT TGGGAAGTAC TGACCATTTG ATTCGAAAAA TGGCTAGCAG 20909 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTAGGT TGGGAAGTAC TGACCATTTG ATTCGAAAAA TGGCTAGCAG 83 TGTTGCATTA GCATTTTCCA AAGTAATTGA CCCCCAAAAT CCTCTCTACC TTGACGATAG 20849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGCATTA GCATTTTCCA AAGTAATTGA CCCCCAAAAT CCTCTCTACC TTGACGATAG 143 TTGCCGTGAG GAAGCTATTG ACTGGGACTT TGGTTTATTA ACCCCAGAAA AAAGATTATT 20789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCGTGAG GAAGCTATTG ACTGGGACTT TGGTTTATTA ACCCCAGAAA AAAGATTATT 203 GGCTAGGCCC ACAGACATAG ATGGAAATAA GGGTTGTTCA ACCACAGCAG CTGGAAAGGT 20729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTAGGCCC ACAGACATAG ATGGAAATAA GGGTTGTTCA ACCACAGCAG CTGGAAAGGT 263 CAATATAGCT GCCAGCAGAC ATGATAATAA GATGACTAAA AAGAAGAAAT TATTTGGATA 20669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATAGCT GCCAGCAGAC ATGATAATAA GATGACTAAA AAGAAGAAAT TATTTGGATA 323 TGAAGCTGTT GATCCAGATG AGATCATTGA TCCAGCATCC CTAAATAATG AGGTTGACTC 20609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCTGTT GATCCAGATG AGATCATTGA TCCAGCATCC CTAAATAATG AGGTTGACTC 383 TAGTAAAGAT GATGATGATA ATGCAAGTGA AACTTCCGAG TCCTCGAATG ACTCGTCTTT 20549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTAAAGAT GATGATGATA ATGCAAGTGA AACTTCCGAG TCCTCGAATG ACTCGTCTTT 443 GCAGCCATAT GACTTGTCAG ATGATGGTGC AGATCTAAAA AGAAATTTCT CACAGTTAGT 20489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCCATAT GACTTGTCAG ATGATGGTGC AGATCTAAAA AGAAATTTCT CACAGTTAGT 503 GGATGTGATT GGAGCACTAA GGAAATCTGA TGATG 20454 |||||||||| |||||||||| |||||||||| ||||| GGATGTGATT GGAGCACTAA GGAAATCTGA TGATG 538 hqPGS_C10SLe0045H11.1-_SGN-E245577+ (21088 21052,20954 20454) ******************************************************************************** EST sequence 39 +strand 655 n (File: SGN-E353553+) 1 CCTCCTGCTG GAGTTCTTTA AGGCTGTGGC ACTTCGAGAT GGCCGCACTG CTGCAGAAAG 61 TACTCTTGGA CTATCTAAAC AACAGAGCTG TCCGAACCCA GAGGAATTCA TCAAGGATGT 121 GGAGGGAACT TTTGACTTCT GGAAGACAGC TGAAGGGGAT GGCATTCATC CGGCAGATTG 181 CATGCAACAA TTGCTTGAGC AAGTTAGACG TCATCGGGTG AACATTGATG GCAACATTTG 241 CACTGTGATT GTGACTACTT TGGTGTTGGA GGGATGGCAG CGGAAACTGG ACCCTGAATA 301 CGACGTGCTA CAGACACTGC AAAAGTTGCT TTTCAAAGAC GATTGGGCAG AGTCTCTCTT 361 TCACACAATT GGAGGGTTGA TGGCGCCATA AAAAAGGTGT CTCATTTGCT CGCTTCCCCG 421 CCCCACCCAG CCTACCTAAA ACAATCCCAC AATTTTGATG GAGTAATATA TAGTAAAGGG 481 AAGATAAGTG AAATATACAC ACAGCATCTG GCTTTAGAGA ATAAGGATTG TATACCTTTC 541 ACTCTTTTTC GTTTTAGATT TTACAATTAG ATTAGTTCTA ACCTTGATAT CATTGTTTCT 601 TATTTATTTT TCGTCACAGT GTGAGACGAT AATAAGTACT TATCAAGAAT GTATT Predicted gene structure (within gDNA segment 29786 to 32990): Exon 1 30386 30500 ( 115 n); cDNA 1 115 ( 115 n); score: 1.000 Intron 1 30501 31139 ( 639 n); Pd: 0.970 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 31140 31295 ( 156 n); cDNA 116 271 ( 156 n); score: 1.000 Intron 2 31296 31996 ( 701 n); Pd: 0.929 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 31997 32380 ( 384 n); cDNA 272 655 ( 384 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E353553+ 1.000 655 1.000 C PGS_C10SLe0045H11.1+_SGN-E353553+ (30386 30500,31140 31295,31997 32380) Alignment (genomic DNA sequence = upper lines): CCTCCTGCTG GAGTTCTTTA AGGCTGTGGC ACTTCGAGAT GGCCGCACTG CTGCAGAAAG 30445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCTGCTG GAGTTCTTTA AGGCTGTGGC ACTTCGAGAT GGCCGCACTG CTGCAGAAAG 60 TACTCTTGGA CTATCTAAAC AACAGAGCTG TCCGAACCCA GAGGAATTCA TCAAGGTGCT 30505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TACTCTTGGA CTATCTAAAC AACAGAGCTG TCCGAACCCA GAGGAATTCA TCAAG..... 115 TTCTTATTTT TTGCTGTAAA AGAATGATGA AGTCCATAAT TGTACAATGT TGGCAGACTG 30565 .......... .......... .......... .......... .......... .......... 115 TTGATTACTT GATTCTCATT AGTCGATTAA TTGTCCAAGA AGGAAAAGCT AAATCGGTAT 30625 .......... .......... .......... .......... .......... .......... 115 CTTACTTCGC ATCTTGCATT TTCGTTTAAC TTGACTTCAA GTGCAGTGCA TATGTTACAC 30685 .......... .......... .......... .......... .......... .......... 115 CTCTTTCAGG GATAATAAAA GGAAGCATAA AAGCCATCCT CTATCATCTT GTCTTAGGTC 30745 .......... .......... .......... .......... .......... .......... 115 CATATATGAA TATGTCAAAT ATACTTACAA GTGATTCATT TTTCTATAAG TTTGTCTTCC 30805 .......... .......... .......... .......... .......... .......... 115 TTGCACGGGA TGGTGCTACC ACACCACCAT GTATCTGTGG CAAATTTTTT GATGCAGCAT 30865 .......... .......... .......... .......... .......... .......... 115 GTACATATGC CATAAAAATA ATAGAATTTT TAAAAAGAGA GGAGATGCAC AGTTATATAG 30925 .......... .......... .......... .......... .......... .......... 115 GTGAAAGACG TCCCAAGTGA AGCAGCTCCA TGATGCTTGC TTGTGTGAAC TGTGAAGATG 30985 .......... .......... .......... .......... .......... .......... 115 AGAATCAATT GTAAAAGCTT TTGTCCCACT TATTATATGT CTGATGAGAT ACAAACACTC 31045 .......... .......... .......... .......... .......... .......... 115 ATTTTTAAGT CTCTTTAGTG AACTATGTCA AAAACCCCAA ATTTTTTTAG ATTCATGTCT 31105 .......... .......... .......... .......... .......... .......... 115 TTGTTGAATA ACATAATGTA GATTTTGGTA ATAGGATGTG GAGGGAACTT TTGACTTCTG 31165 |||||| |||||||||| |||||||||| .......... .......... .......... ....GATGTG GAGGGAACTT TTGACTTCTG 141 GAAGACAGCT GAAGGGGATG GCATTCATCC GGCAGATTGC ATGCAACAAT TGCTTGAGCA 31225 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGACAGCT GAAGGGGATG GCATTCATCC GGCAGATTGC ATGCAACAAT TGCTTGAGCA 201 AGTTAGACGT CATCGGGTGA ACATTGATGG CAACATTTGC ACTGTGATTG TGACTACTTT 31285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTAGACGT CATCGGGTGA ACATTGATGG CAACATTTGC ACTGTGATTG TGACTACTTT 261 GGTGTTGGAG GTACCTTTTG GCCTTATTTG ATGCTTTTAC CGTCTGATAA CTCAGCGCTG 31345 |||||||||| GGTGTTGGAG .......... .......... .......... .......... .......... 271 CACAGACTTG TCTGCTATAT TCCTATATTA ACTTATCCTG TTTTAATGGT TCTTATGATC 31405 .......... .......... .......... .......... .......... .......... 271 TATTATGTGT TCTGGGAATG TCTGCGTCTA TCTTTCTCAA GTATTATCTG GATTCTGATA 31465 .......... .......... .......... .......... .......... .......... 271 AAAAATCTGC CGAATGTGAT TGTTGAAATT TAGTTATCAG TAAAGCTAGC CCAAAATAAT 31525 .......... .......... .......... .......... .......... .......... 271 TATCCCATAC TACATTTTCT ATTGATAACC CAACCACAGA AGTAGATGCT TGAGAAGCAT 31585 .......... .......... .......... .......... .......... .......... 271 CCAAGGGTAT GACCTAGTGG TCTATGAAGT GGGTTGAGAA CCCTGAGGTC TCAGGTTTAA 31645 .......... .......... .......... .......... .......... .......... 271 ATCCCAACAC AAAAACACTA GGTAATTTCT TCCCATTTGT CCTAGCCTTG GTGGACAGAG 31705 .......... .......... .......... .......... .......... .......... 271 TTACCTAGTA CTTGTTACTG GTGGAAGGTG GCAGGCTTCC GTGGAATTAG TTGAGGCCGG 31765 .......... .......... .......... .......... .......... .......... 271 ATACCATGAT TATTAAAAGA AAAAAGATGG ATGTTATCTC TGATCTATTC TTCTTTTGAT 31825 .......... .......... .......... .......... .......... .......... 271 TTAACGTATC CCACTTTCCT CTTTCCTCTC TCCTTCTAGA TTTTTCTTCC CATGCCCTAT 31885 .......... .......... .......... .......... .......... .......... 271 TCTACATGAT TCATCCTCCC CCTATTTTTC TTCCAAATGC TAATAGAACG AAAAGCTTAG 31945 .......... .......... .......... .......... .......... .......... 271 GGTAATAATT TGTTTGAACA TATACCATGA TGCTTTTCTG TCTTCCTACA GGGATGGCAG 32005 ||||||||| .......... .......... .......... .......... .......... .GGATGGCAG 280 CGGAAACTGG ACCCTGAATA CGACGTGCTA CAGACACTGC AAAAGTTGCT TTTCAAAGAC 32065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAAACTGG ACCCTGAATA CGACGTGCTA CAGACACTGC AAAAGTTGCT TTTCAAAGAC 340 GATTGGGCAG AGTCTCTCTT TCACACAATT GGAGGGTTGA TGGCGCCATA AAAAAGGTGT 32125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGGGCAG AGTCTCTCTT TCACACAATT GGAGGGTTGA TGGCGCCATA AAAAAGGTGT 400 CTCATTTGCT CGCTTCCCCG CCCCACCCAG CCTACCTAAA ACAATCCCAC AATTTTGATG 32185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCATTTGCT CGCTTCCCCG CCCCACCCAG CCTACCTAAA ACAATCCCAC AATTTTGATG 460 GAGTAATATA TAGTAAAGGG AAGATAAGTG AAATATACAC ACAGCATCTG GCTTTAGAGA 32245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTAATATA TAGTAAAGGG AAGATAAGTG AAATATACAC ACAGCATCTG GCTTTAGAGA 520 ATAAGGATTG TATACCTTTC ACTCTTTTTC GTTTTAGATT TTACAATTAG ATTAGTTCTA 32305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGGATTG TATACCTTTC ACTCTTTTTC GTTTTAGATT TTACAATTAG ATTAGTTCTA 580 ACCTTGATAT CATTGTTTCT TATTTATTTT TCGTCACAGT GTGAGACGAT AATAAGTACT 32365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTGATAT CATTGTTTCT TATTTATTTT TCGTCACAGT GTGAGACGAT AATAAGTACT 640 TATCAAGAAT GTATT 32380 |||||||||| ||||| TATCAAGAAT GTATT 655 hqPGS_C10SLe0045H11.1+_SGN-E353553+ (30386 30500,31140 31295,31997 32380) ******************************************************************************** EST sequence 29 -strand 739 n (File: SGN-E548411-) 1 AGAGAACATA TGTGATCGTG TCAAGTCATT GATTTTCACT AAGGGGGAAA CAGTATCTAG 61 AGAGGGTGAT CCAGTACAAA GAATGTTATT TATTGTAAGA GGACACCTTC AAAGTAGCCA 121 ATATTTACGA GATGGTGTCA AAAGTTATTG CATGTTAGGC CCTGGAAATT TTAGTGGAGA 181 TGAACTTTTG TCCTGGTGTC TCCGGCGACC TTTCGTCGAG CGGTTGCCAC CGTCCTCCTC 241 CACGTTGGTG ACCCTCGAGA CCACCGAGGC CTTCGGCCTC GAGGCCGAAG ACGTCAAGTA 301 TGTGACACAA CATTTCAGAT ATACATTTGT GGATGAGAAA GTGAAGAGAA GTGCAAGGTA 361 TTATTCACCA GGGTGGAGAA CTTGGGGTGC TGTTGCTATT CAATTAGCTT GGAGAAGATA 421 TAAACATCGT TTGACACTTT CTTCTTTGTC TTTTATTAGA CCAAGAAGGC CATTGTCTCG 481 TTGTTCGTCG CTCGGGGAGA ATCGTCTAAG ACTATATACT GCGTTGTTGA CTTCACCAAA 541 ACCTAACCTA GATGATTTTG ATTTTTAATT TTTTTTTTTA AAAAATAAAT AATATAATAA 601 TAAGTCATAT GTACTTATGT ATATTTATAA TTAGGTTGTG ATTAACACTT AATGAGATAC 661 TACACATGAT GGTCTCATGA TATACATGAA TTTGGTTATT TTTTGTGAAA AAAAAAAAAA 721 AAAAAAAAAA AAAAAAGAA Predicted gene structure (within gDNA segment 37919 to 34800): Exon 1 37309 37258 ( 52 n); cDNA 1 52 ( 52 n); score: 1.000 Intron 1 37257 37124 ( 134 n); Pd: 0.978 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 2 37123 36858 ( 266 n); cDNA 53 318 ( 266 n); score: 1.000 Intron 2 36857 36108 ( 750 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 36107 35721 ( 387 n); cDNA 319 706 ( 388 n); score: 0.994 PPA cDNA 708 739 MATCH C10SLe0045H11.1- SGN-E548411- 0.996 705 0.954 C PGS_C10SLe0045H11.1-_SGN-E548411- (37309 37258,37123 36858,36107 35721) Alignment (genomic DNA sequence = upper lines): AGAGAACATA TGTGATCGTG TCAAGTCATT GATTTTCACT AAGGGGGAAA CAGTAAGTTT 37250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AGAGAACATA TGTGATCGTG TCAAGTCATT GATTTTCACT AAGGGGGAAA CA........ 52 GAGTCATAGC AATGAATATC AAATTTCTAA TATCTAACTA TTTTTTTTAG TTAATTTATC 37190 .......... .......... .......... .......... .......... .......... 52 GCTCCAAATA AAATTAATGA TAAATTTTAC TGTTTAGCTA AAAAAAAATT TAATTTTTTT 37130 .......... .......... .......... .......... .......... .......... 52 TTTTAGGTAT CTAGAGAGGG TGATCCAGTA CAAAGAATGT TATTTATTGT AAGAGGACAC 37070 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GTAT CTAGAGAGGG TGATCCAGTA CAAAGAATGT TATTTATTGT AAGAGGACAC 106 CTTCAAAGTA GCCAATATTT ACGAGATGGT GTCAAAAGTT ATTGCATGTT AGGCCCTGGA 37010 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAAAGTA GCCAATATTT ACGAGATGGT GTCAAAAGTT ATTGCATGTT AGGCCCTGGA 166 AATTTTAGTG GAGATGAACT TTTGTCCTGG TGTCTCCGGC GACCTTTCGT CGAGCGGTTG 36950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTAGTG GAGATGAACT TTTGTCCTGG TGTCTCCGGC GACCTTTCGT CGAGCGGTTG 226 CCACCGTCCT CCTCCACGTT GGTGACCCTC GAGACCACCG AGGCCTTCGG CCTCGAGGCC 36890 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACCGTCCT CCTCCACGTT GGTGACCCTC GAGACCACCG AGGCCTTCGG CCTCGAGGCC 286 GAAGACGTCA AGTATGTGAC ACAACATTTC AGGTACATCA TCGTATTTCA GTTACGTGTT 36830 |||||||||| |||||||||| |||||||||| || GAAGACGTCA AGTATGTGAC ACAACATTTC AG........ .......... .......... 318 CAACTGAATT CAATATATTA TCTATGTGTT TTAAGAAGTA TACATTTTAT TTGTGATGGA 36770 .......... .......... .......... .......... .......... .......... 318 AGAATATAAG CGTAACAAAT TTATTTTGAA AAAATTTACC CGCACTAGGT ATTTTACATC 36710 .......... .......... .......... .......... .......... .......... 318 AAGTCAATAT AATTTTTATT ATTACGTGAT TTAATGAAGT AAAACACATG TCAATTAATT 36650 .......... .......... .......... .......... .......... .......... 318 ATGATTAAGT AAAATTAACT ATAAATTTAA ACACGTGCCA TGCATGTATT GACTTGATGT 36590 .......... .......... .......... .......... .......... .......... 318 AAACACCCGA TGCGGATAAA TTTTACCCGT TATAAACTCA TCTTAAATCT ATTGCATTTT 36530 .......... .......... .......... .......... .......... .......... 318 TCTTGTAATG GATCGGTCAT AATTTTGCTT TTTTTTTTCT TGTTATGCAT GTGAAAAATG 36470 .......... .......... .......... .......... .......... .......... 318 ATGCTTATAA AATAAATTCA GTATTTTCTA CGCAAAACAT AAAATATATA ATTTTTTCAC 36410 .......... .......... .......... .......... .......... .......... 318 CTATAGATAT AGGTAAAAAT CACAAAACTT TATCATTTTT CCCTTTTTAT ATGAAATATT 36350 .......... .......... .......... .......... .......... .......... 318 ACTAAATATT TTGAGTTATT AACTACGTTG ACTTATATAG TTTTAAATAT ATAACTTATG 36290 .......... .......... .......... .......... .......... .......... 318 TTCAACTATA CACTTAGAAT ATGTAGTTCG TTATTTATTG ATGGATTTTT CAAAATTTTT 36230 .......... .......... .......... .......... .......... .......... 318 ATCATTTTTC CCTTCACATA AACTTGTATT AGATTCTGAA TTCATAATTT CAAAAGTAAA 36170 .......... .......... .......... .......... .......... .......... 318 TATATATTAA TTATATTTGA CGTCAAAAAT TTTATCGAGT TTAAATTTTG AATCCGTCTC 36110 .......... .......... .......... .......... .......... .......... 318 AGATATACAT TTGTGGATGA GAAAGTGAAG AGAAGTGCAA GGTATTATTC ACCAGGGTGG 36050 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..ATATACAT TTGTGGATGA GAAAGTGAAG AGAAGTGCAA GGTATTATTC ACCAGGGTGG 376 AGAACTTGGG GTGCTGTTGC TATTCAATTA GCTTGGAGAA GATATAAACA TCGTTTGACA 35990 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACTTGGG GTGCTGTTGC TATTCAATTA GCTTGGAGAA GATATAAACA TCGTTTGACA 436 CTTTCTTCTT TGTCTTTTAT TAGACCAAGA AGGCCATTGT CTCGTTGTTC GTCGCTCGGG 35930 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTTCTT TGTCTTTTAT TAGACCAAGA AGGCCATTGT CTCGTTGTTC GTCGCTCGGG 496 GAGAATCGTC TAAGACTATA TACTGCGTTG TTGACTTCAC CAAAACCTAA CCTAGATGAT 35870 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAATCGTC TAAGACTATA TACTGCGTTG TTGACTTCAC CAAAACCTAA CCTAGATGAT 556 TTTGATTTTT AA-TTTTTTT TTTAAAAAAT AAATAATATA ATAATAAGTC ATATGTACTT 35811 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATTTTT AATTTTTTTT TTTAAAAAAT AAATAATATA ATAATAAGTC ATATGTACTT 616 ATGTATATTT ATAATTAGGT TGTGATTAAC ACTTAATGAG ATACTACACA TGATGGTCTC 35751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTATATTT ATAATTAGGT TGTGATTAAC ACTTAATGAG ATACTACACA TGATGGTCTC 676 ATGATATACA TGAATTTGGT TATTTTTTGT 35721 |||||||||| |||||||||| |||||||||| ATGATATACA TGAATTTGGT TATTTTTTGT 706 hqPGS_C10SLe0045H11.1-_SGN-E548411- (37309 37258,37123 36858,36107 35721) ******************************************************************************** EST sequence 94 +strand 733 n (File: SGN-E540599+) 1 CAAGTATCAT TTGTGCTTAG ACTTGGTCAA ACAGGTCCCT TTGTTTCAAC ATATGGACAG 61 TTTGGTTCTA GAGAACATAT GTGATCGTGT CAAGTCATTG ATTTTCACTA AGGGGGAAAC 121 AGTATCTAGG TGTTTTTGCA TGCAACAACA TCAAAGAAAC AATCAATGCA ACTAAATATG 181 AGAAACATAG AATGGTGGAT GAGAAGAAGA AGGTTCCCTA GAGAGTTAAA GCAAAGAACT 241 AGAAATTTTC AAAGGCAAAA ATGGGCTGCA ATGCGTGGTG TTGATGAATG TGACATGATT 301 AGAAATATTC CTGAGGGTCT AAGGAGGGAC ATCAAGTATC ATTTGTGCTT AGACTTGGTC 361 AAACAGGTCC CTTTGTTTCA ACATATGGAC AGTTTGGTTC TAGAGAACAT ATGTGATCGT 421 GTCAAGTCAT TGATTTTCAC TAAGGGGGAA ACAGTATCTA GAGAGGGTGA TCCAGTACAA 481 AGAATGTTAT TTATTGTAAG AGGACACCTT CAAAGTAGCC AATATTTACG AGATGGTGTC 541 AAAAGTTATT GCATGTTAGG CCCTGGAAAT TTTAGTGGAG ATGAACTTTT GTCCTGGTGT 601 CTCCGGCGAC CTTTCGTCGA GCGGTTGCCA CCGTCCCTCT CCACGTTGGT GACCCTCGAG 661 ACCACCGAGG CCTTCGGCCT CGAGGCCGAA GACGTCAAGT ATGTGACACA ACATTTCGAT 721 ATACATTTGT GGA Predicted gene structure (within gDNA segment 39718 to 36090): Exon 1 37855 37619 ( 237 n); cDNA 130 366 ( 237 n); score: 1.000 Intron 1 37618 37345 ( 274 n); Pd: 0.981 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 37344 37258 ( 87 n); cDNA 367 453 ( 87 n); score: 1.000 Intron 2 37257 37124 ( 134 n); Pd: 0.978 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 37123 36858 ( 266 n); cDNA 454 718 ( 265 n); score: 0.989 Intron 3 36857 36108 ( 750 n); Pd: 0.999 (s: 0.98), Pa: 0.977 (s: 0) Exon 4 36107 36093 ( 15 n); cDNA 719 733 ( 15 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E540599+ 0.995 605 0.825 C PGS_C10SLe0045H11.1-_SGN-E540599+ (37855 37619,37344 37258,37123 36858,36107 36093) Alignment (genomic DNA sequence = upper lines): GTGTTTTTGC ATGCAACAAC ATCAAAGAAA CAATCAATGC AACTAAATAT GAGAAACATA 37796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTTTGC ATGCAACAAC ATCAAAGAAA CAATCAATGC AACTAAATAT GAGAAACATA 189 GAATGGTGGA TGAGAAGAAG AAGGTTCCCT AGAGAGTTAA AGCAAAGAAC TAGAAATTTT 37736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGGTGGA TGAGAAGAAG AAGGTTCCCT AGAGAGTTAA AGCAAAGAAC TAGAAATTTT 249 CAAAGGCAAA AATGGGCTGC AATGCGTGGT GTTGATGAAT GTGACATGAT TAGAAATATT 37676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGGCAAA AATGGGCTGC AATGCGTGGT GTTGATGAAT GTGACATGAT TAGAAATATT 309 CCTGAGGGTC TAAGGAGGGA CATCAAGTAT CATTTGTGCT TAGACTTGGT CAAACAGGTA 37616 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CCTGAGGGTC TAAGGAGGGA CATCAAGTAT CATTTGTGCT TAGACTTGGT CAAACAG... 366 ACGTAACGGA CTGATAACTA CTCCTTCATC ATTAATCCGA TATGAGAATA TGACTATCCA 37556 .......... .......... .......... .......... .......... .......... 366 ACTCATCTTG ATACACGAAA AAGATATATA TACATATATA TGTATGAGTC AATTTGACCT 37496 .......... .......... .......... .......... .......... .......... 366 ACGTATATAC TTCAGATGAC TCATGAATAT GTATACGCGG GTCAAACCTA AATATTATTG 37436 .......... .......... .......... .......... .......... .......... 366 AACGAATCAT ATTTTCATGG ATCATATAGT TGCATATTAG ATGATATTAT TGATATTATT 37376 .......... .......... .......... .......... .......... .......... 366 ATAATGATAT TTTACACTTT ATTATTTTTA GGTCCCTTTG TTTCAACATA TGGACAGTTT 37316 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTCCCTTTG TTTCAACATA TGGACAGTTT 395 GGTTCTAGAG AACATATGTG ATCGTGTCAA GTCATTGATT TTCACTAAGG GGGAAACAGT 37256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GGTTCTAGAG AACATATGTG ATCGTGTCAA GTCATTGATT TTCACTAAGG GGGAAACA.. 453 AAGTTTGAGT CATAGCAATG AATATCAAAT TTCTAATATC TAACTATTTT TTTTAGTTAA 37196 .......... .......... .......... .......... .......... .......... 453 TTTATCGCTC CAAATAAAAT TAATGATAAA TTTTACTGTT TAGCTAAAAA AAAATTTAAT 37136 .......... .......... .......... .......... .......... .......... 453 TTTTTTTTTT AGGTATCTAG AGAGGGTGAT CCAGTACAAA GAATGTTATT TATTGTAAGA 37076 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GTATCTAG AGAGGGTGAT CCAGTACAAA GAATGTTATT TATTGTAAGA 501 GGACACCTTC AAAGTAGCCA ATATTTACGA GATGGTGTCA AAAGTTATTG CATGTTAGGC 37016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACACCTTC AAAGTAGCCA ATATTTACGA GATGGTGTCA AAAGTTATTG CATGTTAGGC 561 CCTGGAAATT TTAGTGGAGA TGAACTTTTG TCCTGGTGTC TCCGGCGACC TTTCGTCGAG 36956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGGAAATT TTAGTGGAGA TGAACTTTTG TCCTGGTGTC TCCGGCGACC TTTCGTCGAG 621 CGGTTGCCAC CGTCCTCCTC CACGTTGGTG ACCCTCGAGA CCACCGAGGC CTTCGGCCTC 36896 |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTGCCAC CGTCCCTCTC CACGTTGGTG ACCCTCGAGA CCACCGAGGC CTTCGGCCTC 681 GAGGCCGAAG ACGTCAAGTA TGTGACACAA CATTTCAGGT ACATCATCGT ATTTCAGTTA 36836 |||||||||| |||||||||| |||||||||| |||||| | GAGGCCGAAG ACGTCAAGTA TGTGACACAA CATTTC-G.. .......... .......... 718 CGTGTTCAAC TGAATTCAAT ATATTATCTA TGTGTTTTAA GAAGTATACA TTTTATTTGT 36776 .......... .......... .......... .......... .......... .......... 718 GATGGAAGAA TATAAGCGTA ACAAATTTAT TTTGAAAAAA TTTACCCGCA CTAGGTATTT 36716 .......... .......... .......... .......... .......... .......... 718 TACATCAAGT CAATATAATT TTTATTATTA CGTGATTTAA TGAAGTAAAA CACATGTCAA 36656 .......... .......... .......... .......... .......... .......... 718 TTAATTATGA TTAAGTAAAA TTAACTATAA ATTTAAACAC GTGCCATGCA TGTATTGACT 36596 .......... .......... .......... .......... .......... .......... 718 TGATGTAAAC ACCCGATGCG GATAAATTTT ACCCGTTATA AACTCATCTT AAATCTATTG 36536 .......... .......... .......... .......... .......... .......... 718 CATTTTTCTT GTAATGGATC GGTCATAATT TTGCTTTTTT TTTTCTTGTT ATGCATGTGA 36476 .......... .......... .......... .......... .......... .......... 718 AAAATGATGC TTATAAAATA AATTCAGTAT TTTCTACGCA AAACATAAAA TATATAATTT 36416 .......... .......... .......... .......... .......... .......... 718 TTTCACCTAT AGATATAGGT AAAAATCACA AAACTTTATC ATTTTTCCCT TTTTATATGA 36356 .......... .......... .......... .......... .......... .......... 718 AATATTACTA AATATTTTGA GTTATTAACT ACGTTGACTT ATATAGTTTT AAATATATAA 36296 .......... .......... .......... .......... .......... .......... 718 CTTATGTTCA ACTATACACT TAGAATATGT AGTTCGTTAT TTATTGATGG ATTTTTCAAA 36236 .......... .......... .......... .......... .......... .......... 718 ATTTTTATCA TTTTTCCCTT CACATAAACT TGTATTAGAT TCTGAATTCA TAATTTCAAA 36176 .......... .......... .......... .......... .......... .......... 718 AGTAAATATA TATTAATTAT ATTTGACGTC AAAAATTTTA TCGAGTTTAA ATTTTGAATC 36116 .......... .......... .......... .......... .......... .......... 718 CGTCTCAGAT ATACATTTGT GGA 36093 || |||||||||| ||| ........AT ATACATTTGT GGA 733 hqPGS_C10SLe0045H11.1-_SGN-E540599+ (37855 37619,37344 37258,37123 36858) ******************************************************************************** EST sequence 104 +strand 455 n (File: SGN-E289570+) 1 AAGTATCATT TGTGCTTAGA CTTGGTCAAA CAGGTCCCTT TGTTTCAACA TATGGACAGT 61 TTGGTTCTAG AGAACATATG TGATCGTGTC AAGTCATTGA TTTTCACTAA GGGGGAAACA 121 GTATCTAGGT GTTTTTGCAT GCAACAACAT CAAAGAAACA ATCAATGCAA CTAAATATGA 181 GAAACATAGA ATGGTGGATG AGAAGAAGAA GGTTCCCTAG AGAGTTAAAG CAAAGAACTA 241 GAAATTTTCA AAGGCAAAAA TGGGCTGCAA TGCGTGGTGT TGATGAATGT GACATGATTA 301 GAAATATTCC TGAGGGTCTA AGGAGGGACA TCAAGTATCA TTTGTGCTTA GACTTGGTCA 361 AACAGGTCCC TTTGTTTCAA CATATGGACA GTTTGGTTCT AGAGAACATA TGTGATCGTG 421 TCAAGTCATT GATTTTCACT AAAGGGGAAA CAGTA Predicted gene structure (within gDNA segment 39708 to 36528): Exon 1 37855 37619 ( 237 n); cDNA 129 365 ( 237 n); score: 1.000 Intron 1 37618 37345 ( 274 n); Pd: 0.981 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 2 37344 37258 ( 87 n); cDNA 366 452 ( 87 n); score: 0.989 MATCH C10SLe0045H11.1- SGN-E289570+ 0.997 324 0.712 C PGS_C10SLe0045H11.1-_SGN-E289570+ (37855 37619,37344 37258) Alignment (genomic DNA sequence = upper lines): GTGTTTTTGC ATGCAACAAC ATCAAAGAAA CAATCAATGC AACTAAATAT GAGAAACATA 37796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTTTGC ATGCAACAAC ATCAAAGAAA CAATCAATGC AACTAAATAT GAGAAACATA 188 GAATGGTGGA TGAGAAGAAG AAGGTTCCCT AGAGAGTTAA AGCAAAGAAC TAGAAATTTT 37736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGGTGGA TGAGAAGAAG AAGGTTCCCT AGAGAGTTAA AGCAAAGAAC TAGAAATTTT 248 CAAAGGCAAA AATGGGCTGC AATGCGTGGT GTTGATGAAT GTGACATGAT TAGAAATATT 37676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGGCAAA AATGGGCTGC AATGCGTGGT GTTGATGAAT GTGACATGAT TAGAAATATT 308 CCTGAGGGTC TAAGGAGGGA CATCAAGTAT CATTTGTGCT TAGACTTGGT CAAACAGGTA 37616 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CCTGAGGGTC TAAGGAGGGA CATCAAGTAT CATTTGTGCT TAGACTTGGT CAAACAG... 365 ACGTAACGGA CTGATAACTA CTCCTTCATC ATTAATCCGA TATGAGAATA TGACTATCCA 37556 .......... .......... .......... .......... .......... .......... 365 ACTCATCTTG ATACACGAAA AAGATATATA TACATATATA TGTATGAGTC AATTTGACCT 37496 .......... .......... .......... .......... .......... .......... 365 ACGTATATAC TTCAGATGAC TCATGAATAT GTATACGCGG GTCAAACCTA AATATTATTG 37436 .......... .......... .......... .......... .......... .......... 365 AACGAATCAT ATTTTCATGG ATCATATAGT TGCATATTAG ATGATATTAT TGATATTATT 37376 .......... .......... .......... .......... .......... .......... 365 ATAATGATAT TTTACACTTT ATTATTTTTA GGTCCCTTTG TTTCAACATA TGGACAGTTT 37316 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTCCCTTTG TTTCAACATA TGGACAGTTT 394 GGTTCTAGAG AACATATGTG ATCGTGTCAA GTCATTGATT TTCACTAAGG GGGAAACA 37258 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||| GGTTCTAGAG AACATATGTG ATCGTGTCAA GTCATTGATT TTCACTAAAG GGGAAACA 452 hqPGS_C10SLe0045H11.1-_SGN-E289570+ (37855 37619,37344 37258) ******************************************************************************** EST sequence 149 +strand 575 n (File: SGN-E301194+) 1 CCTTTTAGGG CGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 61 CTGTTTTTGC CTCTCCATAA TAAAATTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTA 121 TTGGTGAACC ACGTAAATCT GTTGTCTTGT TTTTCGCGTT TATATATTTT CTCGTATTAT 181 CTCAAATTTC GCACAACACT CTTAATATTC ATAACTATCA TCTTTTCATA TTCATAACCT 241 CCAAATATTT AAATTAAACT TTAAGAAATC TTTTGGTATT CCTTCTATTC TATTTGTATA 301 AATTCAACTT CTTTATCTCA TGAAACCCCT ATCAAGATTA TTATTTTTAT TCTATAGTAA 361 AAATAGATGC TGAAAACTCT TGAATTTTGA TAGGATATGA AAGGAGTCGA TAAAAACTCA 421 GAGAGTTATG TACTAATTTT TACTTATTTT TTCATCTATA TATACATCAA TCTTATAAGA 481 ATAATGTCTA TATTGTATTT TTTTCTTAAA TATTCTGTTT CTTTTAGTCT TTTTTTTCAC 541 TCTGTTAGAC TTCTTAATTT AGTTTTCTAT GAATG Predicted gene structure (within gDNA segment 48559 to 42215): Exon 1 47429 47284 ( 146 n); cDNA 54 199 ( 146 n); score: 0.979 Intron 1 47283 46935 ( 349 n); Pd: 0.000 (s: 0.96), Pa: 0.576 (s: 0) Exon 2 46934 46905 ( 30 n); cDNA 200 229 ( 30 n); score: 0.633 Intron 2 46904 45616 (1289 n); Pd: 0.000 (s: 0), Pa: 1.000 (s: 0) Exon 3 45615 45610 ( 6 n); cDNA 230 235 ( 6 n); score: 0.833 Intron 3 45609 44723 ( 887 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 44722 44709 ( 14 n); cDNA 236 249 ( 14 n); score: 0.786 Intron 4 44708 43412 (1297 n); Pd: 0.650 (s: 0), Pa: 0.000 (s: 0.68) Exon 5 43411 43368 ( 44 n); cDNA 250 293 ( 44 n); score: 0.682 Intron 5 43367 42850 ( 518 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0) Exon 6 42849 42828 ( 22 n); cDNA 294 314 ( 21 n); score: 0.727 MATCH C10SLe0045H11.1- SGN-E301194+ 0.979 262 0.456 C PGS_C10SLe0045H11.1-_SGN-E301194+ (47429 47284,46934 46905,45615 45610,44722 44709,43411 43368,42849 42828) Alignment (genomic DNA sequence = upper lines): TGTAATTCTG TTTTTGCCTC TCCATAATAA AACTGCTCCC TCTCTTCCCG TGGACGTAGC 47370 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| TGTAATTCTG TTTTTGCCTC TCCATAATAA AATTGCTCCC TCTCTTCCCG TGGACGTAGC 113 CAATTTATTG GTGAACCACG TAAATCTGTT GTCTTGTTTT TCGCGTTTAT ATATTTTCTC 47310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTTATTG GTGAACCACG TAAATCTGTT GTCTTGTTTT TCGCGTTTAT ATATTTTCTC 173 GTATTATCTC AAATTCCGCA CAACATAAGA TTTATATAGT TAGAGTTAAA CCAGTTTGGG 47250 |||||||||| ||||| |||| ||||| GTATTATCTC AAATTTCGCA CAACAC.... .......... .......... .......... 199 ATTGATGTGT AGTTGTTTGA TTGATTTGTT ATTTTGCCAT AATTTCTCTT TTTCTGTCAC 47190 .......... .......... .......... .......... .......... .......... 199 CTTGTAAGTG TAGCTTAATG TGGCCATACT CCATAGCAAT TGAAACTGTT ACAATGGTTT 47130 .......... .......... .......... .......... .......... .......... 199 GTAAGGGCCT TTGGCATTTT AGTTATGTGG TTACGGTTGT GATGGTTTCC TGATGCTGAT 47070 .......... .......... .......... .......... .......... .......... 199 ATCCGCAGGA TCAAATTGAG GCCCCTGTGT GGGTGGATCT TACCTTGGAA TGTAAGTCCG 47010 .......... .......... .......... .......... .......... .......... 199 CCTATAAAGA CATGTGAGTG GCTGTATGGG TTTGTTTGTG TTTCTCAACT TTATGCTGGT 46950 .......... .......... .......... .......... .......... .......... 199 TTCTTGGGGA ATTAGTTTTT CAATCCAGCA TTTTCATCTT TTTGTTGCAG GGACGAGGAA 46890 | || || || | | ||||||| || | .......... .....TCTTA ATATTCATAA CTATCATCTT TTCAT..... .......... 229 TGGTTCCACA TAAGCCATCC GTAAGCAACT TCTGTTTTTG CGAACTTGTG CAGTTTCACT 46830 .......... .......... .......... .......... .......... .......... 229 ATAGTATTGT GGTATCTCTA AGTTGAATGA GCTTTCAGGT TTCACCAGGC TTCTTCTCGA 46770 .......... .......... .......... .......... .......... .......... 229 GAGTTGAAGT CAGCATTTTC TCACTCTGGA GAAAGTTCCA TAAACCTGGA GCATGGCATT 46710 .......... .......... .......... .......... .......... .......... 229 CAGGGATCAT CTTCTCCTAA GCTCCCACCT TCAGTTTCAA GATCAAGAGG CAAAGATTTC 46650 .......... .......... .......... .......... .......... .......... 229 CGAAGCAGAC AGTGGAGTCA AGGAGATCAG ACTCTTACTT TGGATAAGAA ACATCATGTA 46590 .......... .......... .......... .......... .......... .......... 229 AAGCACTTAA GTAAAGGGGG TTTAGAAGCT GATAAAGTAG TTGAGCATAA GACAAATAAA 46530 .......... .......... .......... .......... .......... .......... 229 AAAAAATTAA CAAGCTCTGC AGCTTTAGAC TCAGATTCTG CTTGTCAAGC TCTGTATTCC 46470 .......... .......... .......... .......... .......... .......... 229 AGGGATAAAA AGATTAGCTC GAATTCTTTG GCTGCCTATA GTGACAAAAC CCGCTCAATA 46410 .......... .......... .......... .......... .......... .......... 229 AGCAGCAGCA TTACATCAGA GCATGGTGAA GAGTGTTACA AGCAAGAGTT ATGTGTTAGC 46350 .......... .......... .......... .......... .......... .......... 229 GATTCCTCAA GCACCATTAC ATCTGAAGCT TGTGGACAGA AGTCCTTTGA AGTGTCTGGT 46290 .......... .......... .......... .......... .......... .......... 229 CCAATACTTG GTCAAACTAC TGGGCTATTG TCATCTCTAA GAGTAAGTCT GAGGAAAAGT 46230 .......... .......... .......... .......... .......... .......... 229 TGTGTTACAA GACAAGCATC AAGGATGGAG GTAAATGTTT GCAGGCAACC AGAAGGTCGG 46170 .......... .......... .......... .......... .......... .......... 229 AAATCTTCCT CAAGTAAATC GAGTGTAGGA TCTTCTTCAA TTCCCTACAA AGAAAGGGAA 46110 .......... .......... .......... .......... .......... .......... 229 GGCGAAACTG AGAGAGAAAG TAAAGAGAAA ACTCCAGAAA GCAGAAATGT AACTACAATT 46050 .......... .......... .......... .......... .......... .......... 229 GTAGAAGCGA AACAGGCTAA TAAGTCCAAG GTTCCTGTTC AAGCTCATAA CAGAACTTCT 45990 .......... .......... .......... .......... .......... .......... 229 ATCCCTAAAA TGGTTACTGG AAGAACTGTT TCTTCGTCTG TTTCCAGTGA AACTAGTAGG 45930 .......... .......... .......... .......... .......... .......... 229 CCAAAGGTGA GAAACCAGAA AAGTCGTTCA AAAGCTTTAT ATGGAAAACT TCCTCCTCTT 45870 .......... .......... .......... .......... .......... .......... 229 TCTTTTTTCA TCATTCCACA ACTTTTATAT TTAGAAGATT ATGTTTTGGC CAGGAAAACT 45810 .......... .......... .......... .......... .......... .......... 229 TTTACCTTCT ATTTTACTGC CAAGTTTGGG GATTGACAGG GGTTTATTTC TAAGTGTTAA 45750 .......... .......... .......... .......... .......... .......... 229 GCATTGTAGC TGGACAAGCA TTTTTATAAA TTGACTTCCT TCTTCTTGGT GGGAGGGGTG 45690 .......... .......... .......... .......... .......... .......... 229 CATTACTAGC GTTTCTTGCT GCATTTAACC ATTGATAAAC TGATTTGTTT ATTTAATTGT 45630 .......... .......... .......... .......... .......... .......... 229 GTGTGTTGTT ATAGGTTCAT CCGACTAATG TACAAAGAAA AGCATTGGTT CCTCAAAGAG 45570 ||||| .......... ....ATTCAT .......... .......... .......... .......... 235 CCAATGGACG TGTGGCCTCA ATTTTGGTCT CAAAGCCTAG TGAAAGAATT GGAAGTAGCC 45510 .......... .......... .......... .......... .......... .......... 235 ATTGTAGAAG GGTTGTGAGC AGTGGTAAGG AGAATGATGT TGTCAGAAAG GGTATAAGCC 45450 .......... .......... .......... .......... .......... .......... 235 AGAAGTCAGT TGTCAAAGAC AACCAGGGGT GTAGTACAAA ATTCTCAAGT TCCAAAAATG 45390 .......... .......... .......... .......... .......... .......... 235 AGAATAAAAG AAGCTGCCAG AGCACAAAGT CGAGTGGTTT TATGGTAACG TTTTTACTCA 45330 .......... .......... .......... .......... .......... .......... 235 TAGCCGCTTA TTGTTGCTCA ATATTTCTAC TTTTTGACTG GTATAAAAGA TAAAGAACAT 45270 .......... .......... .......... .......... .......... .......... 235 TATCAATAGT TTGAACTGTA AATCCAAATT ATTGTGGTGG AGCTTAGTCT GAAGATATAT 45210 .......... .......... .......... .......... .......... .......... 235 TGCAGAACTT AGCGATTGTA TTCATCATAG TTTAGTAGCT TCTGGCTTTA TTTCGTGTTA 45150 .......... .......... .......... .......... .......... .......... 235 AGAGTGCAAG AGTCATAAAC ATGCCATAGA CATTTCTAAA TTCTATGACT ATAAAATCAA 45090 .......... .......... .......... .......... .......... .......... 235 TGATATTAAG GATAAAACGA GACATTTAAA CATAATCTAA ATATAGAAAG GTGATCCGTT 45030 .......... .......... .......... .......... .......... .......... 235 TTGGGAGACT ATAAAGGGAA GTGTTTCACA TAAAATGAGA CACGAGGGAG TATCACTTAT 44970 .......... .......... .......... .......... .......... .......... 235 TAGGGGCTTT TGACTAGAAA GCCTGAAATG TAGTCTAAGA AAATGTTAGA TTTGGTACTG 44910 .......... .......... .......... .......... .......... .......... 235 GTTTCAATCT CAGCGTTCAA TTAAGTCTCT GGGGGGATGA CTCACGTAAG AAATCCATTC 44850 .......... .......... .......... .......... .......... .......... 235 AATGTCATCG TCAGTCATTC TGTTGCTACG TCTTTTGATC ATCAAAGTTC TTTTAGCCTC 44790 .......... .......... .......... .......... .......... .......... 235 TTTTCCTTCT CATGTTTTGC TACTATGTTG TTCGGACTCT TCAAAAATGT TGCTGCGCCC 44730 .......... .......... .......... .......... .......... .......... 235 ATGTCAGATC CTCCAAAAAA TGTACTAATT TTTGAGGATC CAATGTGCAC TCGGTGCCTT 44670 | | ||||||| | | .......AAC CTCCAAATAT T......... .......... .......... .......... 249 CTTTGAAGAG TTCGAGCAAC ATAATTTTGC TATGGTACAT CCTTTTCATT ATTCACTATG 44610 .......... .......... .......... .......... .......... .......... 249 TTTTTCCTCC GAACTTTATA ATCATCAGCG CCACTAGACA TGCCAATATA TTCTTGATAT 44550 .......... .......... .......... .......... .......... .......... 249 ATTTCATCCC CTTATCAATC ATTCTCACTA ACTTTTTACC ATTATTGTGA TCTGAAATAT 44490 .......... .......... .......... .......... .......... .......... 249 TTTCAATGCA GGTGAATCTA CATAATAGAA AGGAAGTCCC GGATCGTGCA AATGTAAAGA 44430 .......... .......... .......... .......... .......... .......... 249 AGAAGGCTTT CTACTGATAA AAGATTGAAC CTGTATGTAA ATAGTACACA CTCTACCTCT 44370 .......... .......... .......... .......... .......... .......... 249 TGCATTCTCT GCTAAGTGTG CAATGAAAAT GGGTAAATGA CATGTATCAA ATTGATTTTG 44310 .......... .......... .......... .......... .......... .......... 249 TGATGTTCAT CTTTTTGCTA TGCTGCAATG TTACTATCTG GTATGTAGCA TGTTGAGTGA 44250 .......... .......... .......... .......... .......... .......... 249 CAATTTTTGT TGCATCTTAA TTTTTCTATT CAGTGGTTGA TCAAAAGCAT ACAATATGTG 44190 .......... .......... .......... .......... .......... .......... 249 TTCCTTTTCT AATCTATATG GTTTGTGTGT TCAATATGGA CAAGGGTTGA GAGAGGGGCG 44130 .......... .......... .......... .......... .......... .......... 249 AGTCGATTAT CCTCTTTAAT TTTAGGCCAA ATACATAAAC AGATTTCTAA ATTTGTTGGT 44070 .......... .......... .......... .......... .......... .......... 249 TTTTTCCCTC AGGTACCTCA ACTATGCTAT TTTCCTATTG AATCATTGAA CCACCCATAA 44010 .......... .......... .......... .......... .......... .......... 249 TTTGCTTCTT TTAAACACCG CTGATTGATG TGAAACTAGA TTTTGTGAGG GTATTGATAG 43950 .......... .......... .......... .......... .......... .......... 249 AGAGGATACA TATGATGTTC CAGAACTCAT TAGTTCAACT GATAATGAAA ATATTCGAGA 43890 .......... .......... .......... .......... .......... .......... 249 ATAATTGTGT TTTACTTAAG GTCATTTGAA GCCATTAGAA AACAAATAAG ACTAACACGT 43830 .......... .......... .......... .......... .......... .......... 249 AGTTTGTCTT CATTCCTTCA ATCAAAATCA TGTACAATAC GAACACAATT GAGGGTATTT 43770 .......... .......... .......... .......... .......... .......... 249 ACAATAGAAA AGTCTATCAA AATCAGCCAA CAGTGTTTAA AAGGAACAAA TTATGGGTGG 43710 .......... .......... .......... .......... .......... .......... 249 TTCAATGATT TAATAGGAAA ATGACGTAGT TGAGGTACCT GAGGGGAAAA ATCCAACAAC 43650 .......... .......... .......... .......... .......... .......... 249 TTTAGGGATC TGTTTATGAG TTTGGCCTTA ATTTTAACTT TTCACATAAT GTTTGTTAGA 43590 .......... .......... .......... .......... .......... .......... 249 CCATAAGATT AAATGATGCT TTGATACATT TTACATATTT TTAGTTTAAG AGTACAGGTT 43530 .......... .......... .......... .......... .......... .......... 249 TTTAAATGTC ATTTTTACTT TATTTAACTC TATATTAAGT TAAATCAAAC AAATAAACTA 43470 .......... .......... .......... .......... .......... .......... 249 AAACAAATAG ATTACTTATT TGTTGCCCTC ACTTTGTACC AAATGAAGAT CAGACAAATA 43410 || .......... .......... .......... .......... .......... ........TA 251 AATTAAAATG GAGGAATTGC TTATTTATTA CTCCTTTTCT TTCAAAAATA GGTGTTACTT 43350 ||||||| | | ||| | || |||| || || |||| | AATTAAACTT TAAGAAATCT TTTGGTATTC CTTCTATTCT AT........ .......... 293 AAGTAAAAAT AAAGCTTCTC AAAATAAGCG TCACTTTAAA AGTTCCCGAT AAAAAAAATT 43290 .......... .......... .......... .......... .......... .......... 293 CGTACTACTA TATTCTTCCA ACTATACCTT TGGATTGAAT ACTTCCTTTT TTCTTAATAA 43230 .......... .......... .......... .......... .......... .......... 293 TTCTTAATTT TCAAGAAAAA TCTAATAAAT AGGGCGATTT TTTTTTTTAG CGTGAAATAA 43170 .......... .......... .......... .......... .......... .......... 293 GAAACTTTTT TTCTGAAAAT ATTAGGACTA ACCTAACATG AGAAAATTGA ACCAAATACA 43110 .......... .......... .......... .......... .......... .......... 293 CTCTATACCA TGTTATAGTT ATAGTTCATG TTACTTTGAA TTACACACTC TTAGCGTATA 43050 .......... .......... .......... .......... .......... .......... 293 TAAGTTAAAA CTCACTCGAA AATCTTTAGG TGATCTCTTC AAGTACCTAA CGACTCTATA 42990 .......... .......... .......... .......... .......... .......... 293 AATAATTGTT ATTTTTGTGA AGTGATATTT GATTTTAATA GTAATGTCTG TACTTGTAGT 42930 .......... .......... .......... .......... .......... .......... 293 AACGTTGGAT AGTGTTTTTT TCTTCTTCTT CATATTAATT GATTTTGCAA ACAAACAAAA 42870 .......... .......... .......... .......... .......... .......... 293 ATAAGGAAAT TTCTTCGAAA TTGTGTTTTT TCAAACTTAT TT 42828 |||| | | || ||||| | || .......... .......... TTGTATAAAT TC-AACTTCT TT 314 hqPGS_C10SLe0045H11.1-_SGN-E301194+ (47429 47284,46934 46905,45615 45610,44722 44709,43411 43368,42849 42828) ******************************************************************************** EST sequence 148 +strand 641 n (File: SGN-E301078+) 1 CCTTTTAGGG TGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 61 CTGTTTTTGC CTCTCCATAA TAAAATTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTA 121 TTGGTGAACC ACGTAAAACT GGTGTCTTGG TTTTCGCGTT TATATATTTT CTCGTATTAT 181 CTCAAATTTC GCACAACACT CTTAATATTC ATAACTATCA TCTTTTCATA TTCATAACCT 241 CCAAATATTT AAATTAAACT TTAAGATATC TTTTGGTATT CCTTCTATTC TATTTGTATA 301 AATTCAACTT CTTTATCTCA TGAAACCCCT ATCAAGATTA TTATTTTTAT TCTATAGTAA 361 AAATAGATGC TGAAAACTCT TGAATTTTGA TAGGATATGA AAGGAGTCGA TAAAAACTCA 421 GAGAGTTATG TACTAATTTT TACTTATTTT TTCATCTATA TATACATCAA TCTTATAAGA 481 ATAATGTCTA TATTGTATTT TTTTCTTAAA TATTCTGTTT CTTTTAGTCT TTTTTTTCAC 541 TCTGTTAGAC TTCTTAATTT AGTTTTCTAT GAATGATTTA TTGTCGTATG TCTTTGAATT 601 TTGTAATTGT TACATTTTAT TATTCATTAC AATTTACATA T Predicted gene structure (within gDNA segment 48559 to 42155): Exon 1 47429 47284 ( 146 n); cDNA 54 199 ( 146 n); score: 0.959 Intron 1 47283 46935 ( 349 n); Pd: 0.000 (s: 0.94), Pa: 0.576 (s: 0) Exon 2 46934 46905 ( 30 n); cDNA 200 229 ( 30 n); score: 0.633 Intron 2 46904 45616 (1289 n); Pd: 0.000 (s: 0), Pa: 1.000 (s: 0) Exon 3 45615 45610 ( 6 n); cDNA 230 235 ( 6 n); score: 0.833 Intron 3 45609 44723 ( 887 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 44722 44713 ( 10 n); cDNA 236 245 ( 10 n); score: 0.900 MATCH C10SLe0045H11.1- SGN-E301078+ 0.959 192 0.300 C PGS_C10SLe0045H11.1-_SGN-E301078+ (47429 47284,46934 46905,45615 45610,44722 44713) Alignment (genomic DNA sequence = upper lines): TGTAATTCTG TTTTTGCCTC TCCATAATAA AACTGCTCCC TCTCTTCCCG TGGACGTAGC 47370 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| TGTAATTCTG TTTTTGCCTC TCCATAATAA AATTGCTCCC TCTCTTCCCG TGGACGTAGC 113 CAATTTATTG GTGAACCACG TAAATCTGTT GTCTTGTTTT TCGCGTTTAT ATATTTTCTC 47310 |||||||||| |||||||||| |||| ||| | |||||| ||| |||||||||| |||||||||| CAATTTATTG GTGAACCACG TAAAACTGGT GTCTTGGTTT TCGCGTTTAT ATATTTTCTC 173 GTATTATCTC AAATTCCGCA CAACATAAGA TTTATATAGT TAGAGTTAAA CCAGTTTGGG 47250 |||||||||| ||||| |||| ||||| GTATTATCTC AAATTTCGCA CAACAC.... .......... .......... .......... 199 ATTGATGTGT AGTTGTTTGA TTGATTTGTT ATTTTGCCAT AATTTCTCTT TTTCTGTCAC 47190 .......... .......... .......... .......... .......... .......... 199 CTTGTAAGTG TAGCTTAATG TGGCCATACT CCATAGCAAT TGAAACTGTT ACAATGGTTT 47130 .......... .......... .......... .......... .......... .......... 199 GTAAGGGCCT TTGGCATTTT AGTTATGTGG TTACGGTTGT GATGGTTTCC TGATGCTGAT 47070 .......... .......... .......... .......... .......... .......... 199 ATCCGCAGGA TCAAATTGAG GCCCCTGTGT GGGTGGATCT TACCTTGGAA TGTAAGTCCG 47010 .......... .......... .......... .......... .......... .......... 199 CCTATAAAGA CATGTGAGTG GCTGTATGGG TTTGTTTGTG TTTCTCAACT TTATGCTGGT 46950 .......... .......... .......... .......... .......... .......... 199 TTCTTGGGGA ATTAGTTTTT CAATCCAGCA TTTTCATCTT TTTGTTGCAG GGACGAGGAA 46890 | || || || | | ||||||| || | .......... .....TCTTA ATATTCATAA CTATCATCTT TTCAT..... .......... 229 TGGTTCCACA TAAGCCATCC GTAAGCAACT TCTGTTTTTG CGAACTTGTG CAGTTTCACT 46830 .......... .......... .......... .......... .......... .......... 229 ATAGTATTGT GGTATCTCTA AGTTGAATGA GCTTTCAGGT TTCACCAGGC TTCTTCTCGA 46770 .......... .......... .......... .......... .......... .......... 229 GAGTTGAAGT CAGCATTTTC TCACTCTGGA GAAAGTTCCA TAAACCTGGA GCATGGCATT 46710 .......... .......... .......... .......... .......... .......... 229 CAGGGATCAT CTTCTCCTAA GCTCCCACCT TCAGTTTCAA GATCAAGAGG CAAAGATTTC 46650 .......... .......... .......... .......... .......... .......... 229 CGAAGCAGAC AGTGGAGTCA AGGAGATCAG ACTCTTACTT TGGATAAGAA ACATCATGTA 46590 .......... .......... .......... .......... .......... .......... 229 AAGCACTTAA GTAAAGGGGG TTTAGAAGCT GATAAAGTAG TTGAGCATAA GACAAATAAA 46530 .......... .......... .......... .......... .......... .......... 229 AAAAAATTAA CAAGCTCTGC AGCTTTAGAC TCAGATTCTG CTTGTCAAGC TCTGTATTCC 46470 .......... .......... .......... .......... .......... .......... 229 AGGGATAAAA AGATTAGCTC GAATTCTTTG GCTGCCTATA GTGACAAAAC CCGCTCAATA 46410 .......... .......... .......... .......... .......... .......... 229 AGCAGCAGCA TTACATCAGA GCATGGTGAA GAGTGTTACA AGCAAGAGTT ATGTGTTAGC 46350 .......... .......... .......... .......... .......... .......... 229 GATTCCTCAA GCACCATTAC ATCTGAAGCT TGTGGACAGA AGTCCTTTGA AGTGTCTGGT 46290 .......... .......... .......... .......... .......... .......... 229 CCAATACTTG GTCAAACTAC TGGGCTATTG TCATCTCTAA GAGTAAGTCT GAGGAAAAGT 46230 .......... .......... .......... .......... .......... .......... 229 TGTGTTACAA GACAAGCATC AAGGATGGAG GTAAATGTTT GCAGGCAACC AGAAGGTCGG 46170 .......... .......... .......... .......... .......... .......... 229 AAATCTTCCT CAAGTAAATC GAGTGTAGGA TCTTCTTCAA TTCCCTACAA AGAAAGGGAA 46110 .......... .......... .......... .......... .......... .......... 229 GGCGAAACTG AGAGAGAAAG TAAAGAGAAA ACTCCAGAAA GCAGAAATGT AACTACAATT 46050 .......... .......... .......... .......... .......... .......... 229 GTAGAAGCGA AACAGGCTAA TAAGTCCAAG GTTCCTGTTC AAGCTCATAA CAGAACTTCT 45990 .......... .......... .......... .......... .......... .......... 229 ATCCCTAAAA TGGTTACTGG AAGAACTGTT TCTTCGTCTG TTTCCAGTGA AACTAGTAGG 45930 .......... .......... .......... .......... .......... .......... 229 CCAAAGGTGA GAAACCAGAA AAGTCGTTCA AAAGCTTTAT ATGGAAAACT TCCTCCTCTT 45870 .......... .......... .......... .......... .......... .......... 229 TCTTTTTTCA TCATTCCACA ACTTTTATAT TTAGAAGATT ATGTTTTGGC CAGGAAAACT 45810 .......... .......... .......... .......... .......... .......... 229 TTTACCTTCT ATTTTACTGC CAAGTTTGGG GATTGACAGG GGTTTATTTC TAAGTGTTAA 45750 .......... .......... .......... .......... .......... .......... 229 GCATTGTAGC TGGACAAGCA TTTTTATAAA TTGACTTCCT TCTTCTTGGT GGGAGGGGTG 45690 .......... .......... .......... .......... .......... .......... 229 CATTACTAGC GTTTCTTGCT GCATTTAACC ATTGATAAAC TGATTTGTTT ATTTAATTGT 45630 .......... .......... .......... .......... .......... .......... 229 GTGTGTTGTT ATAGGTTCAT CCGACTAATG TACAAAGAAA AGCATTGGTT CCTCAAAGAG 45570 ||||| .......... ....ATTCAT .......... .......... .......... .......... 235 CCAATGGACG TGTGGCCTCA ATTTTGGTCT CAAAGCCTAG TGAAAGAATT GGAAGTAGCC 45510 .......... .......... .......... .......... .......... .......... 235 ATTGTAGAAG GGTTGTGAGC AGTGGTAAGG AGAATGATGT TGTCAGAAAG GGTATAAGCC 45450 .......... .......... .......... .......... .......... .......... 235 AGAAGTCAGT TGTCAAAGAC AACCAGGGGT GTAGTACAAA ATTCTCAAGT TCCAAAAATG 45390 .......... .......... .......... .......... .......... .......... 235 AGAATAAAAG AAGCTGCCAG AGCACAAAGT CGAGTGGTTT TATGGTAACG TTTTTACTCA 45330 .......... .......... .......... .......... .......... .......... 235 TAGCCGCTTA TTGTTGCTCA ATATTTCTAC TTTTTGACTG GTATAAAAGA TAAAGAACAT 45270 .......... .......... .......... .......... .......... .......... 235 TATCAATAGT TTGAACTGTA AATCCAAATT ATTGTGGTGG AGCTTAGTCT GAAGATATAT 45210 .......... .......... .......... .......... .......... .......... 235 TGCAGAACTT AGCGATTGTA TTCATCATAG TTTAGTAGCT TCTGGCTTTA TTTCGTGTTA 45150 .......... .......... .......... .......... .......... .......... 235 AGAGTGCAAG AGTCATAAAC ATGCCATAGA CATTTCTAAA TTCTATGACT ATAAAATCAA 45090 .......... .......... .......... .......... .......... .......... 235 TGATATTAAG GATAAAACGA GACATTTAAA CATAATCTAA ATATAGAAAG GTGATCCGTT 45030 .......... .......... .......... .......... .......... .......... 235 TTGGGAGACT ATAAAGGGAA GTGTTTCACA TAAAATGAGA CACGAGGGAG TATCACTTAT 44970 .......... .......... .......... .......... .......... .......... 235 TAGGGGCTTT TGACTAGAAA GCCTGAAATG TAGTCTAAGA AAATGTTAGA TTTGGTACTG 44910 .......... .......... .......... .......... .......... .......... 235 GTTTCAATCT CAGCGTTCAA TTAAGTCTCT GGGGGGATGA CTCACGTAAG AAATCCATTC 44850 .......... .......... .......... .......... .......... .......... 235 AATGTCATCG TCAGTCATTC TGTTGCTACG TCTTTTGATC ATCAAAGTTC TTTTAGCCTC 44790 .......... .......... .......... .......... .......... .......... 235 TTTTCCTTCT CATGTTTTGC TACTATGTTG TTCGGACTCT TCAAAAATGT TGCTGCGCCC 44730 .......... .......... .......... .......... .......... .......... 235 ATGTCAGATC CTCCAAA 44713 | | ||||||| .......AAC CTCCAAA 245 hqPGS_C10SLe0045H11.1-_SGN-E301078+ (47429 47284) ******************************************************************************** EST sequence 138 +strand 469 n (File: SGN-E208654+) 1 ACATCAAGAA TTCTGTATAA GGTATGGTGT CCTCCTTCCA GAAGACCATG AACGCAAAGA 61 TCCCTTAAGC ATGTCTGTTA CCATTCTGCG GCAATATGAC ATCCTTCCTG AGATGTACCA 121 AGTTGGGTTT ACAAAGTTAT ATTTTCGGGC AGGACAGATT GCTGTGCTGG AGGATGTGAG 181 GAAACAAGTT CTGCAAGGCA CTCTTGAGGT GCAAAAGTGC TACAGTGGTC CTCATGCTCG 241 TCGTGACTTC CATGAGCTCA AAGGAGTAGT GATCGTACTT CAATCATTTG TTCGTGGTGA 301 AATTGCTCGA ATGCAGTATA AGGATTTTCT GGAGTCTAAA CAGAAAAACG CTAATAAAGA 361 AAATGATGAG CAGCTGGTGG CTGCTCTGCA GATACAATCA GCTATTCGTT GCTGGTTGGC 421 TCATAGGCAA CTTAATCAAC TGCAGAAGTC AAAAAAGTTA AATCAAGAC Predicted gene structure (within gDNA segment 54994 to 52042): Exon 1 54301 54281 ( 21 n); cDNA 1 21 ( 21 n); score: 1.000 Intron 1 54280 54203 ( 78 n); Pd: 0.397 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 54202 54067 ( 136 n); cDNA 22 157 ( 136 n); score: 1.000 Intron 2 54066 53402 ( 665 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 53401 53272 ( 130 n); cDNA 158 287 ( 130 n); score: 1.000 Intron 3 53271 52912 ( 360 n); Pd: 0.578 (s: 1.00), Pa: 0.921 (s: 1.00) Exon 4 52911 52798 ( 114 n); cDNA 288 401 ( 114 n); score: 1.000 Intron 4 52797 52720 ( 78 n); Pd: 0.995 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 52719 52652 ( 68 n); cDNA 402 469 ( 68 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E208654+ 1.000 469 1.000 C PGS_C10SLe0045H11.1-_SGN-E208654+ (54301 54281,54202 54067,53401 53272,52911 52798,52719 52652) Alignment (genomic DNA sequence = upper lines): ACATCAAGAA TTCTGTATAA GGTGAAATGT GTGCTCCTCG CTGTACTGCT AAGTTTCCCT 54242 |||||||||| |||||||||| | ACATCAAGAA TTCTGTATAA G......... .......... .......... .......... 21 TTTGGATGCG TTGTGATTTA TACAAATGTG GTTATTTAGG TATGGTGTCC TCCTTCCAGA 54182 | |||||||||| |||||||||| .......... .......... .......... .........G TATGGTGTCC TCCTTCCAGA 42 AGACCATGAA CGCAAAGATC CCTTAAGCAT GTCTGTTACC ATTCTGCGGC AATATGACAT 54122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACCATGAA CGCAAAGATC CCTTAAGCAT GTCTGTTACC ATTCTGCGGC AATATGACAT 102 CCTTCCTGAG ATGTACCAAG TTGGGTTTAC AAAGTTATAT TTTCGGGCAG GACAGGTAAG 54062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CCTTCCTGAG ATGTACCAAG TTGGGTTTAC AAAGTTATAT TTTCGGGCAG GACAG..... 157 TTTTTTTTTT CTTAGTTTCT CGAGTATACC TATGTTTTCT TTCTTTATAA AAAAATATTT 54002 .......... .......... .......... .......... .......... .......... 157 TGATTGCCAT AAATCATTGA TGCAGATGCA ACTTGTAACT TATTTAATCA TAGCTATTAC 53942 .......... .......... .......... .......... .......... .......... 157 AGAATTAAGC AAATAAAAAT TGTAATGTCT CTCAAAAATT AATTAGCTAC ATCACACGAG 53882 .......... .......... .......... .......... .......... .......... 157 AATTTCAGAT TTAAGAAGCA CATATGACCT CATATATTTC TGCAAATAGT CCCATGATAT 53822 .......... .......... .......... .......... .......... .......... 157 TAGAACAATG AGAAATGACA AAAGATGTGC TAATAATTTT TCTAGGGAAA ATGCACAAGT 53762 .......... .......... .......... .......... .......... .......... 157 ACCCCTTCAA CTACCCCTGA ACTTATTTTA TAAGTAATTT TCTATCCCTT TTCAGCCTAC 53702 .......... .......... .......... .......... .......... .......... 157 GTGGCACTAG CTTGAAAAAA AAGTCAAGCA GTGTTGGGCC CACAAGATAG TGCCACGTAG 53642 .......... .......... .......... .......... .......... .......... 157 GCCAAAAAGG GGTAGAAAAT TACTTATAAA ATAAGTTCAG GTGGGTAATA GGACTTTAAT 53582 .......... .......... .......... .......... .......... .......... 157 ATAGTATAAG TGTGTCTCTG ACATTTCAGG CATAGGTTGA GGGGGTACTT GTGCATTATC 53522 .......... .......... .......... .......... .......... .......... 157 CCATTTTTCT ATGATAAGTG CTAAATTTGG ACTTCCAATG AGGCAATGGG TGTGCATGTT 53462 .......... .......... .......... .......... .......... .......... 157 ACTAAAGAAT AAATTTCCTA GTCTATCAAT TTTCTGAACT TCTATCATGG CGACTTATAG 53402 .......... .......... .......... .......... .......... .......... 157 ATTGCTGTGC TGGAGGATGT GAGGAAACAA GTTCTGCAAG GCACTCTTGA GGTGCAAAAG 53342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCTGTGC TGGAGGATGT GAGGAAACAA GTTCTGCAAG GCACTCTTGA GGTGCAAAAG 217 TGCTACAGTG GTCCTCATGC TCGTCGTGAC TTCCATGAGC TCAAAGGAGT AGTGATCGTA 53282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTACAGTG GTCCTCATGC TCGTCGTGAC TTCCATGAGC TCAAAGGAGT AGTGATCGTA 277 CTTCAATCAT GTAAGGCTGA ACGTTTTGCA GCAGTTCATT TTTAGAAAGA ATGTTGTTCA 53222 |||||||||| CTTCAATCAT .......... .......... .......... .......... .......... 287 ACCTTCAAAG AAGTTATTAA TGAACAGAAT TTTCTCTCGC CAGTTTTATT TGTACATTAC 53162 .......... .......... .......... .......... .......... .......... 287 TTCTGTTTAT TTCAAACTAT TTCTCTTTTT CAGTTAAAAA AAAAAAAATA ACTGCTTTTT 53102 .......... .......... .......... .......... .......... .......... 287 CAAAATTATT TAGTCGATAA CTTCCAAGTT CTTGAGAAAC CAGTGATTCC ATATCCAAAC 53042 .......... .......... .......... .......... .......... .......... 287 TCCTTTCTCT CATTTCTTTC TTTCTTCGTT CCTTTCTTTT TAGTGGGAAT AAGTTGATGT 52982 .......... .......... .......... .......... .......... .......... 287 CATGGAATTT TCTAGAATTT TTAATTCGAG GTAGTACGTG GTGATATGAT GTCAAAATAT 52922 .......... .......... .......... .......... .......... .......... 287 TTTATTGTAG TTGTTCGTGG TGAAATTGCT CGAATGCAGT ATAAGGATTT TCTGGAGTCT 52862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... TTGTTCGTGG TGAAATTGCT CGAATGCAGT ATAAGGATTT TCTGGAGTCT 337 AAACAGAAAA ACGCTAATAA AGAAAATGAT GAGCAGCTGG TGGCTGCTCT GCAGATACAA 52802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAGAAAA ACGCTAATAA AGAAAATGAT GAGCAGCTGG TGGCTGCTCT GCAGATACAA 397 TCAGGTAAAG TTTTTTCTTT TGGCATCTAA GGTTACGAAT TTCAAATATG GATTTGTTTG 52742 |||| TCAG...... .......... .......... .......... .......... .......... 401 CCTAACTTTT CTTTTCTTGC AGCTATTCGT TGCTGGTTGG CTCATAGGCA ACTTAATCAA 52682 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..CTATTCGT TGCTGGTTGG CTCATAGGCA ACTTAATCAA 439 CTGCAGAAGT CAAAAAAGTT AAATCAAGAC 52652 |||||||||| |||||||||| |||||||||| CTGCAGAAGT CAAAAAAGTT AAATCAAGAC 469 hqPGS_C10SLe0045H11.1-_SGN-E208654+ (54301 54281,54202 54067,53401 53272,52911 52798,52719 52652) ******************************************************************************** EST sequence 28 -strand 858 n (File: SGN-E540411-) 1 TACATCAGTA TACGCGATTA ATCGCATGGT GAATACAGAA ACAAAGTTAG GGGATTTGTG 61 TTACCCTCTG GGGTCCAACT CATATTGGCA ACAATGTTAG TGCATCATGA TACTGAAATA 121 TGGGGAGATG ATGCAATGGA GTTTATGCCA GAGAGATTTA GTGAAGGAAT ATCAAAAGCA 181 ACAAAAGGAC AAGTTGTATT TTTTCCATTT AGTTGGGGTC CAAGAATATG TATTGGGCAA 241 AATTTTGCTA TGTTAGAGGC AAAAATGGCA ATGGTCATGA TTCTAAAACA TTATGCATTT 301 GAACTCTCTC CATCTTATGC TCATGCTCCT CACCCATTGT TGCTTCAACC TCAATATGGT 361 GCTCAATTGA TCATGCACAA GTTGTAGAAG TGGTTATCAC GTGTTGTCTT TTGAATCATG 421 TTATATCCTT TATTTATTGT TGGGATAATG TCCAAGTACC CCCTTAGCCT ATGTCCAAAA 481 TCTCAGAGAT ACACTTATAC CATACTAAGA TCTTATTACC CCCTGAACTT ATTTATTAAT 541 AATTTTTTAC CCCTTTTAGA CCTACGTGGC ACTATCTTGT GGGCCCAATG GTTGTTGACT 601 TTTTTTTTAA ACTAGTGCCA CGTAGGCTAA AAAGGGGTAG AAAATTACTT ATAAAATAAG 661 TTCAGGGGGG TAATAGGACC TTAGTATAGT ATAAGTGTGT CTCTGGAATT TCGGGCATAG 721 GTTGAGGGGG TACTTGTGCA TTATCCCTTT ATTGTTCTTT AATTATAGTT CAAGTGAAGT 781 CATATGTTGT TTTGTATAAG ACTGGAGAAT TTTATAATAA TAATATTAGT GTACTTTATG 841 TTTATGAGAA AAAAAAAA Predicted gene structure (within gDNA segment 60528 to 51810): Exon 1 59785 59773 ( 13 n); cDNA 449 461 ( 13 n); score: 0.692 Intron 1 59772 59559 ( 214 n); Pd: 0.000 (s: 0), Pa: 0.999 (s: 0) Exon 2 59558 59553 ( 6 n); cDNA 462 467 ( 6 n); score: 0.667 Intron 2 59552 56967 (2586 n); Pd: 0.445 (s: 0), Pa: 0.678 (s: 0) Exon 3 56966 56956 ( 11 n); cDNA 468 478 ( 11 n); score: 0.545 Intron 3 56955 55235 (1721 n); Pd: 0.580 (s: 0), Pa: 0.966 (s: 0) Exon 4 55234 55220 ( 15 n); cDNA 479 491 ( 13 n); score: 0.667 Intron 4 55219 54463 ( 757 n); Pd: 0.900 (s: 0), Pa: 0.967 (s: 0) Exon 5 54462 54448 ( 15 n); cDNA 492 506 ( 15 n); score: 0.600 Intron 5 54447 54183 ( 265 n); Pd: 0.000 (s: 0), Pa: 0.837 (s: 0) Exon 6 54182 54171 ( 12 n); cDNA 507 517 ( 11 n); score: 0.583 Intron 6 54170 53751 ( 420 n); Pd: 0.589 (s: 0), Pa: 0.000 (s: 0.80) Exon 7 53750 53512 ( 239 n); cDNA 518 755 ( 238 n); score: 0.797 Intron 7 53511 53089 ( 423 n); Pd: 0.000 (s: 0.88), Pa: 0.586 (s: 0) Exon 8 53088 53060 ( 29 n); cDNA 756 782 ( 27 n); score: 0.621 PPA cDNA 847 858 MATCH C10SLe0045H11.1- SGN-E540411- 0.797 340 0.396 C PGS_C10SLe0045H11.1-_SGN-E540411- (59785 59773,59558 59553,56966 56956,55234 55220,54462 54448,54182 54171,53750 53512,53088 53060) Alignment (genomic DNA sequence = upper lines): TGTGGCAGTG CCCGTTGGAG AGCTTTTACC TGCAAATCCA GATATTCTTC AGGGCGTGGA 59726 ||| ||| ||| TGTCCAAGTA CCC....... .......... .......... .......... .......... 461 TGATCTCAGA CAACTTTGTT ATCTTAATGA GCCATCGGTT CTTCACAACC TCCAATATAG 59666 .......... .......... .......... .......... .......... .......... 461 ACATGCTCAA GATAGAATAT ATGTGTGTAC TCTTAAGATA GCTCACTGTC TCATCAGATG 59606 .......... .......... .......... .......... .......... .......... 461 TAGAATATCA TGCCTTCTTT TAATGTTTTC TGTCCCTATG CTTACAGACT AAGGCAGGGC 59546 || || .......... .......... .......... .......... .......CCT TAG....... 467 CTGTTCTAAT AGCAGTCAAC CCCTTCAAAG AGATCCAATT GTATGGGAGC AAATTTGTTA 59486 .......... .......... .......... .......... .......... .......... 467 CAGCATACAA GCAGAAACTC TTGGATAGTC CTCACATTTA TTCTGTTGCT GAAACTGCCT 59426 .......... .......... .......... .......... .......... .......... 467 ACAGTCAAAT AATGGAAGGT CTTTATAATT CCTAAGTTCA TTCCTGGTCT CTGAAACTTT 59366 .......... .......... .......... .......... .......... .......... 467 TAGATGACAT TAGTTGATCC TTATTTTCTT GCTTCTCCTG TGCACCTTGC AGATGAAATA 59306 .......... .......... .......... .......... .......... .......... 467 AATCAATCCA TCATCATAAG GTTGGTTGAA GTGTCTCATT GTTAGAATTT GTAAAGCGAA 59246 .......... .......... .......... .......... .......... .......... 467 GTATCTGATG ATAGTAAAAG TGTTCCTCTA CACTGGTTGA GTAATTGCAT GTCTTGGTTG 59186 .......... .......... .......... .......... .......... .......... 467 TAATGATCAA ATTTGTGGTA AGCCTAATGC TTGTATTTTC AAACAACTAA CTTCTCTTCA 59126 .......... .......... .......... .......... .......... .......... 467 TATCATTTAG TGGGGAAAGT GGATCTGGGA AGACGGAAAC AGCAAAATTT GTGATTGAAT 59066 .......... .......... .......... .......... .......... .......... 467 ATTTGGTTAT GATTAGTGGA GGCAACAATC GTGTAGAAAG TGAGCTGCTG CAGTCAAGTT 59006 .......... .......... .......... .......... .......... .......... 467 ACATATTGGA GGCTTTTGGA AATGCTAAAA CCCTCAGGAA TAACAACTCC AGTCGATTTG 58946 .......... .......... .......... .......... .......... .......... 467 TCAGTCTCTA CATCTTCCTT TGTTTGCTAT CTTTTTTTGG GGGGTGGGGG TGGGGGTAGG 58886 .......... .......... .......... .......... .......... .......... 467 GGTGTAAATT GAATAACTAC TTTGGATTGG TTATGGCCCT TTTATGCACT TGAACTAACA 58826 .......... .......... .......... .......... .......... .......... 467 GATGCTCTGA TGAGTTGCAG GGAAGGTTGA TTGAAATTTA TTTTAGTGCA GAGGGAGGAA 58766 .......... .......... .......... .......... .......... .......... 467 TTTGTGGTGC TAATGTACAA GCATGTAAGG ATGTTAATTG AGATGAATTT CCTTACAAAA 58706 .......... .......... .......... .......... .......... .......... 467 AAAAAGTCTT GTCACTTGTT ACTTGTTAAT ATTGTTTTTG GTATCAATTT GTTGAAATTG 58646 .......... .......... .......... .......... .......... .......... 467 TTTTGTAATG TTATTTGTCC CATGTTACTG ACTTCTACCA ATCTTTGTGC ATGTCTAATA 58586 .......... .......... .......... .......... .......... .......... 467 TGTTGATGCT TAAATAATGG ATAGTTCTTC TTGAAAAGGT GGGCATTTTT CTCTTGTGTA 58526 .......... .......... .......... .......... .......... .......... 467 TTCTTCCTTG TATTTTCTTG CTATAATTGT GTCTGTTCAT CAGAGCTGAA TCTTTCTGAG 58466 .......... .......... .......... .......... .......... .......... 467 ACATGTCTAA TTTGGCAGTC TAGAGTGGTT CAACTGGCTC ATGGAGAGAG GTCTTACCAT 58406 .......... .......... .......... .......... .......... .......... 467 ATCTTTTACC AACTATGTGC TGGGGCTCCT TCTTCTTTGA GAGGTTTGGA TTCTGATATT 58346 .......... .......... .......... .......... .......... .......... 467 GAACTTTTCA TTATAGTCTT CTTTTGTTAC TTATTTTACT TGTTTTGGGC TTTACATCTG 58286 .......... .......... .......... .......... .......... .......... 467 TCATGGGCTC CACATTTTAA TTTCTCAGTA GGATGTGATT TTTCAGTAAT TTCTCTGAAT 58226 .......... .......... .......... .......... .......... .......... 467 TTATAAACAT TTTCAAGCCG TGAACCATCT TCTATTGTTA CTGTTGTGTT GTACTACCTG 58166 .......... .......... .......... .......... .......... .......... 467 TAAGATGTTT CTCTTCATAC CTTTTTCAGA ATGGATATTA CTATGATTCT AAAAGCAACA 58106 .......... .......... .......... .......... .......... .......... 467 TAGGAGCTAT AATTTTCTGA ACAAGTGCTT TTCATTATCA GAAAACATTA GTTGAAGAAC 58046 .......... .......... .......... .......... .......... .......... 467 TTTTGTTGGT GATGGTGATC TTTTGTTTGA ATTTGTGATA TTGTAATGGT AAATATGCGT 57986 .......... .......... .......... .......... .......... .......... 467 CAACTTGCAA TCACAAGTCT GTAGTTATTT TTTTTACTGG ATGCTGTTGA ATGTGGAATA 57926 .......... .......... .......... .......... .......... .......... 467 CAATAGGTAT CTGCTTGGTG CATGAAAGTT TGAGTTGGAA AATTTGGAAT TTGAGCATAA 57866 .......... .......... .......... .......... .......... .......... 467 ACTAGATGGA GTAGAGTAGA TTATATCAAG TGACTGGAAA CACCTGCAAC ACTGTCTTTG 57806 .......... .......... .......... .......... .......... .......... 467 AATGAAATTC TTTGAGTTCT ATGTACATAT ATGTGTGCTT TTTTCTTTTT GGTTCAAAAG 57746 .......... .......... .......... .......... .......... .......... 467 ACCACCTGAC ATAATATTAG GCATTTCAAC TTCTTTGGCT TTCGATTATT CTAGAAGTGG 57686 .......... .......... .......... .......... .......... .......... 467 GACCACTGTT TCTTGGCTAG ATGTGTGATT CAATACTCTA CAGCTCTGAA TAATTCTTTT 57626 .......... .......... .......... .......... .......... .......... 467 TTGTGTCTCT TTTTTAAAAG GAGAGGTGGG TGTTAAACAT TGAAGTCCTT GAAAGATTTT 57566 .......... .......... .......... .......... .......... .......... 467 GTACCTTCAC ATTCAGAACA TTTGTGTGAT TCTTTTGGCA GATAAACTTA AGCTGAAAGG 57506 .......... .......... .......... .......... .......... .......... 467 TGCTTCGGAG TACAACTTTC TCAACCAGAG TGATTCGTTA GAGATCCATA ATGTTGATGA 57446 .......... .......... .......... .......... .......... .......... 467 TGCAAAAAAG TTTCATATGC TTGTGGTGAG CTCAAGGGAT CAGATTGGTT AATTTAGATT 57386 .......... .......... .......... .......... .......... .......... 467 TTAATTCTAT TGCATTCAAT TCAAAGTAAT GTAGGATCAT TTTGTTGTTA TTAATTCCTT 57326 .......... .......... .......... .......... .......... .......... 467 TGATGTACTC CCTTTTCAGA AAGCCCTAAA CACTGCGGGG ATTTCTGAAA GAGACCAGGA 57266 .......... .......... .......... .......... .......... .......... 467 ACATACTTTT CAGATGGTTG CTGCAGTGCT ATGGCTGGGA AACATAACAT TCCAAGCAAT 57206 .......... .......... .......... .......... .......... .......... 467 TGGCAATGGA AACAATGTTG AAGTTGTGCA ATGTGAAGGT GAGCTATTTA TGTGAAGTGC 57146 .......... .......... .......... .......... .......... .......... 467 AATTTTGCTA ATTTTGCACT ATAATGTTCT TTCTCCTTTG AGACAGTGTA TTGTTTTGTC 57086 .......... .......... .......... .......... .......... .......... 467 ATTGTCAGTT TTGCTACTTT TCCTGGACTT GTATTTTCAA CTGCAAGTTT ACTCTTTTGT 57026 .......... .......... .......... .......... .......... .......... 467 AATCATCTTT TCTCTGAGCC TTTGAGGTTC TATTTTAAGG TGTTTTTTCA CTCTTTTAGG 56966 .......... .......... .......... .......... .......... .........C 468 CCATGAGCAG GTTATAACGT CATAAAACCT TTTTTTAGGC TTTATGGGAA ATTTTTTTGC 56906 | ||| || CTATGTCCAA .......... .......... .......... .......... .......... 478 TTTCTCAAGA TAATTCTTTT CTTTCCCCTT TTTCCTTGTG TTCTTCCATT TATGACTATT 56846 .......... .......... .......... .......... .......... .......... 478 TTGATTTTTG TGTCTCTTTC ATGCGAGGAT TTTGAATTAT GCCTTATTGT GCTAGTTTCC 56786 .......... .......... .......... .......... .......... .......... 478 TGATACAGTT TTTATAGGTT TTTTATAATT GTGCTTAACT GGAGGTACTA AAGCTAACAT 56726 .......... .......... .......... .......... .......... .......... 478 GTTTGGTATT TTACTATTCT GGTGTTGCAG CCGTTATAAA TGCTGCTAGT TTGATGGGCT 56666 .......... .......... .......... .......... .......... .......... 478 GTAGTGCTAA TGACCTCATG CTAGCTTTAT CAACCAGGAA AGTACAAACT GGCAAAGATA 56606 .......... .......... .......... .......... .......... .......... 478 AGGTTGTCAA GAGTTTAACC ATGCAACAGG TTCGTTACTC AGTTGTATGG GCTCTGCATC 56546 .......... .......... .......... .......... .......... .......... 478 AAATACGTTA TTTTTGCAGT TTTGATTTCG GAACTCCTAC CTTTTCTTTC AAGAACCATA 56486 .......... .......... .......... .......... .......... .......... 478 ACGGAATGGT TTTAACTCTG ATTCAGGCAA TTGATACAAG AGATGCAATG GCCAAGTTCA 56426 .......... .......... .......... .......... .......... .......... 478 TCTATGCAAA CCTGTTTGAC TGGATAGTGG ATAAAATTAA TAGATCTCTT GCAATGGATA 56366 .......... .......... .......... .......... .......... .......... 478 AAGAGAAGAC TGGTAGAAGA ATAAACATTT TAGATATTTA TGGTTTCGAA TCATTTGAGG 56306 .......... .......... .......... .......... .......... .......... 478 TAAATTGATT TTCAAGATGT TGTTACTATT GTAAAACATA AAAAGATATC TGTTATCCCA 56246 .......... .......... .......... .......... .......... .......... 478 CTTGCCATTT TTTCTTTGCA GAAAAATAAC TTTGAACAAT TTTGCATTAA CTATGCAAAT 56186 .......... .......... .......... .......... .......... .......... 478 GAGAGGCTCC AGCAGCATTG TTACCGACAT CTCTTCAAAC TTGAGCAAGA AGTAAGCACA 56126 .......... .......... .......... .......... .......... .......... 478 TCAGCATGCT TCATAGTTAC TGACTTCTTG TTTCTTCATG CATTTTCTTT TGGGATAATG 56066 .......... .......... .......... .......... .......... .......... 478 TTCTTATTTC TTTATTCCTT TCAGTTACTC ACTTCTTTTT ACATAAATAG GAAAACAAAG 56006 .......... .......... .......... .......... .......... .......... 478 AACTAGGCTT TTTGCTGACT TTGCATCAGC TGATTATAAT ATAAGTGGAG TTTTTACCTT 55946 .......... .......... .......... .......... .......... .......... 478 GTAAAAGAAA GAGTGAAATT TTTCATGAAA ACTGGAGTGA GAAAGTCTGA TCTCATATTT 55886 .......... .......... .......... .......... .......... .......... 478 TAGGACCTCG GGTGCTGTCT GCAAATGTTG TTATGTTGTG CAGACGAAAT AAAGATCGTT 55826 .......... .......... .......... .......... .......... .......... 478 GTCAGACACT TTTCTCTCTG ATTTGTGGCA TATCTGAGCC TTATTCTGAC TCCTGTAGAT 55766 .......... .......... .......... .......... .......... .......... 478 ACTTACTACA GCTTATGTCA GATAGTGATC CCAAAACTGA TGTATTGTAA TTCAGGAATA 55706 .......... .......... .......... .......... .......... .......... 478 TGAATTGGAT GGAATTGATT GGACAAAGGT AGATTTTCAA GACAACCAAG ACTGCTTGGA 55646 .......... .......... .......... .......... .......... .......... 478 TCTATTTGAA AAGGTATGTC TGACTTTTGG GTCTTTTCTT CCACTCATTT TGCATTCAAT 55586 .......... .......... .......... .......... .......... .......... 478 AATGTTCATT GTCTGCTAAA TTTCTTTGCT TCAGATTACT CTTCTAACAC TTCAGCACAA 55526 .......... .......... .......... .......... .......... .......... 478 CACAGTCATT ATCTTGTTTT GTTTTCTCTT GTATTGTTCT TACTCTTTCT CATATTCAAT 55466 .......... .......... .......... .......... .......... .......... 478 TGTTGATTTG GATAAGAAGA GACACTTGTT CCCTTATTAG AAAAGAAGAG ACACTTGTTC 55406 .......... .......... .......... .......... .......... .......... 478 ATTCTGATAA TCATAATTTT GATGGTCATC ATTTACACAC GCTATATTCT CATATTGTAG 55346 .......... .......... .......... .......... .......... .......... 478 AAGTTAAAAC TACTTCTTGG CAGTGAAGTT GTGAAAATGC TAACATATTC AGTAGACGTT 55286 .......... .......... .......... .......... .......... .......... 478 CTTATGATAA ATCATCACCT GATCTTTGGA TTCTAATGAT GCCTTCTGCA GAAACCCATT 55226 || | || .......... .......... .......... .......... .......... .AATCTCA-- 485 GGGATAATAT CTTTATTGGA TGAAGAATCA AATTTTGATA AAGCGACTGA CTTGGCCTTC 55166 | |||| GAGATA.... .......... .......... .......... .......... .......... 491 GCCAATAAGC TTAAGCAGCA CCTGAAAGCT AACCCTTGCT ATAGAGGAGA TACGGAAGAA 55106 .......... .......... .......... .......... .......... .......... 491 TTTGGCATTC GCCATTATGC TGGAGAGGTC AGTTTCTTTC AGAAATGTGT CCTTTTTGGC 55046 .......... .......... .......... .......... .......... .......... 491 GTCAGTCTTG AGAACTTGTG CCCTATGATA TATATGTAGT CATGAAAGAT AATTTCCTTG 54986 .......... .......... .......... .......... .......... .......... 491 CTTGAACTGA GACTCGTGTG AGGAAATTAA GGTTTGGAAT CTGATGCATT AGAATTTGCA 54926 .......... .......... .......... .......... .......... .......... 491 AAAGGGTAAC AATTGATGTT TCAGGAAATG AAGATCAATA AGCTTCTTTC AAATATCTTT 54866 .......... .......... .......... .......... .......... .......... 491 GGTATTGTTG CTAGCTTTAA ACATTTCTGT TTTATCATTG TAAAAGTTTT TTCATCTTGT 54806 .......... .......... .......... .......... .......... .......... 491 TTAGGTTATC TATGACACAA GTGGTTTCTT GAATAAGAAT AGAGATCCAG TGCATCCCGA 54746 .......... .......... .......... .......... .......... .......... 491 CACTATTCAG CTACTCTCAT TGAGCAGTGA AGACTTGCTC AAGTTGTTTG CCTCCTCTTT 54686 .......... .......... .......... .......... .......... .......... 491 TGCTAATCAG TCCAAGAAAA CAGCAAGTTC AAGTCATATC AAGATATCAG ACTTTCAGAA 54626 .......... .......... .......... .......... .......... .......... 491 GCAAACAGTT GCTACTAAAT TTAAGGTAGT AATGCCATTT TCTTAATTTC TTATAAGCAT 54566 .......... .......... .......... .......... .......... .......... 491 TTTATGTTAA ATATTTGAGA AAATAACTGT GTTATAATGC TGAAAAAATA GTCAATATTG 54506 .......... .......... .......... .......... .......... .......... 491 TCTTTATCAA ATCTTGCAGG ATGTGTTGTT CAAATTGATG CAGCAGTTGG AAAGTACTGC 54446 || || | |||| .......... .......... .......... .......... ...CACTTAT ACCATACT.. 506 GCCACACTTC ATTTGTTGCA TAAAACCGAA CAATAAGCAG GTTCCTGGCA TGTACAGCAA 54386 .......... .......... .......... .......... .......... .......... 506 TGATCTCGTC TTTGAGCAGC TCAGAAGCTA CAGTCTTCTT GAGGTTGTTC GGATCTGTAG 54326 .......... .......... .......... .......... .......... .......... 506 ATCTGGGTAT CCTACTAGGA TGACACATCA AGAATTCTGT ATAAGGTGAA ATGTGTGCTC 54266 .......... .......... .......... .......... .......... .......... 506 CTCGCTGTAC TGCTAAGTTT CCCTTTTGGA TGCGTTGTGA TTTATACAAA TGTGGTTATT 54206 .......... .......... .......... .......... .......... .......... 506 TAGGTATGGT GTCCTCCTTC CAGAAGACCA TGAACGCAAA GATCCCTTAA GCATGTCTGT 54146 |||| | | | .......... .......... ...AAGATC- TTATT..... .......... .......... 517 TACCATTCTG CGGCAATATG ACATCCTTCC TGAGATGTAC CAAGTTGGGT TTACAAAGTT 54086 .......... .......... .......... .......... .......... .......... 517 ATATTTTCGG GCAGGACAGG TAAGTTTTTT TTTTCTTAGT TTCTCGAGTA TACCTATGTT 54026 .......... .......... .......... .......... .......... .......... 517 TTCTTTCTTT ATAAAAAAAT ATTTTGATTG CCATAAATCA TTGATGCAGA TGCAACTTGT 53966 .......... .......... .......... .......... .......... .......... 517 AACTTATTTA ATCATAGCTA TTACAGAATT AAGCAAATAA AAATTGTAAT GTCTCTCAAA 53906 .......... .......... .......... .......... .......... .......... 517 AATTAATTAG CTACATCACA CGAGAATTTC AGATTTAAGA AGCACATATG ACCTCATATA 53846 .......... .......... .......... .......... .......... .......... 517 TTTCTGCAAA TAGTCCCATG ATATTAGAAC AATGAGAAAT GACAAAAGAT GTGCTAATAA 53786 .......... .......... .......... .......... .......... .......... 517 TTTTTCTAGG GAAAATGCAC AAGTACCCCT TCAACTACCC CTGAACTTAT TTTATAAGTA 53726 ||| ||||||||| ||||| | || .......... .......... .......... .....ACCCC CTGAACTTA- TTTATTAATA 541 ATTTTCTATC CCTTTTCAGC CTACGTGGCA CTAGCTTG-A AAAAAAAGTC AAGCAGTGTT 53667 ||||| || | |||||| | |||||||||| ||| |||| || | | || ATTTTTTACC CCTTTTAGAC CTACGTGGCA CTATCTTGTG GGCCCAATGG TTGTTGACTT 601 GGGCCCACAA GATAGTGCCA CGTAGGCCAA AAAGGGGTAG AAAATTACTT ATAAAATAAG 53607 || |||||||| ||||||| || |||||||||| |||||||||| |||||||||| -TTTTTTTAA ACTAGTGCCA CGTAGGCTAA AAAGGGGTAG AAAATTACTT ATAAAATAAG 660 TTCAGGTGGG TAATAGGACT TTAATATAGT ATAAGTGTGT CTCTGACATT TCAGGCATAG 53547 |||||| ||| ||||||||| ||| |||||| |||||||||| ||||| ||| || ||||||| TTCAGGGGGG TAATAGGACC TTAGTATAGT ATAAGTGTGT CTCTGGAATT TCGGGCATAG 720 GTTGAGGGGG TACTTGTGCA TTATCCCATT TTTCTATGAT AAGTGCTAAA TTTGGACTTC 53487 |||||||||| |||||||||| ||||||| || || | GTTGAGGGGG TACTTGTGCA TTATCCCTTT ATTGT..... .......... .......... 755 CAATGAGGCA ATGGGTGTGC ATGTTACTAA AGAATAAATT TCCTAGTCTA TCAATTTTCT 53427 .......... .......... .......... .......... .......... .......... 755 GAACTTCTAT CATGGCGACT TATAGATTGC TGTGCTGGAG GATGTGAGGA AACAAGTTCT 53367 .......... .......... .......... .......... .......... .......... 755 GCAAGGCACT CTTGAGGTGC AAAAGTGCTA CAGTGGTCCT CATGCTCGTC GTGACTTCCA 53307 .......... .......... .......... .......... .......... .......... 755 TGAGCTCAAA GGAGTAGTGA TCGTACTTCA ATCATGTAAG GCTGAACGTT TTGCAGCAGT 53247 .......... .......... .......... .......... .......... .......... 755 TCATTTTTAG AAAGAATGTT GTTCAACCTT CAAAGAAGTT ATTAATGAAC AGAATTTTCT 53187 .......... .......... .......... .......... .......... .......... 755 CTCGCCAGTT TTATTTGTAC ATTACTTCTG TTTATTTCAA ACTATTTCTC TTTTTCAGTT 53127 .......... .......... .......... .......... .......... .......... 755 AAAAAAAAAA AAATAACTGC TTTTTCAAAA TTATTTAGTC GATAACTTCC AAGTTCTTGA 53067 || ||| || ||||| | .......... .......... .......... ........TC TTTAA-TT-A TAGTTCAAGT 775 GAAACCA 53060 ||| || GAAGTCA 782 hqPGS_C10SLe0045H11.1-_SGN-E540411- (53750 53512) ******************************************************************************** EST sequence 90 +strand 792 n (File: SGN-E540167+) 1 TTTCTTTTTT TTTTTTTTTT TTTTATTATA ATAGCTTGTG CTTTAATTTC ATAACTATAA 61 CCTTAAATAT CTTTTCATAC ACTCACAAAT ACAAAATCTC CATATATGCA TTATTTTCTC 121 TCATCCCCTT AAATTCATAC AAATGCAAAA CCAAAAAAAA AAATACTATG TTTTTGTTTG 181 GGATAATGCA CAGGTAACCA TTCAACCTAT GCACGAAATC TCAAAGACAC ACTTATACTA 241 TACTAATGTC TTATTATCCC CTGAATTTAT TTTATTAACA ATTTTTCTAC TTCTTTTCAG 301 CCTACGTGGC ACTATCTTGT GGGTCCAACA CTGATTGACT TTTTTTTCAA ATTAGTGTCA 361 CGTAAGTCGA AAAAGAGTAG AAAATTATTT ATAAAATAAG TTCAGAGGGT AATAGGACTT 421 TAGTATAGTA TAAGTGTGTC TCTGGAATTT CGAGCATAGT TTGAGAGGCA GTGCATTTTC 481 CCTATTTATT TCAACAAATT TGTTTTCTAT TTTTTAAACA ACTAAAGTGT TATTTTTATT 541 TAAAAAAAAA AAGAATAATT GTCTGAAGTG GGATCCACAA CATAGTATTG GGCCCATGAA 601 GCTTAATGGG CCCTTTCAGT CCAAACACAC TTCCCAAGAA GATACAGAAA CTCTCACATC 661 AATTTTTTTT TCCTATAAAA ACTCTTTTCC ATTTTTGTGG GGTCTATTAA AAATCAAAAT 721 TCATCCCTAA AGCACAAAGT ACTACTTTTC CCTCCATTCA AAAAAAAAAA AAAAAACCCT 781 AAAAATGGGT TC Predicted gene structure (within gDNA segment 58098 to 48272): Exon 1 56041 56007 ( 35 n); cDNA 115 149 ( 35 n); score: 0.629 Intron 1 56006 55843 ( 164 n); Pd: 0.000 (s: 0), Pa: 0.887 (s: 0) Exon 2 55842 55829 ( 14 n); cDNA 150 163 ( 14 n); score: 0.643 Intron 2 55828 55711 ( 118 n); Pd: 0.000 (s: 0), Pa: 0.990 (s: 0) Exon 3 55710 55678 ( 33 n); cDNA 164 193 ( 30 n); score: 0.545 Intron 3 55677 55552 ( 126 n); Pd: 0.380 (s: 0), Pa: 0.120 (s: 0) Exon 4 55551 55522 ( 30 n); cDNA 194 223 ( 30 n); score: 0.533 Intron 4 55521 55450 ( 72 n); Pd: 0.885 (s: 0), Pa: 0.037 (s: 0) Exon 5 55449 55435 ( 15 n); cDNA 224 238 ( 15 n); score: 0.800 Intron 5 55434 55235 ( 200 n); Pd: 0.000 (s: 0), Pa: 0.966 (s: 0) Exon 6 55234 55220 ( 15 n); cDNA 239 253 ( 15 n); score: 0.467 Intron 6 55219 54203 (1017 n); Pd: 0.900 (s: 0), Pa: 0.997 (s: 0) Exon 7 54202 54198 ( 5 n); cDNA 254 258 ( 5 n); score: 0.600 Intron 7 54197 53748 ( 450 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.81) Exon 8 53747 53515 ( 233 n); cDNA 259 487 ( 229 n); score: 0.742 Intron 8 53514 53402 ( 113 n); Pd: 0.000 (s: 0.72), Pa: 0.997 (s: 0) Exon 9 53401 53396 ( 6 n); cDNA 488 493 ( 6 n); score: 0.667 Intron 9 53395 51200 (2196 n); Pd: 0.000 (s: 0), Pa: 0.996 (s: 0) Exon 10 51199 51185 ( 15 n); cDNA 494 508 ( 15 n); score: 0.733 Intron 10 51184 50456 ( 729 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 11 50455 50434 ( 22 n); cDNA 509 529 ( 21 n); score: 0.682 Intron 11 50433 50371 ( 63 n); Pd: 0.545 (s: 0), Pa: 0.865 (s: 0) Exon 12 50370 50357 ( 14 n); cDNA 530 543 ( 14 n); score: 0.786 Intron 12 50356 49412 ( 945 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 13 49411 49402 ( 10 n); cDNA 544 553 ( 10 n); score: 1.000 PPA cDNA 760 777 MATCH C10SLe0045H11.1- SGN-E540167+ 0.742 447 0.564 C PGS_C10SLe0045H11.1-_SGN-E540167+ (56041 56007,55842 55829,55710 55678,55551 55522,55449 55435,55234 55220,54202 54198,53747 53515,53401 53396,51199 51185,50455 50434,50370 50357,49411 49402) Alignment (genomic DNA sequence = upper lines): TTACTCACTT CTTTTTACAT AAATAGGAAA ACAAAGAACT AGGCTTTTTG CTGACTTTGC 55982 || ||| | | | ||| || ||| || |||| TTTCTCTCAT CCCCTTAAAT TCATACAAAT GCAAA..... .......... .......... 149 ATCAGCTGAT TATAATATAA GTGGAGTTTT TACCTTGTAA AAGAAAGAGT GAAATTTTTC 55922 .......... .......... .......... .......... .......... .......... 149 ATGAAAACTG GAGTGAGAAA GTCTGATCTC ATATTTTAGG ACCTCGGGTG CTGTCTGCAA 55862 .......... .......... .......... .......... .......... .......... 149 ATGTTGTTAT GTTGTGCAGA CGAAATAAAG ATCGTTGTCA GACACTTTTC TCTCTGATTT 55802 | | ||| ||| | .......... .........A CCAAAAAAAA AAA....... .......... .......... 163 GTGGCATATC TGAGCCTTAT TCTGACTCCT GTAGATACTT ACTACAGCTT ATGTCAGATA 55742 .......... .......... .......... .......... .......... .......... 163 GTGATCCCAA AACTGATGTA TTGTAATTCA GGAATATGAA TTGGATGGAA TTGATTGGAC 55682 | |||| || | | | | | | | | .......... .......... .......... .TACTATGTT TTTGTTTGGG AT-AAT-G-C 189 AAAGGTAGAT TTTCAAGACA ACCAAGACTG CTTGGATCTA TTTGAAAAGG TATGTCTGAC 55622 | || ACAG...... .......... .......... .......... .......... .......... 193 TTTTGGGTCT TTTCTTCCAC TCATTTTGCA TTCAATAATG TTCATTGTCT GCTAAATTTC 55562 .......... .......... .......... .......... .......... .......... 193 TTTGCTTCAG ATTACTCTTC TAACACTTCA GCACAACACA GTCATTATCT TGTTTTGTTT 55502 | || ||| | | | || | | | || .......... GTAACCATTC AACCTATGCA CGAAATCTCA .......... .......... 223 TCTCTTGTAT TGTTCTTACT CTTTCTCATA TTCAATTGTT GATTTGGATA AGAAGAGACA 55442 |||| ||| .......... .......... .......... .......... .......... ..AAGACACA 231 CTTGTTCCCT TATTAGAAAA GAAGAGACAC TTGTTCATTC TGATAATCAT AATTTTGATG 55382 ||| | | CTTATAC... .......... .......... .......... .......... .......... 238 GTCATCATTT ACACACGCTA TATTCTCATA TTGTAGAAGT TAAAACTACT TCTTGGCAGT 55322 .......... .......... .......... .......... .......... .......... 238 GAAGTTGTGA AAATGCTAAC ATATTCAGTA GACGTTCTTA TGATAAATCA TCACCTGATC 55262 .......... .......... .......... .......... .......... .......... 238 TTTGGATTCT AATGATGCCT TCTGCAGAAA CCCATTGGGA TAATATCTTT ATTGGATGAA 55202 | | | || || .......... .......... .......TAT ACTAATGTCT TA........ .......... 253 GAATCAAATT TTGATAAAGC GACTGACTTG GCCTTCGCCA ATAAGCTTAA GCAGCACCTG 55142 .......... .......... .......... .......... .......... .......... 253 AAAGCTAACC CTTGCTATAG AGGAGATACG GAAGAATTTG GCATTCGCCA TTATGCTGGA 55082 .......... .......... .......... .......... .......... .......... 253 GAGGTCAGTT TCTTTCAGAA ATGTGTCCTT TTTGGCGTCA GTCTTGAGAA CTTGTGCCCT 55022 .......... .......... .......... .......... .......... .......... 253 ATGATATATA TGTAGTCATG AAAGATAATT TCCTTGCTTG AACTGAGACT CGTGTGAGGA 54962 .......... .......... .......... .......... .......... .......... 253 AATTAAGGTT TGGAATCTGA TGCATTAGAA TTTGCAAAAG GGTAACAATT GATGTTTCAG 54902 .......... .......... .......... .......... .......... .......... 253 GAAATGAAGA TCAATAAGCT TCTTTCAAAT ATCTTTGGTA TTGTTGCTAG CTTTAAACAT 54842 .......... .......... .......... .......... .......... .......... 253 TTCTGTTTTA TCATTGTAAA AGTTTTTTCA TCTTGTTTAG GTTATCTATG ACACAAGTGG 54782 .......... .......... .......... .......... .......... .......... 253 TTTCTTGAAT AAGAATAGAG ATCCAGTGCA TCCCGACACT ATTCAGCTAC TCTCATTGAG 54722 .......... .......... .......... .......... .......... .......... 253 CAGTGAAGAC TTGCTCAAGT TGTTTGCCTC CTCTTTTGCT AATCAGTCCA AGAAAACAGC 54662 .......... .......... .......... .......... .......... .......... 253 AAGTTCAAGT CATATCAAGA TATCAGACTT TCAGAAGCAA ACAGTTGCTA CTAAATTTAA 54602 .......... .......... .......... .......... .......... .......... 253 GGTAGTAATG CCATTTTCTT AATTTCTTAT AAGCATTTTA TGTTAAATAT TTGAGAAAAT 54542 .......... .......... .......... .......... .......... .......... 253 AACTGTGTTA TAATGCTGAA AAAATAGTCA ATATTGTCTT TATCAAATCT TGCAGGATGT 54482 .......... .......... .......... .......... .......... .......... 253 GTTGTTCAAA TTGATGCAGC AGTTGGAAAG TACTGCGCCA CACTTCATTT GTTGCATAAA 54422 .......... .......... .......... .......... .......... .......... 253 ACCGAACAAT AAGCAGGTTC CTGGCATGTA CAGCAATGAT CTCGTCTTTG AGCAGCTCAG 54362 .......... .......... .......... .......... .......... .......... 253 AAGCTACAGT CTTCTTGAGG TTGTTCGGAT CTGTAGATCT GGGTATCCTA CTAGGATGAC 54302 .......... .......... .......... .......... .......... .......... 253 ACATCAAGAA TTCTGTATAA GGTGAAATGT GTGCTCCTCG CTGTACTGCT AAGTTTCCCT 54242 .......... .......... .......... .......... .......... .......... 253 TTTGGATGCG TTGTGATTTA TACAAATGTG GTTATTTAGG TATGGTGTCC TCCTTCCAGA 54182 ||| .......... .......... .......... .........T TATC...... .......... 258 AGACCATGAA CGCAAAGATC CCTTAAGCAT GTCTGTTACC ATTCTGCGGC AATATGACAT 54122 .......... .......... .......... .......... .......... .......... 258 CCTTCCTGAG ATGTACCAAG TTGGGTTTAC AAAGTTATAT TTTCGGGCAG GACAGGTAAG 54062 .......... .......... .......... .......... .......... .......... 258 TTTTTTTTTT CTTAGTTTCT CGAGTATACC TATGTTTTCT TTCTTTATAA AAAAATATTT 54002 .......... .......... .......... .......... .......... .......... 258 TGATTGCCAT AAATCATTGA TGCAGATGCA ACTTGTAACT TATTTAATCA TAGCTATTAC 53942 .......... .......... .......... .......... .......... .......... 258 AGAATTAAGC AAATAAAAAT TGTAATGTCT CTCAAAAATT AATTAGCTAC ATCACACGAG 53882 .......... .......... .......... .......... .......... .......... 258 AATTTCAGAT TTAAGAAGCA CATATGACCT CATATATTTC TGCAAATAGT CCCATGATAT 53822 .......... .......... .......... .......... .......... .......... 258 TAGAACAATG AGAAATGACA AAAGATGTGC TAATAATTTT TCTAGGGAAA ATGCACAAGT 53762 .......... .......... .......... .......... .......... .......... 258 ACCCCTTCAA CTACCCCTGA ACTTATTTTA -TAAGTAATT TTCTATCCCT TTTCAGCCTA 53703 |||||| | |||||||| ||| | || ||||| || |||||||||| .......... ....CCCTGA ATTTATTTTA TTAACAATTT TTCTACTTCT TTTCAGCCTA 304 CGTGGCACTA GCTTGAAAAA AAAGTCAAGC AGTG-TTGGG CCCACAAGAT AGTGCCACGT 53644 |||||||||| |||| | || | || | ||| | |||| ||||| CGTGGCACTA TCTTGTGGGT CCA-ACACTG ATTGACTTTT TTTTCAAATT AGTGTCACGT 363 AGGCCAAAAA GGGGTAGAAA ATTACTTATA AAATAAGTTC AGGTGGGTAA TAGGACTTTA 53584 | | | |||| | ||||||| |||| ||||| |||||||||| | | |||||| |||||||||| AAGTCGAAAA AGAGTAGAAA ATTATTTATA AAATAAGTTC A-GAGGGTAA TAGGACTTTA 422 ATATAGTATA AGTGTGTCTC TGACATTTCA GGCATAGGTT GAGGGGGTAC TTGTGCATTA 53524 ||||||||| |||||||||| || ||||| |||||| || || | || | ||||||| GTATAGTATA AGTGTGTCTC TGGAATTTCG AGCATAGTTT GA-GAGG--C -AGTGCATTT 478 TCCCATTTTT CTATGATAAG TGCTAAATTT GGACTTCCAA TGAGGCAATG GGTGTGCATG 53464 |||| ||| TCCCTATTT. .......... .......... .......... .......... .......... 487 TTACTAAAGA ATAAATTTCC TAGTCTATCA ATTTTCTGAA CTTCTATCAT GGCGACTTAT 53404 .......... .......... .......... .......... .......... .......... 487 AGATTGCTGT GCTGGAGGAT GTGAGGAAAC AAGTTCTGCA AGGCACTCTT GAGGTGCAAA 53344 ||| | ..ATTTCA.. .......... .......... .......... .......... .......... 493 AGTGCTACAG TGGTCCTCAT GCTCGTCGTG ACTTCCATGA GCTCAAAGGA GTAGTGATCG 53284 .......... .......... .......... .......... .......... .......... 493 TACTTCAATC ATGTAAGGCT GAACGTTTTG CAGCAGTTCA TTTTTAGAAA GAATGTTGTT 53224 .......... .......... .......... .......... .......... .......... 493 CAACCTTCAA AGAAGTTATT AATGAACAGA ATTTTCTCTC GCCAGTTTTA TTTGTACATT 53164 .......... .......... .......... .......... .......... .......... 493 ACTTCTGTTT ATTTCAAACT ATTTCTCTTT TTCAGTTAAA AAAAAAAAAA TAACTGCTTT 53104 .......... .......... .......... .......... .......... .......... 493 TTCAAAATTA TTTAGTCGAT AACTTCCAAG TTCTTGAGAA ACCAGTGATT CCATATCCAA 53044 .......... .......... .......... .......... .......... .......... 493 ACTCCTTTCT CTCATTTCTT TCTTTCTTCG TTCCTTTCTT TTTAGTGGGA ATAAGTTGAT 52984 .......... .......... .......... .......... .......... .......... 493 GTCATGGAAT TTTCTAGAAT TTTTAATTCG AGGTAGTACG TGGTGATATG ATGTCAAAAT 52924 .......... .......... .......... .......... .......... .......... 493 ATTTTATTGT AGTTGTTCGT GGTGAAATTG CTCGAATGCA GTATAAGGAT TTTCTGGAGT 52864 .......... .......... .......... .......... .......... .......... 493 CTAAACAGAA AAACGCTAAT AAAGAAAATG ATGAGCAGCT GGTGGCTGCT CTGCAGATAC 52804 .......... .......... .......... .......... .......... .......... 493 AATCAGGTAA AGTTTTTTCT TTTGGCATCT AAGGTTACGA ATTTCAAATA TGGATTTGTT 52744 .......... .......... .......... .......... .......... .......... 493 TGCCTAACTT TTCTTTTCTT GCAGCTATTC GTTGCTGGTT GGCTCATAGG CAACTTAATC 52684 .......... .......... .......... .......... .......... .......... 493 AACTGCAGAA GTCAAAAAAG TTAAATCAAG ACAGACCAAA ACCAGCCAAA AAGACTACGG 52624 .......... .......... .......... .......... .......... .......... 493 AGGTGAAGGT AATCTGTTCG GTAGATGATC ATCAATGTCT TTATGTGCAA GCTCTCTTGT 52564 .......... .......... .......... .......... .......... .......... 493 GTCAACTTCT GTTTATCTAG ATGGTCCCTA GCATGAAATA GTTTATCTTT TTACTAAAAG 52504 .......... .......... .......... .......... .......... .......... 493 CTTTTCCATA AGTTCTATTG TAACTTGTCT TCTTTCTTCA TTCAGAATTC TAGTATCTGC 52444 .......... .......... .......... .......... .......... .......... 493 TTCAGGATTA ATATCTTTAA GAATTTGGTG GCCTGTTGCG TGAAGCCAGT TTTAGGTATC 52384 .......... .......... .......... .......... .......... .......... 493 TTTTCCCCCC TTTTAGCAAA TCCAACTTTA GGTGTTCTGA TACTTTTCCT ATATGAAAAA 52324 .......... .......... .......... .......... .......... .......... 493 TAAAAAAATG TTTCTTAATG TTTTATCCTT TCTCAAGAGG ATTAAATACT TAGTCCTGAA 52264 .......... .......... .......... .......... .......... .......... 493 ATTGTTGTGT GTTTGATTCT TTAAATTAGA AGGTAAAAAG TGAGAAAAAT GTCTGTTTCA 52204 .......... .......... .......... .......... .......... .......... 493 ATGCATAGGA AGGCTCTTTT TTGGTTTAGT TGTTAATCCT ATAGTGCATC CCCTAAATCA 52144 .......... .......... .......... .......... .......... .......... 493 ATTAATTAGC AGCCAAAAAA GAAGGAAAAA GTACAGTTTG TGAAGAGTAA ATGGTGGACC 52084 .......... .......... .......... .......... .......... .......... 493 CCAAACCCCT TTCTCTACCT TATAATCCAC TCTCTTTTTA TATGTTCTAA CTGCCCGTGG 52024 .......... .......... .......... .......... .......... .......... 493 CTGTCGCGCA AAGTGGAGTC TAATTTTAGG AACTAATCTG CACACTCTGG AGGCAACAAA 51964 .......... .......... .......... .......... .......... .......... 493 GTAGCATATC TAACACTTCA CTTTGACTTT TGAGAGTAAG ATTGACTCTG TAGTAAGCCT 51904 .......... .......... .......... .......... .......... .......... 493 ATTTCTTTTA ATCTCAGCAG GACTTGCCTG CAGAAATTTT ACCTTCTGTT GTCGAAGACC 51844 .......... .......... .......... .......... .......... .......... 493 TCGAAAGGCG GGTTTTGGTG GCTGAGACAA CCCTTGAAGA GAAGGAAAAG GAAAATGCTG 51784 .......... .......... .......... .......... .......... .......... 493 CCCTAAAGGA GCAAGTGAAT CAATTGGAGT CCCGATGGTC AGATTATGAG GCCAGGATGA 51724 .......... .......... .......... .......... .......... .......... 493 GGTCGATGGA GGAGATGTGG CAAAAACAAA TGGCATCATT GCAGGTTAGT AATATCTCCA 51664 .......... .......... .......... .......... .......... .......... 493 AATCCGTGTG ATCATAGAGA AGAGAGAGTT TTTCTATTTT GTTGTGTCTT CTTACTAGTG 51604 .......... .......... .......... .......... .......... .......... 493 CTGTAGTCTA ATGATTCGGG TTTATGATAG AGAGATGTAT TAGGTCCATC AGATTCCGAT 51544 .......... .......... .......... .......... .......... .......... 493 GCAAAATCAG CCATATGAAG CTCTCTGTAG TTCCTAACCA TAATCCTGCT TTGTCAATGA 51484 .......... .......... .......... .......... .......... .......... 493 CTTGAAATCT ATTATGATAT AACGAACGTT CATCTAGTCA TGATGCTTCT TCGGCATTGA 51424 .......... .......... .......... .......... .......... .......... 493 ACAGACAAAC ATATCTCCTT AGCCCAGTGG AAGAGGCACT TGGGGCCTGG GAAGCAAACA 51364 .......... .......... .......... .......... .......... .......... 493 AATAAATCTG AGCAGAGTGT CTTATTCAGT AGTTGATATT TGGGCCGTTA ATGTTATTTT 51304 .......... .......... .......... .......... .......... .......... 493 AATTTGCTTT CGGGTGTAGA GTGTATGCAT ATGTTCTTGA TATTCCATAT TCATGAACGA 51244 .......... .......... .......... .......... .......... .......... 493 TAAATCTGCT AACGTCTTAT ACATCAAATG CTTTGCTTTG GCAGGCAAGT TTGGTTTCAG 51184 ||| | ||| |||| .......... .......... .......... .......... ....ACAAAT TTGTTTTCT. 508 CCAAGAAGAG CCTTGGTGTT GACAATTCTG CCAGTCACCC TGGAAAACTT GAAGGTTCCC 51124 .......... .......... .......... .......... .......... .......... 508 CATCTCCTTG CGGTTATGAA TCTGAAGACA CTACAACAAC TATGGGCACT CGCACTCCTG 51064 .......... .......... .......... .......... .......... .......... 508 GGGGCAGCAC TCCTATAGAA TATGCTAGCA ACGGTGTAGA TTTTGGAGGT ATTAGAGAGA 51004 .......... .......... .......... .......... .......... .......... 508 TTAATGGTGG TTTATGTGTA GTCAATTACC TTAGCAGGGA GTTTGAGCTA CGAAAACAAA 50944 .......... .......... .......... .......... .......... .......... 508 ATTTCGATGA TGAAGCCTTG GCAATTAGTC AGTTAAAGTC AGGGCAGTTA CAGTCTACTA 50884 .......... .......... .......... .......... .......... .......... 508 GTCCTGCAGA AGATTTTCGA AGACTCAGAC ACAAGTTTGA CGAATGGAAG AAAGACTACA 50824 .......... .......... .......... .......... .......... .......... 508 AGGCTCGGTT AAAGGAGACA AAGTCGAAGG TACACAAGCT TGGTTATTCA GAAGCAGAGA 50764 .......... .......... .......... .......... .......... .......... 508 AAACTCGTAG AAATTGGTGG GGTAAGAAGA GCAAAAGATA ACTACTACTT CTTCTTCGTC 50704 .......... .......... .......... .......... .......... .......... 508 GTCTTTTCTG TGTGAAAAAT GTATAGATAG AAACTCATTT TCCCAACCAT GGGTTCTTAA 50644 .......... .......... .......... .......... .......... .......... 508 GCATAGCAGA CTTAGCGGAG ACCGGGGAAC GTAGTGTGCT CCTATTCGAA AGGATCCACT 50584 .......... .......... .......... .......... .......... .......... 508 CCCTCCTTAG ATAGTTCTAG TCCTGTTTGT GATTATGTTT GTTTGTAGAC ACTATGTTAG 50524 .......... .......... .......... .......... .......... .......... 508 GTTCATGAAC ATACATGCAT AGAGTTTTGC AGAACTTGTG ATAGATCAGT TGCAGCTGCA 50464 .......... .......... .......... .......... .......... .......... 508 GAAGAGTGAT GTATTTTACA ACTCAAATGA GTATTAAAAA TTGATTGCAT TTTGCTTACT 50404 || | || ||| ||| || || ........AT TTTTTAAACA ACTAAAGTG- .......... .......... .......... 529 ATTACTAATA TATTTCTGGA TCTTCATTCA CAGCTATTTT GATTTGATGC ACTTGAGTCG 50344 |||||| |||| | .......... .......... .......... ...TTATTTT TATTTAA... .......... 543 AGGGTCTTTT CAAAATAACT TTTCCACCTT CACGAGGTAG GAGTAAGGTT CGGATATACT 50284 .......... .......... .......... .......... .......... .......... 543 CTGCCTTTCC CATATTCCAC TTCTGGAATT ACACTAAGTA TGCTGACACC TGTGCTGATG 50224 .......... .......... .......... .......... .......... .......... 543 GGACGTAGTA GGTTTCTTAT GTGGAGTAGC GAGGTGTGAA TAAGGCGGAT AAGTTTTACT 50164 .......... .......... .......... .......... .......... .......... 543 CCCTCCGTTT TAAAAAAGAA TGCCTTTTTT TGGTCTGTTT CAAAAAGAAT GACCTCTTTT 50104 .......... .......... .......... .......... .......... .......... 543 TTTTTTGTAA CATTTTAAAA TCAGTTTTTC ACGTGACATG TAAAATTTTC TTTATACTCT 50044 .......... .......... .......... .......... .......... .......... 543 TAAACTTCGT GTCACGTGAA AAACTTTCTT TATACTCTTA AACTTCGTGT CAACTCAAAC 49984 .......... .......... .......... .......... .......... .......... 543 TAGGTCATTC TTTGTGAAAC GGAGAGAGTA TATTCCATGA TTGTCGGTGA ATGTGGATCG 49924 .......... .......... .......... .......... .......... .......... 543 AACACGTGAC CTTCAGATCT TCAGTCTGAC GCTCTCCCAA CTGAGCTATC CCCGCTATAT 49864 .......... .......... .......... .......... .......... .......... 543 GTTAGCTTAT TATTCAAATT AATAAATATT TATAACTAAA CTTAAAATAA ATAAGCAAAA 49804 .......... .......... .......... .......... .......... .......... 543 ATTATGTCAT GTCACTTTGA GTTTGTAGTC CTCATTTTTT TCTAAATGAA GATTAAGACG 49744 .......... .......... .......... .......... .......... .......... 543 TCTAAATATG AATATATATT TATATATTGA GTTTTGTGAT ATTTCAAATC AGAATATTAA 49684 .......... .......... .......... .......... .......... .......... 543 ATAATTAAGA CACTTTGTTA TTCAACATCT TAATTTAGTC ATAAACATTT GGGAGTACAA 49624 .......... .......... .......... .......... .......... .......... 543 GTGTATTCTT TTTTCTTTAG TAAAGGTAGA CTAAGCGAAA AAAATCTTCT GATTCTCGTT 49564 .......... .......... .......... .......... .......... .......... 543 GAGAGTCATT CTGTGAGACG TCTAATAGTC TCTAACCTAA TAGTCTCTAA CTTGGTTTTC 49504 .......... .......... .......... .......... .......... .......... 543 GAATCCTTAA TTTCAGCCCT AAGCACAAAT AGAGATCTAC CACAAGTCTT ACTATATAAC 49444 .......... .......... .......... .......... .......... .......... 543 TGTTGACTAT CAAACACGAG CTCAAACTAA TTAAAAAAAA AG 49402 |||||||| || .......... .......... .......... ..AAAAAAAA AG 553 hqPGS_C10SLe0045H11.1-_SGN-E540167+ (53747 53515) ******************************************************************************** EST sequence 88 +strand 420 n (File: SGN-E220828+) 1 TTTTTTTTTT TTTTTTTATG ACAAGGGAAA CTCGCAGACG CTACCCTTTG GATGCACACA 61 GGGTATATCC CTCGCTCCTA TACAATAGCT CGCAAACCAC ATAGAAGAGG TAACCCGCAC 121 TAGGCAAGCC TGGTGCGACG AGCTCGACCC AGAAGGCAAA CCCCTTGCTT TTACTGGCAA 181 GGGGTTTCGA ACTTGAGACC TCCAACATGG AAGTCCCAAG CTCAAACCAC TAGGCCACCC 241 CGAAGGGTGT GTGTGTGTGT ATGTATATAT ATATATATAT ATATATATCA CTTATTAGTA 301 TGGAATTACA CTGAGTATAT TGTTAAGAGG ATCCGACAGA GGTGCAGTGG TGTTTTTGGA 361 GAGTTCGAGC AACATAGGCT GTTTTATTAG GATGGGGAAT TTGCAGAGAT ACGTAACATG Predicted gene structure (within gDNA segment 73121 to 67905): Exon 1 71260 71035 ( 226 n); cDNA 7 246 ( 240 n); score: 0.739 Intron 1 71034 70978 ( 57 n); Pd: 0.999 (s: 0.86), Pa: 0.000 (s: 0.60) Exon 2 70977 70930 ( 48 n); cDNA 247 293 ( 47 n); score: 0.604 Intron 2 70929 69678 (1252 n); Pd: 0.950 (s: 0.60), Pa: 0.000 (s: 0) Exon 3 69677 69654 ( 24 n); cDNA 294 317 ( 24 n); score: 0.750 MATCH C10SLe0045H11.1- SGN-E220828+ 0.739 298 0.710 C PGS_C10SLe0045H11.1-_SGN-E220828+ (71260 71035,70977 70930,69677 69654) Alignment (genomic DNA sequence = upper lines): TTATTTTTTT TATGACAAGG AAAACCCGTA GCCGCTACCC TATGGGTGCG CAGAGGGTAA 71201 || ||||||| |||||||||| |||| || | | |||||||| | ||| ||| || |||||| TTTTTTTTTT TATGACAAGG GAAACTCGCA GACGCTACCC TTTGGATGCA CACAGGGTAT 66 AACCCCCACT CCTATGCAAT AGCTCGCAAA CCACATAGGA GAGGTAACCC GCAC----C- 71146 | ||| | || ||||| |||| |||||||||| |||||||| | |||||||||| |||| | ATCCCTCGCT CCTATACAAT AGCTCGCAAA CCACATAGAA GAGGTAACCC GCACTAGGCA 126 A-----G-GC --CGAGCTCG ACCCAGAAGG CAAACCCCTT GCTTTCGC-G GCAAGGGGTT 71095 | | || |||||||| |||||||||| |||||||||| ||||| | | |||||||||| AGCCTGGTGC GACGAGCTCG ACCCAGAAGG CAAACCCCTT GCTTTTACTG GCAAGGGGTT 186 TCGAACTTGA GACCTCCAAT AAGGAAGTCC CAAGCTCAAA TCACTGGTCC ACCTTGAAGG 71035 |||||||||| ||||||||| | |||||||| |||||||||| |||| | || ||| ||||| TCGAACTTGA GACCTCCAAC ATGGAAGTCC CAAGCTCAAA CCACTAGGCC ACCCCGAAGG 246 GTAATCTTTT ATTTTGTTTA ATGCATTTTA AATATATTAT TAATACATAT CAAGCAAATT 70975 | .......... .......... .......... .......... .......... .......GTG 249 TTTAAGAGTT TAATGATAAA AAAAAACATA TCTAAACTAT CTCTTGCGAG TTTCATACCT 70915 | | | || || ||| | | | | ||| | || | ||| | ||| TGTGTGTGTG TATGTATATA TATATATATA TATATA-TAT CACTT..... .......... 293 CAACTTTCCA TTATTCAAAT TTACCTACCT AAACTATCAC CTTTTGACGA GTTCATACGA 70855 .......... .......... .......... .......... .......... .......... 293 CAACTATCAC TCCATTTGTA TTAAAATTCA AAACACACCT CGACTCCAAG GTGTATAGGC 70795 .......... .......... .......... .......... .......... .......... 293 CAACTCACCA TCGACATGTG TTTTGATACA AATGTATTGA TAGTTTAGGC AGGTAAAGAG 70735 .......... .......... .......... .......... .......... .......... 293 AACAACGAAT AGTTTAGATA TGAAACTCGC ACTCCATTTT TATTAAAACA CATCTCGATT 70675 .......... .......... .......... .......... .......... .......... 293 CTAAGTTGGC CTACACACCT TATAATCAAG GTGTGTTTAA AATTTTAATA CAAATGAAGT 70615 .......... .......... .......... .......... .......... .......... 293 GATAACTCAC GTATGAACTC GTCAAAAGGT GATACTTTGG ACCAATAAAG AGAACAATGG 70555 .......... .......... .......... .......... .......... .......... 293 ATAGTTGAGA CATGAAACTC GCACTCCATT TCTATTAAAA CACATCTCGA TGCTGAGTTG 70495 .......... .......... .......... .......... .......... .......... 293 GCCTACACAC CTTAGAATCA AGGTGTGTTT CAAATTTCAA TACAAATGGA GTGATAACTA 70435 .......... .......... .......... .......... .......... .......... 293 ACATATGAAC TCGTGAAAAG GTGATAGTTT GGGCCGGTAA AGAGAACAAT GGATAATTGA 70375 .......... .......... .......... .......... .......... .......... 293 GATATGAAAC TCGCAATCCA TTACTATTAA AACACATCTC GATGTTGAGT TGGCCTACAC 70315 .......... .......... .......... .......... .......... .......... 293 ACCTTAGAAT CAAGGTGCGT TTCAAATTTT AATACATATG GAGTGATAAT TGACATATGA 70255 .......... .......... .......... .......... .......... .......... 293 ACTCGTCAAA AGGTGATAGT TTCGGCTGGT AAAGAAAACA ATGGATAGTT GAGATATGAA 70195 .......... .......... .......... .......... .......... .......... 293 ACTCGCACTC CATTTCTATT AAAACACATC AGTTGGCCCC CACACCTTAG AATCAAGGTG 70135 .......... .......... .......... .......... .......... .......... 293 AGTTTCAAAA TTTTCTTAAT ACAAATGGAG TGATAATTAT CGTACGAACT CGTGAAAAGG 70075 .......... .......... .......... .......... .......... .......... 293 TGATAGTTTA GACAGGTAAA AGAAAACAAC GGATAGTTGA GATATGAAAC TCGCTAAAAT 70015 .......... .......... .......... .......... .......... .......... 293 TGATCGTGTA GGTATGTTTT CTACCACTTA TAAACTATTT GGGGTCATTT GTAAAAGTTA 69955 .......... .......... .......... .......... .......... .......... 293 AAAAAAAAAA AAAAACTTAC GCGCAACGAT GACAAAGCTG TGCGAATTTG CCACTACGAA 69895 .......... .......... .......... .......... .......... .......... 293 GGCGCCAGCC ATTTCTGAAG GTAACTGAGT TTGATGAATC TTCACATTGA AAGCAGAAAG 69835 .......... .......... .......... .......... .......... .......... 293 TTGTTGTCGA AGAAGAAGGA GAAGCCATAG ATAGAGAAGA AGAAGAAGAA AAAACGAAAC 69775 .......... .......... .......... .......... .......... .......... 293 CCTAAAAACA GAGCAAAGAC AAAATTTTCA GAATGGAAAC TGATTAGTAT TCAAAAAAAA 69715 .......... .......... .......... .......... .......... .......... 293 AAAGTGTGTG ATTAACATTT ATAACAGAAA CAGAGAGATA ATTATGTAAT TACTTTGATT 69655 || | |||| ||| ||| ||| | .......... .......... .......... .......ATT AGTATGGAAT TACACTGAGT 316 A 69654 | A 317 hqPGS_C10SLe0045H11.1-_SGN-E220828+ (71260 71035,70977 70930,69677 69654) ******************************************************************************** EST sequence 89 +strand 475 n (File: SGN-E220902+) 1 TTTTTTTTTT TTTTTTTATG ACAAGGGAAA CTCGCAGACG CTACCCTTTG GATGCACACA 61 GGGTATATCC CTCGCTCCTA TACAATAGCT CGCAAACCAC ATAGAAGAGG TAACCCGCAC 121 TAGGCAAGCC TGGTGCGACG AGCTCGACCC AGAAGGCAAA CCCCTTGCTT TTACTGGCAA 181 GGGGTTTCGA ACTTGAGACC TCCAACATGG AAGTCCCAAG CTCAAACCAC TAGGCCACCC 241 CGAAGGGTGT GTGTGTGTGT ATGTATATAT ATATATATAT ATATATATCA CTTATTAGTA 301 TGGAATTACA CTGAGTATAT TGTTAAGAGG ATCCGACAGA GGTGCAGTGG TGTTTTTGGA 361 GAGTTCGAGC AACATAGGCT GTTTTATTAG GATGGGGAAT TTGCAGAGAT ACGTAACATG 421 ATATATAAAT TAAGGTATTG TGGGACAAAT AGAAATAGGA CTAGACGGAA TTATT Predicted gene structure (within gDNA segment 73121 to 67955): Exon 1 71260 71035 ( 226 n); cDNA 7 246 ( 240 n); score: 0.739 Intron 1 71034 70978 ( 57 n); Pd: 0.999 (s: 0.86), Pa: 0.000 (s: 0.60) Exon 2 70977 70930 ( 48 n); cDNA 247 293 ( 47 n); score: 0.604 Intron 2 70929 69678 (1252 n); Pd: 0.950 (s: 0.60), Pa: 0.000 (s: 0) Exon 3 69677 69654 ( 24 n); cDNA 294 317 ( 24 n); score: 0.750 MATCH C10SLe0045H11.1- SGN-E220902+ 0.739 298 0.627 C PGS_C10SLe0045H11.1-_SGN-E220902+ (71260 71035,70977 70930,69677 69654) Alignment (genomic DNA sequence = upper lines): TTATTTTTTT TATGACAAGG AAAACCCGTA GCCGCTACCC TATGGGTGCG CAGAGGGTAA 71201 || ||||||| |||||||||| |||| || | | |||||||| | ||| ||| || |||||| TTTTTTTTTT TATGACAAGG GAAACTCGCA GACGCTACCC TTTGGATGCA CACAGGGTAT 66 AACCCCCACT CCTATGCAAT AGCTCGCAAA CCACATAGGA GAGGTAACCC GCAC----C- 71146 | ||| | || ||||| |||| |||||||||| |||||||| | |||||||||| |||| | ATCCCTCGCT CCTATACAAT AGCTCGCAAA CCACATAGAA GAGGTAACCC GCACTAGGCA 126 A-----G-GC --CGAGCTCG ACCCAGAAGG CAAACCCCTT GCTTTCGC-G GCAAGGGGTT 71095 | | || |||||||| |||||||||| |||||||||| ||||| | | |||||||||| AGCCTGGTGC GACGAGCTCG ACCCAGAAGG CAAACCCCTT GCTTTTACTG GCAAGGGGTT 186 TCGAACTTGA GACCTCCAAT AAGGAAGTCC CAAGCTCAAA TCACTGGTCC ACCTTGAAGG 71035 |||||||||| ||||||||| | |||||||| |||||||||| |||| | || ||| ||||| TCGAACTTGA GACCTCCAAC ATGGAAGTCC CAAGCTCAAA CCACTAGGCC ACCCCGAAGG 246 GTAATCTTTT ATTTTGTTTA ATGCATTTTA AATATATTAT TAATACATAT CAAGCAAATT 70975 | .......... .......... .......... .......... .......... .......GTG 249 TTTAAGAGTT TAATGATAAA AAAAAACATA TCTAAACTAT CTCTTGCGAG TTTCATACCT 70915 | | | || || ||| | | | | ||| | || | ||| | ||| TGTGTGTGTG TATGTATATA TATATATATA TATATA-TAT CACTT..... .......... 293 CAACTTTCCA TTATTCAAAT TTACCTACCT AAACTATCAC CTTTTGACGA GTTCATACGA 70855 .......... .......... .......... .......... .......... .......... 293 CAACTATCAC TCCATTTGTA TTAAAATTCA AAACACACCT CGACTCCAAG GTGTATAGGC 70795 .......... .......... .......... .......... .......... .......... 293 CAACTCACCA TCGACATGTG TTTTGATACA AATGTATTGA TAGTTTAGGC AGGTAAAGAG 70735 .......... .......... .......... .......... .......... .......... 293 AACAACGAAT AGTTTAGATA TGAAACTCGC ACTCCATTTT TATTAAAACA CATCTCGATT 70675 .......... .......... .......... .......... .......... .......... 293 CTAAGTTGGC CTACACACCT TATAATCAAG GTGTGTTTAA AATTTTAATA CAAATGAAGT 70615 .......... .......... .......... .......... .......... .......... 293 GATAACTCAC GTATGAACTC GTCAAAAGGT GATACTTTGG ACCAATAAAG AGAACAATGG 70555 .......... .......... .......... .......... .......... .......... 293 ATAGTTGAGA CATGAAACTC GCACTCCATT TCTATTAAAA CACATCTCGA TGCTGAGTTG 70495 .......... .......... .......... .......... .......... .......... 293 GCCTACACAC CTTAGAATCA AGGTGTGTTT CAAATTTCAA TACAAATGGA GTGATAACTA 70435 .......... .......... .......... .......... .......... .......... 293 ACATATGAAC TCGTGAAAAG GTGATAGTTT GGGCCGGTAA AGAGAACAAT GGATAATTGA 70375 .......... .......... .......... .......... .......... .......... 293 GATATGAAAC TCGCAATCCA TTACTATTAA AACACATCTC GATGTTGAGT TGGCCTACAC 70315 .......... .......... .......... .......... .......... .......... 293 ACCTTAGAAT CAAGGTGCGT TTCAAATTTT AATACATATG GAGTGATAAT TGACATATGA 70255 .......... .......... .......... .......... .......... .......... 293 ACTCGTCAAA AGGTGATAGT TTCGGCTGGT AAAGAAAACA ATGGATAGTT GAGATATGAA 70195 .......... .......... .......... .......... .......... .......... 293 ACTCGCACTC CATTTCTATT AAAACACATC AGTTGGCCCC CACACCTTAG AATCAAGGTG 70135 .......... .......... .......... .......... .......... .......... 293 AGTTTCAAAA TTTTCTTAAT ACAAATGGAG TGATAATTAT CGTACGAACT CGTGAAAAGG 70075 .......... .......... .......... .......... .......... .......... 293 TGATAGTTTA GACAGGTAAA AGAAAACAAC GGATAGTTGA GATATGAAAC TCGCTAAAAT 70015 .......... .......... .......... .......... .......... .......... 293 TGATCGTGTA GGTATGTTTT CTACCACTTA TAAACTATTT GGGGTCATTT GTAAAAGTTA 69955 .......... .......... .......... .......... .......... .......... 293 AAAAAAAAAA AAAAACTTAC GCGCAACGAT GACAAAGCTG TGCGAATTTG CCACTACGAA 69895 .......... .......... .......... .......... .......... .......... 293 GGCGCCAGCC ATTTCTGAAG GTAACTGAGT TTGATGAATC TTCACATTGA AAGCAGAAAG 69835 .......... .......... .......... .......... .......... .......... 293 TTGTTGTCGA AGAAGAAGGA GAAGCCATAG ATAGAGAAGA AGAAGAAGAA AAAACGAAAC 69775 .......... .......... .......... .......... .......... .......... 293 CCTAAAAACA GAGCAAAGAC AAAATTTTCA GAATGGAAAC TGATTAGTAT TCAAAAAAAA 69715 .......... .......... .......... .......... .......... .......... 293 AAAGTGTGTG ATTAACATTT ATAACAGAAA CAGAGAGATA ATTATGTAAT TACTTTGATT 69655 || | |||| ||| ||| ||| | .......... .......... .......... .......ATT AGTATGGAAT TACACTGAGT 316 A 69654 | A 317 hqPGS_C10SLe0045H11.1-_SGN-E220902+ (71260 71035,70977 70930,69677 69654) ******************************************************************************** EST sequence 137 +strand 661 n (File: SGN-E322543+) 1 TCTCCTTCAA ATCTAACCTC TGAACTGTAA AATGAGAACA TTCTCTTAGC TTTTTTTTTT 61 CCTTTTTTGA CGACAAGGGA AACCCGCAGC CGCTACCCTT TGGATGCGCA CAGAGTAAAA 121 TCCCTGCTCC TATGCAATAG CTCGCAAACC ACATAGGAGA GGTAACCCGC ACTAGGCAAG 181 CTTGGTGCGA CGAGCTCGAT CAAAAGGCAA ACCCCTTGCT TTCACTGGCA AGGGGTTTCG 241 AACTTGAGAC CTCCTACATG GAAGTCCCAA GCTCAAACCA CTGGGCCACC CCGAAGGGTA 301 ACATTCTCTT AGCTTTATAT AAATGAAGCT GTCTTGAGGG CATGTTCTGA ACCACCTCCA 361 TCCGTAACTT CACAAGTTGA TGCTGGACAA GTAAGTAATG TGCAGTTAAA AACCGGTAAG 421 AGTTAGTTCT GAAAAGGGTG ACCGAGTATG AAGAGGCAAA ATAGAATACG CGTGACAGCT 481 GCTTGCAAGG TTAACGACAT TAATGGACTA CTCCTCAATT TAACTTTACC TGTTAGCGTT 541 ATGTTAGTAT CTGGTAAAGT GATTTGAATG TCTCACTTTC ACATCGTTAC TCTAGATCAT 601 GCATGTTATA ACTGATACNA CTATCTCCTT CATCTTTGGT GGATCCAGTA TACTTTTTCT 661 T Predicted gene structure (within gDNA segment 73052 to 66005): Exon 1 71239 71035 ( 205 n); cDNA 80 297 ( 218 n); score: 0.744 Intron 1 71034 68961 (2074 n); Pd: 0.999 (s: 0.86), Pa: 0.728 (s: 0) Exon 2 68960 68945 ( 16 n); cDNA 298 313 ( 16 n); score: 0.688 MATCH C10SLe0045H11.1- SGN-E322543+ 0.744 221 0.334 C PGS_C10SLe0045H11.1-_SGN-E322543+ (71239 71035,68960 68945) Alignment (genomic DNA sequence = upper lines): AAACCCGTAG CCGCTACCCT ATGGGTGCGC AGAGGGTAAA ACCCCCACTC CTATGCAATA 71180 ||||||| || |||||||||| ||| ||||| | || ||||| | ||| ||| |||||||||| AAACCCGCAG CCGCTACCCT TTGGATGCGC ACAGAGTAAA ATCCCTGCTC CTATGCAATA 139 GCTCGCAAAC CACATAGGAG AGGTAACCCG CACCAGGC-- -C---GAGC- TCGA-C-C-- 71131 |||||||||| |||||||||| |||||||||| ||| |||| | | || ||| | | GCTCGCAAAC CACATAGGAG AGGTAACCCG CACTAGGCAA GCTTGGTGCG ACGAGCTCGA 199 -CAGAAGGCA AACCCCTTGC TTTCGC-GGC AAGGGGTTTC GAACTTGAGA CCTCCAATAA 71073 || |||||| |||||||||| |||| | ||| |||||||||| |||||||||| ||||| | | TCAAAAGGCA AACCCCTTGC TTTCACTGGC AAGGGGTTTC GAACTTGAGA CCTCCTACAT 259 GGAAGTCCCA AGCTCAAATC ACTGGTCCAC CTTGAAGGGT AATCTTTTAT TTTGTTTAAT 71013 |||||||||| |||||||| | ||||| |||| | ||||| GGAAGTCCCA AGCTCAAACC ACTGGGCCAC CCCGAAGG.. .......... .......... 297 GCATTTTAAA TATATTATTA ATACATATCA AGCAAATTTT TAAGAGTTTA ATGATAAAAA 70953 .......... .......... .......... .......... .......... .......... 297 AAAACATATC TAAACTATCT CTTGCGAGTT TCATACCTCA ACTTTCCATT ATTCAAATTT 70893 .......... .......... .......... .......... .......... .......... 297 ACCTACCTAA ACTATCACCT TTTGACGAGT TCATACGACA ACTATCACTC CATTTGTATT 70833 .......... .......... .......... .......... .......... .......... 297 AAAATTCAAA ACACACCTCG ACTCCAAGGT GTATAGGCCA ACTCACCATC GACATGTGTT 70773 .......... .......... .......... .......... .......... .......... 297 TTGATACAAA TGTATTGATA GTTTAGGCAG GTAAAGAGAA CAACGAATAG TTTAGATATG 70713 .......... .......... .......... .......... .......... .......... 297 AAACTCGCAC TCCATTTTTA TTAAAACACA TCTCGATTCT AAGTTGGCCT ACACACCTTA 70653 .......... .......... .......... .......... .......... .......... 297 TAATCAAGGT GTGTTTAAAA TTTTAATACA AATGAAGTGA TAACTCACGT ATGAACTCGT 70593 .......... .......... .......... .......... .......... .......... 297 CAAAAGGTGA TACTTTGGAC CAATAAAGAG AACAATGGAT AGTTGAGACA TGAAACTCGC 70533 .......... .......... .......... .......... .......... .......... 297 ACTCCATTTC TATTAAAACA CATCTCGATG CTGAGTTGGC CTACACACCT TAGAATCAAG 70473 .......... .......... .......... .......... .......... .......... 297 GTGTGTTTCA AATTTCAATA CAAATGGAGT GATAACTAAC ATATGAACTC GTGAAAAGGT 70413 .......... .......... .......... .......... .......... .......... 297 GATAGTTTGG GCCGGTAAAG AGAACAATGG ATAATTGAGA TATGAAACTC GCAATCCATT 70353 .......... .......... .......... .......... .......... .......... 297 ACTATTAAAA CACATCTCGA TGTTGAGTTG GCCTACACAC CTTAGAATCA AGGTGCGTTT 70293 .......... .......... .......... .......... .......... .......... 297 CAAATTTTAA TACATATGGA GTGATAATTG ACATATGAAC TCGTCAAAAG GTGATAGTTT 70233 .......... .......... .......... .......... .......... .......... 297 CGGCTGGTAA AGAAAACAAT GGATAGTTGA GATATGAAAC TCGCACTCCA TTTCTATTAA 70173 .......... .......... .......... .......... .......... .......... 297 AACACATCAG TTGGCCCCCA CACCTTAGAA TCAAGGTGAG TTTCAAAATT TTCTTAATAC 70113 .......... .......... .......... .......... .......... .......... 297 AAATGGAGTG ATAATTATCG TACGAACTCG TGAAAAGGTG ATAGTTTAGA CAGGTAAAAG 70053 .......... .......... .......... .......... .......... .......... 297 AAAACAACGG ATAGTTGAGA TATGAAACTC GCTAAAATTG ATCGTGTAGG TATGTTTTCT 69993 .......... .......... .......... .......... .......... .......... 297 ACCACTTATA AACTATTTGG GGTCATTTGT AAAAGTTAAA AAAAAAAAAA AAACTTACGC 69933 .......... .......... .......... .......... .......... .......... 297 GCAACGATGA CAAAGCTGTG CGAATTTGCC ACTACGAAGG CGCCAGCCAT TTCTGAAGGT 69873 .......... .......... .......... .......... .......... .......... 297 AACTGAGTTT GATGAATCTT CACATTGAAA GCAGAAAGTT GTTGTCGAAG AAGAAGGAGA 69813 .......... .......... .......... .......... .......... .......... 297 AGCCATAGAT AGAGAAGAAG AAGAAGAAAA AACGAAACCC TAAAAACAGA GCAAAGACAA 69753 .......... .......... .......... .......... .......... .......... 297 AATTTTCAGA ATGGAAACTG ATTAGTATTC AAAAAAAAAA AGTGTGTGAT TAACATTTAT 69693 .......... .......... .......... .......... .......... .......... 297 AACAGAAACA GAGAGATAAT TATGTAATTA CTTTGATTAA TTTTTTCTCT CAAATAAGGA 69633 .......... .......... .......... .......... .......... .......... 297 AATTAGCAGT TAAACAAGAT TAATTGTTAT TTTTTTTAAA CCATAAATAC AAAATTGGAA 69573 .......... .......... .......... .......... .......... .......... 297 ATGAAGAATT TAGTCTAATT TGGTAGGTTG ATGAAAGGGC ATACATTGGA TTTTGGGAAC 69513 .......... .......... .......... .......... .......... .......... 297 ATTTAAGACA TATTAGACCA ATATGGCTTG TTTTGCGACC AGAAAGTTTT GAGTTCGAGT 69453 .......... .......... .......... .......... .......... .......... 297 CTTTCGAGAA CAGTAATTTT TATGTTAGGA ATATTTTGAT AAGTATTATT TCATCTTTAC 69393 .......... .......... .......... .......... .......... .......... 297 TCAAAAGATT TAAGTTCGAG TCTTTTGGAT ATGGAATTAC TTCTATTAGA GAGCGTCAAG 69333 .......... .......... .......... .......... .......... .......... 297 TCAGCAATGT TGAAACTTCC CGCGCAATTT TAAATTTGAT TGGATTTCAA TGTGAAAACT 69273 .......... .......... .......... .......... .......... .......... 297 GGTGAGGTGA GAAACCAAAA GATAAAAACT TAGAAATAAA CCTTGCAATG TCTAAATCTT 69213 .......... .......... .......... .......... .......... .......... 297 ATTTTGATTG AACTTTAGTA TAGATATTAA ATATCGAGAC GAAAAATAAA AAAATATCAT 69153 .......... .......... .......... .......... .......... .......... 297 ATTAAAAATG TATACAAATT CGTAATTTAC CTATTTAGAA ACAACTCAAT TTTATCTAAA 69093 .......... .......... .......... .......... .......... .......... 297 TGTGGCTCAA TTAGTGAATT TTGCTCACAC TTCAGTTATT TTTGTCTAAA CTTTGACTAG 69033 .......... .......... .......... .......... .......... .......... 297 TTTTTTGAAT TTTTTGTGCA TGTATAATTG ACATTGAGTC ATTTTTATAT GAATAAATCA 68973 .......... .......... .......... .......... .......... .......... 297 TAATAATAAT AGGGAATTAT CTCCTAGC 68945 | || | ||| |||| .......... ..GTAACATT CTCTTAGC 313 hqPGS_C10SLe0045H11.1-_SGN-E322543+ (71239 71035) ******************************************************************************** EST sequence 24 -strand 717 n (File: SGN-E380042-) 1 CGAAAAATAT CAAGACTAAT TTTACAACAC AAGTAATCGG GAACCTCAGT GGAGTATCNA 61 TCTGCTGCAG CTTTCACGAA AACCTTACCT AGAGCTTTCA GTTGCTTAAA AAGCGCCGTT 121 GATTTTTCAT CTTTGAACCC TTCTGTCTGA GAACTGTCAA GCATATGTCT CTCCTTGAGA 181 GCTGACTCAC ATGATTCTTT CAAGTTCTGA AGCTCCCAGG AGCGCCTTGT AGATTCATGC 241 TCCCACTCCA TGTACTTTGC TTTAGCAAGC TCTTCCCAGA TCTCTCCAAC AATATATCTT 301 CCTGGATTCA CACCTCTTCC AAGGTCTAAT GCCTGACAGG ATACATAGAA GAGAACTGTA 361 TCATCATAAT TTATTTATTT TTATGACAAG GGAAACCCGC AGCCGCTACC CTTTGTATGC 421 GCACAGGGTA GAACCCCCAC TCCTATGCAA TAACTCGCAA ACCACATAGG AGAGGTAACC 481 ACATAGGAGA GGTAACCGCA CTAGACAAGC CTGGAGCGAC AAGCTCGACC CAAAAGGCAA 541 ACCCCTTGCT TTCCCTGGCA AGGAGTTTCG AACTTGAGAC CTCCCGCATG GAAAATCCAA 601 ACTCAAACCA CTGGGCCACC CCGAAGGGTT CATCATAATT AAGCAGAGCA AACTTCCCTA 661 AAATCATCAT TTCAACTAAA ATAATTCAGC ATATCATCAA AAGAAAAAAT GATCGTT Predicted gene structure (within gDNA segment 76120 to 69148): Exon 1 74715 74697 ( 19 n); cDNA 325 343 ( 19 n); score: 0.526 Intron 1 74696 72383 (2314 n); Pd: 0.857 (s: 0), Pa: 0.984 (s: 0) Exon 2 72382 72370 ( 13 n); cDNA 344 356 ( 13 n); score: 0.538 Intron 2 72369 71275 (1095 n); Pd: 0.901 (s: 0), Pa: 0.000 (s: 0.77) Exon 3 71274 71151 ( 124 n); cDNA 357 481 ( 125 n); score: 0.851 Intron 3 71150 70752 ( 399 n); Pd: 0.000 (s: 0.96), Pa: 0.554 (s: 0) Exon 4 70751 70746 ( 6 n); cDNA 482 487 ( 6 n); score: 0.667 PPA cDNA 699 709 MATCH C10SLe0045H11.1- SGN-E380042- 0.851 162 0.226 C PGS_C10SLe0045H11.1-_SGN-E380042- (74715 74697,72382 72370,71274 71151,70751 70746) Alignment (genomic DNA sequence = upper lines): TCCATTGACC ACGAAGAAAG TACTCAAAAA TTTAAATGGA TAGATTACTT CAATTACCTA 74656 || | || | | || | TCTAATGCCT GACAGGATA. .......... .......... .......... .......... 343 CATCACCTGC TTGCCACTTC TTCGAGACCA TGTAATCTCT AAGTCCTTCC AGCACATACA 74596 .......... .......... .......... .......... .......... .......... 343 TTTTACTCCT TGAATTAGGC CAAAACCGGA AGTGAAAATT CCATTCCTTG CCGTCGGTAT 74536 .......... .......... .......... .......... .......... .......... 343 CCAGTATATT AATGGGGATC TTGTGTGGCC CAGAAAGTGG AGGAAAGTAA GCCTACAAAC 74476 .......... .......... .......... .......... .......... .......... 343 AGGAGAGCTT AGAACAACAA CAACAACTAC AACAACATAC TCAGTGAAAC CCCACAAGTG 74416 .......... .......... .......... .......... .......... .......... 343 AGGTCTGAGA AGGGTAGTGT ACACCGACCT TACCCTACCT CATGGAGGTA GAGAGGTTTT 74356 .......... .......... .......... .......... .......... .......... 343 GTTTCCTAAG GAGCCTCAAC GCAAGTGCAG AAAATAAAAG TAGTTATGAA AAGGGAATGT 74296 .......... .......... .......... .......... .......... .......... 343 GAAAGTGAAA AATTGGCAAG AGAAACTTGC TGAAATAAAA GATGTCGCAG GAATCAAAAA 74236 .......... .......... .......... .......... .......... .......... 343 TATAAAAAAC AGTGGATATT CACATTTACC CCAAAACACA TCTTGCTAAA GAAGGCATGA 74176 .......... .......... .......... .......... .......... .......... 343 AATTCCAGGA AAAATAGAAA CTCACCTCAG CACACTTTTT GGGAATCACA AGACGTGATA 74116 .......... .......... .......... .......... .......... .......... 343 ATGTGAGATC AGCATCAGTG GCAGTCAACG ATTTTTGAAA CAAAGGGGTG ACACCATGCC 74056 .......... .......... .......... .......... .......... .......... 343 CACAGCTAAG GTATGTCAAG GAGCACAAGA ATATCAATCG TTAAATTCAA AGTGCGACCA 73996 .......... .......... .......... .......... .......... .......... 343 TGAAGAGAGA TCTTGTTGTC AACCAAGTCG CATCTTTATG ATTCAAAATC TCAGTCATCA 73936 .......... .......... .......... .......... .......... .......... 343 AGTGCAGTTA ATTTTTTTAA AACAATTACA ACCACTGAAT GAATTAGAAT AACAAAGTCT 73876 .......... .......... .......... .......... .......... .......... 343 CAATACGATT AATGACAATT CACCACTAGT CCATCCACTT TCACATCTAA CCACCACCAT 73816 .......... .......... .......... .......... .......... .......... 343 CATCAACGAC CACCACCACC GGCAATCACC ACAGTCAGTC ATCACCACCA ATCACCATTA 73756 .......... .......... .......... .......... .......... .......... 343 CCACAACAGT CATCAAACAC TTTTAACAAG CATCACCATT ATATATTGTC AATCACACTA 73696 .......... .......... .......... .......... .......... .......... 343 TTAGTACTGC CACAATTAGT TGTCGTTATC ATCCACCGTG ATTATAAGCC TCCACCACCA 73636 .......... .......... .......... .......... .......... .......... 343 TCAACCACCA CTACTAAACA GCATTGTTAG CCACCACCCA CAACCATCAC CATTAGCGAA 73576 .......... .......... .......... .......... .......... .......... 343 CACCACCCTC TGTCGACACA CACAACCACC ACCATTAGCC ATAACACCAC CACCCACCAT 73516 .......... .......... .......... .......... .......... .......... 343 ATAATTTTTT TGAAGAATAT TTTGTTGATA TAGTATCTTA TTTGAGTTTC ATATTTATTA 73456 .......... .......... .......... .......... .......... .......... 343 ATTTATAAAT AAAGATAGGT TCTATACATT AAGATGTTGA GGAAACAAAT AACCGTAATT 73396 .......... .......... .......... .......... .......... .......... 343 ATATGGTATT CAAATCCTAA TACAACATTT TAATATTCAG ATATGTATTC AAATTTACAT 73336 .......... .......... .......... .......... .......... .......... 343 GTTATAATCT AAATATACGT GTTTTAATAT TCAAATATTC AATAAAATTC AGACGTTTTA 73276 .......... .......... .......... .......... .......... .......... 343 CTCTAAATAA AACAATTAGG TTCTTATTCA TCTCCATCTC CAAGAACTAA AAATGAGAGC 73216 .......... .......... .......... .......... .......... .......... 343 AAACTTTATT TGTTTACATA CCACTTATTT TATTTGCTTA AAAAATGGCT TCAGTGCTCT 73156 .......... .......... .......... .......... .......... .......... 343 CCCTTTGTAG TTTTCGGAGG CCAAGATGAC TGAGTATACA ACAAAGGATA TTTTATGGAG 73096 .......... .......... .......... .......... .......... .......... 343 ATCTTCTGCA ATTTTGACTC TGTGACACGA GGCCTGTACT GAGATTCTAT CATGGTTTGT 73036 .......... .......... .......... .......... .......... .......... 343 GTGGCATCCA GCTGAGATTT TTCAGTTGGT ACTGGAGTTT CATGGGACAA GCAGCGATTC 72976 .......... .......... .......... .......... .......... .......... 343 CGTGCCTGCA TTAAATAAAA CTAGAACTTC ATAGCATTGA TCTCCTTGAC CTCAATAGGA 72916 .......... .......... .......... .......... .......... .......... 343 ATGGCAATAG GATGAAGAAC ATTTTGAAGC ATACCCTGAT AGTTATAACC TAAAAGAGTT 72856 .......... .......... .......... .......... .......... .......... 343 GACCTTGCAA AGTTGAAAGT TTGGAAAGTA GGGAGAAGAG TTGCGACAAA CATAGTTCAA 72796 .......... .......... .......... .......... .......... .......... 343 AGTAGACTAG AAGTTACTAT ATGTCTAGAA GTCAATATTT GAAAGATCCA AGAGTAAACT 72736 .......... .......... .......... .......... .......... .......... 343 GGAACTGGTG TAAGAGCAGC TCTGTTTAGC TAGATTTCAC CCATACTAGT TTTCAATGGA 72676 .......... .......... .......... .......... .......... .......... 343 TCTTACCAAT TGCAACAGGC CAAAAGTCAG TTATGACTGA ACCCCAGAGC TTCCATTACT 72616 .......... .......... .......... .......... .......... .......... 343 CTGAGAACTT CAACAAGATT CAGCAAAGAA ATAATGAAAC ATCTTCTACA TATCAGCCAT 72556 .......... .......... .......... .......... .......... .......... 343 AAACTAAACT TGTGTTGCAT ATAGTACAAA TAGGATGGAG GAATATGAAG CTGAATTCTC 72496 .......... .......... .......... .......... .......... .......... 343 AAGAATCACT TTAAGTGAAG GTGTTAATGA CCAACTCAAG AGATAGCCTT GTAATTAGGA 72436 .......... .......... .......... .......... .......... .......... 343 ACAGATTTTC TTGGAGGAAA ACATGTGCTG TGAATTGTGA TCACATATTT CAGGTTAGAA 72376 ||||| .......... .......... .......... .......... .......... ...CATAGAA 350 AGGATGGCAC TTATCTAAGA AGCAGCCATC ATGGTTAATG CTCTTACACT CAGTTGGAAA 72316 || GAGAAC.... .......... .......... .......... .......... .......... 356 TAGTCCATCA TAAGTGGATT TTGGTGGGAG CAGGCATTCA ATGTTGCATT TTCTATTATA 72256 .......... .......... .......... .......... .......... .......... 356 GATGGTGGAT TGTGAAAACG ATGGATTCTG CTATGCAGGT CAATTGGTCA TCAGATGAAG 72196 .......... .......... .......... .......... .......... .......... 356 GCATACTAAA CTGTTCTAGT TGGCATTGTA AGCTGGAAAG AAAGTGAGAG AGAGAGATGG 72136 .......... .......... .......... .......... .......... .......... 356 TCGATAAATA TTGACAAATG ATCTGGAGGG AGTAACAACG AGTTAACTAC AAATTAAAAA 72076 .......... .......... .......... .......... .......... .......... 356 TGCCTAAAAT ATTCTTACAA GAATGAAGTT CTTCTTTGAG CAGTCCATGC ACATAATTCC 72016 .......... .......... .......... .......... .......... .......... 356 ACCAAAATCC AACAGCAGAT ATGAGTTGAA AGACACAATA CATCCACAAT GGATCAACTG 71956 .......... .......... .......... .......... .......... .......... 356 CAATGAAAAA ATATCACTGC TAAGAAATGC TTCTCACAGA GCATACAATA TACAAATGAA 71896 .......... .......... .......... .......... .......... .......... 356 CAAAACCCTT CATTCATAGA CATATCTATC TTTGTATCTA CACAACTATG ACTGATACCT 71836 .......... .......... .......... .......... .......... .......... 356 TTTCCACTAA CCTTCCCACA AGATTCACAA TCTCTCCAGC CATCGTCACT TGGATGGAAA 71776 .......... .......... .......... .......... .......... .......... 356 ATCTCACAGA ACCTCCCGTA CTCATATACA GAACTAAAGG AAAATAAGAA GTAATCAGGC 71716 .......... .......... .......... .......... .......... .......... 356 CAATGAAACT CTCATGTATC AGAAGAAAGA TTGCATTTAT TAATAGCCCT GCAAGCCTCA 71656 .......... .......... .......... .......... .......... .......... 356 ACATGTTACA GCACATTAAG CCAAGTAACG GGGAGAACTG GAATCTCTTC ATCGCACTCA 71596 .......... .......... .......... .......... .......... .......... 356 GCACAATTAT GACACACACA ATTTTCCTGA CACAAATTAT CATCACAAAG AAAGCATTTT 71536 .......... .......... .......... .......... .......... .......... 356 TTCACATCTC CATTTACTCT GTGAGGAAAG GTTCTGCACC ATAAACTTTT TTTGGTTTAC 71476 .......... .......... .......... .......... .......... .......... 356 TGGATATTGG CTTTGCCCAG CAAATACACG ATATGAACTA AAGCTGTTGT ATTAAACCAA 71416 .......... .......... .......... .......... .......... .......... 356 ACCCATAGCT CCGAATAAGG GGGCAATTTA CTTTAAACGC TAGGATAGCC ACATTACGCA 71356 .......... .......... .......... .......... .......... .......... 356 TTCGTAACTG TATTTTAAAT TCAACTTCTC CACATTTATG GTGAATTTCT TACTACAAGT 71296 .......... .......... .......... .......... .......... .......... 356 TCATATAGTT CTGCAGCATA ATCTTTAAAA AAAAATTATT T-TTTTTATG ACAAGGAAAA 71237 | | | | | || ||||| | |||||||| |||||| ||| .......... .......... .TGTATCATC ATAATTTATT TATTTTTATG ACAAGGGAAA 395 CCCGTAGCCG CTACCCTATG GGTGCGCAGA GGGTAAAACC CCCACTCCTA TGCAATAGCT 71177 |||| ||||| ||||||| || |||||| | ||||| |||| |||||||||| ||||||| || CCCGCAGCCG CTACCCTTTG TATGCGCACA GGGTAGAACC CCCACTCCTA TGCAATAACT 455 CGCAAACCAC ATAGGAGAGG TAACCCGCAC CAGGCCGAGC TCGACCCAGA AGGCAAACCC 71117 |||||||||| |||||||||| ||||| CGCAAACCAC ATAGGAGAGG TAACCA.... .......... .......... .......... 481 CTTGCTTTCG CGGCAAGGGG TTTCGAACTT GAGACCTCCA ATAAGGAAGT CCCAAGCTCA 71057 .......... .......... .......... .......... .......... .......... 481 AATCACTGGT CCACCTTGAA GGGTAATCTT TTATTTTGTT TAATGCATTT TAAATATATT 70997 .......... .......... .......... .......... .......... .......... 481 ATTAATACAT ATCAAGCAAA TTTTTAAGAG TTTAATGATA AAAAAAAACA TATCTAAACT 70937 .......... .......... .......... .......... .......... .......... 481 ATCTCTTGCG AGTTTCATAC CTCAACTTTC CATTATTCAA ATTTACCTAC CTAAACTATC 70877 .......... .......... .......... .......... .......... .......... 481 ACCTTTTGAC GAGTTCATAC GACAACTATC ACTCCATTTG TATTAAAATT CAAAACACAC 70817 .......... .......... .......... .......... .......... .......... 481 CTCGACTCCA AGGTGTATAG GCCAACTCAC CATCGACATG TGTTTTGATA CAAATGTATT 70757 .......... .......... .......... .......... .......... .......... 481 GATAGTTTAG G 70746 ||| | .....CATAG G 487 hqPGS_C10SLe0045H11.1-_SGN-E380042- (71274 71151) ******************************************************************************** EST sequence 47 -strand 567 n (File: SGN-E209785-) 1 GAACTGTCAA GCATATGTCT CTCCTTGAGA GCTGACTCAC ATGATTCTTT CAAGTTCTGA 61 AGCTCCCAGG AGCGCCTTGT AGATTCATGC TCCCACTCCA TGTACTTTGC TTTAGCAAGC 121 TCTTCCCAGA TCTCTCCAAC AATATATCTT CCTGGATTCA CACCTCTTCC AAGGTCTAAT 181 GCCTGACAGG ATACATAGAA GAGAACTGTA TCATCATAAT TTATTTATTT TTATGACAAG 241 GGAAACCCGC AGCCGCTACC CTTTGTATGC GCACAGGGTA GAACCCCCAC TCCTATGCAA 301 TAACTCGCAA ACCACATAGG AGAGGTAACC ACATAGGAGA GGTAACCGCA CTAGACAAGC 361 CTGGAGCGAC AAGCTCGACC CAAAAGGCAA ACCCCTTGCT TTCCCTGGCA AGGAGTTTCG 421 AACTTGAGAC CTCCCGCATG GAAAATCCAA ACTCAAACCA CTGGGCCACC CCGAAGGGTT 481 CATCATAATT AAGCAGAGCA AACTTCCCTA AAATCATCAT TTCAACTAAA ATAATTCAGC 541 ATATCATCAA AAGAAAAAAT GATCGTT Predicted gene structure (within gDNA segment 74620 to 69148): Exon 1 72380 72370 ( 11 n); cDNA 196 206 ( 11 n); score: 0.636 Intron 1 72369 71275 (1095 n); Pd: 0.901 (s: 0), Pa: 0.000 (s: 0.77) Exon 2 71274 71151 ( 124 n); cDNA 207 331 ( 125 n); score: 0.851 Intron 2 71150 70752 ( 399 n); Pd: 0.000 (s: 0.96), Pa: 0.554 (s: 0) Exon 3 70751 70746 ( 6 n); cDNA 332 337 ( 6 n); score: 0.667 PPA cDNA 549 559 MATCH C10SLe0045H11.1- SGN-E209785- 0.851 141 0.249 C PGS_C10SLe0045H11.1-_SGN-E209785- (72380 72370,71274 71151,70751 70746) Alignment (genomic DNA sequence = upper lines): TAGAAAGGAT GGCACTTATC TAAGAAGCAG CCATCATGGT TAATGCTCTT ACACTCAGTT 72321 ||||| || TAGAAGAGAA C......... .......... .......... .......... .......... 206 GGAAATAGTC CATCATAAGT GGATTTTGGT GGGAGCAGGC ATTCAATGTT GCATTTTCTA 72261 .......... .......... .......... .......... .......... .......... 206 TTATAGATGG TGGATTGTGA AAACGATGGA TTCTGCTATG CAGGTCAATT GGTCATCAGA 72201 .......... .......... .......... .......... .......... .......... 206 TGAAGGCATA CTAAACTGTT CTAGTTGGCA TTGTAAGCTG GAAAGAAAGT GAGAGAGAGA 72141 .......... .......... .......... .......... .......... .......... 206 GATGGTCGAT AAATATTGAC AAATGATCTG GAGGGAGTAA CAACGAGTTA ACTACAAATT 72081 .......... .......... .......... .......... .......... .......... 206 AAAAATGCCT AAAATATTCT TACAAGAATG AAGTTCTTCT TTGAGCAGTC CATGCACATA 72021 .......... .......... .......... .......... .......... .......... 206 ATTCCACCAA AATCCAACAG CAGATATGAG TTGAAAGACA CAATACATCC ACAATGGATC 71961 .......... .......... .......... .......... .......... .......... 206 AACTGCAATG AAAAAATATC ACTGCTAAGA AATGCTTCTC ACAGAGCATA CAATATACAA 71901 .......... .......... .......... .......... .......... .......... 206 ATGAACAAAA CCCTTCATTC ATAGACATAT CTATCTTTGT ATCTACACAA CTATGACTGA 71841 .......... .......... .......... .......... .......... .......... 206 TACCTTTTCC ACTAACCTTC CCACAAGATT CACAATCTCT CCAGCCATCG TCACTTGGAT 71781 .......... .......... .......... .......... .......... .......... 206 GGAAAATCTC ACAGAACCTC CCGTACTCAT ATACAGAACT AAAGGAAAAT AAGAAGTAAT 71721 .......... .......... .......... .......... .......... .......... 206 CAGGCCAATG AAACTCTCAT GTATCAGAAG AAAGATTGCA TTTATTAATA GCCCTGCAAG 71661 .......... .......... .......... .......... .......... .......... 206 CCTCAACATG TTACAGCACA TTAAGCCAAG TAACGGGGAG AACTGGAATC TCTTCATCGC 71601 .......... .......... .......... .......... .......... .......... 206 ACTCAGCACA ATTATGACAC ACACAATTTT CCTGACACAA ATTATCATCA CAAAGAAAGC 71541 .......... .......... .......... .......... .......... .......... 206 ATTTTTTCAC ATCTCCATTT ACTCTGTGAG GAAAGGTTCT GCACCATAAA CTTTTTTTGG 71481 .......... .......... .......... .......... .......... .......... 206 TTTACTGGAT ATTGGCTTTG CCCAGCAAAT ACACGATATG AACTAAAGCT GTTGTATTAA 71421 .......... .......... .......... .......... .......... .......... 206 ACCAAACCCA TAGCTCCGAA TAAGGGGGCA ATTTACTTTA AACGCTAGGA TAGCCACATT 71361 .......... .......... .......... .......... .......... .......... 206 ACGCATTCGT AACTGTATTT TAAATTCAAC TTCTCCACAT TTATGGTGAA TTTCTTACTA 71301 .......... .......... .......... .......... .......... .......... 206 CAAGTTCATA TAGTTCTGCA GCATAATCTT TAAAAAAAAA TTATTT-TTT TTATGACAAG 71242 | | | | | || |||||| ||| |||||||||| .......... .......... ......TGTA TCATCATAAT TTATTTATTT TTATGACAAG 240 GAAAACCCGT AGCCGCTACC CTATGGGTGC GCAGAGGGTA AAACCCCCAC TCCTATGCAA 71182 | ||||||| |||||||||| || || ||| ||| |||||| ||||||||| |||||||||| GGAAACCCGC AGCCGCTACC CTTTGTATGC GCACAGGGTA GAACCCCCAC TCCTATGCAA 300 TAGCTCGCAA ACCACATAGG AGAGGTAACC CGCACCAGGC CGAGCTCGAC CCAGAAGGCA 71122 || ||||||| |||||||||| |||||||||| TAACTCGCAA ACCACATAGG AGAGGTAACC A......... .......... .......... 331 AACCCCTTGC TTTCGCGGCA AGGGGTTTCG AACTTGAGAC CTCCAATAAG GAAGTCCCAA 71062 .......... .......... .......... .......... .......... .......... 331 GCTCAAATCA CTGGTCCACC TTGAAGGGTA ATCTTTTATT TTGTTTAATG CATTTTAAAT 71002 .......... .......... .......... .......... .......... .......... 331 ATATTATTAA TACATATCAA GCAAATTTTT AAGAGTTTAA TGATAAAAAA AAACATATCT 70942 .......... .......... .......... .......... .......... .......... 331 AAACTATCTC TTGCGAGTTT CATACCTCAA CTTTCCATTA TTCAAATTTA CCTACCTAAA 70882 .......... .......... .......... .......... .......... .......... 331 CTATCACCTT TTGACGAGTT CATACGACAA CTATCACTCC ATTTGTATTA AAATTCAAAA 70822 .......... .......... .......... .......... .......... .......... 331 CACACCTCGA CTCCAAGGTG TATAGGCCAA CTCACCATCG ACATGTGTTT TGATACAAAT 70762 .......... .......... .......... .......... .......... .......... 331 GTATTGATAG TTTAGG 70746 |||| .......... CATAGG 337 hqPGS_C10SLe0045H11.1-_SGN-E209785- (71274 71151) ******************************************************************************** EST sequence 31 +strand 569 n (File: SGN-E336504+) 1 ACAAACCATG ATAGAATCTC AGTACAGGCC TCGTGTCACA GAGTCAAAAT TGCAGAAGAT 61 CTCCATAAAC TGTGGGCATG GTGTCACCCC TTTGTTTCAA AAATCGTTGA CTGCCACTGA 121 TGCTGATCTC ACATTATCAC GTCTTGTGAT TCCCAAAAAG TGTGCTGAGG CTTACTTTCC 181 TCCACTTTCT GGGCCACACA AGATCCCCAT TAATATACTG GATACCGACG GCAAGGAATG 241 GAATTTTCAC TTCCGGTTTT GGCCTAATTC AAGGAGTAAA ATGTATGTGC TGGAAGGACT 301 TAGAGATTAC ATGGTCTCGA AGAAGTGGCA AGCAGGTGAT GTAGTTACTT TTTATCGAAT 361 TGAACCAGGA CAGAAACTGG TCATGGGATT AAGGAATACT TCGCCTGGTT CTTCCACCTC 421 ATAGATCTCA GCTCGATGCC GGAGGCGGAT CTACATGTAA CTTATGAGGT TCACAGGAAC 481 TATACTCAGA TCTTGTACGT GTATTATGGA ATTGATGGAA TATCTATAGA TACTTTGATT 541 GTAAACCCAA TCATTATTTT GTATCAACT Predicted gene structure (within gDNA segment 72436 to 77563): Exon 1 73036 73104 ( 69 n); cDNA 1 69 ( 69 n); score: 1.000 Intron 1 73105 74050 ( 946 n); Pd: 0.990 (s: 1.00), Pa: 0.741 (s: 1.00) Exon 2 74051 74150 ( 100 n); cDNA 70 169 ( 100 n); score: 1.000 Intron 2 74151 74483 ( 333 n); Pd: 1.000 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 3 74484 74658 ( 175 n); cDNA 170 344 ( 175 n); score: 1.000 Intron 3 74659 74965 ( 307 n); Pd: 0.957 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 4 74966 75045 ( 80 n); cDNA 345 424 ( 80 n); score: 1.000 Intron 4 75046 76808 (1763 n); Pd: 0.991 (s: 1.00), Pa: 0.918 (s: 1.00) Exon 5 76809 76953 ( 145 n); cDNA 425 569 ( 145 n); score: 1.000 MATCH C10SLe0045H11.1+ SGN-E336504+ 1.000 569 1.000 C PGS_C10SLe0045H11.1+_SGN-E336504+ (73036 73104,74051 74150,74484 74658,74966 75045,76809 76953) Alignment (genomic DNA sequence = upper lines): ACAAACCATG ATAGAATCTC AGTACAGGCC TCGTGTCACA GAGTCAAAAT TGCAGAAGAT 73095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAACCATG ATAGAATCTC AGTACAGGCC TCGTGTCACA GAGTCAAAAT TGCAGAAGAT 60 CTCCATAAAA TATCCTTTGT TGTATACTCA GTCATCTTGG CCTCCGAAAA CTACAAAGGG 73155 ||||||||| CTCCATAAA. .......... .......... .......... .......... .......... 69 AGAGCACTGA AGCCATTTTT TAAGCAAATA AAATAAGTGG TATGTAAACA AATAAAGTTT 73215 .......... .......... .......... .......... .......... .......... 69 GCTCTCATTT TTAGTTCTTG GAGATGGAGA TGAATAAGAA CCTAATTGTT TTATTTAGAG 73275 .......... .......... .......... .......... .......... .......... 69 TAAAACGTCT GAATTTTATT GAATATTTGA ATATTAAAAC ACGTATATTT AGATTATAAC 73335 .......... .......... .......... .......... .......... .......... 69 ATGTAAATTT GAATACATAT CTGAATATTA AAATGTTGTA TTAGGATTTG AATACCATAT 73395 .......... .......... .......... .......... .......... .......... 69 AATTACGGTT ATTTGTTTCC TCAACATCTT AATGTATAGA ACCTATCTTT ATTTATAAAT 73455 .......... .......... .......... .......... .......... .......... 69 TAATAAATAT GAAACTCAAA TAAGATACTA TATCAACAAA ATATTCTTCA AAAAAATTAT 73515 .......... .......... .......... .......... .......... .......... 69 ATGGTGGGTG GTGGTGTTAT GGCTAATGGT GGTGGTTGTG TGTGTCGACA GAGGGTGGTG 73575 .......... .......... .......... .......... .......... .......... 69 TTCGCTAATG GTGATGGTTG TGGGTGGTGG CTAACAATGC TGTTTAGTAG TGGTGGTTGA 73635 .......... .......... .......... .......... .......... .......... 69 TGGTGGTGGA GGCTTATAAT CACGGTGGAT GATAACGACA ACTAATTGTG GCAGTACTAA 73695 .......... .......... .......... .......... .......... .......... 69 TAGTGTGATT GACAATATAT AATGGTGATG CTTGTTAAAA GTGTTTGATG ACTGTTGTGG 73755 .......... .......... .......... .......... .......... .......... 69 TAATGGTGAT TGGTGGTGAT GACTGACTGT GGTGATTGCC GGTGGTGGTG GTCGTTGATG 73815 .......... .......... .......... .......... .......... .......... 69 ATGGTGGTGG TTAGATGTGA AAGTGGATGG ACTAGTGGTG AATTGTCATT AATCGTATTG 73875 .......... .......... .......... .......... .......... .......... 69 AGACTTTGTT ATTCTAATTC ATTCAGTGGT TGTAATTGTT TTAAAAAAAT TAACTGCACT 73935 .......... .......... .......... .......... .......... .......... 69 TGATGACTGA GATTTTGAAT CATAAAGATG CGACTTGGTT GACAACAAGA TCTCTCTTCA 73995 .......... .......... .......... .......... .......... .......... 69 TGGTCGCACT TTGAATTTAA CGATTGATAT TCTTGTGCTC CTTGACATAC CTTAGCTGTG 74055 ||||| .......... .......... .......... .......... .......... .....CTGTG 74 GGCATGGTGT CACCCCTTTG TTTCAAAAAT CGTTGACTGC CACTGATGCT GATCTCACAT 74115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATGGTGT CACCCCTTTG TTTCAAAAAT CGTTGACTGC CACTGATGCT GATCTCACAT 134 TATCACGTCT TGTGATTCCC AAAAAGTGTG CTGAGGTGAG TTTCTATTTT TCCTGGAATT 74175 |||||||||| |||||||||| |||||||||| ||||| TATCACGTCT TGTGATTCCC AAAAAGTGTG CTGAG..... .......... .......... 169 TCATGCCTTC TTTAGCAAGA TGTGTTTTGG GGTAAATGTG AATATCCACT GTTTTTTATA 74235 .......... .......... .......... .......... .......... .......... 169 TTTTTGATTC CTGCGACATC TTTTATTTCA GCAAGTTTCT CTTGCCAATT TTTCACTTTC 74295 .......... .......... .......... .......... .......... .......... 169 ACATTCCCTT TTCATAACTA CTTTTATTTT CTGCACTTGC GTTGAGGCTC CTTAGGAAAC 74355 .......... .......... .......... .......... .......... .......... 169 AAAACCTCTC TACCTCCATG AGGTAGGGTA AGGTCGGTGT ACACTACCCT TCTCAGACCT 74415 .......... .......... .......... .......... .......... .......... 169 CACTTGTGGG GTTTCACTGA GTATGTTGTT GTAGTTGTTG TTGTTGTTCT AAGCTCTCCT 74475 .......... .......... .......... .......... .......... .......... 169 GTTTGTAGGC TTACTTTCCT CCACTTTCTG GGCCACACAA GATCCCCATT AATATACTGG 74535 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GC TTACTTTCCT CCACTTTCTG GGCCACACAA GATCCCCATT AATATACTGG 221 ATACCGACGG CAAGGAATGG AATTTTCACT TCCGGTTTTG GCCTAATTCA AGGAGTAAAA 74595 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACCGACGG CAAGGAATGG AATTTTCACT TCCGGTTTTG GCCTAATTCA AGGAGTAAAA 281 TGTATGTGCT GGAAGGACTT AGAGATTACA TGGTCTCGAA GAAGTGGCAA GCAGGTGATG 74655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATGTGCT GGAAGGACTT AGAGATTACA TGGTCTCGAA GAAGTGGCAA GCAGGTGATG 341 TAGGTAATTG AAGTAATCTA TCCATTTAAA TTTTTGAGTA CTTTCTTCGT GGTCAATGGA 74715 ||| TAG....... .......... .......... .......... .......... .......... 344 TCTGCAATGT CGAGAAAAGA CTTCACAGTG GTTCAGATAA AACCAACATG CCACTCAAAG 74775 .......... .......... .......... .......... .......... .......... 344 GCAGAGTGCA ATTCTAACTG AGAAAATTGA TAGAATGTCC TGTTGATCTA TGATGACCAT 74835 .......... .......... .......... .......... .......... .......... 344 TAGTGAATTA GTTGATTATA GCACTATAAG TAGTGACATG TTCAGATGCA TCAGTGTAGT 74895 .......... .......... .......... .......... .......... .......... 344 GTAATGCTCC TTCTACTCAT GTATGGAACA TCGTTTATCG GACCCTGAGT TGCAGTTTTT 74955 .......... .......... .......... .......... .......... .......... 344 TGGTTTGCAG TTACTTTTTA TCGAATTGAA CCAGGACAGA AACTGGTCAT GGGATTAAGG 75015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... TTACTTTTTA TCGAATTGAA CCAGGACAGA AACTGGTCAT GGGATTAAGG 394 AATACTTCGC CTGGTTCTTC CACCTCATAG GTATGCAAGA CATGTTCTTT TGATTTTATT 75075 |||||||||| |||||||||| |||||||||| AATACTTCGC CTGGTTCTTC CACCTCATAG .......... .......... .......... 424 ACCCAACTAA AACTTTGCAA GGGTTAAGAG AAGTTTTAGT TCCATTATGA TGGAATCATA 75135 .......... .......... .......... .......... .......... .......... 424 TGCATTTTTC GACGGTGAGC TTAGAGGCAA TCCAAGATTT GAACTTTATA GATTTGGTAT 75195 .......... .......... .......... .......... .......... .......... 424 ACTACTGAAT TCACTGATCA TTTGAGTTAC TAGGTACGAA ATTGAATACT TGTACATATG 75255 .......... .......... .......... .......... .......... .......... 424 TAGTAGATTT CTCGACATAT ATATAGGGTG TTGGCCAAAG CTACGGGTTT AGCTTGTTTA 75315 .......... .......... .......... .......... .......... .......... 424 GCTGAACTCG TAAGTTACCT TGTACTTTAC CCCAGACGAG ATTTGAACTT AGTTAGGTTT 75375 .......... .......... .......... .......... .......... .......... 424 AAGAGATAGT GGTCAAAAAC ACACCGGAAG TCAGGGGCGG ACCCCCTCAA TAATAAATAG 75435 .......... .......... .......... .......... .......... .......... 424 AATTAGATGG TTCAGTGGCA AGTCCTTGAA TATTAAACTG CACTCCCCCA GTTCGAATTC 75495 .......... .......... .......... .......... .......... .......... 424 CTACGACAAC ATTTATTTAT TTTCCTTTTT TAGTTCATTT TTTTAAAGAA AAGATCAGAT 75555 .......... .......... .......... .......... .......... .......... 424 ATGTTTTTCA AGCTTTTTTT AGCCTTATTT TTCATTTTAA AACGTGCTAA AAGTATGTTT 75615 .......... .......... .......... .......... .......... .......... 424 TGAACCCAAA AAAAATCAAG GGTCCCATTT CTAAAGACTT ATTTACACGG TTATACTTTT 75675 .......... .......... .......... .......... .......... .......... 424 ATTTTTTGAA CCCCCTGAAT GAAAATTCTG GGTCCGCCAC TGCTTGAAGT ATCACATTTT 75735 .......... .......... .......... .......... .......... .......... 424 GCGAGTTTCA TACTCAAACT ATCAGGTGTT TTGCGTTTTA TACTTGAACT ACACCAATTA 75795 .......... .......... .......... .......... .......... .......... 424 TTCATCAAAA CACACGTCGA AGCTAACTAG ACCAAGTGTT AGAGTACACA ATCACCGAAA 75855 .......... .......... .......... .......... .......... .......... 424 GGTTGGTGAT AAGTTAATTT GCCAATAAAT TTTTTTTTTC GCATGACAGT TGACTTATTA 75915 .......... .......... .......... .......... .......... .......... 424 ATTTCGAGAG ATGTTTTGAT AAATAATTCA CGATAATTCA GGTAGGAGAC AAACACCAGA 75975 .......... .......... .......... .......... .......... .......... 424 TAGTTCAAAT AATAAACTCG TAAAAAATGT CGTTTAAGTG TGCTTTTCAT CATTTATTTT 76035 .......... .......... .......... .......... .......... .......... 424 AGATTTTCTA ATTAATTCCT CTAATCATTC GTATGGAGTG CCATTCGACA CAAGTTTTAA 76095 .......... .......... .......... .......... .......... .......... 424 ACAAAAAAAG AGTGTACACC ACACCATCAT ATACTAATCG ATGTGTGTCT TAATAAATAG 76155 .......... .......... .......... .......... .......... .......... 424 TTGGTGACAG TTCAGATAAG AAACGTAAAC ACCGGGTGGA AACTCGCAAA AGAGTGATGT 76215 .......... .......... .......... .......... .......... .......... 424 TTCCGATGTG TTTTTGACCA TTATATCCTA GATTAAATGC TGACAATGTG CTGAAATGGT 76275 .......... .......... .......... .......... .......... .......... 424 ATGGAAGACA CCATTGCAAG TGCCTATGCT AGTCCTTAAA TTTGATTTGA TTTGCATGCA 76335 .......... .......... .......... .......... .......... .......... 424 TTTTATTCCC TTTTGGTCTC TGAAACAACA TCCTGAGTTT GGTTTGGAAT CTGATGCCGG 76395 .......... .......... .......... .......... .......... .......... 424 TTACTTAACT TTACTCATCG TACAAAGAGT AAAATTCACC GACCAAAATA CTCTTTTGTG 76455 .......... .......... .......... .......... .......... .......... 424 TATGAAAACT ACAAGTTCCT TTGAAGGCAA TCTTGGAGCA ACGGTAAAAT TCTCTCGTTG 76515 .......... .......... .......... .......... .......... .......... 424 TGATACATAA TTCACGGATT TGAGCTGATG CTTGCGTCAG GGGTAGATTG CCTGCACCAC 76575 .......... .......... .......... .......... .......... .......... 424 ACCCCCTTGG AGTGCAACTC TTTCTCAAAC ATTGAGTGAA TGCAAAATGT TTCCGCCCTT 76635 .......... .......... .......... .......... .......... .......... 424 CATTATTAAG TTTCCATATG TCATCATAAA AAGTTTGCAC CTATATATCA TGGTTGAAGT 76695 .......... .......... .......... .......... .......... .......... 424 TGTATATAAT ATTTCTATTT GAATTCTATA TATGATATGA TGAATACGAA ACTCATATAT 76755 .......... .......... .......... .......... .......... .......... 424 ACTAATGATC TAGTTTGATG ATCTACTAAG CTGAAGATTA AGATGTTCTG CAGATCTCAG 76815 ||||||| .......... .......... .......... .......... .......... ...ATCTCAG 431 CTCGATGCCG GAGGCGGATC TACATGTAAC TTATGAGGTT CACAGGAACT ATACTCAGAT 76875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGATGCCG GAGGCGGATC TACATGTAAC TTATGAGGTT CACAGGAACT ATACTCAGAT 491 CTTGTACGTG TATTATGGAA TTGATGGAAT ATCTATAGAT ACTTTGATTG TAAACCCAAT 76935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTACGTG TATTATGGAA TTGATGGAAT ATCTATAGAT ACTTTGATTG TAAACCCAAT 551 CATTATTTTG TATCAACT 76953 |||||||||| |||||||| CATTATTTTG TATCAACT 569 hqPGS_C10SLe0045H11.1+_SGN-E336504+ (73036 73104,74051 74150,74484 74658,74966 75045,76809 76953) ******************************************************************************** EST sequence 58 +strand 717 n (File: SGN-E262130+) 1 GCAGTCACTG AATCTGCAAA GCAGGTCACA GCAATTGCTG ATCCTCCTAA AGTTGAGACT 61 GCTACTGATC TTTTCGACAT GCTTTCTATG GATTCTCCAA GTGACAATTG TGCAAGTGCT 121 GCTCCTGTAG AGGATAACAC ATGGACAGCT TTTCAATGTA TTCCTTCTCA AGAAGAAGTA 181 GAAGCAAAAA GCGGTGTTGC AAAATCTGAT CATCGGAAAT GCCAATCCGC TTCTGCAATT 241 GATGATTTAT TCAAGGATTC ATCAACACTG TCATCATCAG TTTCAACTTC TTCCTTGTCA 301 GAGAAGCTTC CGAAAGATGT CAAAAATGAT ATCATGAACC TTTTCGACAA GTCCAATATG 361 GTGTCACCAT TTGCTATGCA TCAGCAACAA CTTGCCCAGC TAGCTCAACA ACAATCTCTT 421 CTTATGGCTG CTGCCGCTGC TAGTGGCAAT TTGAAAATCC CTGGGGATGT TCAACAAAGC 481 CCAAATGGCT CCAACATAGT AAACCAAAGT TGGCCACATG CAGGCTACCA GTTCCCTGGA 541 ATGATGATGC CAGCCAGTGG AAAGACTGAA CTGGAGAAAT ATTTTCAGGC GGGAGCAGCA 601 CATTCAGCTG GAAACTTTGT GCCAGTATCG ACATCCAGTG TTTATCAAAT GGGACAGAAT 661 TATTCCGGCA ATGGTACAGT TCCTTCTATG CCGAGTGGAG ATGCTGCTAC CACACTT Predicted gene structure (within gDNA segment 82025 to 78211): Exon 1 81425 81263 ( 163 n); cDNA 1 163 ( 163 n); score: 1.000 Intron 1 81262 80054 (1209 n); Pd: 0.889 (s: 1.00), Pa: 0.966 (s: 1.00) Exon 2 80053 79866 ( 188 n); cDNA 164 351 ( 188 n); score: 1.000 Intron 2 79865 79668 ( 198 n); Pd: 0.999 (s: 1.00), Pa: 0.882 (s: 1.00) Exon 3 79667 79431 ( 237 n); cDNA 352 588 ( 237 n); score: 1.000 Intron 3 79430 79347 ( 84 n); Pd: 0.996 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 79346 79297 ( 50 n); cDNA 589 638 ( 50 n); score: 1.000 Intron 4 79296 78900 ( 397 n); Pd: 0.982 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 5 78899 78821 ( 79 n); cDNA 639 717 ( 79 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E262130+ 1.000 717 1.000 C PGS_C10SLe0045H11.1-_SGN-E262130+ (81425 81263,80053 79866,79667 79431,79346 79297,78899 78821) Alignment (genomic DNA sequence = upper lines): GCAGTCACTG AATCTGCAAA GCAGGTCACA GCAATTGCTG ATCCTCCTAA AGTTGAGACT 81366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTCACTG AATCTGCAAA GCAGGTCACA GCAATTGCTG ATCCTCCTAA AGTTGAGACT 60 GCTACTGATC TTTTCGACAT GCTTTCTATG GATTCTCCAA GTGACAATTG TGCAAGTGCT 81306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACTGATC TTTTCGACAT GCTTTCTATG GATTCTCCAA GTGACAATTG TGCAAGTGCT 120 GCTCCTGTAG AGGATAACAC ATGGACAGCT TTTCAATGTA TTCGTAAGTC ACAGTTTTGT 81246 |||||||||| |||||||||| |||||||||| |||||||||| ||| GCTCCTGTAG AGGATAACAC ATGGACAGCT TTTCAATGTA TTC....... .......... 163 TAGAATTGTC TTTTCTGTAT CTTTACTAGG AGAGGATGGT CAATCCCAGC AGAGGCAAAA 81186 .......... .......... .......... .......... .......... .......... 163 TATTTAGTTC ATCTCCTCCC ATCTACTTAA GTATTGATGG ACAAGTTACG CAAACCTAGA 81126 .......... .......... .......... .......... .......... .......... 163 CAAAATATTT AGTTGATCTC TTCCCATCTA CCCAAGTCTT AGTGGACAAG TTACGCAAAC 81066 .......... .......... .......... .......... .......... .......... 163 CTAACTTTAT TGATACCTTC CTCTTTATCT TGAGGTCTAC ATGGGTTCAA ATCCCAATAG 81006 .......... .......... .......... .......... .......... .......... 163 GGATAAAAAA AAAAGTTGGA TATTCTCCTC TCATTTGCGT AAGTATTTGT AGGCAGAGTT 80946 .......... .......... .......... .......... .......... .......... 163 GCCCAATAAT AATTGTAACG GTGGAAGAGT TCTTGTTGCA GTTGGATTAG AGGTGCATGC 80886 .......... .......... .......... .......... .......... .......... 163 AGATTTGCTA AGCCACCAGC ATTATACCAA AAGAAATCAT TTCTTTCTCT TTTTATTATG 80826 .......... .......... .......... .......... .......... .......... 163 ATCCATTATT TTCAGTTCCT TATGTTTCTA CTTCTGGAAA GAGGGAAGAG AGTGATAGTT 80766 .......... .......... .......... .......... .......... .......... 163 TGAGAAGAGC AACATGTCAC GGACTTTTAG ACTCGGACAA GACTCCGTGC GGCACTTGAC 80706 .......... .......... .......... .......... .......... .......... 163 GTTTTTGCTC ACGAATCTTT CACGATCTCG CAAAATCAAG TCAGCCTTTC ACAATTTGGA 80646 .......... .......... .......... .......... .......... .......... 163 TCGCTAAGAG AAAGTAAGAA GAAAGACTAG AGACGGAAAT TGGAAGAATG GACTAGTATC 80586 .......... .......... .......... .......... .......... .......... 163 TTTATTAGTC AAATTTGTTG GATGCTTTAC AAATACATTG ACCCTACTAT TTATACTACT 80526 .......... .......... .......... .......... .......... .......... 163 CTACAAACTA AGAGTAAATA AATGCTATAT ACAAGTCCCT ATGTACATGC TTCTTATTCC 80466 .......... .......... .......... .......... .......... .......... 163 AAGAAGATGT CTTGATTTCT TCCAAAAGGA CTCCTAGATT TCTCTAGTCT GCCCCAAGAC 80406 .......... .......... .......... .......... .......... .......... 163 TCTAGAAGAC TTCTAGAATC CTTCCCAAGC CTCTCCAATG CCCAAGGCTG CTGCCCCTTG 80346 .......... .......... .......... .......... .......... .......... 163 GTCTGCTGCA CGCCCAGGCC GCTTCTGCCC CTTAGTCTGC CAGGCTTTTG GGCCGCCTGT 80286 .......... .......... .......... .......... .......... .......... 163 GCAGCAGTCT GCCTGGCGCT GGGCCTTTGG GCCGCCTGTG CTGCAGTCCG CCTGGATGGG 80226 .......... .......... .......... .......... .......... .......... 163 TGGGCTGCCT GCTCCCTTGC ATGCGCTGCA AGCTGCACGG GCTGGTGACG TTCTGCTTGG 80166 .......... .......... .......... .......... .......... .......... 163 ATAATTGGCG GGATGTCACA AACAGCTTGA AAACACTCAG GAACCTGTAT TACAGTTGCA 80106 .......... .......... .......... .......... .......... .......... 163 ATCTCGTTTC TTTAGCTCAT TTTATTCTAA TCAAACCTTG TAAACTTCTC AGCTTCTCAA 80046 |||||||| .......... .......... .......... .......... .......... ..CTTCTCAA 171 GAAGAAGTAG AAGCAAAAAG CGGTGTTGCA AAATCTGATC ATCGGAAATG CCAATCCGCT 79986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAGTAG AAGCAAAAAG CGGTGTTGCA AAATCTGATC ATCGGAAATG CCAATCCGCT 231 TCTGCAATTG ATGATTTATT CAAGGATTCA TCAACACTGT CATCATCAGT TTCAACTTCT 79926 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCAATTG ATGATTTATT CAAGGATTCA TCAACACTGT CATCATCAGT TTCAACTTCT 291 TCCTTGTCAG AGAAGCTTCC GAAAGATGTC AAAAATGATA TCATGAACCT TTTCGACAAG 79866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTGTCAG AGAAGCTTCC GAAAGATGTC AAAAATGATA TCATGAACCT TTTCGACAAG 351 GTACTAATAT GCTATTTAAT AATGGAGCTT TAGGGTGGTT GTTATTATTA TTATTATTAT 79806 .......... .......... .......... .......... .......... .......... 351 TATATTGTCA TTGTTGAACT TGATTGGGGC AACATGGTTA GTGAGGATTC ATATAGCTAT 79746 .......... .......... .......... .......... .......... .......... 351 TCTCAACTAG CATAGGATTG AGGCGTAGTT CTATATAGTC AAAAAATCAT TTTATCTAAA 79686 .......... .......... .......... .......... .......... .......... 351 ATAATGTACT TTCTTCAGTC CAATATGGTG TCACCATTTG CTATGCATCA GCAACAACTT 79626 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........TC CAATATGGTG TCACCATTTG CTATGCATCA GCAACAACTT 393 GCCCAGCTAG CTCAACAACA ATCTCTTCTT ATGGCTGCTG CCGCTGCTAG TGGCAATTTG 79566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCAGCTAG CTCAACAACA ATCTCTTCTT ATGGCTGCTG CCGCTGCTAG TGGCAATTTG 453 AAAATCCCTG GGGATGTTCA ACAAAGCCCA AATGGCTCCA ACATAGTAAA CCAAAGTTGG 79506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCCCTG GGGATGTTCA ACAAAGCCCA AATGGCTCCA ACATAGTAAA CCAAAGTTGG 513 CCACATGCAG GCTACCAGTT CCCTGGAATG ATGATGCCAG CCAGTGGAAA GACTGAACTG 79446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACATGCAG GCTACCAGTT CCCTGGAATG ATGATGCCAG CCAGTGGAAA GACTGAACTG 573 GAGAAATATT TTCAGGTAAA ATGTCTGAAT TTTTCAAGTT CTATTGAAAT GTGCCCTATA 79386 |||||||||| ||||| GAGAAATATT TTCAG..... .......... .......... .......... .......... 588 GACTCTGCTA AAAACTGTTT TTCTGTGCTT GTAAACTAGG CGGGAGCAGC ACATTCAGCT 79326 | |||||||||| |||||||||| .......... .......... .......... .........G CGGGAGCAGC ACATTCAGCT 609 GGAAACTTTG TGCCAGTATC GACATCCAGG TACGGACTTC TTATATGTCA TTTGAGGACT 79266 |||||||||| |||||||||| ||||||||| GGAAACTTTG TGCCAGTATC GACATCCAG. .......... .......... .......... 638 GTTATAAATT GGTCTCGCAG TGCTAGATTT AGATGCAACA ATATTTTTGG AAGGCATTAT 79206 .......... .......... .......... .......... .......... .......... 638 CTGAGGTGAA ATACCTGAAT ATAGGCTCTG TCTATGCAAA AAAAAAAACG TTAATTAGAC 79146 .......... .......... .......... .......... .......... .......... 638 ACAGTCTATC CTCAAGTTTC ACTTCAGATT CCCATGCCTA GTAAGCAGAA GCGTAAAATA 79086 .......... .......... .......... .......... .......... .......... 638 GAGAAAACTG TAGCACAATA AACAAGTAAA ATGAATAAAA TCAATCATCA ACTAAAATTA 79026 .......... .......... .......... .......... .......... .......... 638 TGTGCAAATA TTTACGGAAA ATGCAATATA AAGCTTAAAT CATGGATCCG TCTCTGCAGA 78966 .......... .......... .......... .......... .......... .......... 638 ATGCAATATA CTGGAGAGTA TCTGCTATAA ACCTCTCCCT TTTAATTTTC CTCTTGTATA 78906 .......... .......... .......... .......... .......... .......... 638 TTGCAGTGTT TATCAAATGG GACAGAATTA TTCCGGCAAT GGTACAGTTC CTTCTATGCC 78846 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......TGTT TATCAAATGG GACAGAATTA TTCCGGCAAT GGTACAGTTC CTTCTATGCC 692 GAGTGGAGAT GCTGCTACCA CACTT 78821 |||||||||| |||||||||| ||||| GAGTGGAGAT GCTGCTACCA CACTT 717 hqPGS_C10SLe0045H11.1-_SGN-E262130+ (81425 81263,80053 79866,79667 79431,79346 79297,78899 78821) ******************************************************************************** EST sequence 57 +strand 586 n (File: SGN-E551144+) 1 TGCAGTCACT GAATCTGCAA AGCAGGTCAC AGCAATTGCT GATCCTCCTA AAGTTGAGAC 61 TGCTACTGAT CTTTTCGACA TGCTTTCTAT GGATTCTCCA AGTGACAATT GTGCAAGTGC 121 TGCTCCTGTA GAGGATAACA CATGGACAGC TTTTCAATGT ATTCCTTCTC AAGAAGAAGT 181 AGAAGCAAAA AGCGGTGTTG CAAAATCTGA TCATCGGAAA TGCCAATCCG CTTCTGCAAT 241 TGATGATTTA TTCAAGGATT CATCAACACT GTCATCATCA GTTTCAACTT CTTCCTTGTC 301 AGAGAAGCTT CCGAAAGATG TCAAAAATGA TATCATGAAC CTTTTCGACA AGTCCAATAT 361 GGTGTCACCA TTTGCTATGC ATCAGCAACA ACTTGCCCAG CTAGCTCAAC AACAATCTCT 421 TCTTATGGCT GCTGCCGCTG CTAGTGGCAA TTTGAAAATC CCTGGGGATG TTCAACAAAG 481 CCCAAATGGC TCCAACATAG TAAACCAAAG TTGGCCACAT GCAGGCTACC AGTTCCCTGG 541 AATGATGATG CCAGCCAGTG GAAAGACTGA ACTGGAGAAA TATTTT Predicted gene structure (within gDNA segment 82026 to 78824): Exon 1 81426 81263 ( 164 n); cDNA 1 164 ( 164 n); score: 1.000 Intron 1 81262 80054 (1209 n); Pd: 0.889 (s: 1.00), Pa: 0.966 (s: 1.00) Exon 2 80053 79866 ( 188 n); cDNA 165 352 ( 188 n); score: 1.000 Intron 2 79865 79668 ( 198 n); Pd: 0.999 (s: 1.00), Pa: 0.882 (s: 1.00) Exon 3 79667 79434 ( 234 n); cDNA 353 586 ( 234 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E551144+ 1.000 586 1.000 C PGS_C10SLe0045H11.1-_SGN-E551144+ (81426 81263,80053 79866,79667 79434) Alignment (genomic DNA sequence = upper lines): TGCAGTCACT GAATCTGCAA AGCAGGTCAC AGCAATTGCT GATCCTCCTA AAGTTGAGAC 81367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGTCACT GAATCTGCAA AGCAGGTCAC AGCAATTGCT GATCCTCCTA AAGTTGAGAC 60 TGCTACTGAT CTTTTCGACA TGCTTTCTAT GGATTCTCCA AGTGACAATT GTGCAAGTGC 81307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTACTGAT CTTTTCGACA TGCTTTCTAT GGATTCTCCA AGTGACAATT GTGCAAGTGC 120 TGCTCCTGTA GAGGATAACA CATGGACAGC TTTTCAATGT ATTCGTAAGT CACAGTTTTG 81247 |||||||||| |||||||||| |||||||||| |||||||||| |||| TGCTCCTGTA GAGGATAACA CATGGACAGC TTTTCAATGT ATTC...... .......... 164 TTAGAATTGT CTTTTCTGTA TCTTTACTAG GAGAGGATGG TCAATCCCAG CAGAGGCAAA 81187 .......... .......... .......... .......... .......... .......... 164 ATATTTAGTT CATCTCCTCC CATCTACTTA AGTATTGATG GACAAGTTAC GCAAACCTAG 81127 .......... .......... .......... .......... .......... .......... 164 ACAAAATATT TAGTTGATCT CTTCCCATCT ACCCAAGTCT TAGTGGACAA GTTACGCAAA 81067 .......... .......... .......... .......... .......... .......... 164 CCTAACTTTA TTGATACCTT CCTCTTTATC TTGAGGTCTA CATGGGTTCA AATCCCAATA 81007 .......... .......... .......... .......... .......... .......... 164 GGGATAAAAA AAAAAGTTGG ATATTCTCCT CTCATTTGCG TAAGTATTTG TAGGCAGAGT 80947 .......... .......... .......... .......... .......... .......... 164 TGCCCAATAA TAATTGTAAC GGTGGAAGAG TTCTTGTTGC AGTTGGATTA GAGGTGCATG 80887 .......... .......... .......... .......... .......... .......... 164 CAGATTTGCT AAGCCACCAG CATTATACCA AAAGAAATCA TTTCTTTCTC TTTTTATTAT 80827 .......... .......... .......... .......... .......... .......... 164 GATCCATTAT TTTCAGTTCC TTATGTTTCT ACTTCTGGAA AGAGGGAAGA GAGTGATAGT 80767 .......... .......... .......... .......... .......... .......... 164 TTGAGAAGAG CAACATGTCA CGGACTTTTA GACTCGGACA AGACTCCGTG CGGCACTTGA 80707 .......... .......... .......... .......... .......... .......... 164 CGTTTTTGCT CACGAATCTT TCACGATCTC GCAAAATCAA GTCAGCCTTT CACAATTTGG 80647 .......... .......... .......... .......... .......... .......... 164 ATCGCTAAGA GAAAGTAAGA AGAAAGACTA GAGACGGAAA TTGGAAGAAT GGACTAGTAT 80587 .......... .......... .......... .......... .......... .......... 164 CTTTATTAGT CAAATTTGTT GGATGCTTTA CAAATACATT GACCCTACTA TTTATACTAC 80527 .......... .......... .......... .......... .......... .......... 164 TCTACAAACT AAGAGTAAAT AAATGCTATA TACAAGTCCC TATGTACATG CTTCTTATTC 80467 .......... .......... .......... .......... .......... .......... 164 CAAGAAGATG TCTTGATTTC TTCCAAAAGG ACTCCTAGAT TTCTCTAGTC TGCCCCAAGA 80407 .......... .......... .......... .......... .......... .......... 164 CTCTAGAAGA CTTCTAGAAT CCTTCCCAAG CCTCTCCAAT GCCCAAGGCT GCTGCCCCTT 80347 .......... .......... .......... .......... .......... .......... 164 GGTCTGCTGC ACGCCCAGGC CGCTTCTGCC CCTTAGTCTG CCAGGCTTTT GGGCCGCCTG 80287 .......... .......... .......... .......... .......... .......... 164 TGCAGCAGTC TGCCTGGCGC TGGGCCTTTG GGCCGCCTGT GCTGCAGTCC GCCTGGATGG 80227 .......... .......... .......... .......... .......... .......... 164 GTGGGCTGCC TGCTCCCTTG CATGCGCTGC AAGCTGCACG GGCTGGTGAC GTTCTGCTTG 80167 .......... .......... .......... .......... .......... .......... 164 GATAATTGGC GGGATGTCAC AAACAGCTTG AAAACACTCA GGAACCTGTA TTACAGTTGC 80107 .......... .......... .......... .......... .......... .......... 164 AATCTCGTTT CTTTAGCTCA TTTTATTCTA ATCAAACCTT GTAAACTTCT CAGCTTCTCA 80047 ||||||| .......... .......... .......... .......... .......... ...CTTCTCA 171 AGAAGAAGTA GAAGCAAAAA GCGGTGTTGC AAAATCTGAT CATCGGAAAT GCCAATCCGC 79987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGAAGTA GAAGCAAAAA GCGGTGTTGC AAAATCTGAT CATCGGAAAT GCCAATCCGC 231 TTCTGCAATT GATGATTTAT TCAAGGATTC ATCAACACTG TCATCATCAG TTTCAACTTC 79927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGCAATT GATGATTTAT TCAAGGATTC ATCAACACTG TCATCATCAG TTTCAACTTC 291 TTCCTTGTCA GAGAAGCTTC CGAAAGATGT CAAAAATGAT ATCATGAACC TTTTCGACAA 79867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTTGTCA GAGAAGCTTC CGAAAGATGT CAAAAATGAT ATCATGAACC TTTTCGACAA 351 GGTACTAATA TGCTATTTAA TAATGGAGCT TTAGGGTGGT TGTTATTATT ATTATTATTA 79807 | G......... .......... .......... .......... .......... .......... 352 TTATATTGTC ATTGTTGAAC TTGATTGGGG CAACATGGTT AGTGAGGATT CATATAGCTA 79747 .......... .......... .......... .......... .......... .......... 352 TTCTCAACTA GCATAGGATT GAGGCGTAGT TCTATATAGT CAAAAAATCA TTTTATCTAA 79687 .......... .......... .......... .......... .......... .......... 352 AATAATGTAC TTTCTTCAGT CCAATATGGT GTCACCATTT GCTATGCATC AGCAACAACT 79627 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........T CCAATATGGT GTCACCATTT GCTATGCATC AGCAACAACT 393 TGCCCAGCTA GCTCAACAAC AATCTCTTCT TATGGCTGCT GCCGCTGCTA GTGGCAATTT 79567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCCAGCTA GCTCAACAAC AATCTCTTCT TATGGCTGCT GCCGCTGCTA GTGGCAATTT 453 GAAAATCCCT GGGGATGTTC AACAAAGCCC AAATGGCTCC AACATAGTAA ACCAAAGTTG 79507 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATCCCT GGGGATGTTC AACAAAGCCC AAATGGCTCC AACATAGTAA ACCAAAGTTG 513 GCCACATGCA GGCTACCAGT TCCCTGGAAT GATGATGCCA GCCAGTGGAA AGACTGAACT 79447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCACATGCA GGCTACCAGT TCCCTGGAAT GATGATGCCA GCCAGTGGAA AGACTGAACT 573 GGAGAAATAT TTT 79434 |||||||||| ||| GGAGAAATAT TTT 586 hqPGS_C10SLe0045H11.1-_SGN-E551144+ (81426 81263,80053 79866,79667 79434) ******************************************************************************** EST sequence 18 +strand 752 n (File: SGN-E213530+) 1 AAGGTATGAA TTTTCTCTTT CCTGTTCCAT CTCAAAAAGA AAATCTCTTT CCTGTAGATC 61 AAAATATTTG TGTCTTTTTG TCAAAATGTT AAAAATATTT GAGTGTTAAT TCTGTTCAAT 121 TACACCCAAG GTTGTGGCCT AGTGGTCAAT CAAGTCGGTT GAGAACCATG AGGTCTCTAG 181 TTCAAATCAC CGTAGAGACG AAAGAAGAAC ACTAGGTGAT TTCTTCACAT CTGTTCTAGC 241 CTGAACATCC TTAGTGGACA GTGTAATGAG AGGTGGGCAG GTATCCCGTG GAATTAGCTG 301 AGGTTTGAAA GCGGGCCTTG ACACCAATAT ATCAAAAAAT ATAAAGGGAA ACTTACATAA 361 ATATACTATA TTAAAAAAAT ATTTACCATT TATAGCAATA ACATTTGTTT TTACTTGATC 421 ACTTTTAATA CATTATAATA AAGTTCTAAT ACATATTACG GGGAACAATT TATTATTCAC 481 ATATAAAATT GATGAATAAT ACATTTATCA CTCATTTTAA TACACTTGTA ACACAATGTG 541 TCATTTCTTA CCAAACAAGC ATAATATATT TTTAAAAAAA GTCATAATAC ATATATATTG 601 CATACATATT CACTGTAAAT GCATATTGCA GATTTAACAT AGTATTGCTA TGTATTGNTA 661 CNAAATGGTA ATAAATAAAA AGTATCGCTA AAATCAGTAA TTATTTATTA AAATGTATTC 721 ATCCAAGTAA TTTCCCCCCA CCCCCCCCCC CC Predicted gene structure (within gDNA segment 81724 to 87098): Exon 1 82705 82771 ( 67 n); cDNA 118 184 ( 67 n); score: 0.746 Intron 1 82772 83460 ( 689 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0) Exon 2 83461 83466 ( 6 n); cDNA 185 190 ( 6 n); score: 0.833 Intron 2 83467 84849 (1383 n); Pd: 0.809 (s: 0), Pa: 0.620 (s: 0) Exon 3 84850 84860 ( 11 n); cDNA 191 202 ( 12 n); score: 0.500 Intron 3 84861 84991 ( 131 n); Pd: 0.923 (s: 0), Pa: 0.000 (s: 0.72) Exon 4 84992 85087 ( 96 n); cDNA 203 291 ( 89 n); score: 0.661 Intron 4 85088 85150 ( 63 n); Pd: 0.000 (s: 0.60), Pa: 0.830 (s: 0.56) Exon 5 85151 85203 ( 53 n); cDNA 292 344 ( 53 n); score: 0.594 Intron 5 85204 85763 ( 560 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0.96) Exon 6 85764 86075 ( 312 n); cDNA 345 643 ( 299 n); score: 0.841 Intron 6 86076 86377 ( 302 n); Pd: 0.000 (s: 0.88), Pa: 0.330 (s: 0.74) Exon 7 86378 86468 ( 91 n); cDNA 644 733 ( 90 n); score: 0.808 MATCH C10SLe0045H11.1+ SGN-E213530+ 0.777 636 0.846 C PGS_C10SLe0045H11.1+_SGN-E213530+ (82705 82771,83461 83466,84850 84860,84992 85087,85151 85203,85764 86075,86378 86468) Alignment (genomic DNA sequence = upper lines): AAGCACTCCC AAGGGTGTGG TCTGGTCGTT AATAGAGTGG ATTGAGAGCC AAGAGGTCTC 82764 || || ||| |||| ||||| || || || ||| ||| | |||||| || | |||||||| AATTACACCC AAGGTTGTGG CCTAGTGGTC AATCAAGTCG GTTGAGAACC ATGAGGTCTC 177 ACGTTAATTT CTAGAGGAGG CAAAAGATAA TAGGTGATTT CTTGGCATCT GTCCAAGTCT 82824 ||| | TAGTTCA... .......... .......... .......... .......... .......... 184 TGGAGGACAA AGTCAATTGG TACATGTGTT GGTGGGAGGG CCCGTAACAT TGGTCGAAGT 82884 .......... .......... .......... .......... .......... .......... 184 GCACACAAGT TGGATCGGAC ATTACATATA TATATATATA TATGTATATA TATAGTTGGA 82944 .......... .......... .......... .......... .......... .......... 184 TCGGACATTA CGATTATCAG AAAAAACAAT ATATATATAT ATATATACAT ATATATTCGC 83004 .......... .......... .......... .......... .......... .......... 184 ACCCACAGCA CTAAACAAGC AGTATTGTTT TACCCACTTC AGCTCCCTTG AATAGTCCGA 83064 .......... .......... .......... .......... .......... .......... 184 TTTTTCCTCC ACGGCTATAA CGGGTTAAAA GATCTACTAC TTTAATTCCT GTTTCTAAAA 83124 .......... .......... .......... .......... .......... .......... 184 TAGATAATGT TGTATCAAAC TGTATAAAGG CGGCACATAT CTTAAATAGA AAGATGTTGT 83184 .......... .......... .......... .......... .......... .......... 184 ACTAGTATCT ACAAGCACTT ATATTTAGTA GTTCAAATGG TTCTTATGTC AATTAAGAAT 83244 .......... .......... .......... .......... .......... .......... 184 ATTAGCCTTA ATAAGTATAC AAAAAAGGGC TATTAAAGTA TAAAGTGCAG GATAGTAGAC 83304 .......... .......... .......... .......... .......... .......... 184 CATGATCATT TTCATTGTTG CACCATTTCA TAGTTCAGAT ATATCTAGAA AATCTCAGCC 83364 .......... .......... .......... .......... .......... .......... 184 ATGATGAGTG TAGAATAGTC AGTAAGTTAC CTTTGATATG TGCACTCCTA GACTTCTGTG 83424 .......... .......... .......... .......... .......... .......... 184 GATCCCGGAG CATTGCATGC ATATAAAGAT CCCCAGATTC ACGCTAGCCC ATCGAGGACC 83484 | || || .......... .......... .......... ......AATC AC........ .......... 190 TCTGGATTGA ATTAAAAAGA AAAAAAGAGA ACACAATCAT TGCAAGATTA TTAAATAAAT 83544 .......... .......... .......... .......... .......... .......... 190 CCATATATTA AAGACAGTTT CCATTTAATG TCAATAATCC TCTCAGCAGC ATAAGTTCTG 83604 .......... .......... .......... .......... .......... .......... 190 AATGCCACAC TATCAAATTT AAATATATGT ACATACTTGG CTTTGCAATC TGCACACTCC 83664 .......... .......... .......... .......... .......... .......... 190 TTGTTCTCTG GCAACTTAAG GAGTCCTTCG AGAATCTGCC AACAAACACA GTCCACATTA 83724 .......... .......... .......... .......... .......... .......... 190 CATCGAAAAA AAATGCATGT AAAAAGGGAA AATGAAATAA ACCAGGAAAC AAATTGTGTA 83784 .......... .......... .......... .......... .......... .......... 190 CGCAAAAAGC ACTACTGAGA AAAATATAAA TCAGACCACT GAATCGGTGA TAATCTTCCG 83844 .......... .......... .......... .......... .......... .......... 190 TATCCTATGT GTTAAGCCAT GCTATTTGCT TAGATTTGTG AAAAGAATTC CATTTTTCCT 83904 .......... .......... .......... .......... .......... .......... 190 GTCCGAGGCA AGTGAAAGTA CACCAACAAG AAATATTACA ACATGTCTTT TCTTGCAGAA 83964 .......... .......... .......... .......... .......... .......... 190 TACTTCCATG GTAGTACTTA TAATTTCACG CCTCAAGCCT AAGGATCCTA GTATAACTTT 84024 .......... .......... .......... .......... .......... .......... 190 GGCAATTAAA ATTTAAGAAC ACTGAAAGAG TACACTTTCA GTAAGTGTTT GGCTTAACCA 84084 .......... .......... .......... .......... .......... .......... 190 CTCGTAGTTG TCTACTTTTC CTACCTGACC TAACATAGAT GGTGATAATT CAAGTATGAA 84144 .......... .......... .......... .......... .......... .......... 190 AAGGGAACAA TTGATTGTTT GGGTGTGAAA CTTGCGAAAA AAGTGATAAT TCAAATGTGT 84204 .......... .......... .......... .......... .......... .......... 190 GATCATTATC TCTTATTTAA AATAATCAGC AATATTAGCT AGAACCAGCT AATATTTAGA 84264 .......... .......... .......... .......... .......... .......... 190 CATATCAATT ACGTGGCCAT TTGGTACGCG GACTAAATTA TCCCGGGATT ATAGTCCTGC 84324 .......... .......... .......... .......... .......... .......... 190 AATTATAATC CTTGGACTAA TTTATCCCAC CTGGAAGGTG GCATAAAATA ATCCAATAAT 84384 .......... .......... .......... .......... .......... .......... 190 CCCAAGACTG ATGGGATAAG GTGAGATATT TGGGATTAGA TTAATACTAT GTTTGGTTGA 84444 .......... .......... .......... .......... .......... .......... 190 CAGTATAAAT TTATCCTGGA ATATACCATC TTATCCTGCG TAGAACGATC CCTAATAGCT 84504 .......... .......... .......... .......... .......... .......... 190 CAAAAAAATC AAGCTGGTTG TTCTTCTGAT CTATCTTATT ATTAGAAAAC AAACTTCACT 84564 .......... .......... .......... .......... .......... .......... 190 AGAAATTTCA TTCATCAGGC CTAACAGAAG CCAATTTCAC CCCTGTCTGT TCAAAACCTC 84624 .......... .......... .......... .......... .......... .......... 190 TAATATTTCT TCTTTATCCA TTTTGTCGAA TAAAAAGTTT GATCCCTTAA ACATATAGCA 84684 .......... .......... .......... .......... .......... .......... 190 CTCTGTTTCC ATTAGGACGA CAGATTGACT GCCTGTTTTT GAATCAGATC ATCACTTCAG 84744 .......... .......... .......... .......... .......... .......... 190 TACTCATCTC TCAGGATATA ATAACCACAA GGATTCAGTT ATTAACCAAT AGAGCAACGT 84804 .......... .......... .......... .......... .......... .......... 190 TAATCCGACT TCATTTCAAA CTTCATCTGA AATTTCATTA ATCAGGTTAA AGA-GAAGTA 84863 || ||| ||| .......... .......... .......... .......... .....CGTAG AGACGAA... 202 AAATTTCATC CCTGCCAGTT CAAAACCTAT AACATTTCTT CTTTTTCCTG AAAATCTATC 84923 .......... .......... .......... .......... .......... .......... 202 CATTTTCTAA CACCCAACAG TGTGACATAG TGTTCAACGA AATCTAAGGT TCAAATCCCA 84983 .......... .......... .......... .......... .......... .......... 202 AGGAATACAA AATAAGACTC GGTGATTTCT TTTCATCTGT CCTAGCTTGG TGTATAGAGC 85043 | || || ||| |||||||||| | ||||||| ||||| || | | | ........AG AAGAACACTA GGTGATTTCT TCACATCTGT TCTAGC---C TG-A-ACA-- 247 TACCTATTGT TGCTGCTTGC TGCGAGGT-G ACAGATATCC CGTGGATAGA AAAATATATA 85102 | | || || | | | || ||||| | ||| ||||| ||||| TCCTTAGTG- GACAGTGTAA TGAGAGGTGG GCAGGTATCC CGTGG..... .......... 291 TGCATTTTCT CATATCCAAA TGATCCTTTA AATATATCAT GAAAACAGAT TAATCACCTG 85162 | | | | | .......... .......... .......... .......... ........AA TTAGCTGAGG 303 TTTTGAAGCA GATCATACCT TCAATA-ATC AAAATATCAT AACCACAAAG TTCAGCTATT 85221 ||| |||| | | | | ||||| ||| |||| || || || TTTGAAAGCG GGCCTTGACA CCAATATATC AAAAAAT-AT AA........ .......... 344 AATTATCAAT ACAGCAACCG TTAATTAATC GATAAAAAGG AATATAAGAA AAACAAATCA 85281 .......... .......... .......... .......... .......... .......... 344 CATTCATGCA CCAAACGCAA ATCAAAATCG AAATAAGAAC AAACGCAATA CATAAAATTG 85341 .......... .......... .......... .......... .......... .......... 344 AGTCGATTTT AACCTTCCTG TGCTTGGCAT TGAGTTCCTT TGAAACGTTG GCCTTCTCAT 85401 .......... .......... .......... .......... .......... .......... 344 TCATAGTGCC GGTCGCCGGA GTTACCAGAA ATGGAGAAGC TATCGGAAAA TTATCGCCGA 85461 .......... .......... .......... .......... .......... .......... 344 TCTAATTCCT CGACCGCCGA TGAGTGTAGC TGGATGAGAA GAAGAGAAAT CGCAATCGCG 85521 .......... .......... .......... .......... .......... .......... 344 TTTTCGAATT GATCGTATGC ATTCAACAAA TGGTATTTAT AATTATTCAT TAAGTTTGCA 85581 .......... .......... .......... .......... .......... .......... 344 TAATTTAGTA ATAATTTTTA ATTACTAGTA AATTTTTATT TGTCTTTTTC TCTTTTTTGG 85641 .......... .......... .......... .......... .......... .......... 344 AAAATATACC AAACTCTGGT ATAATATCTC TTCGGAAACT TACATAAATA TACTGTAATA 85701 .......... .......... .......... .......... .......... .......... 344 AAAAAATATT TATCATTTAT GGTAATATTA TTATTATTTT TTCACTTGAC CACTTTTAAT 85761 .......... .......... .......... .......... .......... .......... 344 TTAGGGAAAC TTACATAAAT ATACTAAAAT AAAAAAATAT TTACCATTTA TAGCAATAAT 85821 |||||||| |||||||||| |||||| | | |||||||||| |||||||||| ||||||||| ..AGGGAAAC TTACATAAAT ATACTATATT AAAAAAATAT TTACCATTTA TAGCAATAAC 402 ATCTTTTTTT CACTTGATCA CTTTTAATTC ATTTTTAATA CAAGTT-TAA TACATATTAC 85880 || || |||| ||||||||| |||||||| | | || ||||| ||||| ||| |||||||||| AT-TTGTTTT TACTTGATCA CTTTTAATAC A-TTATAATA -AAGTTCTAA TACATATTAC 459 AAATAACAAT TTATTATTCA TATATAATAC AAATTTTAAT AATGGATAAT ACATTTATCG 85940 |||||| ||||||||| | || ||| ||| | | ||| ||||| ||||||||| GGGGAACAAT TTATTATTC- -ACAT-ATA- AAA---T--T GATGAATAAT ACATTTATCA 510 CACATTTTAA TACACTTATA ATACAATATG TCAAATTTTT ACCAAACAAA CATAATATAT 86000 | |||||||| ||||||| || | ||||| || || | || || ||||||||| |||||||||| CTCATTTTAA TACACTTGTA ACACAATGTG TC-ATTTCTT ACCAAACAAG CATAATATAT 569 TTCAAAAAAC AATTATAATT CATATATATT GCATACATAA TTCACTTTTA ATTCATATTG 86060 || ||||| | | ||||| |||||||||| |||||||| | |||||| | | || ||||||| TTTTAAAAAA AGTCATAATA CATATATATT GCATACAT-A TTCACTGTAA ATGCATATTG 628 TAGATTTAAC ATAGCATTGT TATAAATGGT AATAAATAAA AAGTATTGCT AAAATCAGTA 86120 ||||||||| |||| CAGATTTAAC ATAGT..... .......... .......... .......... .......... 643 ATTATTTATT AAAATGTACT AATTTATGTA ATTTTTCCTT TAATATTTAT TTATAATACA 86180 .......... .......... .......... .......... .......... .......... 643 AGTTTAGTAT ATATTATAAA GAACAATTAT TATTCACATA TAATACAAGT TTTAATGATG 86240 .......... .......... .......... .......... .......... .......... 643 GATAATACAT TTATCACACA TTTTAATACA CTTATTATCA ATGTGACAAT TTTTTATCAA 86300 .......... .......... .......... .......... .......... .......... 643 ACAAACATAA TATATTTCAA AATCAATTAT AATTCAAATA CATTGCATAC ATAATTCATT 86360 .......... .......... .......... .......... .......... .......... 643 TTTAATATAT TTTACAGATT TGTCATAATA TTACTA-TAA ATGGTAATAA ACAAAAAATA 86419 | | || || || || || || |||||||||| | ||||| || .......... .......A-T TGCTAT-GTA TTGNTACNAA ATGGTAATAA ATAAAAAGTA 684 TCGCTAAAAT CAGTAATTAT TTTTTAAAAT GTATTAATTT ATGTAATTT 86468 |||||||||| |||||||||| || ||||||| ||||| || | ||||||| TCGCTAAAAT CAGTAATTAT TTATTAAAAT GTATTCATCC AAGTAATTT 733 hqPGS_C10SLe0045H11.1+_SGN-E213530+ (82705 82771,83461 83466,84850 84860,84992 85087,85151 85203,85764 86075,86378 86468) ******************************************************************************** EST sequence 34 +strand 693 n (File: SGN-E395471+) 1 TTTTTTTTTT TTATAATAAT AATTTTTTTT TACTTGACTA CATTTAATAC ATTATAATGC 61 AAGTTTAATA CATACTACAA AGATAAATTT ATTGATCAAA TATAATACAA GTTTAATTGA 121 TAGATAATAC ATTTATCACA CGTTTTAATA AACTTATAAT ACAATGTGAC AATTTCTTAC 181 CAAACAAACA TAATATATTT CAAAAAACAA TTATAACTCA AATATATTGC AAACATAATT 241 CACTTTTAAT ACATATTTAT CACAATATTG TTATAAATGA TAATAAATAA AAAAATATCG 301 CTAAAATCAA TAATTATTTT TAAAAATGAA TTTATTCATG TAATTTTTCC TATTTGCAGA 361 TACTAAAATA TAATTTGTGC CCAACAAGCT AATTATTACT TGCGCTGAAT GGAAAAAAAC 421 TATTTCCTCA GATCTATTTT AGTGTTTTTG TAACCCCTCA TGACAAAGAA TGGTCGAAAA 481 GATGTCCTTA CTAAAATAAA AGATTAAGTG AACAAAAAAG TATTTTGGCA TTTTCCCTAA 541 AGGTGGTCCT CATGATGCCC CTATGAGCTT ACCCATGATA TGATACCCTC TTTCTCTAAA 601 GTATGCTAGC TAGTCTCATG CAAGTCATTA AGTACTTCAT TGATCTTTAC CATAGTTGAC 661 CTTGCACTTG CTCCACTTTA ATGAATAACA AAA Predicted gene structure (within gDNA segment 83619 to 91092): Exon 1 85801 86056 ( 256 n); cDNA 1 254 ( 254 n); score: 0.844 Intron 1 86057 86377 ( 321 n); Pd: 0.000 (s: 0.92), Pa: 0.330 (s: 0.83) Exon 2 86378 86492 ( 115 n); cDNA 255 368 ( 114 n); score: 0.796 Intron 2 86493 88928 (2436 n); Pd: 0.000 (s: 0.72), Pa: 0.626 (s: 0) Exon 3 88929 88940 ( 12 n); cDNA 369 380 ( 12 n); score: 0.833 MATCH C10SLe0045H11.1+ SGN-E395471+ 0.829 383 0.553 C PGS_C10SLe0045H11.1+_SGN-E395471+ (85801 86056,86378 86492,88929 88940) Alignment (genomic DNA sequence = upper lines): TTTACCATTT ATAGCAATAA TATCTTTTTT TCACTTGATC ACTTTTAATT CATTTTTAAT 85860 ||| ||| || ||||| || |||||| | |||||| || |||||| || || |||| TTTTTTTTTT TTA-TAATAA TAATTTTTTT TTACTTGACT ACATTTAATA CA-TTATAAT 58 ACAAGTTTAA TACATATTAC AAATAACAAT TTATTATTCA TATATAATAC AAATTTTAAT 85920 ||||||||| |||||| ||| ||| | ||| ||||| ||| ||||||||| || ||| | | GCAAGTTTAA TACATACTAC AAAGATAAAT TTATTGATCA AATATAATAC AAGTTTAATT 118 AATGGATAAT ACATTTATCG CACATTTTAA TACACTTATA ATACAATATG TCAAATTTTT 85980 || |||||| ||||||||| ||| |||||| || ||||||| ||||||| || ||| || || GATAGATAAT ACATTTATCA CACGTTTTAA TAAACTTATA ATACAATGTG ACAATTTCTT 178 ACCAAACAAA CATAATATAT TTCAAAAAAC AATTATAATT CATATATATT GCATACATAA 86040 |||||||||| |||||||||| |||||||||| |||||||| | || ||||||| ||| |||||| ACCAAACAAA CATAATATAT TTCAAAAAAC AATTATAACT CAAATATATT GCAAACATAA 238 TTCACTTTTA ATTCATATTG TAGATTTAAC ATAGCATTGT TATAAATGGT AATAAATAAA 86100 |||||||||| || ||| TTCACTTTTA ATACAT.... .......... .......... .......... .......... 254 AAGTATTGCT AAAATCAGTA ATTATTTATT AAAATGTACT AATTTATGTA ATTTTTCCTT 86160 .......... .......... .......... .......... .......... .......... 254 TAATATTTAT TTATAATACA AGTTTAGTAT ATATTATAAA GAACAATTAT TATTCACATA 86220 .......... .......... .......... .......... .......... .......... 254 TAATACAAGT TTTAATGATG GATAATACAT TTATCACACA TTTTAATACA CTTATTATCA 86280 .......... .......... .......... .......... .......... .......... 254 ATGTGACAAT TTTTTATCAA ACAAACATAA TATATTTCAA AATCAATTAT AATTCAAATA 86340 .......... .......... .......... .......... .......... .......... 254 CATTGCATAC ATAATTCATT TTTAATATAT TTTACAGATT TGTCATAATA TTACTATAAA 86400 ||| | ||| |||| || |||||| .......... .......... .......... .......ATT TATCACAATA TTGTTATAAA 277 TGGTAATAAA -CAAAAAATA TCGCTAAAAT CAGTAATTAT TTTTTAAAAT GTATTAATTT 86459 || ||||||| |||||||| |||||||||| || ||||||| |||| ||||| | ||| ||| TGATAATAAA TAAAAAAATA TCGCTAAAAT CAATAATTAT TTTTAAAAAT GAATTTATTC 337 ATGTAATTTT TCTTGTCTTT TTTAGTAGTA ACAATTTTCT CAATACCAAG TAGAGCTGTT 86519 |||||||||| || | | || | || || | | ATGTAATTTT TCCTAT-TTG CAGA-TACTA AAA....... .......... .......... 368 AAAATGGGCT GACCCAACCC AATTTTAACG GGTTGGAAAG TTAAATGGGT TGGGGTGGGT 86579 .......... .......... .......... .......... .......... .......... 368 TTACCCTTTT AGTTAAAGGG CCAATAAAAT AGCAGCCAAT TCAGCGCTTA GCGGGCCACG 86639 .......... .......... .......... .......... .......... .......... 368 GGTTGGGGCA GGTGACTCTT TAACCAAAAA ATGAACAAAA TTATTCTCTT AGAAGGAGTA 86699 .......... .......... .......... .......... .......... .......... 368 TCTAAAAAAA TCAAATGTTG ACGTCTATAA ACAGGACATC AATACATACA AATTTTCATT 86759 .......... .......... .......... .......... .......... .......... 368 TATAAATCAC ACTTCAACAA ATACTTATAT AAGTACATTT ATGAATCTCA CACTTTGATG 86819 .......... .......... .......... .......... .......... .......... 368 AATGCTTACC AAGATACATA ATAGTCAACG TAAGATTTAG CGGAAAAATG TTGATCATTC 86879 .......... .......... .......... .......... .......... .......... 368 AAACATTCTT CTCAAACAAA AAAAAAACTA GGTTAAAAGA CTTGATTTTT TTATGGTTGT 86939 .......... .......... .......... .......... .......... .......... 368 AACATATTTA ATGATAAAAC ATTTACAAAT AAAACACTAC TAAATATATA TGTATATATA 86999 .......... .......... .......... .......... .......... .......... 368 ATATTTTTAA ATATTCATGG CCCACGGGCT GGCCTCTGAG GCTAGCGGGC CAAGTGAGGC 87059 .......... .......... .......... .......... .......... .......... 368 TGGGCTAAAA AGTTTCGTTC CTAAATGGGT CAAAAAAATT AGGCCCAACC CCACTTAATT 87119 .......... .......... .......... .......... .......... .......... 368 CAAAGGTTGG GTTGGATCGA CCTCGCAGGT CAAGCTCATT TTGACGACTC TAATACCAAG 87179 .......... .......... .......... .......... .......... .......... 368 GCTCAAACTC GAAATTTTTT GTTAAAGGTG AAACATTCCA TCAGTGCGCG ACTATAAATG 87239 .......... .......... .......... .......... .......... .......... 368 TTGGTAACTC TCGTATAATA TCAATACTCC CTCCAGTTCA CAAAGAATGA TTTAGTTTGA 87299 .......... .......... .......... .......... .......... .......... 368 CTTGACACAG AGTTTAAGAA AATAGACAAG ATTTTTGATC ATGTGGTCAT AAATTAAAGT 87359 .......... .......... .......... .......... .......... .......... 368 TATGTCAAAT ATACAAAATT GTCCTGTAAT CTTGTGGCCT TAAAAATGTC ACGTGGAGTA 87419 .......... .......... .......... .......... .......... .......... 368 TTATATTTTG GTAGACCATA TTTTTTCATT ACCATAATGT TTATACAATA TTACTATACA 87479 .......... .......... .......... .......... .......... .......... 368 CTAAGAAGTG TGTTTATGTA TTTTATTCTT AATTAGGTTC ATAACCCCTT TTTATCAAGT 87539 .......... .......... .......... .......... .......... .......... 368 ATTGAGTTGC TAATGAAAAT TTGAATTATT ATCTTTTCAT GACTTCGATT ATCAATTATT 87599 .......... .......... .......... .......... .......... .......... 368 TTATTTATCT ATTTAAATCA TCAGCGAAGA TAATAATAAA TGTTCCATAT AATTAGTTGG 87659 .......... .......... .......... .......... .......... .......... 368 GTAAGTGTTA ACTAACTTGA ATATTATGAT TATAAAAATA TGAGAAAAAA AGATAAATAT 87719 .......... .......... .......... .......... .......... .......... 368 ACCTCGAACT ATTGTAAATA TTATGCACAT ATCTTTCGTC ATATTTGGAA ATATTAATGT 87779 .......... .......... .......... .......... .......... .......... 368 CTTGTCGTGC AAAAACTAGA ACATATTTAC ATTTTTCGTT AATTATAAAA ATGTTTGCAT 87839 .......... .......... .......... .......... .......... .......... 368 TGAATCGAAC TCTTAAGATT TTAGCTGCTT CAGCCTATGA TGCAACGCAA AGTCAAAAAA 87899 .......... .......... .......... .......... .......... .......... 368 TATATAATAC ATTGCTAAAT TTGGAAACCA TTAACTATTT ATCTTTTGGA GTTTTGACCA 87959 .......... .......... .......... .......... .......... .......... 368 AACTAAGCCA TCGTATAAAG TAATTCACCA AAATAATACG TTTTTTTTTA AATTTTACAA 88019 .......... .......... .......... .......... .......... .......... 368 AACTAGTATA CACATGTTCA CAGTAACGTT TTAGGGTATA TTTTTTTTAA AAAAAACTGA 88079 .......... .......... .......... .......... .......... .......... 368 CGGCGTTAGA TTAATATACG TTACTCACAG TATAATGTTA TTTACAGTAA CATATATCAA 88139 .......... .......... .......... .......... .......... .......... 368 CCTGACGCCA TTAGTTTTGA AAAATGAAAT ATACCCTAAA ACGTCACTGT GAAATACTTT 88199 .......... .......... .......... .......... .......... .......... 368 TATACTAGTT TTGTAAAGTT TTAAAAAATG TATTATTTTA TATAATGACT TAATTTGGTA 88259 .......... .......... .......... .......... .......... .......... 368 AAAAATTCTA CCTTTTCTCC CTTAATTCTT CCTTTTGTGA AACTAGGAAA ATATAAGGAA 88319 .......... .......... .......... .......... .......... .......... 368 TTTCGTCTTT TTTGCAAATG TTATGGAATG TTTAAAGCCA CAAGTTTCTA AAGTTAATAT 88379 .......... .......... .......... .......... .......... .......... 368 AGCCATGCAA ATACAAATGA AATGTGAAAG ACTACAAGTT TCAAAACTTT CATTTCTTTC 88439 .......... .......... .......... .......... .......... .......... 368 ATAAAATCTG TCTCGATCCA AATTGTGTCA TGTAAATTGG AACGGAGAGA GTGATATTGT 88499 .......... .......... .......... .......... .......... .......... 368 ACAAGCTATT GTATAGTGTT ATCAAAGACG CGCTTTAAGT GCACTTAAGT CCTGAAGCGA 88559 .......... .......... .......... .......... .......... .......... 368 GGCTCAAAAC ATGTTAAGCG CTTCGCCTCA CTTTATATCG TCATCAAGGT TCTAAGATAA 88619 .......... .......... .......... .......... .......... .......... 368 TGTTTCCTTG CCAATAATCC TCTTCAGACA CTAAATAGTT GATGTTTTAC TTTTTCATAA 88679 .......... .......... .......... .......... .......... .......... 368 TTTTTTTTTT AATTTCTTTG GTTATATATT TATCATTCAT GTTTATAAAT ATTAGACTGT 88739 .......... .......... .......... .......... .......... .......... 368 GAACTAAACA TATATATTTG TATTCTTTTC TCCGTGCCTT TTTTCATTGG TATCAACTAA 88799 .......... .......... .......... .......... .......... .......... 368 ATGCATTACA AGGTGTTTTT GAATACAATA TGCTGGACCC ATATTTCTTG ACTTATGGAT 88859 .......... .......... .......... .......... .......... .......... 368 TGGTTAATCA ATCATGCTTT TTTATGTGTT TTTGAATAGT GAAAATTTTT GGTCCACACA 88919 .......... .......... .......... .......... .......... .......... 368 CTTAAATAGT ACAATTCGTG C 88940 | | |||| ||| | .........T ATAATTTGTG C 380 hqPGS_C10SLe0045H11.1+_SGN-E395471+ (85801 86056,86378 86492) ******************************************************************************** EST sequence 38 -strand 774 n (File: SGN-E542725-) 1 ATTTTAAAAC AGACCCACAA ACACTGCAGC TTACTAGCTT TAGTTTTATG TCTTTAACTT 61 TTGTTTTCAA GATTCTTGCT TCACACTTAT TATTCAACTA TTTCATACTT GGGTTTTTCT 121 AAAGACTTCA TTTTTAGCTT TAAAAAAAAA CTTTTTTTTT TTTGGGTTTT GCGTATGGAG 181 TATTAAGAGG AAGATTATGC TGTATTAGGG CTTGATTAGA GGTAAGGATT TTAGGAATGG 241 AGTCGAAGAT TTGCATGAAT GGACTGTGTG GGACAACTTC TTCAATTGAG TGGAAAAAAG 301 GGTGGCCTTT GCGATCTGGT GAATTTGCGA CCCTCTGTGA TAAGTGCGGG GAGGTTTTTC 361 TTGGCTGAGA TCAGGAGCAT GGGCTTATGA TCTAAGTGAG GCCGTTGAAG CGAGCCAGAA 421 TTTTTAATAA GGGGGTTCAG AATCTGAAGA AATAAACACA TGAAGTAGCC GAAGGGGGTT 481 CGACATCTAT CGTATATACC TAAAAATTTA TTTTAACCAT GTAACAATAA TATAATTTTC 541 CGCCGAAGGG GGTTCGGATG AATCCCTAGT GATAAGGTGG CTCCGCCCCT GTGTTGAAGT 601 GATGGCATAA CTTTTTTTTT CTTTCCAGAA TTGTCTATTT GGTTCCATGT TAAGTTACTG 661 TGGAGCAACT TTGTCTTTTT TTGCTCTTTT TGGCCTTTAT ATGAAATAGA GATTGCATGC 721 AGTGATTTCA CTTACAGTAA ATAATACAGT GCTGATGGAA TGAAAAAAAA AAAA Predicted gene structure (within gDNA segment 95405 to 87612): Exon 1 90206 90043 ( 164 n); cDNA 422 590 ( 169 n); score: 0.747 PPA cDNA 763 774 MATCH C10SLe0045H11.1- SGN-E542725- 0.747 164 0.212 C PGS_C10SLe0045H11.1-_SGN-E542725- (90206 90043) Alignment (genomic DNA sequence = upper lines): TTTCAATAA- GAGGTTCAAA ATTAATAGAA TTAGACACAT GGAGTAGCCG AAGGGGGTTC 90148 ||| ||||| | |||||| | || |||| || |||||| | |||||||| |||||||||| TTTTAATAAG GGGGTTCAGA ATCTGAAGAA ATAAACACAT GAAGTAGCCG AAGGGGGTTC 481 GACATCTATC TTATATAGAA AAAATATTAT TTTAACCATG T----ATAAT -TAATTTTCC 90093 |||||||||| |||||| |||| |||| |||||||||| | ||||| ||||||||| GACATCTATC GTATATACCT AAAAATTTAT TTTAACCATG TAACAATAAT ATAATTTTCC 541 ATAGAAGGGG GTTCGGATGA ACCCCT-GTA ACCAAAGGTG GCTCCGCCCC T 90043 ||||||| |||||||||| | |||| || | |||||| |||||||||| | GCCGAAGGGG GTTCGGATGA ATCCCTAGTG A--TAAGGTG GCTCCGCCCC T 590 hqPGS_C10SLe0045H11.1-_SGN-E542725- (90206 90043) ******************************************************************************** EST sequence 48 -strand 369 n (File: SGN-E301580-) 1 TTTTAATAAG GGGGTTCAGA ATCTGAAGAA ATAAACACAT GAAGTAGCCG AAGGGGGTTC 61 GACATCTATC GTATATACCT AAAAATTTAT TTTAACCATG TAACAATAAT ATAATTTTCC 121 GCCGAAGGGG GTTCGGATGA ATCCCTAGTG ATAAGGTGGC TCCGCCCCTG TGTTGAAGTG 181 ATGGCATAAC TTTTTTTTTC TTTCCAGAAT TGTCTATTTG GTTCCATGTT AAGTTACTGT 241 GGAGCAACTT TGTCTTTTTT TGCTCTTTTT GGCCTTTATA TGAAATAGAG ATTGCATGCA 301 GTGATTTCAC TTACAGTAAA TAATACAGTG CTGATGGAAT GAAAAAAAAA AAACCTCGTG 361 CCGAATTCC Predicted gene structure (within gDNA segment 91195 to 87452): Exon 1 90206 90043 ( 164 n); cDNA 1 169 ( 169 n); score: 0.747 PPA cDNA 342 354 MATCH C10SLe0045H11.1- SGN-E301580- 0.747 164 0.444 C PGS_C10SLe0045H11.1-_SGN-E301580- (90206 90043) Alignment (genomic DNA sequence = upper lines): TTTCAATAA- GAGGTTCAAA ATTAATAGAA TTAGACACAT GGAGTAGCCG AAGGGGGTTC 90148 ||| ||||| | |||||| | || |||| || |||||| | |||||||| |||||||||| TTTTAATAAG GGGGTTCAGA ATCTGAAGAA ATAAACACAT GAAGTAGCCG AAGGGGGTTC 60 GACATCTATC TTATATAGAA AAAATATTAT TTTAACCATG T----ATAAT -TAATTTTCC 90093 |||||||||| |||||| |||| |||| |||||||||| | ||||| ||||||||| GACATCTATC GTATATACCT AAAAATTTAT TTTAACCATG TAACAATAAT ATAATTTTCC 120 ATAGAAGGGG GTTCGGATGA ACCCCT-GTA ACCAAAGGTG GCTCCGCCCC T 90043 ||||||| |||||||||| | |||| || | || |||| |||||||||| | GCCGAAGGGG GTTCGGATGA ATCCCTAGTG A-TAA-GGTG GCTCCGCCCC T 169 hqPGS_C10SLe0045H11.1-_SGN-E301580- (90206 90043) ******************************************************************************** EST sequence 112 +strand 752 n (File: SGN-E542724+) 1 CGGGCCCCCC TCGAGTTTTT TTTTTTTTTT TTTGACTGTT TTACACTTTA CGCTTCTCTC 61 TCTCTCCCAA TTCCACCGTT CCGGTACCGG AAATTCAACA AACTTCCCTA ATATTTCTCT 121 ATCACAAATT TTAAAACAGA CCCACAAACA CTGCAGCTTA CTAGCTTTAG TTTTATGTCT 181 TTAACTTTTG TTTTCAAGAT TCTTGCTTCA CACTTATTAT TCAACTATTT CATACTTGGG 241 TTTTTCTAAA GACTTCATTT TTAGCTTTAA AAAAAAACTT TTTTTTTTTT GGGTTTTGCG 301 TATGGAGTAT TAAGAGGAAG ATTATGCTGT ATTAGGGCTT GATTAGAGGT AAGGATTTTA 361 GGAATGGAGT CGAAGATTTG CATGAATGGA CTGTGTGGGA CAACTTCTTC AATTGAGTGG 421 AAAAAAGGGT GGCCTTTGCG ATCTGGTGAA TTTGCGACCC TCTGTGATAA GTGCGGGGAG 481 GTTTTTCTTG GCTGAGATCA GGAGCATGGG CTTATGATCT AAGTGAGGCC GTTGAAGCGA 541 GCCAGAATTT TTAATAAGGG GGTTCAGAAT CTGAAGAAAT AAACACATGA AGTAGCCGAA 601 GGGGGTTCGA CATCTATCGT ATATACCTAA AAATTTATTT TAACCATGTA ACAATAATAT 661 AATTTTCCGC CGAAGGGGGT TCGGATGAAT CCCTAGTGAT AAGGTGGCTC CGCCCCTGTG 721 TTGAAGTGAT GGCATAACTT TTTTTTTCTT TC Predicted gene structure (within gDNA segment 96665 to 88492): Exon 1 90206 90067 ( 140 n); cDNA 549 694 ( 146 n); score: 0.750 PPA cDNA 33 15 MATCH C10SLe0045H11.1- SGN-E542724+ 0.750 140 0.186 C PGS_C10SLe0045H11.1-_SGN-E542724+ (90206 90067) Alignment (genomic DNA sequence = upper lines): TTTCAATAA- GAGGTTCAAA ATTAATAGAA TTAGACACAT GGAGTAGCCG AAGGGGGTTC 90148 ||| ||||| | |||||| | || |||| || |||||| | |||||||| |||||||||| TTTTAATAAG GGGGTTCAGA ATCTGAAGAA ATAAACACAT GAAGTAGCCG AAGGGGGTTC 608 GACATCTATC TTATATAGAA AAAATATTAT TTTAACCATG T----ATAAT -TAATTTTCC 90093 |||||||||| |||||| |||| |||| |||||||||| | ||||| ||||||||| GACATCTATC GTATATACCT AAAAATTTAT TTTAACCATG TAACAATAAT ATAATTTTCC 668 ATAGAAGGGG GTTCGGATGA ACCCCT 90067 ||||||| |||||||||| | |||| GCCGAAGGGG GTTCGGATGA ATCCCT 694 hqPGS_C10SLe0045H11.1-_SGN-E542724+ (90206 90067) ******************************************************************************** EST sequence 134 -strand 350 n (File: SGN-E229471-) 1 TATGTATCGG GCAATGTTTT CATTGTCGAT AGTGAAGCTA CCTTAATAGG CGTGCCAATA 61 TTCTCGTCAC TCTAAAAGGA TAGAGGTACA AACAAATTGA AACGAAGGGA GTAACAAATA 121 GAAGAGAAAG GCAACATATG CTTAATATTT ATTATCTGTG AATGGATACA ATTATAGTGC 181 TTTTACAAAT ACATATTCAT ATGACTATCT ATCAGATGCA ATGTATCACC TAACAATGGA 241 AACAATACTA CAACTTGCAG TATTTGAACG ATGATTTTCA TCGTATATGC TAGGTACATC 301 AATGAAAAAC AATACACACT CGAAAAAAAA AAAAAAAAAA CTCGAGACTA Predicted gene structure (within gDNA segment 90212 to 91996): Exon 1 90822 91146 ( 325 n); cDNA 1 325 ( 325 n); score: 0.997 PPA cDNA 326 341 MATCH C10SLe0045H11.1+ SGN-E229471- 0.997 325 0.929 C PGS_C10SLe0045H11.1+_SGN-E229471- (90822 91146) Alignment (genomic DNA sequence = upper lines): TATGTATCGG GCAATGTTTT CATTGTCGAT AGTGGAGCTA CCTTAATAGG CGTGCCAATA 90881 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TATGTATCGG GCAATGTTTT CATTGTCGAT AGTGAAGCTA CCTTAATAGG CGTGCCAATA 60 TTCTCGTCAC TCTAAAAGGA TAGAGGTACA AACAAATTGA AACGAAGGGA GTAACAAATA 90941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCGTCAC TCTAAAAGGA TAGAGGTACA AACAAATTGA AACGAAGGGA GTAACAAATA 120 GAAGAGAAAG GCAACATATG CTTAATATTT ATTATCTGTG AATGGATACA ATTATAGTGC 91001 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGAAAG GCAACATATG CTTAATATTT ATTATCTGTG AATGGATACA ATTATAGTGC 180 TTTTACAAAT ACATATTCAT ATGACTATCT ATCAGATGCA ATGTATCACC TAACAATGGA 91061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTACAAAT ACATATTCAT ATGACTATCT ATCAGATGCA ATGTATCACC TAACAATGGA 240 AACAATACTA CAACTTGCAG TATTTGAACG ATGATTTTCA TCGTATATGC TAGGTACATC 91121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAATACTA CAACTTGCAG TATTTGAACG ATGATTTTCA TCGTATATGC TAGGTACATC 300 AATGAAAAAC AATACACACT CGAAA 91146 |||||||||| |||||||||| ||||| AATGAAAAAC AATACACACT CGAAA 325 hqPGS_C10SLe0045H11.1+_SGN-E229471- (90822 91146) ******************************************************************************** EST sequence 139 +strand 408 n (File: SGN-E274173+) 1 CTAGCTGAAT TTCGAACAGA AATTGAAATG TTATCCAAGC TTCGCCACCG CCATCTTGTG 61 TCTTTGATTG GTTATTGTGA TGAAAGATCA GAAATGATTT TGGTTTATGA ATACATGGCA 121 AATGGGCCTC TCCGAAGTCA TCTTTATGGA ACGGATCTTC CATCTCTTTC GTGGAAGCAG 181 CGTCTTGAGA TTTGTATAGG TGCTGCTAGG GGGCTGCATT ACCTCCACAC TGGTGCATCA 241 CAGAGCATCA TTCACCGTGA TGTGAAAACT ACAAACATAC TCTTGGACGA GAACTTTGTA 301 GCTAAAGTTG CTGATTTTGG TCTTTCTAAA GCTGGGCCAG CTATTGATCA GACGCATGTC 361 AGCACTGCTG TTAAAGGTAG CTTTGGTTAC CTGGATCCCG AGTACTTT Predicted gene structure (within gDNA segment 93674 to 90698): Exon 1 92129 91723 ( 407 n); cDNA 1 407 ( 407 n); score: 0.885 MATCH C10SLe0045H11.1- SGN-E274173+ 0.885 407 0.998 C PGS_C10SLe0045H11.1-_SGN-E274173+ (92129 91723) Alignment (genomic DNA sequence = upper lines): CTAGCTGAAT TTCAAACTGA GATTGAAATG TTGTCCAAAC TTCGCCACCG TCACCTCGTG 92070 |||||||||| ||| ||| || ||||||||| || ||||| | |||||||||| || || ||| CTAGCTGAAT TTCGAACAGA AATTGAAATG TTATCCAAGC TTCGCCACCG CCATCTTGTG 60 TCTTTGATTG GTTATTGTGA TGAGAGGTCT GAAATGATTC TTGTATATGA ATACATGGCA 92010 |||||||||| |||||||||| ||| || || ||||||||| | || ||||| |||||||||| TCTTTGATTG GTTATTGTGA TGAAAGATCA GAAATGATTT TGGTTTATGA ATACATGGCA 120 AATGGTCCTC TCAGAAGTCA TCTTTATGGA ACAGATCTCC CACCTCTCTC GTGGAAGCAG 91950 ||||| |||| || ||||||| |||||||||| || ||||| | || |||| || |||||||||| AATGGGCCTC TCCGAAGTCA TCTTTATGGA ACGGATCTTC CATCTCTTTC GTGGAAGCAG 180 CGTCTTGAGA TTTGTATCGG TGCTGCAAGA GGGCTGCATT ACCTCCACAC AGGTGCAGCT 91890 |||||||||| ||||||| || |||||| || |||||||||| |||||||||| |||||| | CGTCTTGAGA TTTGTATAGG TGCTGCTAGG GGGCTGCATT ACCTCCACAC TGGTGCATCA 240 CAGAGCATCA TTCACCGCGA TGTCAAAACC ACCAACATAC TTTTGGATGA TAACTTTTTG 91830 |||||||||| ||||||| || ||| ||||| || ||||||| | ||||| || |||||| | CAGAGCATCA TTCACCGTGA TGTGAAAACT ACAAACATAC TCTTGGACGA GAACTTTGTA 300 GCTAAAGTTG CTGACTTTGG TCTTTCTAAA GCCGGACCAG CTCTAGATCA GACGCATGTC 91770 |||||||||| |||| ||||| |||||||||| || || |||| || | ||||| |||||||||| GCTAAAGTTG CTGATTTTGG TCTTTCTAAA GCTGGGCCAG CTATTGATCA GACGCATGTC 360 AGTACTGCCG TTAAGGGTAG CTTTGGGTAC CTTGATCCTG AATACTT 91723 || ||||| | |||| ||||| |||||| ||| || ||||| | | ||||| AGCACTGCTG TTAAAGGTAG CTTTGGTTAC CTGGATCCCG AGTACTT 407 hqPGS_C10SLe0045H11.1-_SGN-E274173+ (92129 91723) ******************************************************************************** EST sequence 83 +strand 580 n (File: SGN-E204223+) 1 ATGGTCTTCT TTGGTTAGGA GGGCCAATAA AAATTGAAAT GAAAACAGGA AGGAAAGATA 61 GCAAGGAAAC TTACTTTTCA GAAGTTGAGA AGTACCTCCC TAATCACAAC GATTCAATCT 121 CATCTGTGCT TTCAAGATTT CAATCAATTG GTGTTGATAC TGAAGGAACT GTTGCTCTAC 181 TTGGTAATCA ACTCTCTAAA CTCTCGTTTA ATCATAAATT TTTTAAAAAT AATTAATTAT 241 ACAAAATTAT GTTTATTTTG ATCGAAAAAT TCATGTAGAG TTCATTCTTA GGGCCCGTTT 301 GGATGGACTT AGCTTTAAAA AAGTACTTTT AAAAGTTATG CATTTGGATA AAAGTGTTGA 361 AGTTGCTATG CCAAACGTGA AAATGGAAAA ATGGAAGAAA GAGATGTTAG AGTTATGTGG 421 ATAATTTGGA GATTGTATAA AAATATTAAG GGCAAAAAGA TAAAAATGTG GTCAACTTAA 481 AACAGCTTAT AAGCTAAAAA AAAAGCACCC CTACCCCAGC TTTTAACTTT TGGCTTAAAA 541 TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA Predicted gene structure (within gDNA segment 101545 to 95512): Exon 1 100735 100681 ( 55 n); cDNA 203 254 ( 52 n); score: 0.709 Intron 1 100680 99454 (1227 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0) Exon 2 99453 99421 ( 33 n); cDNA 255 287 ( 33 n); score: 0.667 Intron 2 99420 96558 (2863 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 3 96557 96534 ( 24 n); cDNA 288 311 ( 24 n); score: 0.875 Intron 3 96533 96500 ( 34 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.68) Exon 4 96499 96230 ( 270 n); cDNA 312 580 ( 269 n); score: 0.856 MATCH C10SLe0045H11.1- SGN-E204223+ 0.831 382 0.659 C PGS_C10SLe0045H11.1-_SGN-E204223+ (100735 100681,99453 99421,96557 96534,96499 96230) Alignment (genomic DNA sequence = upper lines): CTTATTTAAT GATTTTAAAT TTTTAAACTA TTTAAATATT TATAAAATTA TATTTTAAAA 100676 || |||||| | | | | ||| ||| || || ||| | || ||||||| | ||| CTCGTTTAAT CA-TAAATTT TTTAAAAATA ATT-AAT-TA TACAAAATTA TGTTT..... 254 AAGTGCATGA ATTAATTCGG GATGTATTAC TGCTTTAAAT TTAATCATAA ATTTCTAATT 100616 .......... .......... .......... .......... .......... .......... 254 CAATCTTGAA AGAGAATCAA ATTGAAATAA GCGGCTCAGC ATATGTTTAA TTGGGGATTC 100556 .......... .......... .......... .......... .......... .......... 254 GACTCTGACT CGAATAATTT TGGATGTCAT TTTCATTAAT TTATAATTTC ATTGTGTTTT 100496 .......... .......... .......... .......... .......... .......... 254 AGTAGTGTTT ATGACGATTT TGATATTATA GTTGAATTAT TAATTGAGTG AGGTTTAATT 100436 .......... .......... .......... .......... .......... .......... 254 AGTAATGGGT GGGTAGTGGA TTGATTTATA AATTACACTA ATAAGTTAAA TTATAACAAA 100376 .......... .......... .......... .......... .......... .......... 254 TAGTTGAGCG CCACGTATTT AAAAAAATAT TTAAATAGTT TAACTATAAA ATCGTTAAAT 100316 .......... .......... .......... .......... .......... .......... 254 AACTGGTCAA TTTTGAACCA AAAGGTAGGT GGAGAGTAAT TTTATATCAT TTCCAATACT 100256 .......... .......... .......... .......... .......... .......... 254 TTGAGGATAT TTTAGACCTT TTTCCGTTCC ATCTATTCGA TTCAAATGAT TGCAACAATA 100196 .......... .......... .......... .......... .......... .......... 254 AATAAAATTA TGATCGACGC AATTATCATT GTTATGATAA TCTACAACTT TTACTATGTG 100136 .......... .......... .......... .......... .......... .......... 254 CTTGTGGACC TATATAACTT GATATGTTGT TTTGAAGAGT TAAAATAACT AGCTAAAATG 100076 .......... .......... .......... .......... .......... .......... 254 AGTTGATTAA TTACACTAAT TATATATATA TATTTTTTTA TAAAAGTTAA TATATATTGT 100016 .......... .......... .......... .......... .......... .......... 254 GTAATTAAAA TGATTACACA ATATGTTTTG TAATCATTTT TGTACTTAAA AGAATGTTTT 99956 .......... .......... .......... .......... .......... .......... 254 ACTCCTTTAT ATGAAACTTC TCATTATTTA AATTTAATTA GATACCAACA AAAATATCGA 99896 .......... .......... .......... .......... .......... .......... 254 ATACCCAAAT AAAAAATAAA ATAAGTCTAG GGGAACTAAA AAAAAGTTTT AGTTGATGGA 99836 .......... .......... .......... .......... .......... .......... 254 GTATCGTCAT TTATTGGAGG AAATTACGTG GTGAATAACG TACATTGGTA CTTGTCTTCC 99776 .......... .......... .......... .......... .......... .......... 254 TCAAACTTAT TATTACGATA TAACAGACAT TTTATAGTTG ATTTGACATA AAATTTAGGG 99716 .......... .......... .......... .......... .......... .......... 254 AAAAGGGTCT GATAGACCCC TCAACTTTGT TATTTAGAGC TGATATATCC CTTGTTATGA 99656 .......... .......... .......... .......... .......... .......... 254 AAGTGACTCA TATATACCCC TATTTGTAAA CAAATGGCTC ACATATACCC TTTTCCTCTA 99596 .......... .......... .......... .......... .......... .......... 254 ACGGAAATGA AAAAAATAAT AATTTTAATC TAAATTTTTA TTATTTTTTT CTAAAAAATA 99536 .......... .......... .......... .......... .......... .......... 254 TAATACCATA TGAGTAAATT TAATCCTTGT CAAACATATT TTTTTTGACT TTTTTTGTTT 99476 .......... .......... .......... .......... .......... .......... 254 CAATGACTAA TTTATAATTA TTATTTTGAT AATCAAATTT ATTTATGTTT CACTAATATT 99416 |||||||| ||||| || || || || | .......... .......... ..ATTTTGAT CGAAAAATTC ATGTAGAGTT CATTC..... 287 CTTGTAAAAC TTATTGTAGA TGACCAAATT TTTTCTTCCA ATACGAAATT AAATTACAAT 99356 .......... .......... .......... .......... .......... .......... 287 ATACACAAAA AAAATAGTTT AATTTTTTAT TCTTTAAACT AAGGAATGAA AGAAAACAAC 99296 .......... .......... .......... .......... .......... .......... 287 AAAATAAGAA TAAGAAATTC AAATAATTAT AATAAAAGAA GTCAAAAAAT AATTTATGTA 99236 .......... .......... .......... .......... .......... .......... 287 TGAAAAAAAT TAAAATATAC CTTAAGCTTT GATAGAAGAA TAATATATAC CCCTAAATAA 99176 .......... .......... .......... .......... .......... .......... 287 TTTTTTTTTA AAAATTAGAA GTAATAAATA TAAATTTAAA ACTAATTTTT TAACTTCCGT 99116 .......... .......... .......... .......... .......... .......... 287 TAAATGAAGG GTATATGTGA GCCATTTTAT AACGGCAGGG GTATATGTGA GCCGTTTGTA 99056 .......... .......... .......... .......... .......... .......... 287 TAACGGTAAG GGCATATATA AGCCACTTTT ATAACGAGGG GTATATCAGC TCCAAATGTC 98996 .......... .......... .......... .......... .......... .......... 287 AAAGTTGAGG GGTATATCAG ACCCTTTTCC CTAAAATTTA ATAGCTAATG AGTTAATTTT 98936 .......... .......... .......... .......... .......... .......... 287 TTATATATCG TATTTCTTTC AAAATTTATA TTTGACATAT TACATATGAT TTAAAGTTAT 98876 .......... .......... .......... .......... .......... .......... 287 GGAGATAGAC ATCAATTGAT TTCTCTATGA GGTCAATTTA TTTAATTGTA TGATGTATAA 98816 .......... .......... .......... .......... .......... .......... 287 TGTACTCCAA TTAAATAAAA TTACATAACA CATAATTAAG GGATCGGAAT TTTAATTAAT 98756 .......... .......... .......... .......... .......... .......... 287 TAAGAATAAA ATAAAAGTTG ACAACAATAC TAATTAACCT AAATTTTTGT CTTTTTCTCC 98696 .......... .......... .......... .......... .......... .......... 287 ACATATATTT TAAAGGAAAT TTACATAAAT ATACTGTATT AAAATATTTA TCATTTATAG 98636 .......... .......... .......... .......... .......... .......... 287 CAATAATATT TTTTTGACTT GATCACTTTA ATATATTTAC AGTACAATTT TAATACATAT 98576 .......... .......... .......... .......... .......... .......... 287 TACAACGAAC AATTTGTTAT TCACATATAA TACAAGTTTT ATTGATGGTT AATATATCTA 98516 .......... .......... .......... .......... .......... .......... 287 TATCACATTT TAATACACTA ATAATATGAT GTGTCAATTT ATTGCCAAAC AAGCATAATA 98456 .......... .......... .......... .......... .......... .......... 287 TATTTTCAAA AACATTTATA ATACATATAT ATATTGCATA CATAATTCAT CTTTTAAATA 98396 .......... .......... .......... .......... .......... .......... 287 CGTTTTGTAT ATTTAACATT ATTTTGCTAT AAATGGTAAT AAATTAAAAG TATCGTTCAA 98336 .......... .......... .......... .......... .......... .......... 287 ATAAATAATT ATTTATTAAA ATATAATTTT TCCTATATTT TATTTGATGG GCCTAGTATG 98276 .......... .......... .......... .......... .......... .......... 287 ATCCCTAGCA GTCCCAACAA AGATTTTCTT TTTAAAGCCC AATTCTCTTT TGGGTTACTA 98216 .......... .......... .......... .......... .......... .......... 287 TTTTGCTGTA TCATAAAATT GGTATCAAAA TAACAAGACA GGAATTTATA GCTTAATTTG 98156 .......... .......... .......... .......... .......... .......... 287 GCTATTAAGA TTTTCTTATT TCCAGAATTC AAATTAAAAA ATAATATAGT ATCTTAATTT 98096 .......... .......... .......... .......... .......... .......... 287 ATAATTATTT ACGTTATTAA TATGAATATG CATAACACCT ATATTGTATA CCAATGTATA 98036 .......... .......... .......... .......... .......... .......... 287 ATAGATATAT AACATCTTAT ACCATATTAT ACTGTGTAGA TACTTCATTA TATTACTTAA 97976 .......... .......... .......... .......... .......... .......... 287 TATAAATGAT TGGAAAAGGT TTAATTTAGA GAGGGTGGAG TATACGAAAT TCTACCTCTA 97916 .......... .......... .......... .......... .......... .......... 287 TTTCATATAT GAAGAGGTTA TTTTCAATAA ACAATCGGTT CAAGAAAAAC GTAGATTGAA 97856 .......... .......... .......... .......... .......... .......... 287 AAAGAAATGA CAGTGGAGAA ATCATATCAA AATATTATAG CAAGCATGAC AAAGCAGATC 97796 .......... .......... .......... .......... .......... .......... 287 AAAAGAGGAC GGTGCGTCGG AGTAAGCCGG TGGCTGGCTC GTGTTCGCGG TGCGGACACG 97736 .......... .......... .......... .......... .......... .......... 287 GTGCTAAAGT GGCTGAGATG TATACATCAA CTAGATTTTG TTCTATTCCA CTGTATACCA 97676 .......... .......... .......... .......... .......... .......... 287 AGTCTTGGAA GGCTATTGTT TGTAGTTTTT GTGGTGCCAT TCTCAAATCC TATACATAAA 97616 .......... .......... .......... .......... .......... .......... 287 CTCATAACAA TAGGTGATGG GTGATTAGTT ATATTCCCTT TTTCTCGAGG TTGCGGAGGT 97556 .......... .......... .......... .......... .......... .......... 287 AAAATAGATC GATGAAGGAT GATTAGTTAA ACACCTTCTG ATAGAAAAAG AAGATAGTAT 97496 .......... .......... .......... .......... .......... .......... 287 GTATATCATG TATATAGGTA AAGTATTAGT CATGATTTGC ATGCAAATAT TTTGAAATAT 97436 .......... .......... .......... .......... .......... .......... 287 ATTTTTCCTC TTTTTTATTT GTACCTTTGA AATCATGATG ATCCGCTATG GTTTTTGATT 97376 .......... .......... .......... .......... .......... .......... 287 ATTATGATAA TATATGAGCT AGTTGAACAT AACGTAAATT CATACGGATT TGTTATGAGT 97316 .......... .......... .......... .......... .......... .......... 287 TACACGTTAC AGCTGTAACT CTGCATCATT TGTCATATTT GTCGTTCAAC TTGAGGATAT 97256 .......... .......... .......... .......... .......... .......... 287 TTTAGTCTGA AATATGTTCA TTAACCTAAT AGAGTCATTT TCAGACAAAA TTTAAAATTT 97196 .......... .......... .......... .......... .......... .......... 287 AGAGACGATA TATAAATAAC GGCCTAATGT ATATCTTTTC GTGCAAATCA CCCACTAGTT 97136 .......... .......... .......... .......... .......... .......... 287 TCGAGGGTCG AGTTATTAAA ACCAAACATA TTCGAATTTT TTTTTAATGT ACAATTGTTA 97076 .......... .......... .......... .......... .......... .......... 287 ATTTGAAAAT GGAATAAAAG ATGAGCAATT TGATAGAGGA AATAGTTAAT TTTTAGCCAA 97016 .......... .......... .......... .......... .......... .......... 287 TAATTTTTTT TCCTCCTAAA AATATAGAAA TATATGAAGA GGAAGGCAGA TGAGGACCCA 96956 .......... .......... .......... .......... .......... .......... 287 ACATTGTTGG TGGCCATGTG CATTTGTATA GAGGAAATGG ACAAAATAAA TAAATAAAAT 96896 .......... .......... .......... .......... .......... .......... 287 TATTAAGTAA TCAAATTTCT AAATTTTCAT TTTTGATTAT ATAAAATGCG TTTAAATTAG 96836 .......... .......... .......... .......... .......... .......... 287 CAGATTAAAA ATAATTGATA ATATCATATA TTAAAAAAAT CACGTATAGA TATTAAGTAT 96776 .......... .......... .......... .......... .......... .......... 287 TAAAAAGTAT TTTAAGCGTT GAGATTAATT TATCATGTAT GTTTATGCAT CATTACTCAA 96716 .......... .......... .......... .......... .......... .......... 287 TAGTAGAAAA AAAAAGAATT AAATTTTACA TTCAAAATTA AATAAAAAAG CTTATTAAAT 96656 .......... .......... .......... .......... .......... .......... 287 CGTCAGATCC CTAATCGCGA AATAAATTTA AAAAAAACAT TATTAAATTA CCAAATTCCT 96596 .......... .......... .......... .......... .......... .......... 287 AAAAACTCCC TTTTTGGCGA TGTAAAGCAT GTTTAGACTA AGGGTCCGTT TGGATGGGCT 96536 | |||| ||||| ||||||| || .......... .......... .......... ........TT AGGGCCCGTT TGGATGGACT 309 TAATAAAAGC AGCTTTAAAA AAGTACTTTT GAAAGTGCTG AAACTTATTT TTAAAAAAAG 96476 || ||| || | | | ||||| TA........ .......... .......... ......GCTT TAAAAAAGTA CTTTTAAAAG 335 CAATTATGCG TTTGGATAAA AGTGCTGAAG TTGTTATGTC AAATGTGAAA A-AGAAAAAT 96417 |||||| |||||||||| |||| ||||| ||| |||| | ||| |||||| | ||||||| ---TTATGCA TTTGGATAAA AGTGTTGAAG TTGCTATGCC AAACGTGAAA ATGGAAAAAT 392 AGAAGAAAGA GATGTTAGGG TTATATGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG 96357 ||||||||| |||||||| | |||| ||| | |||||||||| |||||||||| |||||||||| GGAAGAAAGA GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG 452 AAAAAACATA AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAGCACCC 96297 ||||| ||| |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| CAAAAAGATA AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC 510 CTACCCCAGC TTTTAACTTT TGGCTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGCT 96240 |||||||||| |||||||||| |||||||||| |||| ||| |||||||||| |||||||| | CTACCCCAGC TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT 570 ATTTTGAGTA 96230 |||||||||| ATTTTGAGTA 580 hqPGS_C10SLe0045H11.1-_SGN-E204223+ (100735 100681,99453 99421,96557 96534,96499 96230) ******************************************************************************** EST sequence 100 +strand 554 n (File: SGN-E374844+) 1 ATGGTCTTCT TTGGTTAGGA GGGCCAATAA AAATTGAAAT GAAAACAGGA AGGAAAGATA 61 GCAAGGAAAC TTACTTTTCA GAAGTTGAGA AGTACCTCCC TAATCACAAC GATTCAATCT 121 CATCTGTGCT TTCAAGATTT CAATCAATTG GTGTTGATAC TGAAGGAACT GTTGCTCTAC 181 TTGGTAATCA ACTCTCTAAA CTCTCGTTTA ATCATAAATT TTTTAAAAAT AATTAATTAT 241 ACAAAATTAT GTTTATTTTG ATCGAAAAAT TCATGTAGAG TTCATTCTTA GGGCCCGTTT 301 GGATGGACTT AGCTTTAAAA AAGTACTTTT AAAAGTTATG CATTTGGATA AAAGTGTTGA 361 AGTTGCTATG CCAAACGTGA AAATGGAAAA ATGGAAGAAA GAGATGTTAG AGTTATGTGG 421 ATAATTTGGA GATTGTATAA AAATATTAAG GGCAAAAAGA TAAAAATGTG GTCAACTTAA 481 AACAGCTTAT AAGCTAAAAA AAAAGCACCC CTACCCCAGC TTTTAACTTT TGGCTTAATA 541 TAAGTTTTTT TTTT Predicted gene structure (within gDNA segment 101545 to 95499): Exon 1 100735 100681 ( 55 n); cDNA 203 254 ( 52 n); score: 0.709 Intron 1 100680 99454 (1227 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0) Exon 2 99453 99421 ( 33 n); cDNA 255 287 ( 33 n); score: 0.667 Intron 2 99420 96558 (2863 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 3 96557 96534 ( 24 n); cDNA 288 311 ( 24 n); score: 0.875 Intron 3 96533 96500 ( 34 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.68) Exon 4 96499 96255 ( 245 n); cDNA 312 552 ( 241 n); score: 0.871 MATCH C10SLe0045H11.1- SGN-E374844+ 0.842 357 0.644 C PGS_C10SLe0045H11.1-_SGN-E374844+ (100735 100681,99453 99421,96557 96534,96499 96255) Alignment (genomic DNA sequence = upper lines): CTTATTTAAT GATTTTAAAT TTTTAAACTA TTTAAATATT TATAAAATTA TATTTTAAAA 100676 || |||||| | | | | ||| ||| || || ||| | || ||||||| | ||| CTCGTTTAAT CA-TAAATTT TTTAAAAATA ATT-AAT-TA TACAAAATTA TGTTT..... 254 AAGTGCATGA ATTAATTCGG GATGTATTAC TGCTTTAAAT TTAATCATAA ATTTCTAATT 100616 .......... .......... .......... .......... .......... .......... 254 CAATCTTGAA AGAGAATCAA ATTGAAATAA GCGGCTCAGC ATATGTTTAA TTGGGGATTC 100556 .......... .......... .......... .......... .......... .......... 254 GACTCTGACT CGAATAATTT TGGATGTCAT TTTCATTAAT TTATAATTTC ATTGTGTTTT 100496 .......... .......... .......... .......... .......... .......... 254 AGTAGTGTTT ATGACGATTT TGATATTATA GTTGAATTAT TAATTGAGTG AGGTTTAATT 100436 .......... .......... .......... .......... .......... .......... 254 AGTAATGGGT GGGTAGTGGA TTGATTTATA AATTACACTA ATAAGTTAAA TTATAACAAA 100376 .......... .......... .......... .......... .......... .......... 254 TAGTTGAGCG CCACGTATTT AAAAAAATAT TTAAATAGTT TAACTATAAA ATCGTTAAAT 100316 .......... .......... .......... .......... .......... .......... 254 AACTGGTCAA TTTTGAACCA AAAGGTAGGT GGAGAGTAAT TTTATATCAT TTCCAATACT 100256 .......... .......... .......... .......... .......... .......... 254 TTGAGGATAT TTTAGACCTT TTTCCGTTCC ATCTATTCGA TTCAAATGAT TGCAACAATA 100196 .......... .......... .......... .......... .......... .......... 254 AATAAAATTA TGATCGACGC AATTATCATT GTTATGATAA TCTACAACTT TTACTATGTG 100136 .......... .......... .......... .......... .......... .......... 254 CTTGTGGACC TATATAACTT GATATGTTGT TTTGAAGAGT TAAAATAACT AGCTAAAATG 100076 .......... .......... .......... .......... .......... .......... 254 AGTTGATTAA TTACACTAAT TATATATATA TATTTTTTTA TAAAAGTTAA TATATATTGT 100016 .......... .......... .......... .......... .......... .......... 254 GTAATTAAAA TGATTACACA ATATGTTTTG TAATCATTTT TGTACTTAAA AGAATGTTTT 99956 .......... .......... .......... .......... .......... .......... 254 ACTCCTTTAT ATGAAACTTC TCATTATTTA AATTTAATTA GATACCAACA AAAATATCGA 99896 .......... .......... .......... .......... .......... .......... 254 ATACCCAAAT AAAAAATAAA ATAAGTCTAG GGGAACTAAA AAAAAGTTTT AGTTGATGGA 99836 .......... .......... .......... .......... .......... .......... 254 GTATCGTCAT TTATTGGAGG AAATTACGTG GTGAATAACG TACATTGGTA CTTGTCTTCC 99776 .......... .......... .......... .......... .......... .......... 254 TCAAACTTAT TATTACGATA TAACAGACAT TTTATAGTTG ATTTGACATA AAATTTAGGG 99716 .......... .......... .......... .......... .......... .......... 254 AAAAGGGTCT GATAGACCCC TCAACTTTGT TATTTAGAGC TGATATATCC CTTGTTATGA 99656 .......... .......... .......... .......... .......... .......... 254 AAGTGACTCA TATATACCCC TATTTGTAAA CAAATGGCTC ACATATACCC TTTTCCTCTA 99596 .......... .......... .......... .......... .......... .......... 254 ACGGAAATGA AAAAAATAAT AATTTTAATC TAAATTTTTA TTATTTTTTT CTAAAAAATA 99536 .......... .......... .......... .......... .......... .......... 254 TAATACCATA TGAGTAAATT TAATCCTTGT CAAACATATT TTTTTTGACT TTTTTTGTTT 99476 .......... .......... .......... .......... .......... .......... 254 CAATGACTAA TTTATAATTA TTATTTTGAT AATCAAATTT ATTTATGTTT CACTAATATT 99416 |||||||| ||||| || || || || | .......... .......... ..ATTTTGAT CGAAAAATTC ATGTAGAGTT CATTC..... 287 CTTGTAAAAC TTATTGTAGA TGACCAAATT TTTTCTTCCA ATACGAAATT AAATTACAAT 99356 .......... .......... .......... .......... .......... .......... 287 ATACACAAAA AAAATAGTTT AATTTTTTAT TCTTTAAACT AAGGAATGAA AGAAAACAAC 99296 .......... .......... .......... .......... .......... .......... 287 AAAATAAGAA TAAGAAATTC AAATAATTAT AATAAAAGAA GTCAAAAAAT AATTTATGTA 99236 .......... .......... .......... .......... .......... .......... 287 TGAAAAAAAT TAAAATATAC CTTAAGCTTT GATAGAAGAA TAATATATAC CCCTAAATAA 99176 .......... .......... .......... .......... .......... .......... 287 TTTTTTTTTA AAAATTAGAA GTAATAAATA TAAATTTAAA ACTAATTTTT TAACTTCCGT 99116 .......... .......... .......... .......... .......... .......... 287 TAAATGAAGG GTATATGTGA GCCATTTTAT AACGGCAGGG GTATATGTGA GCCGTTTGTA 99056 .......... .......... .......... .......... .......... .......... 287 TAACGGTAAG GGCATATATA AGCCACTTTT ATAACGAGGG GTATATCAGC TCCAAATGTC 98996 .......... .......... .......... .......... .......... .......... 287 AAAGTTGAGG GGTATATCAG ACCCTTTTCC CTAAAATTTA ATAGCTAATG AGTTAATTTT 98936 .......... .......... .......... .......... .......... .......... 287 TTATATATCG TATTTCTTTC AAAATTTATA TTTGACATAT TACATATGAT TTAAAGTTAT 98876 .......... .......... .......... .......... .......... .......... 287 GGAGATAGAC ATCAATTGAT TTCTCTATGA GGTCAATTTA TTTAATTGTA TGATGTATAA 98816 .......... .......... .......... .......... .......... .......... 287 TGTACTCCAA TTAAATAAAA TTACATAACA CATAATTAAG GGATCGGAAT TTTAATTAAT 98756 .......... .......... .......... .......... .......... .......... 287 TAAGAATAAA ATAAAAGTTG ACAACAATAC TAATTAACCT AAATTTTTGT CTTTTTCTCC 98696 .......... .......... .......... .......... .......... .......... 287 ACATATATTT TAAAGGAAAT TTACATAAAT ATACTGTATT AAAATATTTA TCATTTATAG 98636 .......... .......... .......... .......... .......... .......... 287 CAATAATATT TTTTTGACTT GATCACTTTA ATATATTTAC AGTACAATTT TAATACATAT 98576 .......... .......... .......... .......... .......... .......... 287 TACAACGAAC AATTTGTTAT TCACATATAA TACAAGTTTT ATTGATGGTT AATATATCTA 98516 .......... .......... .......... .......... .......... .......... 287 TATCACATTT TAATACACTA ATAATATGAT GTGTCAATTT ATTGCCAAAC AAGCATAATA 98456 .......... .......... .......... .......... .......... .......... 287 TATTTTCAAA AACATTTATA ATACATATAT ATATTGCATA CATAATTCAT CTTTTAAATA 98396 .......... .......... .......... .......... .......... .......... 287 CGTTTTGTAT ATTTAACATT ATTTTGCTAT AAATGGTAAT AAATTAAAAG TATCGTTCAA 98336 .......... .......... .......... .......... .......... .......... 287 ATAAATAATT ATTTATTAAA ATATAATTTT TCCTATATTT TATTTGATGG GCCTAGTATG 98276 .......... .......... .......... .......... .......... .......... 287 ATCCCTAGCA GTCCCAACAA AGATTTTCTT TTTAAAGCCC AATTCTCTTT TGGGTTACTA 98216 .......... .......... .......... .......... .......... .......... 287 TTTTGCTGTA TCATAAAATT GGTATCAAAA TAACAAGACA GGAATTTATA GCTTAATTTG 98156 .......... .......... .......... .......... .......... .......... 287 GCTATTAAGA TTTTCTTATT TCCAGAATTC AAATTAAAAA ATAATATAGT ATCTTAATTT 98096 .......... .......... .......... .......... .......... .......... 287 ATAATTATTT ACGTTATTAA TATGAATATG CATAACACCT ATATTGTATA CCAATGTATA 98036 .......... .......... .......... .......... .......... .......... 287 ATAGATATAT AACATCTTAT ACCATATTAT ACTGTGTAGA TACTTCATTA TATTACTTAA 97976 .......... .......... .......... .......... .......... .......... 287 TATAAATGAT TGGAAAAGGT TTAATTTAGA GAGGGTGGAG TATACGAAAT TCTACCTCTA 97916 .......... .......... .......... .......... .......... .......... 287 TTTCATATAT GAAGAGGTTA TTTTCAATAA ACAATCGGTT CAAGAAAAAC GTAGATTGAA 97856 .......... .......... .......... .......... .......... .......... 287 AAAGAAATGA CAGTGGAGAA ATCATATCAA AATATTATAG CAAGCATGAC AAAGCAGATC 97796 .......... .......... .......... .......... .......... .......... 287 AAAAGAGGAC GGTGCGTCGG AGTAAGCCGG TGGCTGGCTC GTGTTCGCGG TGCGGACACG 97736 .......... .......... .......... .......... .......... .......... 287 GTGCTAAAGT GGCTGAGATG TATACATCAA CTAGATTTTG TTCTATTCCA CTGTATACCA 97676 .......... .......... .......... .......... .......... .......... 287 AGTCTTGGAA GGCTATTGTT TGTAGTTTTT GTGGTGCCAT TCTCAAATCC TATACATAAA 97616 .......... .......... .......... .......... .......... .......... 287 CTCATAACAA TAGGTGATGG GTGATTAGTT ATATTCCCTT TTTCTCGAGG TTGCGGAGGT 97556 .......... .......... .......... .......... .......... .......... 287 AAAATAGATC GATGAAGGAT GATTAGTTAA ACACCTTCTG ATAGAAAAAG AAGATAGTAT 97496 .......... .......... .......... .......... .......... .......... 287 GTATATCATG TATATAGGTA AAGTATTAGT CATGATTTGC ATGCAAATAT TTTGAAATAT 97436 .......... .......... .......... .......... .......... .......... 287 ATTTTTCCTC TTTTTTATTT GTACCTTTGA AATCATGATG ATCCGCTATG GTTTTTGATT 97376 .......... .......... .......... .......... .......... .......... 287 ATTATGATAA TATATGAGCT AGTTGAACAT AACGTAAATT CATACGGATT TGTTATGAGT 97316 .......... .......... .......... .......... .......... .......... 287 TACACGTTAC AGCTGTAACT CTGCATCATT TGTCATATTT GTCGTTCAAC TTGAGGATAT 97256 .......... .......... .......... .......... .......... .......... 287 TTTAGTCTGA AATATGTTCA TTAACCTAAT AGAGTCATTT TCAGACAAAA TTTAAAATTT 97196 .......... .......... .......... .......... .......... .......... 287 AGAGACGATA TATAAATAAC GGCCTAATGT ATATCTTTTC GTGCAAATCA CCCACTAGTT 97136 .......... .......... .......... .......... .......... .......... 287 TCGAGGGTCG AGTTATTAAA ACCAAACATA TTCGAATTTT TTTTTAATGT ACAATTGTTA 97076 .......... .......... .......... .......... .......... .......... 287 ATTTGAAAAT GGAATAAAAG ATGAGCAATT TGATAGAGGA AATAGTTAAT TTTTAGCCAA 97016 .......... .......... .......... .......... .......... .......... 287 TAATTTTTTT TCCTCCTAAA AATATAGAAA TATATGAAGA GGAAGGCAGA TGAGGACCCA 96956 .......... .......... .......... .......... .......... .......... 287 ACATTGTTGG TGGCCATGTG CATTTGTATA GAGGAAATGG ACAAAATAAA TAAATAAAAT 96896 .......... .......... .......... .......... .......... .......... 287 TATTAAGTAA TCAAATTTCT AAATTTTCAT TTTTGATTAT ATAAAATGCG TTTAAATTAG 96836 .......... .......... .......... .......... .......... .......... 287 CAGATTAAAA ATAATTGATA ATATCATATA TTAAAAAAAT CACGTATAGA TATTAAGTAT 96776 .......... .......... .......... .......... .......... .......... 287 TAAAAAGTAT TTTAAGCGTT GAGATTAATT TATCATGTAT GTTTATGCAT CATTACTCAA 96716 .......... .......... .......... .......... .......... .......... 287 TAGTAGAAAA AAAAAGAATT AAATTTTACA TTCAAAATTA AATAAAAAAG CTTATTAAAT 96656 .......... .......... .......... .......... .......... .......... 287 CGTCAGATCC CTAATCGCGA AATAAATTTA AAAAAAACAT TATTAAATTA CCAAATTCCT 96596 .......... .......... .......... .......... .......... .......... 287 AAAAACTCCC TTTTTGGCGA TGTAAAGCAT GTTTAGACTA AGGGTCCGTT TGGATGGGCT 96536 | |||| ||||| ||||||| || .......... .......... .......... ........TT AGGGCCCGTT TGGATGGACT 309 TAATAAAAGC AGCTTTAAAA AAGTACTTTT GAAAGTGCTG AAACTTATTT TTAAAAAAAG 96476 || ||| || | | | ||||| TA........ .......... .......... ......GCTT TAAAAAAGTA CTTTTAAAAG 335 CAATTATGCG TTTGGATAAA AGTGCTGAAG TTGTTATGTC AAATGTGAAA A-AGAAAAAT 96417 |||||| |||||||||| |||| ||||| ||| |||| | ||| |||||| | ||||||| ---TTATGCA TTTGGATAAA AGTGTTGAAG TTGCTATGCC AAACGTGAAA ATGGAAAAAT 392 AGAAGAAAGA GATGTTAGGG TTATATGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG 96357 ||||||||| |||||||| | |||| ||| | |||||||||| |||||||||| |||||||||| GGAAGAAAGA GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG 452 AAAAAACATA AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAGCACCC 96297 ||||| ||| |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| CAAAAAGATA AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC 510 CTACCCCAGC TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TT 96255 |||||||||| |||||||||| |||||||| | |||||||||| || CTACCCCAGC TTTTAACTTT TGGCTTAATA TAAGTTTTTT TT 552 hqPGS_C10SLe0045H11.1-_SGN-E374844+ (100735 100681,99453 99421,96557 96534,96499 96255) ******************************************************************************** EST sequence 113 +strand 624 n (File: SGN-E542827+) 1 TTTTCTTTTT TTTTGGTTAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTATT 61 TATATTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA CCAAAATTTT TCTTTGAATA 121 CCAAATTAAA TTACAATACA CACAAAAAAA ATAGTTTAGT TTTTTTTCTC TTTAAACTAA 181 GGAATGAAAG AAAAAAAATT AGAATAACAA ACTCAAATAA TTATAATAAA AGAAGTCAAA 241 CAATAATTTA TGTATAAAAA AAATTAAATA TAACCTCGAA CTTTGATAGA AGAATAATAT 301 ATACCTTTAA ATAATTTTTT TAAAAACAAT CAAAAGTAAT AAATATAAAT TTAAAATTAA 361 TTTTTTAATA TATATTAGCC ATTTTGTAAC GACAGTGCTG CAAATGACAA AATTGAGAAA 421 TATATCAAAC TTTTTCCGTA AAATAGATAA ACTTAAAAGA GGATATTTGT AAACAACACA 481 AAATCTTCAA TCAAATACAA AGTTCAAACA CTAGCAGTGA ACCAAATCAT CGAAAAGTTA 541 TAAAATTGTT AGAAATTTCT ACCATATATT GGATGAAAAC ATTGAAATTT CCTGGAATTT 601 TGAACTTTAG GTTGCTGGTT TTGG Predicted gene structure (within gDNA segment 100254 to 94390): Exon 1 99493 99126 ( 368 n); cDNA 1 365 ( 365 n); score: 0.890 Intron 1 99125 99078 ( 48 n); Pd: 0.000 (s: 0.85), Pa: 0.943 (s: 0) Exon 2 99077 99051 ( 27 n); cDNA 366 391 ( 26 n); score: 0.704 Intron 2 99050 99014 ( 37 n); Pd: 0.006 (s: 0), Pa: 0.000 (s: 0.72) Exon 3 99013 98956 ( 58 n); cDNA 392 447 ( 56 n); score: 0.724 Intron 3 98955 96338 (2618 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0) Exon 4 96337 96303 ( 35 n); cDNA 448 481 ( 34 n); score: 0.714 Intron 4 96302 95609 ( 694 n); Pd: 0.000 (s: 0), Pa: 0.821 (s: 0) Exon 5 95608 95595 ( 14 n); cDNA 482 495 ( 14 n); score: 0.571 MATCH C10SLe0045H11.1- SGN-E542827+ 0.867 502 0.804 C PGS_C10SLe0045H11.1-_SGN-E542827+ (99493 99126,99077 99051,99013 98956,96337 96303,95608 95595) Alignment (genomic DNA sequence = upper lines): TTTTGACTTT TTTTGTTTCA ATGACTAATT TATAATTATT ATTTTGATAA TCAAATTTAT 99434 |||| ||| ||||| || | |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTTTTT TTTTGGTT-A ATGACTAATT TATAATTATT ATTTTGATAA TCAAATTTAT 59 TTATGTTTCA CTAATATTCT TGTAAAACTT ATTGTAGATG ACCAAATTTT TTCTTCCAAT 99374 |||| ||||| |||||||||| |||||||||| |||||||||| |||||| ||| ||||| ||| TTATATTTCA CTAATATTCT TGTAAAACTT ATTGTAGATG ACCAAAATTT TTCTTTGAAT 119 ACGAAATTAA ATTACAATAT ACACAAAAAA AATAGTTTAA TTTTTTAT-T CTTTAAACTA 99315 || ||||||| ||||||||| |||||||||| ||||||||| |||||| | | |||||||||| ACCAAATTAA ATTACAATAC ACACAAAAAA AATAGTTTAG TTTTTTTTCT CTTTAAACTA 179 AGGAATGAAA GAAAACAACA AAATAAGAAT AAGAAATTCA AATAATTATA ATAAAAGAAG 99255 |||||||||| | || || | |||| ||||| || ||| ||| |||||||||| |||||||||| AGGAATGAAA G--AA-AA-A AAATTAGAAT AACAAACTCA AATAATTATA ATAAAAGAAG 235 TCAAAAAATA ATTTATGTAT GAAAAAAATT AAA-ATATAC CTTAAGCTTT GATAGAAGAA 99196 ||||| |||| |||||||||| ||||||||| ||| ||| || || | |||| |||||||||| TCAAACAATA ATTTATGTAT AAAAAAAATT AAATATA-AC CTCGAACTTT GATAGAAGAA 294 TAATATATAC CCCTAAATAA TTTTTTTTTA AA-AATTAGA AGTAATAAAT ATAAATTTAA 99137 |||||||||| | ||||||| ||||||| | || ||| | | |||||||||| |||||||||| TAATATATAC CTTTAAATAA TTTTTTTAAA AACAATCAAA AGTAATAAAT ATAAATTTAA 354 AACTAATTTT TTAACTTCCG TTAAATGAAG GGTATATGTG AGCCATTTTA TAACGGCAGG 99077 || ||||||| | AATTAATTTT T......... .......... .......... .......... .........T 366 GGTATATGTG AGCCGTTTGT ATAACGGTAA GGGCATATAT AAGCCACTTT TATAACGAGG 99017 ||||| | |||| ||| | ||||| AATATATATT AGCCATTT-T GTAACG.... .......... .......... .......... 391 GGTATATCAG CTCCAAATGT CAAAGTTGAG GGGTATATCA GACCCTTTTC CCTAAAATTT 98957 | | | || |||||| |||| ||||| ||||||| | | ||||| | |||||| ...ACA-GTG CTGCAAATGA CAAAATTGAG AAATATATCA -AACTTTTTC CGTAAAATAG 446 AATAGCTAAT GAGTTAATTT TTTATATATC GTATTTCTTT CAAAATTTAT ATTTGACATA 98897 | A......... .......... .......... .......... .......... .......... 447 TTACATATGA TTTAAAGTTA TGGAGATAGA CATCAATTGA TTTCTCTATG AGGTCAATTT 98837 .......... .......... .......... .......... .......... .......... 447 ATTTAATTGT ATGATGTATA ATGTACTCCA ATTAAATAAA ATTACATAAC ACATAATTAA 98777 .......... .......... .......... .......... .......... .......... 447 GGGATCGGAA TTTTAATTAA TTAAGAATAA AATAAAAGTT GACAACAATA CTAATTAACC 98717 .......... .......... .......... .......... .......... .......... 447 TAAATTTTTG TCTTTTTCTC CACATATATT TTAAAGGAAA TTTACATAAA TATACTGTAT 98657 .......... .......... .......... .......... .......... .......... 447 TAAAATATTT ATCATTTATA GCAATAATAT TTTTTTGACT TGATCACTTT AATATATTTA 98597 .......... .......... .......... .......... .......... .......... 447 CAGTACAATT TTAATACATA TTACAACGAA CAATTTGTTA TTCACATATA ATACAAGTTT 98537 .......... .......... .......... .......... .......... .......... 447 TATTGATGGT TAATATATCT ATATCACATT TTAATACACT AATAATATGA TGTGTCAATT 98477 .......... .......... .......... .......... .......... .......... 447 TATTGCCAAA CAAGCATAAT ATATTTTCAA AAACATTTAT AATACATATA TATATTGCAT 98417 .......... .......... .......... .......... .......... .......... 447 ACATAATTCA TCTTTTAAAT ACGTTTTGTA TATTTAACAT TATTTTGCTA TAAATGGTAA 98357 .......... .......... .......... .......... .......... .......... 447 TAAATTAAAA GTATCGTTCA AATAAATAAT TATTTATTAA AATATAATTT TTCCTATATT 98297 .......... .......... .......... .......... .......... .......... 447 TTATTTGATG GGCCTAGTAT GATCCCTAGC AGTCCCAACA AAGATTTTCT TTTTAAAGCC 98237 .......... .......... .......... .......... .......... .......... 447 CAATTCTCTT TTGGGTTACT ATTTTGCTGT ATCATAAAAT TGGTATCAAA ATAACAAGAC 98177 .......... .......... .......... .......... .......... .......... 447 AGGAATTTAT AGCTTAATTT GGCTATTAAG ATTTTCTTAT TTCCAGAATT CAAATTAAAA 98117 .......... .......... .......... .......... .......... .......... 447 AATAATATAG TATCTTAATT TATAATTATT TACGTTATTA ATATGAATAT GCATAACACC 98057 .......... .......... .......... .......... .......... .......... 447 TATATTGTAT ACCAATGTAT AATAGATATA TAACATCTTA TACCATATTA TACTGTGTAG 97997 .......... .......... .......... .......... .......... .......... 447 ATACTTCATT ATATTACTTA ATATAAATGA TTGGAAAAGG TTTAATTTAG AGAGGGTGGA 97937 .......... .......... .......... .......... .......... .......... 447 GTATACGAAA TTCTACCTCT ATTTCATATA TGAAGAGGTT ATTTTCAATA AACAATCGGT 97877 .......... .......... .......... .......... .......... .......... 447 TCAAGAAAAA CGTAGATTGA AAAAGAAATG ACAGTGGAGA AATCATATCA AAATATTATA 97817 .......... .......... .......... .......... .......... .......... 447 GCAAGCATGA CAAAGCAGAT CAAAAGAGGA CGGTGCGTCG GAGTAAGCCG GTGGCTGGCT 97757 .......... .......... .......... .......... .......... .......... 447 CGTGTTCGCG GTGCGGACAC GGTGCTAAAG TGGCTGAGAT GTATACATCA ACTAGATTTT 97697 .......... .......... .......... .......... .......... .......... 447 GTTCTATTCC ACTGTATACC AAGTCTTGGA AGGCTATTGT TTGTAGTTTT TGTGGTGCCA 97637 .......... .......... .......... .......... .......... .......... 447 TTCTCAAATC CTATACATAA ACTCATAACA ATAGGTGATG GGTGATTAGT TATATTCCCT 97577 .......... .......... .......... .......... .......... .......... 447 TTTTCTCGAG GTTGCGGAGG TAAAATAGAT CGATGAAGGA TGATTAGTTA AACACCTTCT 97517 .......... .......... .......... .......... .......... .......... 447 GATAGAAAAA GAAGATAGTA TGTATATCAT GTATATAGGT AAAGTATTAG TCATGATTTG 97457 .......... .......... .......... .......... .......... .......... 447 CATGCAAATA TTTTGAAATA TATTTTTCCT CTTTTTTATT TGTACCTTTG AAATCATGAT 97397 .......... .......... .......... .......... .......... .......... 447 GATCCGCTAT GGTTTTTGAT TATTATGATA ATATATGAGC TAGTTGAACA TAACGTAAAT 97337 .......... .......... .......... .......... .......... .......... 447 TCATACGGAT TTGTTATGAG TTACACGTTA CAGCTGTAAC TCTGCATCAT TTGTCATATT 97277 .......... .......... .......... .......... .......... .......... 447 TGTCGTTCAA CTTGAGGATA TTTTAGTCTG AAATATGTTC ATTAACCTAA TAGAGTCATT 97217 .......... .......... .......... .......... .......... .......... 447 TTCAGACAAA ATTTAAAATT TAGAGACGAT ATATAAATAA CGGCCTAATG TATATCTTTT 97157 .......... .......... .......... .......... .......... .......... 447 CGTGCAAATC ACCCACTAGT TTCGAGGGTC GAGTTATTAA AACCAAACAT ATTCGAATTT 97097 .......... .......... .......... .......... .......... .......... 447 TTTTTTAATG TACAATTGTT AATTTGAAAA TGGAATAAAA GATGAGCAAT TTGATAGAGG 97037 .......... .......... .......... .......... .......... .......... 447 AAATAGTTAA TTTTTAGCCA ATAATTTTTT TTCCTCCTAA AAATATAGAA ATATATGAAG 96977 .......... .......... .......... .......... .......... .......... 447 AGGAAGGCAG ATGAGGACCC AACATTGTTG GTGGCCATGT GCATTTGTAT AGAGGAAATG 96917 .......... .......... .......... .......... .......... .......... 447 GACAAAATAA ATAAATAAAA TTATTAAGTA ATCAAATTTC TAAATTTTCA TTTTTGATTA 96857 .......... .......... .......... .......... .......... .......... 447 TATAAAATGC GTTTAAATTA GCAGATTAAA AATAATTGAT AATATCATAT ATTAAAAAAA 96797 .......... .......... .......... .......... .......... .......... 447 TCACGTATAG ATATTAAGTA TTAAAAAGTA TTTTAAGCGT TGAGATTAAT TTATCATGTA 96737 .......... .......... .......... .......... .......... .......... 447 TGTTTATGCA TCATTACTCA ATAGTAGAAA AAAAAAGAAT TAAATTTTAC ATTCAAAATT 96677 .......... .......... .......... .......... .......... .......... 447 AAATAAAAAA GCTTATTAAA TCGTCAGATC CCTAATCGCG AAATAAATTT AAAAAAAACA 96617 .......... .......... .......... .......... .......... .......... 447 TTATTAAATT ACCAAATTCC TAAAAACTCC CTTTTTGGCG ATGTAAAGCA TGTTTAGACT 96557 .......... .......... .......... .......... .......... .......... 447 AAGGGTCCGT TTGGATGGGC TTAATAAAAG CAGCTTTAAA AAAGTACTTT TGAAAGTGCT 96497 .......... .......... .......... .......... .......... .......... 447 GAAACTTATT TTTAAAAAAA GCAATTATGC GTTTGGATAA AAGTGCTGAA GTTGTTATGT 96437 .......... .......... .......... .......... .......... .......... 447 CAAATGTGAA AAAGAAAAAT AGAAGAAAGA GATGTTAGGG TTATATGGGT AATTTGGAGA 96377 .......... .......... .......... .......... .......... .......... 447 TTGTATAAAA ATATTAAGGG AAAAAACATA AAAATGTGGT CAACTTAAAA CAGCTTATAA 96317 | ||||||||| || ||| .......... .......... .......... .........T AAACTTAAAA GAGGATATTT 468 GCTAAAAAAA AAAAGCACCC CTACCCCAGC TTTTAACTTT TGGCTTAAAA TAAGTTTTTT 96257 | |||| || | || G-TAAACAAC ACAA...... .......... .......... .......... .......... 481 TTAACTTAAA ATAAGCTATT TTGAGTATTG CCAAACAGTT AAATAAGTCA AAAACCAGCT 96197 .......... .......... .......... .......... .......... .......... 481 TTTAAGTCAG TTTAACCAGC TTTTAAGCTG AGCCAAACAG GCTCTAACTA ATTAAAAACA 96137 .......... .......... .......... .......... .......... .......... 481 ATAGGCATAT ATTATGTATC AAAAAACTAT TTTATACGAT GAGACTAATT TTATCATGTC 96077 .......... .......... .......... .......... .......... .......... 481 TAATTATGCA GCAGATTAAT TTATTTAATT AAAACAACAT CCATAAAGAT TTTTCTTGTT 96017 .......... .......... .......... .......... .......... .......... 481 AAAATGAGCG AAATGCAATT AATATATTCG AGTTTGAGTT TTGAAAATGA AAACGCATGA 95957 .......... .......... .......... .......... .......... .......... 481 GATAACTCTC GAGCCATGTG AATTCAAATA TGGTCTATGA TGAGATACTT TTTCCGTCCA 95897 .......... .......... .......... .......... .......... .......... 481 TTTTTAATTG TCATAATATT TTTTTTAGAG CCAAATTATA AGAACTTTAA CTAACATTTT 95837 .......... .......... .......... .......... .......... .......... 481 ACAAAGTAAT TTTTTAATCG ATATGCAAAA AATTACAATT TATGTACCTT TGTATAGTTT 95777 .......... .......... .......... .......... .......... .......... 481 TTGAACATAT ATTTTTTTTG CTTTAAATCA AATTAATGTA ATCTAATTTA ACTTTGAAAA 95717 .......... .......... .......... .......... .......... .......... 481 TTAATCAAAT TGATTTTCGA AAAACGCAAC ATGACAAATA AAAGTAGCCG AATATTGTAG 95657 .......... .......... .......... .......... .......... .......... 481 TTAAATTTAA TTTTGAAAAT TAATCTAATT GATTTTCGAA AAATGCAGCA TGACAAATAA 95597 | | ||| | .......... .......... .......... .......... ........AA TCTTCAATCA 493 AA 95595 || AA 495 hqPGS_C10SLe0045H11.1-_SGN-E542827+ (99493 99126,99077 99051,99013 98956,96337 96303) ******************************************************************************** EST sequence 56 +strand 506 n (File: SGN-E578392+) 1 CTCAGCTTAA ACCAGTTTTT TTCGATTCGA TGTTCGATAT ATATAACGAA GTCAAATCTC 61 ATATATTATT AAAGACATAA ATATAGATAA AGGTGACAGA GTTAGTTTAT CAACCTAACA 121 TGTCTAATCC ACCTAAGTTT GGGAAATTAA AGTTATTGAC CTACTCATTT ATTAGTTTAC 181 TGGGTAAGAA ATTAAAAATA ATATATAGTC TAAATTAATT TATGAGAATT TTTGTCAGAA 241 TATTTTCTTA TTTAGGGCCC GTTTGGATGG GCTTAATAAA AACAGCTTTA AAAAAGTACT 301 TTTGAAAGTG CTGAAACTTA TTTCTAAAAT AAACAGTTAT GCATTTGGAT AAAAGTGCTG 361 AAGTTGTTAT GCCAAACGTG AAAAGCGAAA AATGGAAGAA AGAGATGTTA GGGTTATATG 421 TGTAACTTGG AAATTGTATA AAAATATTAA GGGCAAAAAG ATAAAGATGT GATCAACTTA 481 AAACAGCTTA TAAGCTAAAA AAAAAA Predicted gene structure (within gDNA segment 100330 to 95694): Exon 1 98885 98845 ( 41 n); cDNA 147 188 ( 42 n); score: 0.622 Intron 1 98844 98126 ( 719 n); Pd: 0.384 (s: 0.62), Pa: 0.000 (s: 0) Exon 2 98125 98094 ( 32 n); cDNA 189 219 ( 31 n); score: 0.812 Intron 2 98093 97266 ( 828 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 97265 97235 ( 31 n); cDNA 220 249 ( 30 n); score: 0.677 Intron 3 97234 96560 ( 675 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 4 96559 96304 ( 256 n); cDNA 250 506 ( 257 n); score: 0.912 MATCH C10SLe0045H11.1- SGN-E578392+ 0.912 360 0.711 C PGS_C10SLe0045H11.1-_SGN-E578392+ (98885 98845,98125 98094,97265 97235,96559 96304) Alignment (genomic DNA sequence = upper lines): TTAAAGTTAT GGAGATAGAC ATCAATT-GA TTTCTCTATG AGGTCAATTT ATTTAATTGT 98827 |||||||||| || || | || ||| | || || | || TTAAAGTTAT TGACCTACTC ATTTATTAGT TTACTGGGTA AG........ .......... 188 ATGATGTATA ATGTACTCCA ATTAAATAAA ATTACATAAC ACATAATTAA GGGATCGGAA 98767 .......... .......... .......... .......... .......... .......... 188 TTTTAATTAA TTAAGAATAA AATAAAAGTT GACAACAATA CTAATTAACC TAAATTTTTG 98707 .......... .......... .......... .......... .......... .......... 188 TCTTTTTCTC CACATATATT TTAAAGGAAA TTTACATAAA TATACTGTAT TAAAATATTT 98647 .......... .......... .......... .......... .......... .......... 188 ATCATTTATA GCAATAATAT TTTTTTGACT TGATCACTTT AATATATTTA CAGTACAATT 98587 .......... .......... .......... .......... .......... .......... 188 TTAATACATA TTACAACGAA CAATTTGTTA TTCACATATA ATACAAGTTT TATTGATGGT 98527 .......... .......... .......... .......... .......... .......... 188 TAATATATCT ATATCACATT TTAATACACT AATAATATGA TGTGTCAATT TATTGCCAAA 98467 .......... .......... .......... .......... .......... .......... 188 CAAGCATAAT ATATTTTCAA AAACATTTAT AATACATATA TATATTGCAT ACATAATTCA 98407 .......... .......... .......... .......... .......... .......... 188 TCTTTTAAAT ACGTTTTGTA TATTTAACAT TATTTTGCTA TAAATGGTAA TAAATTAAAA 98347 .......... .......... .......... .......... .......... .......... 188 GTATCGTTCA AATAAATAAT TATTTATTAA AATATAATTT TTCCTATATT TTATTTGATG 98287 .......... .......... .......... .......... .......... .......... 188 GGCCTAGTAT GATCCCTAGC AGTCCCAACA AAGATTTTCT TTTTAAAGCC CAATTCTCTT 98227 .......... .......... .......... .......... .......... .......... 188 TTGGGTTACT ATTTTGCTGT ATCATAAAAT TGGTATCAAA ATAACAAGAC AGGAATTTAT 98167 .......... .......... .......... .......... .......... .......... 188 AGCTTAATTT GGCTATTAAG ATTTTCTTAT TTCCAGAATT CAAATTAAAA AATAATATAG 98107 ||||||| | ||||||||| .......... .......... .......... .......... .AAATTAA-A AATAATATAT 206 TATCTTAATT TATAATTATT TACGTTATTA ATATGAATAT GCATAACACC TATATTGTAT 98047 ||| |||| || AGTCTAAATT AAT....... .......... .......... .......... .......... 219 ACCAATGTAT AATAGATATA TAACATCTTA TACCATATTA TACTGTGTAG ATACTTCATT 97987 .......... .......... .......... .......... .......... .......... 219 ATATTACTTA ATATAAATGA TTGGAAAAGG TTTAATTTAG AGAGGGTGGA GTATACGAAA 97927 .......... .......... .......... .......... .......... .......... 219 TTCTACCTCT ATTTCATATA TGAAGAGGTT ATTTTCAATA AACAATCGGT TCAAGAAAAA 97867 .......... .......... .......... .......... .......... .......... 219 CGTAGATTGA AAAAGAAATG ACAGTGGAGA AATCATATCA AAATATTATA GCAAGCATGA 97807 .......... .......... .......... .......... .......... .......... 219 CAAAGCAGAT CAAAAGAGGA CGGTGCGTCG GAGTAAGCCG GTGGCTGGCT CGTGTTCGCG 97747 .......... .......... .......... .......... .......... .......... 219 GTGCGGACAC GGTGCTAAAG TGGCTGAGAT GTATACATCA ACTAGATTTT GTTCTATTCC 97687 .......... .......... .......... .......... .......... .......... 219 ACTGTATACC AAGTCTTGGA AGGCTATTGT TTGTAGTTTT TGTGGTGCCA TTCTCAAATC 97627 .......... .......... .......... .......... .......... .......... 219 CTATACATAA ACTCATAACA ATAGGTGATG GGTGATTAGT TATATTCCCT TTTTCTCGAG 97567 .......... .......... .......... .......... .......... .......... 219 GTTGCGGAGG TAAAATAGAT CGATGAAGGA TGATTAGTTA AACACCTTCT GATAGAAAAA 97507 .......... .......... .......... .......... .......... .......... 219 GAAGATAGTA TGTATATCAT GTATATAGGT AAAGTATTAG TCATGATTTG CATGCAAATA 97447 .......... .......... .......... .......... .......... .......... 219 TTTTGAAATA TATTTTTCCT CTTTTTTATT TGTACCTTTG AAATCATGAT GATCCGCTAT 97387 .......... .......... .......... .......... .......... .......... 219 GGTTTTTGAT TATTATGATA ATATATGAGC TAGTTGAACA TAACGTAAAT TCATACGGAT 97327 .......... .......... .......... .......... .......... .......... 219 TTGTTATGAG TTACACGTTA CAGCTGTAAC TCTGCATCAT TTGTCATATT TGTCGTTCAA 97267 .......... .......... .......... .......... .......... .......... 219 CTTGAGGATA TTTTAGTCTG AAATATGTTC ATTAACCTAA TAGAGTCATT TTCAGACAAA 97207 || | | |||| ||| | || ||| ||| | .TTATGAGAA TTTTTGTCAG AA-TATTTTC TT........ .......... .......... 249 ATTTAAAATT TAGAGACGAT ATATAAATAA CGGCCTAATG TATATCTTTT CGTGCAAATC 97147 .......... .......... .......... .......... .......... .......... 249 ACCCACTAGT TTCGAGGGTC GAGTTATTAA AACCAAACAT ATTCGAATTT TTTTTTAATG 97087 .......... .......... .......... .......... .......... .......... 249 TACAATTGTT AATTTGAAAA TGGAATAAAA GATGAGCAAT TTGATAGAGG AAATAGTTAA 97027 .......... .......... .......... .......... .......... .......... 249 TTTTTAGCCA ATAATTTTTT TTCCTCCTAA AAATATAGAA ATATATGAAG AGGAAGGCAG 96967 .......... .......... .......... .......... .......... .......... 249 ATGAGGACCC AACATTGTTG GTGGCCATGT GCATTTGTAT AGAGGAAATG GACAAAATAA 96907 .......... .......... .......... .......... .......... .......... 249 ATAAATAAAA TTATTAAGTA ATCAAATTTC TAAATTTTCA TTTTTGATTA TATAAAATGC 96847 .......... .......... .......... .......... .......... .......... 249 GTTTAAATTA GCAGATTAAA AATAATTGAT AATATCATAT ATTAAAAAAA TCACGTATAG 96787 .......... .......... .......... .......... .......... .......... 249 ATATTAAGTA TTAAAAAGTA TTTTAAGCGT TGAGATTAAT TTATCATGTA TGTTTATGCA 96727 .......... .......... .......... .......... .......... .......... 249 TCATTACTCA ATAGTAGAAA AAAAAAGAAT TAAATTTTAC ATTCAAAATT AAATAAAAAA 96667 .......... .......... .......... .......... .......... .......... 249 GCTTATTAAA TCGTCAGATC CCTAATCGCG AAATAAATTT AAAAAAAACA TTATTAAATT 96607 .......... .......... .......... .......... .......... .......... 249 ACCAAATTCC TAAAAACTCC CTTTTTGGCG ATGTAAAGCA TGTTTAGACT AAGGGTCCGT 96547 | | |||| |||| .......... .......... .......... .......... .......ATT TAGGGCCCGT 262 TTGGATGGGC TTAATAAAAG CAGCTTTAAA AAAGTACTTT TGAAAGTGCT GAAACTTATT 96487 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGATGGGC TTAATAAAAA CAGCTTTAAA AAAGTACTTT TGAAAGTGCT GAAACTTATT 322 TTTAAAAAAA GCAATTATGC GTTTGGATAA AAGTGCTGAA GTTGTTATGT CAAATGTGAA 96427 | ||||| || || |||||| ||||||||| |||||||||| ||||||||| |||| ||||| TCTAAAATAA ACAGTTATGC ATTTGGATAA AAGTGCTGAA GTTGTTATGC CAAACGTGAA 382 AA-AGAAAAA TAGAAGAAAG AGATGTTAGG GTTATATGGG TAATTTGGAG ATTGTATAAA 96368 || |||||| | |||||||| |||||||||| |||||||| | ||| ||||| |||||||||| AAGCGAAAAA TGGAAGAAAG AGATGTTAGG GTTATATGTG TAACTTGGAA ATTGTATAAA 442 AATATTAAGG GAAAAAACAT AAAAATGTGG TCAACTTAAA ACAGCTTATA AGCTAAAAAA 96308 |||||||||| | ||||| || ||| ||||| |||||||||| |||||||||| |||||||||| AATATTAAGG GCAAAAAGAT AAAGATGTGA TCAACTTAAA ACAGCTTATA AGCTAAAAAA 502 AAAA 96304 |||| AAAA 506 hqPGS_C10SLe0045H11.1-_SGN-E578392+ (98125 98094,97265 97235,96559 96304) ******************************************************************************** EST sequence 115 +strand 662 n (File: SGN-E376754+) 1 TTTTTTTTTA AAATAAGTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA TTGTCAAACA 61 GCTAAATAAG TCAAAAACCA GCTTTTTAAG TCAGTTTGAC CAGTTTTTAA GCTGAGCCAA 121 ACAGGCTCTA AGAGGATCAA AGAAAGTACA CAAACTTAAA GAAAATAAGT AGAGATCACA 181 CCACTCATAC AATAAAACAT TACATTCAAT GAAGGTTCAA TACATCGAGA TGGTAAGACT 241 AACATTATAC TAGACAAGAG CCTACCCAAT GAATTATTTT TGGATTTTTT CACATTTTTG 301 ACAAGTCTAA ACTTCAAATG TAACAAGAGG ATAATGGAAT TACTTGGCCA TCATGACCTT 361 AACAAACTCC TCATAGTTGA TTTGTCCATC ACCATCAACA TCAGCTTCCC TAATCATCTC 421 ATCGACTTCT TCATCAGTAA GCTTCTCTCC AAGGTTAGTC ATCACATGAC GAAGCTCAGC 481 AGCGGAGATG AAGCCATTTT GATCCTTGTC GAAAACTCTG AATGCCTCTT TCAACTCCTC 541 CTCAGAGTCA GTATCCTTCA TCTTCCTGGC CATAAGGTTT AGAAACTCTG GGAAGTCGAT 601 GGTTCCATTA CCATCTGCAT CCACCTCGTT TATCATGTCC TGGAGCTCAG CTTTAGTAGG 661 GT Predicted gene structure (within gDNA segment 96942 to 90230): Exon 1 96279 96134 ( 146 n); cDNA 1 148 ( 148 n); score: 0.863 MATCH C10SLe0045H11.1- SGN-E376754+ 0.863 146 0.221 C PGS_C10SLe0045H11.1-_SGN-E376754+ (96279 96134) Alignment (genomic DNA sequence = upper lines): TTTTGGCTTA AAATAAGTTT TTTTTAACTT AAAATAAGCT ATTTTGAGTA TTGCCAAACA 96220 |||| ||| |||||||||| |||||||||| |||||||| | |||||||||| ||| |||||| TTTTTTTTTA AAATAAGTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA TTGTCAAACA 60 GTTAAATAAG TCAAAAACCA GCTTTT-AAG TCAGTTTAAC CAGCTTTTAA GCTGAGCCAA 96161 | |||||||| |||||||||| |||||| ||| ||||||| || ||| |||||| |||||||||| GCTAAATAAG TCAAAAACCA GCTTTTTAAG TCAGTTTGAC CAGTTTTTAA GCTGAGCCAA 120 ACAGGCTCTA A-CTAATTAA AAACAATA 96134 |||||||||| | || || | | | || ACAGGCTCTA AGAGGATCAA AGAAAGTA 148 hqPGS_C10SLe0045H11.1-_SGN-E376754+ (96279 96134) ******************************************************************************** EST sequence 1 -strand 387 n (File: SGN-E577960-) 1 AACTTAAAAT AAGCTGTTTT GAGTATTGCC AAACAGTTAA ATAAGTCAAA AACCAGCTTT 61 TAAGTCAGTT TGACCAGCTT TTAAGCTGAG CCAAACAGGC TCTAAGTTGC TCAAAAGTGG 121 TTTTTGGAGC CTTTGGGAGC TTCGAGTGTC GGAATAAAGT TCCATCAATA CCATCAGTAC 181 CGGAATGTGG AATCTGAGTT GTGAGAGTTG TTCGTTTCGT ATTCTGAGTC TTTTTGAGGA 241 TTTGAGGTCC TAAGTTGTGA AATTGTGGGC TTTTGGGTTG ACTTTGGTGA ACATTCGGGG 301 TTTGGATGCT CGGCTCAGAA TTTCCGAGTG TTTTGTTGAA TTTGGGGGAT GATTTTTGAG 361 AGGTTTCGAG CTTGTTTTAC ACTTTTG Predicted gene structure (within gDNA segment 97008 to 92730): Exon 1 96254 96150 ( 105 n); cDNA 1 105 ( 105 n); score: 0.981 MATCH C10SLe0045H11.1- SGN-E577960- 0.981 105 0.271 C PGS_C10SLe0045H11.1-_SGN-E577960- (96254 96150) Alignment (genomic DNA sequence = upper lines): AACTTAAAAT AAGCTATTTT GAGTATTGCC AAACAGTTAA ATAAGTCAAA AACCAGCTTT 96195 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTAAAAT AAGCTGTTTT GAGTATTGCC AAACAGTTAA ATAAGTCAAA AACCAGCTTT 60 TAAGTCAGTT TAACCAGCTT TTAAGCTGAG CCAAACAGGC TCTAA 96150 |||||||||| | |||||||| |||||||||| |||||||||| ||||| TAAGTCAGTT TGACCAGCTT TTAAGCTGAG CCAAACAGGC TCTAA 105 hqPGS_C10SLe0045H11.1-_SGN-E577960- (96254 96150) ******************************************************************************** EST sequence 30 -strand 540 n (File: SGN-E253695-) 1 TTTTAAAATA AGCAATTATG CGTTTGGATA AAAGTGTTGA AGTTGTTATG CCAAACGTGA 61 AAAGGGAAAA ATAGAAGAAA GAGAAGTTAG TGTTATATGG GTAATTTGGA GATTGTATAA 121 AAATATTAAG GGAAAAAACA TAAAAATATG GTCAACTTAA AACAGCTTAT AAGCTAAAAA 181 AAAAAAGCAC ACTTTTGGCT TAAAATAAGT TTTTTTAACT TAAAATAAGC TATTTTGAGT 241 ATTGCCAAAC ATTTAAATAA GTCAAAAACC AGCTTTTAAG TCAGTTTGAC CAGCTTTTAA 301 GCTGAGCCAA ACAGGCTCTA AAGCTCGAGA TAGTGAAACT CTAAGATGAT CAATTAAGGA 361 ACTGGTGTTG GTTGTTTTTA GTAGATCTCT TACTTGTTCA AATGCAGGCA TGAGGAAGAG 421 GAGTCCAGTT TGAAAGTAGT CAATTTGAAG CTCAAGAATG TCCCATGGTG TCAACTCAAT 481 AATCTTACAA TTATCTGTAT GGTGCTGACT TTTTCCCTCA GCTTTAACCG TCCATTTTGA Predicted gene structure (within gDNA segment 97683 to 93360): Exon 1 96487 96157 ( 331 n); cDNA 1 314 ( 314 n); score: 0.908 MATCH C10SLe0045H11.1- SGN-E253695- 0.908 331 0.613 C PGS_C10SLe0045H11.1-_SGN-E253695- (96487 96157) Alignment (genomic DNA sequence = upper lines): TTTTAAAAAA AGCAATTATG CGTTTGGATA AAAGTGCTGA AGTTGTTATG TCAAATGTGA 96428 |||||||| | |||||||||| |||||||||| |||||| ||| |||||||||| |||| |||| TTTTAAAATA AGCAATTATG CGTTTGGATA AAAGTGTTGA AGTTGTTATG CCAAACGTGA 60 AAA-AGAAAA ATAGAAGAAA GAGATGTTAG GGTTATATGG GTAATTTGGA GATTGTATAA 96369 ||| ||||| |||||||||| |||| ||||| ||||||||| |||||||||| |||||||||| AAAGGGAAAA ATAGAAGAAA GAGAAGTTAG TGTTATATGG GTAATTTGGA GATTGTATAA 120 AAATATTAAG GGAAAAAACA TAAAAATGTG GTCAACTTAA AACAGCTTAT AAGCTAAAAA 96309 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| AAATATTAAG GGAAAAAACA TAAAAATATG GTCAACTTAA AACAGCTTAT AAGCTAAAAA 180 AAAAAAGCAC CCCTACCCCA GCTTTTAACT TTTGGCTTAA AATAAGTTTT TTTTAACTTA 96249 ||||||| || | ||| |||||||||| |||||| ||| |||||||||| AAAAAAG--- --------CA -C-----ACT TTTGGCTTAA AATAAG-TTT TTTTAACTTA 222 AAATAAGCTA TTTTGAGTAT TGCCAAACAG TTAAATAAGT CAAAAACCAG CTTTTAAGTC 96189 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AAATAAGCTA TTTTGAGTAT TGCCAAACAT TTAAATAAGT CAAAAACCAG CTTTTAAGTC 282 AGTTTAACCA GCTTTTAAGC TGAGCCAAAC AG 96157 ||||| |||| |||||||||| |||||||||| || AGTTTGACCA GCTTTTAAGC TGAGCCAAAC AG 314 hqPGS_C10SLe0045H11.1-_SGN-E253695- (96487 96157) ******************************************************************************** EST sequence 46 -strand 618 n (File: SGN-E249253-) 1 GAAAAGGGAA AAATAGAAGA AAGAGAAGTT AGTGTTATAT GGGTAATTTG GAGATTGTAT 61 AAAAATATTA AGGGAAAAAA CATAAAAATA TGGTCAACTT AAAACAGCTT ATAAGCTAAA 121 AAAAAAAGGC ACACTTTTGG CTTAAAATAA GTTTTTTTAA CTTAAAATAA GCTATTTTGA 181 GTATTGCCAA ACATTTAAAT AAGTCAAAAA CCAGCTTTTA AGTCAGTTTG ACCAGCTTTT 241 AAGCTGAGCC AAACAGGCTC TAAAGCTCGA GATAGTGAAA CTCTAAGATG ATCAATTAAG 301 GAACTGGTGT TGGTTGTTTT TAGTAGATCT CTTACTTGTT CAAATGCAGG CATGAGGAAG 361 AGGAGTCCAG TTTGAAAGTA GTCAATTTGA AGCTCAAGAA TGTCCCATGG TGTCAACTCA 421 ATAATCTTAC AATTATCTGT ATGGTGCTGA CTTTTTCCCT CAGCTTTAAC CGTCCATTTT 481 GAAATGATGG ATACCTTGGA AGCCATAGCT TTCAATCACC TCTGTATTGG GTAAATCTGA 541 AGTTAAATCA GTGTGCTCAG CGGCGGAACA GCTTAATAAC CGGAAAAGTT GCCGGAAACG 601 GGACTTGAAC TGGTAACC Predicted gene structure (within gDNA segment 97103 to 92000): Exon 1 96428 96157 ( 272 n); cDNA 3 256 ( 254 n); score: 0.904 MATCH C10SLe0045H11.1- SGN-E249253- 0.904 272 0.440 C PGS_C10SLe0045H11.1-_SGN-E249253- (96428 96157) Alignment (genomic DNA sequence = upper lines): AAAAAGAAAA ATAGAAGAAA GAGATGTTAG GGTTATATGG GTAATTTGGA GATTGTATAA 96369 ||| ||||| |||||||||| |||| ||||| ||||||||| |||||||||| |||||||||| AAAGGGAAAA ATAGAAGAAA GAGAAGTTAG TGTTATATGG GTAATTTGGA GATTGTATAA 62 AAATATTAAG GGAAAAAACA TAAAAATGTG GTCAACTTAA AACAGCTTAT AAGCTAAAAA 96309 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ||||| |||| AAATATTAAG GGAAAAAACA TAAAAATATG GTCAACTTAA AACAGCTTAT AAGCT-AAAA 121 AAAAAAGCAC CCCTACCCCA GCTTTTAACT TTTGGCTTAA AATAAGTTTT TTTTAACTTA 96249 ||||||| || | ||| |||||||||| |||||| ||| |||||||||| AAAAAAG--- -------GCA -C-----ACT TTTGGCTTAA AATAAG-TTT TTTTAACTTA 164 AAATAAGCTA TTTTGAGTAT TGCCAAACAG TTAAATAAGT CAAAAACCAG CTTTTAAGTC 96189 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AAATAAGCTA TTTTGAGTAT TGCCAAACAT TTAAATAAGT CAAAAACCAG CTTTTAAGTC 224 AGTTTAACCA GCTTTTAAGC TGAGCCAAAC AG 96157 ||||| |||| |||||||||| |||||||||| || AGTTTGACCA GCTTTTAAGC TGAGCCAAAC AG 256 hqPGS_C10SLe0045H11.1-_SGN-E249253- (96428 96157) ******************************************************************************** EST sequence 59 +strand 528 n (File: SGN-E242674+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAATCATCTA GAGTCGATTG TTAGAAATAG TTGCAACTTG CAACTATGTA 481 ACACAGAGAT AATAATTTTG TCTTTTTACG TATCTCCACT TAAATACC Predicted gene structure (within gDNA segment 97177 to 92210): Exon 1 96406 96157 ( 250 n); cDNA 1 251 ( 251 n); score: 0.902 Intron 1 96156 93745 (2412 n); Pd: 0.682 (s: 0.86), Pa: 0.815 (s: 0) Exon 2 93744 93735 ( 10 n); cDNA 252 260 ( 9 n); score: 0.900 MATCH C10SLe0045H11.1- SGN-E242674+ 0.902 260 0.492 C PGS_C10SLe0045H11.1-_SGN-E242674+ (96406 96157,93744 93735) Alignment (genomic DNA sequence = upper lines): GATGTTAGGG TTATATGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG AAAAAACATA 96347 |||||||| | |||| ||| | |||||||||| |||||||||| |||||||||| ||||| ||| GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAGCACCC CTACCCCAGC 96287 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC CTACCCCAGC 118 TTTTAACTTT TGGCTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGCT ATTTTGAGTA 96230 |||||||||| |||||||||| |||| ||| |||||||||| |||||||| | |||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 178 TTGCCAAACA GTTAAATAAG TCAAAAACCA GCTTTTAAGT CAGTTTAACC AGCTTTTAAG 96170 |||||||||| |||||||| ||||||| || | |||||||| |||||| | | |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 238 CTGAGCCAAA CAGGCTCTAA CTAATTAAAA ACAATAGGCA TATATTATGT ATCAAAAAAC 96110 |||| | ||| || CTGAACTAAA CAA....... .......... .......... .......... .......... 251 TATTTTATAC GATGAGACTA ATTTTATCAT GTCTAATTAT GCAGCAGATT AATTTATTTA 96050 .......... .......... .......... .......... .......... .......... 251 ATTAAAACAA CATCCATAAA GATTTTTCTT GTTAAAATGA GCGAAATGCA ATTAATATAT 95990 .......... .......... .......... .......... .......... .......... 251 TCGAGTTTGA GTTTTGAAAA TGAAAACGCA TGAGATAACT CTCGAGCCAT GTGAATTCAA 95930 .......... .......... .......... .......... .......... .......... 251 ATATGGTCTA TGATGAGATA CTTTTTCCGT CCATTTTTAA TTGTCATAAT ATTTTTTTTA 95870 .......... .......... .......... .......... .......... .......... 251 GAGCCAAATT ATAAGAACTT TAACTAACAT TTTACAAAGT AATTTTTTAA TCGATATGCA 95810 .......... .......... .......... .......... .......... .......... 251 AAAAATTACA ATTTATGTAC CTTTGTATAG TTTTTGAACA TATATTTTTT TTGCTTTAAA 95750 .......... .......... .......... .......... .......... .......... 251 TCAAATTAAT GTAATCTAAT TTAACTTTGA AAATTAATCA AATTGATTTT CGAAAAACGC 95690 .......... .......... .......... .......... .......... .......... 251 AACATGACAA ATAAAAGTAG CCGAATATTG TAGTTAAATT TAATTTTGAA AATTAATCTA 95630 .......... .......... .......... .......... .......... .......... 251 ATTGATTTTC GAAAAATGCA GCATGACAAA TAAAAGTAGA CGAATATTGT AGTTAAATTT 95570 .......... .......... .......... .......... .......... .......... 251 AATTTTAAAA AATTAATCTA ATTGATTTTC AAAAAGCGCA ATATGACAAA TAAAAATAGA 95510 .......... .......... .......... .......... .......... .......... 251 CGAATATTGT AGTTAAATTT AATTTTAAAA ATTAATCCAA TTGATTTTCA AAAAACGCAA 95450 .......... .......... .......... .......... .......... .......... 251 CATGACAAAT AAAAATAAAT AACATATCAT AGTTAAAAAT ATGAATCTAT TTACATAAAT 95390 .......... .......... .......... .......... .......... .......... 251 AAAAAAAAAA TCTTATTAAA AACATACTTT CCATAAATGA GCCCTCCAAT ACGCGTATCT 95330 .......... .......... .......... .......... .......... .......... 251 AGACGGCCTC CAACAAGCCA AACAAAGCAG AAAAAAACAA TTTTATATAT ATATAGAGCC 95270 .......... .......... .......... .......... .......... .......... 251 GCGTATTCTG AGGTCCCAGC AAGGCCTAAT TATACAAAGA GGCTACTGCA TTTTGGTTAA 95210 .......... .......... .......... .......... .......... .......... 251 TTTTCATGCA AAGACTAATT ATACTAAGTT TAATGATCAT TTGGAAGAAC TTTAATGGCA 95150 .......... .......... .......... .......... .......... .......... 251 AATTCAACTT AATTAAACTG GAAAGGCTGC TTGAAAACAG CTGTTTCAAA TTGGGTATGG 95090 .......... .......... .......... .......... .......... .......... 251 AAGTGGGGTT TAGAAATTCA TTCTTGTGGT CCCTTTTTTG CTATCCACAG CCTGTTAAGA 95030 .......... .......... .......... .......... .......... .......... 251 GCTTGCTGTT GGAGTAACCA CTGAAAAAGC TCTTGTTCAT TGTGTTTTGA ATTGGGTATT 94970 .......... .......... .......... .......... .......... .......... 251 TCTTGTTTCT TTCTTCATTT TGGTTTACAC CCATGTCAAA AGATTCAATT TTTAATAATG 94910 .......... .......... .......... .......... .......... .......... 251 GAATTGCACT AAAAAGCTCT TCTTGATTGT GTTTGAATTT GGGTCTTTCT TGTTTCTTCC 94850 .......... .......... .......... .......... .......... .......... 251 TTTTGGTTTA CACCCATGTT AAAAGATTCA ATTTTTCAAG GGGAAGTTCT ACTTGATAGC 94790 .......... .......... .......... .......... .......... .......... 251 TCTTCTTGAC TCTGGTTTTT ATGGTGGATT TGCACTAAAT AACTCTTCTT GATTGTGTTT 94730 .......... .......... .......... .......... .......... .......... 251 ATGTGGTGGC ATTTAGGTGA CTTGACTTAG CTCTTGTTGT TTCTTCCTTC TGGTTCACAC 94670 .......... .......... .......... .......... .......... .......... 251 CCTTTTCAAA AGATTCAATT TTCATGTTGG AGTTGCACTA AAAAGCTGTT CTTGATTGTG 94610 .......... .......... .......... .......... .......... .......... 251 TTTTCATGGT GGCATTGAGG TAATCTGAAT CAAGTCTTCT TGTTTCTTCC TTATGGTTCA 94550 .......... .......... .......... .......... .......... .......... 251 CACCCTTTTC AAAAGATTCA ATTTTTCATG GTGGAGTTGC ACTAAAAAGC TGTTCTTGAT 94490 .......... .......... .......... .......... .......... .......... 251 TGTGTTTTCA TGGTGGCATT GAGGTAATCT GAATGGGGTC TTCTTGTTTC CTCCTTTTGG 94430 .......... .......... .......... .......... .......... .......... 251 TTCACACCCT TTTCAAAAGA TCTAATTTTT TATGGTGTGG TTGCTCTAAA AAGCTGTTCT 94370 .......... .......... .......... .......... .......... .......... 251 TGATTGTGTT TTCATGGTAG CATTGAGGTA ATCTGAATGG GGTATTCTTG TTTCCTCCTT 94310 .......... .......... .......... .......... .......... .......... 251 TTGGTTCACA CCCTTTTCAA AAGATTTAAT TTTTCATGGT GTAGTTGCAC TGAAAAGCTC 94250 .......... .......... .......... .......... .......... .......... 251 AACTGTATTT TCATGGTGGT ATTGAGGTAA CCTTTCTTCT GGTGTACTGT TCGAACTCGG 94190 .......... .......... .......... .......... .......... .......... 251 TAGATAATTG GCACACCCCT TGACCCTTCT CCACTTAAAT ACGAGGCTTT TTGTTATGTC 94130 .......... .......... .......... .......... .......... .......... 251 CGCCTTACTC ACAAATCAGG CATAGGCATT GCACTCTTAC CACTGAACCA AAGCATCTAG 94070 .......... .......... .......... .......... .......... .......... 251 GAGCATTTCC AATCTGAAGT CTAGAGGAAA GTTGTTCGCT CAGATCTTGT CTAACACTAT 94010 .......... .......... .......... .......... .......... .......... 251 TTTTTTCGTG CTTTTGGTGT TAATCATAGT TTATTGGTAG TTTCTTCTGA TTTTTCAGTT 93950 .......... .......... .......... .......... .......... .......... 251 AAGAAAGTTT TTTTTCTGTA TCAAGATTGC TCTAGATAGT TCAGAAAGAT CTATAATGCT 93890 .......... .......... .......... .......... .......... .......... 251 ATAGTGTAGG TTCTTAGTAT CATCTGGGGA ATTGGAACTT AGCTTATTCA GCCACTCTCA 93830 .......... .......... .......... .......... .......... .......... 251 TATCGACATT GAGGCGTAGT TATTGTTGTT GTTGACCTAA CTGGAGCAGT GTTAGAAAGA 93770 .......... .......... .......... .......... .......... .......... 251 ATTGAAGTCC AGTGTTTACC AATAGGCTCT TTAGA 93735 |||| ||||| .......... .......... .....GCTC- TTAGA 260 hqPGS_C10SLe0045H11.1-_SGN-E242674+ (96406 96157) ******************************************************************************** EST sequence 95 +strand 643 n (File: SGN-E233074+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAATCATCTA GAGTCGATTG TTAGAAATAG TTGCAACTTG CAACTATGTA 481 ACACAGAGAT AATAATTTTG TCTTTTTACG TATCTCCACT TAAATACCAG ACATCACTAA 541 CTTAAGTCAC AAACCCCTTG ACCTTCCCAA TTATATTTAA GCACTAGAAA ACTTATATAT 601 AAAAAATCGA ATTTAACGCT TAATATTTAT CAACTAACAC CTA Predicted gene structure (within gDNA segment 97177 to 91060): Exon 1 96406 96157 ( 250 n); cDNA 1 251 ( 251 n); score: 0.902 Intron 1 96156 93745 (2412 n); Pd: 0.682 (s: 0.86), Pa: 0.815 (s: 0) Exon 2 93744 93735 ( 10 n); cDNA 252 260 ( 9 n); score: 0.900 MATCH C10SLe0045H11.1- SGN-E233074+ 0.902 260 0.404 C PGS_C10SLe0045H11.1-_SGN-E233074+ (96406 96157,93744 93735) Alignment (genomic DNA sequence = upper lines): GATGTTAGGG TTATATGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG AAAAAACATA 96347 |||||||| | |||| ||| | |||||||||| |||||||||| |||||||||| ||||| ||| GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAGCACCC CTACCCCAGC 96287 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC CTACCCCAGC 118 TTTTAACTTT TGGCTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGCT ATTTTGAGTA 96230 |||||||||| |||||||||| |||| ||| |||||||||| |||||||| | |||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 178 TTGCCAAACA GTTAAATAAG TCAAAAACCA GCTTTTAAGT CAGTTTAACC AGCTTTTAAG 96170 |||||||||| |||||||| ||||||| || | |||||||| |||||| | | |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 238 CTGAGCCAAA CAGGCTCTAA CTAATTAAAA ACAATAGGCA TATATTATGT ATCAAAAAAC 96110 |||| | ||| || CTGAACTAAA CAA....... .......... .......... .......... .......... 251 TATTTTATAC GATGAGACTA ATTTTATCAT GTCTAATTAT GCAGCAGATT AATTTATTTA 96050 .......... .......... .......... .......... .......... .......... 251 ATTAAAACAA CATCCATAAA GATTTTTCTT GTTAAAATGA GCGAAATGCA ATTAATATAT 95990 .......... .......... .......... .......... .......... .......... 251 TCGAGTTTGA GTTTTGAAAA TGAAAACGCA TGAGATAACT CTCGAGCCAT GTGAATTCAA 95930 .......... .......... .......... .......... .......... .......... 251 ATATGGTCTA TGATGAGATA CTTTTTCCGT CCATTTTTAA TTGTCATAAT ATTTTTTTTA 95870 .......... .......... .......... .......... .......... .......... 251 GAGCCAAATT ATAAGAACTT TAACTAACAT TTTACAAAGT AATTTTTTAA TCGATATGCA 95810 .......... .......... .......... .......... .......... .......... 251 AAAAATTACA ATTTATGTAC CTTTGTATAG TTTTTGAACA TATATTTTTT TTGCTTTAAA 95750 .......... .......... .......... .......... .......... .......... 251 TCAAATTAAT GTAATCTAAT TTAACTTTGA AAATTAATCA AATTGATTTT CGAAAAACGC 95690 .......... .......... .......... .......... .......... .......... 251 AACATGACAA ATAAAAGTAG CCGAATATTG TAGTTAAATT TAATTTTGAA AATTAATCTA 95630 .......... .......... .......... .......... .......... .......... 251 ATTGATTTTC GAAAAATGCA GCATGACAAA TAAAAGTAGA CGAATATTGT AGTTAAATTT 95570 .......... .......... .......... .......... .......... .......... 251 AATTTTAAAA AATTAATCTA ATTGATTTTC AAAAAGCGCA ATATGACAAA TAAAAATAGA 95510 .......... .......... .......... .......... .......... .......... 251 CGAATATTGT AGTTAAATTT AATTTTAAAA ATTAATCCAA TTGATTTTCA AAAAACGCAA 95450 .......... .......... .......... .......... .......... .......... 251 CATGACAAAT AAAAATAAAT AACATATCAT AGTTAAAAAT ATGAATCTAT TTACATAAAT 95390 .......... .......... .......... .......... .......... .......... 251 AAAAAAAAAA TCTTATTAAA AACATACTTT CCATAAATGA GCCCTCCAAT ACGCGTATCT 95330 .......... .......... .......... .......... .......... .......... 251 AGACGGCCTC CAACAAGCCA AACAAAGCAG AAAAAAACAA TTTTATATAT ATATAGAGCC 95270 .......... .......... .......... .......... .......... .......... 251 GCGTATTCTG AGGTCCCAGC AAGGCCTAAT TATACAAAGA GGCTACTGCA TTTTGGTTAA 95210 .......... .......... .......... .......... .......... .......... 251 TTTTCATGCA AAGACTAATT ATACTAAGTT TAATGATCAT TTGGAAGAAC TTTAATGGCA 95150 .......... .......... .......... .......... .......... .......... 251 AATTCAACTT AATTAAACTG GAAAGGCTGC TTGAAAACAG CTGTTTCAAA TTGGGTATGG 95090 .......... .......... .......... .......... .......... .......... 251 AAGTGGGGTT TAGAAATTCA TTCTTGTGGT CCCTTTTTTG CTATCCACAG CCTGTTAAGA 95030 .......... .......... .......... .......... .......... .......... 251 GCTTGCTGTT GGAGTAACCA CTGAAAAAGC TCTTGTTCAT TGTGTTTTGA ATTGGGTATT 94970 .......... .......... .......... .......... .......... .......... 251 TCTTGTTTCT TTCTTCATTT TGGTTTACAC CCATGTCAAA AGATTCAATT TTTAATAATG 94910 .......... .......... .......... .......... .......... .......... 251 GAATTGCACT AAAAAGCTCT TCTTGATTGT GTTTGAATTT GGGTCTTTCT TGTTTCTTCC 94850 .......... .......... .......... .......... .......... .......... 251 TTTTGGTTTA CACCCATGTT AAAAGATTCA ATTTTTCAAG GGGAAGTTCT ACTTGATAGC 94790 .......... .......... .......... .......... .......... .......... 251 TCTTCTTGAC TCTGGTTTTT ATGGTGGATT TGCACTAAAT AACTCTTCTT GATTGTGTTT 94730 .......... .......... .......... .......... .......... .......... 251 ATGTGGTGGC ATTTAGGTGA CTTGACTTAG CTCTTGTTGT TTCTTCCTTC TGGTTCACAC 94670 .......... .......... .......... .......... .......... .......... 251 CCTTTTCAAA AGATTCAATT TTCATGTTGG AGTTGCACTA AAAAGCTGTT CTTGATTGTG 94610 .......... .......... .......... .......... .......... .......... 251 TTTTCATGGT GGCATTGAGG TAATCTGAAT CAAGTCTTCT TGTTTCTTCC TTATGGTTCA 94550 .......... .......... .......... .......... .......... .......... 251 CACCCTTTTC AAAAGATTCA ATTTTTCATG GTGGAGTTGC ACTAAAAAGC TGTTCTTGAT 94490 .......... .......... .......... .......... .......... .......... 251 TGTGTTTTCA TGGTGGCATT GAGGTAATCT GAATGGGGTC TTCTTGTTTC CTCCTTTTGG 94430 .......... .......... .......... .......... .......... .......... 251 TTCACACCCT TTTCAAAAGA TCTAATTTTT TATGGTGTGG TTGCTCTAAA AAGCTGTTCT 94370 .......... .......... .......... .......... .......... .......... 251 TGATTGTGTT TTCATGGTAG CATTGAGGTA ATCTGAATGG GGTATTCTTG TTTCCTCCTT 94310 .......... .......... .......... .......... .......... .......... 251 TTGGTTCACA CCCTTTTCAA AAGATTTAAT TTTTCATGGT GTAGTTGCAC TGAAAAGCTC 94250 .......... .......... .......... .......... .......... .......... 251 AACTGTATTT TCATGGTGGT ATTGAGGTAA CCTTTCTTCT GGTGTACTGT TCGAACTCGG 94190 .......... .......... .......... .......... .......... .......... 251 TAGATAATTG GCACACCCCT TGACCCTTCT CCACTTAAAT ACGAGGCTTT TTGTTATGTC 94130 .......... .......... .......... .......... .......... .......... 251 CGCCTTACTC ACAAATCAGG CATAGGCATT GCACTCTTAC CACTGAACCA AAGCATCTAG 94070 .......... .......... .......... .......... .......... .......... 251 GAGCATTTCC AATCTGAAGT CTAGAGGAAA GTTGTTCGCT CAGATCTTGT CTAACACTAT 94010 .......... .......... .......... .......... .......... .......... 251 TTTTTTCGTG CTTTTGGTGT TAATCATAGT TTATTGGTAG TTTCTTCTGA TTTTTCAGTT 93950 .......... .......... .......... .......... .......... .......... 251 AAGAAAGTTT TTTTTCTGTA TCAAGATTGC TCTAGATAGT TCAGAAAGAT CTATAATGCT 93890 .......... .......... .......... .......... .......... .......... 251 ATAGTGTAGG TTCTTAGTAT CATCTGGGGA ATTGGAACTT AGCTTATTCA GCCACTCTCA 93830 .......... .......... .......... .......... .......... .......... 251 TATCGACATT GAGGCGTAGT TATTGTTGTT GTTGACCTAA CTGGAGCAGT GTTAGAAAGA 93770 .......... .......... .......... .......... .......... .......... 251 ATTGAAGTCC AGTGTTTACC AATAGGCTCT TTAGA 93735 |||| ||||| .......... .......... .....GCTC- TTAGA 260 hqPGS_C10SLe0045H11.1-_SGN-E233074+ (96406 96157) ******************************************************************************** EST sequence 122 +strand 514 n (File: SGN-E233735+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAATCATCTA GAGTCGATTG TTAGAAATAG TTGCAACTTG CAACTATGTA 481 ACACAGAGAT AATAATTTTG TCTTTTTACG TATC Predicted gene structure (within gDNA segment 97177 to 92350): Exon 1 96406 96157 ( 250 n); cDNA 1 251 ( 251 n); score: 0.902 Intron 1 96156 93745 (2412 n); Pd: 0.682 (s: 0.86), Pa: 0.815 (s: 0) Exon 2 93744 93735 ( 10 n); cDNA 252 260 ( 9 n); score: 0.900 MATCH C10SLe0045H11.1- SGN-E233735+ 0.902 260 0.506 C PGS_C10SLe0045H11.1-_SGN-E233735+ (96406 96157,93744 93735) Alignment (genomic DNA sequence = upper lines): GATGTTAGGG TTATATGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG AAAAAACATA 96347 |||||||| | |||| ||| | |||||||||| |||||||||| |||||||||| ||||| ||| GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAGCACCC CTACCCCAGC 96287 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC CTACCCCAGC 118 TTTTAACTTT TGGCTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGCT ATTTTGAGTA 96230 |||||||||| |||||||||| |||| ||| |||||||||| |||||||| | |||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 178 TTGCCAAACA GTTAAATAAG TCAAAAACCA GCTTTTAAGT CAGTTTAACC AGCTTTTAAG 96170 |||||||||| |||||||| ||||||| || | |||||||| |||||| | | |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 238 CTGAGCCAAA CAGGCTCTAA CTAATTAAAA ACAATAGGCA TATATTATGT ATCAAAAAAC 96110 |||| | ||| || CTGAACTAAA CAA....... .......... .......... .......... .......... 251 TATTTTATAC GATGAGACTA ATTTTATCAT GTCTAATTAT GCAGCAGATT AATTTATTTA 96050 .......... .......... .......... .......... .......... .......... 251 ATTAAAACAA CATCCATAAA GATTTTTCTT GTTAAAATGA GCGAAATGCA ATTAATATAT 95990 .......... .......... .......... .......... .......... .......... 251 TCGAGTTTGA GTTTTGAAAA TGAAAACGCA TGAGATAACT CTCGAGCCAT GTGAATTCAA 95930 .......... .......... .......... .......... .......... .......... 251 ATATGGTCTA TGATGAGATA CTTTTTCCGT CCATTTTTAA TTGTCATAAT ATTTTTTTTA 95870 .......... .......... .......... .......... .......... .......... 251 GAGCCAAATT ATAAGAACTT TAACTAACAT TTTACAAAGT AATTTTTTAA TCGATATGCA 95810 .......... .......... .......... .......... .......... .......... 251 AAAAATTACA ATTTATGTAC CTTTGTATAG TTTTTGAACA TATATTTTTT TTGCTTTAAA 95750 .......... .......... .......... .......... .......... .......... 251 TCAAATTAAT GTAATCTAAT TTAACTTTGA AAATTAATCA AATTGATTTT CGAAAAACGC 95690 .......... .......... .......... .......... .......... .......... 251 AACATGACAA ATAAAAGTAG CCGAATATTG TAGTTAAATT TAATTTTGAA AATTAATCTA 95630 .......... .......... .......... .......... .......... .......... 251 ATTGATTTTC GAAAAATGCA GCATGACAAA TAAAAGTAGA CGAATATTGT AGTTAAATTT 95570 .......... .......... .......... .......... .......... .......... 251 AATTTTAAAA AATTAATCTA ATTGATTTTC AAAAAGCGCA ATATGACAAA TAAAAATAGA 95510 .......... .......... .......... .......... .......... .......... 251 CGAATATTGT AGTTAAATTT AATTTTAAAA ATTAATCCAA TTGATTTTCA AAAAACGCAA 95450 .......... .......... .......... .......... .......... .......... 251 CATGACAAAT AAAAATAAAT AACATATCAT AGTTAAAAAT ATGAATCTAT TTACATAAAT 95390 .......... .......... .......... .......... .......... .......... 251 AAAAAAAAAA TCTTATTAAA AACATACTTT CCATAAATGA GCCCTCCAAT ACGCGTATCT 95330 .......... .......... .......... .......... .......... .......... 251 AGACGGCCTC CAACAAGCCA AACAAAGCAG AAAAAAACAA TTTTATATAT ATATAGAGCC 95270 .......... .......... .......... .......... .......... .......... 251 GCGTATTCTG AGGTCCCAGC AAGGCCTAAT TATACAAAGA GGCTACTGCA TTTTGGTTAA 95210 .......... .......... .......... .......... .......... .......... 251 TTTTCATGCA AAGACTAATT ATACTAAGTT TAATGATCAT TTGGAAGAAC TTTAATGGCA 95150 .......... .......... .......... .......... .......... .......... 251 AATTCAACTT AATTAAACTG GAAAGGCTGC TTGAAAACAG CTGTTTCAAA TTGGGTATGG 95090 .......... .......... .......... .......... .......... .......... 251 AAGTGGGGTT TAGAAATTCA TTCTTGTGGT CCCTTTTTTG CTATCCACAG CCTGTTAAGA 95030 .......... .......... .......... .......... .......... .......... 251 GCTTGCTGTT GGAGTAACCA CTGAAAAAGC TCTTGTTCAT TGTGTTTTGA ATTGGGTATT 94970 .......... .......... .......... .......... .......... .......... 251 TCTTGTTTCT TTCTTCATTT TGGTTTACAC CCATGTCAAA AGATTCAATT TTTAATAATG 94910 .......... .......... .......... .......... .......... .......... 251 GAATTGCACT AAAAAGCTCT TCTTGATTGT GTTTGAATTT GGGTCTTTCT TGTTTCTTCC 94850 .......... .......... .......... .......... .......... .......... 251 TTTTGGTTTA CACCCATGTT AAAAGATTCA ATTTTTCAAG GGGAAGTTCT ACTTGATAGC 94790 .......... .......... .......... .......... .......... .......... 251 TCTTCTTGAC TCTGGTTTTT ATGGTGGATT TGCACTAAAT AACTCTTCTT GATTGTGTTT 94730 .......... .......... .......... .......... .......... .......... 251 ATGTGGTGGC ATTTAGGTGA CTTGACTTAG CTCTTGTTGT TTCTTCCTTC TGGTTCACAC 94670 .......... .......... .......... .......... .......... .......... 251 CCTTTTCAAA AGATTCAATT TTCATGTTGG AGTTGCACTA AAAAGCTGTT CTTGATTGTG 94610 .......... .......... .......... .......... .......... .......... 251 TTTTCATGGT GGCATTGAGG TAATCTGAAT CAAGTCTTCT TGTTTCTTCC TTATGGTTCA 94550 .......... .......... .......... .......... .......... .......... 251 CACCCTTTTC AAAAGATTCA ATTTTTCATG GTGGAGTTGC ACTAAAAAGC TGTTCTTGAT 94490 .......... .......... .......... .......... .......... .......... 251 TGTGTTTTCA TGGTGGCATT GAGGTAATCT GAATGGGGTC TTCTTGTTTC CTCCTTTTGG 94430 .......... .......... .......... .......... .......... .......... 251 TTCACACCCT TTTCAAAAGA TCTAATTTTT TATGGTGTGG TTGCTCTAAA AAGCTGTTCT 94370 .......... .......... .......... .......... .......... .......... 251 TGATTGTGTT TTCATGGTAG CATTGAGGTA ATCTGAATGG GGTATTCTTG TTTCCTCCTT 94310 .......... .......... .......... .......... .......... .......... 251 TTGGTTCACA CCCTTTTCAA AAGATTTAAT TTTTCATGGT GTAGTTGCAC TGAAAAGCTC 94250 .......... .......... .......... .......... .......... .......... 251 AACTGTATTT TCATGGTGGT ATTGAGGTAA CCTTTCTTCT GGTGTACTGT TCGAACTCGG 94190 .......... .......... .......... .......... .......... .......... 251 TAGATAATTG GCACACCCCT TGACCCTTCT CCACTTAAAT ACGAGGCTTT TTGTTATGTC 94130 .......... .......... .......... .......... .......... .......... 251 CGCCTTACTC ACAAATCAGG CATAGGCATT GCACTCTTAC CACTGAACCA AAGCATCTAG 94070 .......... .......... .......... .......... .......... .......... 251 GAGCATTTCC AATCTGAAGT CTAGAGGAAA GTTGTTCGCT CAGATCTTGT CTAACACTAT 94010 .......... .......... .......... .......... .......... .......... 251 TTTTTTCGTG CTTTTGGTGT TAATCATAGT TTATTGGTAG TTTCTTCTGA TTTTTCAGTT 93950 .......... .......... .......... .......... .......... .......... 251 AAGAAAGTTT TTTTTCTGTA TCAAGATTGC TCTAGATAGT TCAGAAAGAT CTATAATGCT 93890 .......... .......... .......... .......... .......... .......... 251 ATAGTGTAGG TTCTTAGTAT CATCTGGGGA ATTGGAACTT AGCTTATTCA GCCACTCTCA 93830 .......... .......... .......... .......... .......... .......... 251 TATCGACATT GAGGCGTAGT TATTGTTGTT GTTGACCTAA CTGGAGCAGT GTTAGAAAGA 93770 .......... .......... .......... .......... .......... .......... 251 ATTGAAGTCC AGTGTTTACC AATAGGCTCT TTAGA 93735 |||| ||||| .......... .......... .....GCTC- TTAGA 260 hqPGS_C10SLe0045H11.1-_SGN-E233735+ (96406 96157) ******************************************************************************** EST sequence 123 +strand 484 n (File: SGN-E377238+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAATCATCTA GAGTCGATTG TTAGAAATAG TTGCAACTTG CAACTATGTA 481 ACAC Predicted gene structure (within gDNA segment 97177 to 92650): Exon 1 96406 96157 ( 250 n); cDNA 1 251 ( 251 n); score: 0.902 Intron 1 96156 93745 (2412 n); Pd: 0.682 (s: 0.86), Pa: 0.815 (s: 0) Exon 2 93744 93735 ( 10 n); cDNA 252 260 ( 9 n); score: 0.900 MATCH C10SLe0045H11.1- SGN-E377238+ 0.902 260 0.537 C PGS_C10SLe0045H11.1-_SGN-E377238+ (96406 96157,93744 93735) Alignment (genomic DNA sequence = upper lines): GATGTTAGGG TTATATGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG AAAAAACATA 96347 |||||||| | |||| ||| | |||||||||| |||||||||| |||||||||| ||||| ||| GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAGCACCC CTACCCCAGC 96287 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC CTACCCCAGC 118 TTTTAACTTT TGGCTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGCT ATTTTGAGTA 96230 |||||||||| |||||||||| |||| ||| |||||||||| |||||||| | |||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 178 TTGCCAAACA GTTAAATAAG TCAAAAACCA GCTTTTAAGT CAGTTTAACC AGCTTTTAAG 96170 |||||||||| |||||||| ||||||| || | |||||||| |||||| | | |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 238 CTGAGCCAAA CAGGCTCTAA CTAATTAAAA ACAATAGGCA TATATTATGT ATCAAAAAAC 96110 |||| | ||| || CTGAACTAAA CAA....... .......... .......... .......... .......... 251 TATTTTATAC GATGAGACTA ATTTTATCAT GTCTAATTAT GCAGCAGATT AATTTATTTA 96050 .......... .......... .......... .......... .......... .......... 251 ATTAAAACAA CATCCATAAA GATTTTTCTT GTTAAAATGA GCGAAATGCA ATTAATATAT 95990 .......... .......... .......... .......... .......... .......... 251 TCGAGTTTGA GTTTTGAAAA TGAAAACGCA TGAGATAACT CTCGAGCCAT GTGAATTCAA 95930 .......... .......... .......... .......... .......... .......... 251 ATATGGTCTA TGATGAGATA CTTTTTCCGT CCATTTTTAA TTGTCATAAT ATTTTTTTTA 95870 .......... .......... .......... .......... .......... .......... 251 GAGCCAAATT ATAAGAACTT TAACTAACAT TTTACAAAGT AATTTTTTAA TCGATATGCA 95810 .......... .......... .......... .......... .......... .......... 251 AAAAATTACA ATTTATGTAC CTTTGTATAG TTTTTGAACA TATATTTTTT TTGCTTTAAA 95750 .......... .......... .......... .......... .......... .......... 251 TCAAATTAAT GTAATCTAAT TTAACTTTGA AAATTAATCA AATTGATTTT CGAAAAACGC 95690 .......... .......... .......... .......... .......... .......... 251 AACATGACAA ATAAAAGTAG CCGAATATTG TAGTTAAATT TAATTTTGAA AATTAATCTA 95630 .......... .......... .......... .......... .......... .......... 251 ATTGATTTTC GAAAAATGCA GCATGACAAA TAAAAGTAGA CGAATATTGT AGTTAAATTT 95570 .......... .......... .......... .......... .......... .......... 251 AATTTTAAAA AATTAATCTA ATTGATTTTC AAAAAGCGCA ATATGACAAA TAAAAATAGA 95510 .......... .......... .......... .......... .......... .......... 251 CGAATATTGT AGTTAAATTT AATTTTAAAA ATTAATCCAA TTGATTTTCA AAAAACGCAA 95450 .......... .......... .......... .......... .......... .......... 251 CATGACAAAT AAAAATAAAT AACATATCAT AGTTAAAAAT ATGAATCTAT TTACATAAAT 95390 .......... .......... .......... .......... .......... .......... 251 AAAAAAAAAA TCTTATTAAA AACATACTTT CCATAAATGA GCCCTCCAAT ACGCGTATCT 95330 .......... .......... .......... .......... .......... .......... 251 AGACGGCCTC CAACAAGCCA AACAAAGCAG AAAAAAACAA TTTTATATAT ATATAGAGCC 95270 .......... .......... .......... .......... .......... .......... 251 GCGTATTCTG AGGTCCCAGC AAGGCCTAAT TATACAAAGA GGCTACTGCA TTTTGGTTAA 95210 .......... .......... .......... .......... .......... .......... 251 TTTTCATGCA AAGACTAATT ATACTAAGTT TAATGATCAT TTGGAAGAAC TTTAATGGCA 95150 .......... .......... .......... .......... .......... .......... 251 AATTCAACTT AATTAAACTG GAAAGGCTGC TTGAAAACAG CTGTTTCAAA TTGGGTATGG 95090 .......... .......... .......... .......... .......... .......... 251 AAGTGGGGTT TAGAAATTCA TTCTTGTGGT CCCTTTTTTG CTATCCACAG CCTGTTAAGA 95030 .......... .......... .......... .......... .......... .......... 251 GCTTGCTGTT GGAGTAACCA CTGAAAAAGC TCTTGTTCAT TGTGTTTTGA ATTGGGTATT 94970 .......... .......... .......... .......... .......... .......... 251 TCTTGTTTCT TTCTTCATTT TGGTTTACAC CCATGTCAAA AGATTCAATT TTTAATAATG 94910 .......... .......... .......... .......... .......... .......... 251 GAATTGCACT AAAAAGCTCT TCTTGATTGT GTTTGAATTT GGGTCTTTCT TGTTTCTTCC 94850 .......... .......... .......... .......... .......... .......... 251 TTTTGGTTTA CACCCATGTT AAAAGATTCA ATTTTTCAAG GGGAAGTTCT ACTTGATAGC 94790 .......... .......... .......... .......... .......... .......... 251 TCTTCTTGAC TCTGGTTTTT ATGGTGGATT TGCACTAAAT AACTCTTCTT GATTGTGTTT 94730 .......... .......... .......... .......... .......... .......... 251 ATGTGGTGGC ATTTAGGTGA CTTGACTTAG CTCTTGTTGT TTCTTCCTTC TGGTTCACAC 94670 .......... .......... .......... .......... .......... .......... 251 CCTTTTCAAA AGATTCAATT TTCATGTTGG AGTTGCACTA AAAAGCTGTT CTTGATTGTG 94610 .......... .......... .......... .......... .......... .......... 251 TTTTCATGGT GGCATTGAGG TAATCTGAAT CAAGTCTTCT TGTTTCTTCC TTATGGTTCA 94550 .......... .......... .......... .......... .......... .......... 251 CACCCTTTTC AAAAGATTCA ATTTTTCATG GTGGAGTTGC ACTAAAAAGC TGTTCTTGAT 94490 .......... .......... .......... .......... .......... .......... 251 TGTGTTTTCA TGGTGGCATT GAGGTAATCT GAATGGGGTC TTCTTGTTTC CTCCTTTTGG 94430 .......... .......... .......... .......... .......... .......... 251 TTCACACCCT TTTCAAAAGA TCTAATTTTT TATGGTGTGG TTGCTCTAAA AAGCTGTTCT 94370 .......... .......... .......... .......... .......... .......... 251 TGATTGTGTT TTCATGGTAG CATTGAGGTA ATCTGAATGG GGTATTCTTG TTTCCTCCTT 94310 .......... .......... .......... .......... .......... .......... 251 TTGGTTCACA CCCTTTTCAA AAGATTTAAT TTTTCATGGT GTAGTTGCAC TGAAAAGCTC 94250 .......... .......... .......... .......... .......... .......... 251 AACTGTATTT TCATGGTGGT ATTGAGGTAA CCTTTCTTCT GGTGTACTGT TCGAACTCGG 94190 .......... .......... .......... .......... .......... .......... 251 TAGATAATTG GCACACCCCT TGACCCTTCT CCACTTAAAT ACGAGGCTTT TTGTTATGTC 94130 .......... .......... .......... .......... .......... .......... 251 CGCCTTACTC ACAAATCAGG CATAGGCATT GCACTCTTAC CACTGAACCA AAGCATCTAG 94070 .......... .......... .......... .......... .......... .......... 251 GAGCATTTCC AATCTGAAGT CTAGAGGAAA GTTGTTCGCT CAGATCTTGT CTAACACTAT 94010 .......... .......... .......... .......... .......... .......... 251 TTTTTTCGTG CTTTTGGTGT TAATCATAGT TTATTGGTAG TTTCTTCTGA TTTTTCAGTT 93950 .......... .......... .......... .......... .......... .......... 251 AAGAAAGTTT TTTTTCTGTA TCAAGATTGC TCTAGATAGT TCAGAAAGAT CTATAATGCT 93890 .......... .......... .......... .......... .......... .......... 251 ATAGTGTAGG TTCTTAGTAT CATCTGGGGA ATTGGAACTT AGCTTATTCA GCCACTCTCA 93830 .......... .......... .......... .......... .......... .......... 251 TATCGACATT GAGGCGTAGT TATTGTTGTT GTTGACCTAA CTGGAGCAGT GTTAGAAAGA 93770 .......... .......... .......... .......... .......... .......... 251 ATTGAAGTCC AGTGTTTACC AATAGGCTCT TTAGA 93735 |||| ||||| .......... .......... .....GCTC- TTAGA 260 hqPGS_C10SLe0045H11.1-_SGN-E377238+ (96406 96157) ******************************************************************************** EST sequence 144 +strand 434 n (File: SGN-E240879+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG TTTGAGGCAG TTCTCAACCA TGTAACCTAA GTCACAAATT TATGAGTTTC 361 CAATTTATGC ACTTTGGTTA AAAAAATAAC TATTCATATA AATTTCTTTT TTTATTATTT 421 TAATCGAAAA AAAT Predicted gene structure (within gDNA segment 97177 to 92550): Exon 1 96406 96157 ( 250 n); cDNA 1 251 ( 251 n); score: 0.902 Intron 1 96156 93745 (2412 n); Pd: 0.682 (s: 0.86), Pa: 0.815 (s: 0) Exon 2 93744 93735 ( 10 n); cDNA 252 260 ( 9 n); score: 0.900 MATCH C10SLe0045H11.1- SGN-E240879+ 0.902 260 0.599 C PGS_C10SLe0045H11.1-_SGN-E240879+ (96406 96157,93744 93735) Alignment (genomic DNA sequence = upper lines): GATGTTAGGG TTATATGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG AAAAAACATA 96347 |||||||| | |||| ||| | |||||||||| |||||||||| |||||||||| ||||| ||| GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAGCACCC CTACCCCAGC 96287 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC CTACCCCAGC 118 TTTTAACTTT TGGCTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGCT ATTTTGAGTA 96230 |||||||||| |||||||||| |||| ||| |||||||||| |||||||| | |||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 178 TTGCCAAACA GTTAAATAAG TCAAAAACCA GCTTTTAAGT CAGTTTAACC AGCTTTTAAG 96170 |||||||||| |||||||| ||||||| || | |||||||| |||||| | | |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 238 CTGAGCCAAA CAGGCTCTAA CTAATTAAAA ACAATAGGCA TATATTATGT ATCAAAAAAC 96110 |||| | ||| || CTGAACTAAA CAA....... .......... .......... .......... .......... 251 TATTTTATAC GATGAGACTA ATTTTATCAT GTCTAATTAT GCAGCAGATT AATTTATTTA 96050 .......... .......... .......... .......... .......... .......... 251 ATTAAAACAA CATCCATAAA GATTTTTCTT GTTAAAATGA GCGAAATGCA ATTAATATAT 95990 .......... .......... .......... .......... .......... .......... 251 TCGAGTTTGA GTTTTGAAAA TGAAAACGCA TGAGATAACT CTCGAGCCAT GTGAATTCAA 95930 .......... .......... .......... .......... .......... .......... 251 ATATGGTCTA TGATGAGATA CTTTTTCCGT CCATTTTTAA TTGTCATAAT ATTTTTTTTA 95870 .......... .......... .......... .......... .......... .......... 251 GAGCCAAATT ATAAGAACTT TAACTAACAT TTTACAAAGT AATTTTTTAA TCGATATGCA 95810 .......... .......... .......... .......... .......... .......... 251 AAAAATTACA ATTTATGTAC CTTTGTATAG TTTTTGAACA TATATTTTTT TTGCTTTAAA 95750 .......... .......... .......... .......... .......... .......... 251 TCAAATTAAT GTAATCTAAT TTAACTTTGA AAATTAATCA AATTGATTTT CGAAAAACGC 95690 .......... .......... .......... .......... .......... .......... 251 AACATGACAA ATAAAAGTAG CCGAATATTG TAGTTAAATT TAATTTTGAA AATTAATCTA 95630 .......... .......... .......... .......... .......... .......... 251 ATTGATTTTC GAAAAATGCA GCATGACAAA TAAAAGTAGA CGAATATTGT AGTTAAATTT 95570 .......... .......... .......... .......... .......... .......... 251 AATTTTAAAA AATTAATCTA ATTGATTTTC AAAAAGCGCA ATATGACAAA TAAAAATAGA 95510 .......... .......... .......... .......... .......... .......... 251 CGAATATTGT AGTTAAATTT AATTTTAAAA ATTAATCCAA TTGATTTTCA AAAAACGCAA 95450 .......... .......... .......... .......... .......... .......... 251 CATGACAAAT AAAAATAAAT AACATATCAT AGTTAAAAAT ATGAATCTAT TTACATAAAT 95390 .......... .......... .......... .......... .......... .......... 251 AAAAAAAAAA TCTTATTAAA AACATACTTT CCATAAATGA GCCCTCCAAT ACGCGTATCT 95330 .......... .......... .......... .......... .......... .......... 251 AGACGGCCTC CAACAAGCCA AACAAAGCAG AAAAAAACAA TTTTATATAT ATATAGAGCC 95270 .......... .......... .......... .......... .......... .......... 251 GCGTATTCTG AGGTCCCAGC AAGGCCTAAT TATACAAAGA GGCTACTGCA TTTTGGTTAA 95210 .......... .......... .......... .......... .......... .......... 251 TTTTCATGCA AAGACTAATT ATACTAAGTT TAATGATCAT TTGGAAGAAC TTTAATGGCA 95150 .......... .......... .......... .......... .......... .......... 251 AATTCAACTT AATTAAACTG GAAAGGCTGC TTGAAAACAG CTGTTTCAAA TTGGGTATGG 95090 .......... .......... .......... .......... .......... .......... 251 AAGTGGGGTT TAGAAATTCA TTCTTGTGGT CCCTTTTTTG CTATCCACAG CCTGTTAAGA 95030 .......... .......... .......... .......... .......... .......... 251 GCTTGCTGTT GGAGTAACCA CTGAAAAAGC TCTTGTTCAT TGTGTTTTGA ATTGGGTATT 94970 .......... .......... .......... .......... .......... .......... 251 TCTTGTTTCT TTCTTCATTT TGGTTTACAC CCATGTCAAA AGATTCAATT TTTAATAATG 94910 .......... .......... .......... .......... .......... .......... 251 GAATTGCACT AAAAAGCTCT TCTTGATTGT GTTTGAATTT GGGTCTTTCT TGTTTCTTCC 94850 .......... .......... .......... .......... .......... .......... 251 TTTTGGTTTA CACCCATGTT AAAAGATTCA ATTTTTCAAG GGGAAGTTCT ACTTGATAGC 94790 .......... .......... .......... .......... .......... .......... 251 TCTTCTTGAC TCTGGTTTTT ATGGTGGATT TGCACTAAAT AACTCTTCTT GATTGTGTTT 94730 .......... .......... .......... .......... .......... .......... 251 ATGTGGTGGC ATTTAGGTGA CTTGACTTAG CTCTTGTTGT TTCTTCCTTC TGGTTCACAC 94670 .......... .......... .......... .......... .......... .......... 251 CCTTTTCAAA AGATTCAATT TTCATGTTGG AGTTGCACTA AAAAGCTGTT CTTGATTGTG 94610 .......... .......... .......... .......... .......... .......... 251 TTTTCATGGT GGCATTGAGG TAATCTGAAT CAAGTCTTCT TGTTTCTTCC TTATGGTTCA 94550 .......... .......... .......... .......... .......... .......... 251 CACCCTTTTC AAAAGATTCA ATTTTTCATG GTGGAGTTGC ACTAAAAAGC TGTTCTTGAT 94490 .......... .......... .......... .......... .......... .......... 251 TGTGTTTTCA TGGTGGCATT GAGGTAATCT GAATGGGGTC TTCTTGTTTC CTCCTTTTGG 94430 .......... .......... .......... .......... .......... .......... 251 TTCACACCCT TTTCAAAAGA TCTAATTTTT TATGGTGTGG TTGCTCTAAA AAGCTGTTCT 94370 .......... .......... .......... .......... .......... .......... 251 TGATTGTGTT TTCATGGTAG CATTGAGGTA ATCTGAATGG GGTATTCTTG TTTCCTCCTT 94310 .......... .......... .......... .......... .......... .......... 251 TTGGTTCACA CCCTTTTCAA AAGATTTAAT TTTTCATGGT GTAGTTGCAC TGAAAAGCTC 94250 .......... .......... .......... .......... .......... .......... 251 AACTGTATTT TCATGGTGGT ATTGAGGTAA CCTTTCTTCT GGTGTACTGT TCGAACTCGG 94190 .......... .......... .......... .......... .......... .......... 251 TAGATAATTG GCACACCCCT TGACCCTTCT CCACTTAAAT ACGAGGCTTT TTGTTATGTC 94130 .......... .......... .......... .......... .......... .......... 251 CGCCTTACTC ACAAATCAGG CATAGGCATT GCACTCTTAC CACTGAACCA AAGCATCTAG 94070 .......... .......... .......... .......... .......... .......... 251 GAGCATTTCC AATCTGAAGT CTAGAGGAAA GTTGTTCGCT CAGATCTTGT CTAACACTAT 94010 .......... .......... .......... .......... .......... .......... 251 TTTTTTCGTG CTTTTGGTGT TAATCATAGT TTATTGGTAG TTTCTTCTGA TTTTTCAGTT 93950 .......... .......... .......... .......... .......... .......... 251 AAGAAAGTTT TTTTTCTGTA TCAAGATTGC TCTAGATAGT TCAGAAAGAT CTATAATGCT 93890 .......... .......... .......... .......... .......... .......... 251 ATAGTGTAGG TTCTTAGTAT CATCTGGGGA ATTGGAACTT AGCTTATTCA GCCACTCTCA 93830 .......... .......... .......... .......... .......... .......... 251 TATCGACATT GAGGCGTAGT TATTGTTGTT GTTGACCTAA CTGGAGCAGT GTTAGAAAGA 93770 .......... .......... .......... .......... .......... .......... 251 ATTGAAGTCC AGTGTTTACC AATAGGCTCT TTAGA 93735 |||| ||||| .......... .......... .....GCTC- TTAGA 260 hqPGS_C10SLe0045H11.1-_SGN-E240879+ (96406 96157) ******************************************************************************** EST sequence 129 +strand 666 n (File: SGN-E237992+) 1 ATGTTAGAGT TATGTGGATA ATTTGGAGAT TGTATAAAAA TATTAAGGGC AAAAAGATAA 61 AAATGTGGTC AACTTAAAAC AGCTTATAAG CTAAAAAAAA AGCACCCCTA CCCCAGCTTT 121 TAACTTTTGG CTTAAAATAA GTTTTTTTTT TTAACTTAAA ATAAGTTATT TTGAGTATTG 181 CCAAACAACT AAATAAGTCA AAAATCAGTT TTTAAGTCAG TTTGATCAGC TTTTAAGCTG 241 AACTAAACAA GCTCTTAGAC AATAATTTTT TCTTTTACGT ATCTCCACTT AAATAGTAGA 301 CATTATAAGT TTGAGGCAGT TCTCAACCAT GTAACCTAAG TCACAAATTT ATGAGTTTCC 361 AATTTATGCA CTTTGGTTAA AAAAATAACT ATTCATATAA ATTTCTTTTT TTATTATTTT 421 AATCGAAAAA AATCATCTAG AGTCGATTGT TAGAAATAGT TGCAACTTGC AACTATGTAA 481 CACAGAGATA ATAATTTTGT CTTTTTACGT ATCTCCACTT AAATACCAGA CATCACTAAC 541 TTAAGTCACA AACCCCTTGA CCTTCCCAAT TATATTTAAG CACTAGAAAA CTTATATATA 601 AAAAATCGAA TTTAACGCTT AATATTTATC AACTAACACC TAATTGTCTT TTGTTTCATT 661 TGGAAA Predicted gene structure (within gDNA segment 97167 to 90820): Exon 1 96405 96157 ( 249 n); cDNA 1 250 ( 250 n); score: 0.902 Intron 1 96156 93745 (2412 n); Pd: 0.682 (s: 0.86), Pa: 0.815 (s: 0) Exon 2 93744 93735 ( 10 n); cDNA 251 259 ( 9 n); score: 0.900 MATCH C10SLe0045H11.1- SGN-E237992+ 0.902 259 0.389 C PGS_C10SLe0045H11.1-_SGN-E237992+ (96405 96157,93744 93735) Alignment (genomic DNA sequence = upper lines): ATGTTAGGGT TATATGGGTA ATTTGGAGAT TGTATAAAAA TATTAAGGGA AAAAACATAA 96346 ||||||| || ||| ||| || |||||||||| |||||||||| ||||||||| ||||| |||| ATGTTAGAGT TATGTGGATA ATTTGGAGAT TGTATAAAAA TATTAAGGGC AAAAAGATAA 60 AAATGTGGTC AACTTAAAAC AGCTTATAAG CTAAAAAAAA AAAGCACCCC TACCCCAGCT 96286 |||||||||| |||||||||| |||||||||| || |||||| |||||||||| |||||||||| AAATGTGGTC AACTTAAAAC AGCTTATAAG CT--AAAAAA AAAGCACCCC TACCCCAGCT 118 TTTAACTTTT GGCTTAAAAT AAG---TTTT TTTTAACTTA AAATAAGCTA TTTTGAGTAT 96229 |||||||||| |||||||||| ||| |||| |||||||||| ||||||| || |||||||||| TTTAACTTTT GGCTTAAAAT AAGTTTTTTT TTTTAACTTA AAATAAGTTA TTTTGAGTAT 178 TGCCAAACAG TTAAATAAGT CAAAAACCAG CTTTTAAGTC AGTTTAACCA GCTTTTAAGC 96169 ||||||||| ||||||||| |||||| ||| ||||||||| ||||| | || |||||||||| TGCCAAACAA CTAAATAAGT CAAAAATCAG TTTTTAAGTC AGTTTGATCA GCTTTTAAGC 238 TGAGCCAAAC AGGCTCTAAC TAATTAAAAA CAATAGGCAT ATATTATGTA TCAAAAAACT 96109 ||| | |||| | TGAACTAAAC AA........ .......... .......... .......... .......... 250 ATTTTATACG ATGAGACTAA TTTTATCATG TCTAATTATG CAGCAGATTA ATTTATTTAA 96049 .......... .......... .......... .......... .......... .......... 250 TTAAAACAAC ATCCATAAAG ATTTTTCTTG TTAAAATGAG CGAAATGCAA TTAATATATT 95989 .......... .......... .......... .......... .......... .......... 250 CGAGTTTGAG TTTTGAAAAT GAAAACGCAT GAGATAACTC TCGAGCCATG TGAATTCAAA 95929 .......... .......... .......... .......... .......... .......... 250 TATGGTCTAT GATGAGATAC TTTTTCCGTC CATTTTTAAT TGTCATAATA TTTTTTTTAG 95869 .......... .......... .......... .......... .......... .......... 250 AGCCAAATTA TAAGAACTTT AACTAACATT TTACAAAGTA ATTTTTTAAT CGATATGCAA 95809 .......... .......... .......... .......... .......... .......... 250 AAAATTACAA TTTATGTACC TTTGTATAGT TTTTGAACAT ATATTTTTTT TGCTTTAAAT 95749 .......... .......... .......... .......... .......... .......... 250 CAAATTAATG TAATCTAATT TAACTTTGAA AATTAATCAA ATTGATTTTC GAAAAACGCA 95689 .......... .......... .......... .......... .......... .......... 250 ACATGACAAA TAAAAGTAGC CGAATATTGT AGTTAAATTT AATTTTGAAA ATTAATCTAA 95629 .......... .......... .......... .......... .......... .......... 250 TTGATTTTCG AAAAATGCAG CATGACAAAT AAAAGTAGAC GAATATTGTA GTTAAATTTA 95569 .......... .......... .......... .......... .......... .......... 250 ATTTTAAAAA ATTAATCTAA TTGATTTTCA AAAAGCGCAA TATGACAAAT AAAAATAGAC 95509 .......... .......... .......... .......... .......... .......... 250 GAATATTGTA GTTAAATTTA ATTTTAAAAA TTAATCCAAT TGATTTTCAA AAAACGCAAC 95449 .......... .......... .......... .......... .......... .......... 250 ATGACAAATA AAAATAAATA ACATATCATA GTTAAAAATA TGAATCTATT TACATAAATA 95389 .......... .......... .......... .......... .......... .......... 250 AAAAAAAAAT CTTATTAAAA ACATACTTTC CATAAATGAG CCCTCCAATA CGCGTATCTA 95329 .......... .......... .......... .......... .......... .......... 250 GACGGCCTCC AACAAGCCAA ACAAAGCAGA AAAAAACAAT TTTATATATA TATAGAGCCG 95269 .......... .......... .......... .......... .......... .......... 250 CGTATTCTGA GGTCCCAGCA AGGCCTAATT ATACAAAGAG GCTACTGCAT TTTGGTTAAT 95209 .......... .......... .......... .......... .......... .......... 250 TTTCATGCAA AGACTAATTA TACTAAGTTT AATGATCATT TGGAAGAACT TTAATGGCAA 95149 .......... .......... .......... .......... .......... .......... 250 ATTCAACTTA ATTAAACTGG AAAGGCTGCT TGAAAACAGC TGTTTCAAAT TGGGTATGGA 95089 .......... .......... .......... .......... .......... .......... 250 AGTGGGGTTT AGAAATTCAT TCTTGTGGTC CCTTTTTTGC TATCCACAGC CTGTTAAGAG 95029 .......... .......... .......... .......... .......... .......... 250 CTTGCTGTTG GAGTAACCAC TGAAAAAGCT CTTGTTCATT GTGTTTTGAA TTGGGTATTT 94969 .......... .......... .......... .......... .......... .......... 250 CTTGTTTCTT TCTTCATTTT GGTTTACACC CATGTCAAAA GATTCAATTT TTAATAATGG 94909 .......... .......... .......... .......... .......... .......... 250 AATTGCACTA AAAAGCTCTT CTTGATTGTG TTTGAATTTG GGTCTTTCTT GTTTCTTCCT 94849 .......... .......... .......... .......... .......... .......... 250 TTTGGTTTAC ACCCATGTTA AAAGATTCAA TTTTTCAAGG GGAAGTTCTA CTTGATAGCT 94789 .......... .......... .......... .......... .......... .......... 250 CTTCTTGACT CTGGTTTTTA TGGTGGATTT GCACTAAATA ACTCTTCTTG ATTGTGTTTA 94729 .......... .......... .......... .......... .......... .......... 250 TGTGGTGGCA TTTAGGTGAC TTGACTTAGC TCTTGTTGTT TCTTCCTTCT GGTTCACACC 94669 .......... .......... .......... .......... .......... .......... 250 CTTTTCAAAA GATTCAATTT TCATGTTGGA GTTGCACTAA AAAGCTGTTC TTGATTGTGT 94609 .......... .......... .......... .......... .......... .......... 250 TTTCATGGTG GCATTGAGGT AATCTGAATC AAGTCTTCTT GTTTCTTCCT TATGGTTCAC 94549 .......... .......... .......... .......... .......... .......... 250 ACCCTTTTCA AAAGATTCAA TTTTTCATGG TGGAGTTGCA CTAAAAAGCT GTTCTTGATT 94489 .......... .......... .......... .......... .......... .......... 250 GTGTTTTCAT GGTGGCATTG AGGTAATCTG AATGGGGTCT TCTTGTTTCC TCCTTTTGGT 94429 .......... .......... .......... .......... .......... .......... 250 TCACACCCTT TTCAAAAGAT CTAATTTTTT ATGGTGTGGT TGCTCTAAAA AGCTGTTCTT 94369 .......... .......... .......... .......... .......... .......... 250 GATTGTGTTT TCATGGTAGC ATTGAGGTAA TCTGAATGGG GTATTCTTGT TTCCTCCTTT 94309 .......... .......... .......... .......... .......... .......... 250 TGGTTCACAC CCTTTTCAAA AGATTTAATT TTTCATGGTG TAGTTGCACT GAAAAGCTCA 94249 .......... .......... .......... .......... .......... .......... 250 ACTGTATTTT CATGGTGGTA TTGAGGTAAC CTTTCTTCTG GTGTACTGTT CGAACTCGGT 94189 .......... .......... .......... .......... .......... .......... 250 AGATAATTGG CACACCCCTT GACCCTTCTC CACTTAAATA CGAGGCTTTT TGTTATGTCC 94129 .......... .......... .......... .......... .......... .......... 250 GCCTTACTCA CAAATCAGGC ATAGGCATTG CACTCTTACC ACTGAACCAA AGCATCTAGG 94069 .......... .......... .......... .......... .......... .......... 250 AGCATTTCCA ATCTGAAGTC TAGAGGAAAG TTGTTCGCTC AGATCTTGTC TAACACTATT 94009 .......... .......... .......... .......... .......... .......... 250 TTTTTCGTGC TTTTGGTGTT AATCATAGTT TATTGGTAGT TTCTTCTGAT TTTTCAGTTA 93949 .......... .......... .......... .......... .......... .......... 250 AGAAAGTTTT TTTTCTGTAT CAAGATTGCT CTAGATAGTT CAGAAAGATC TATAATGCTA 93889 .......... .......... .......... .......... .......... .......... 250 TAGTGTAGGT TCTTAGTATC ATCTGGGGAA TTGGAACTTA GCTTATTCAG CCACTCTCAT 93829 .......... .......... .......... .......... .......... .......... 250 ATCGACATTG AGGCGTAGTT ATTGTTGTTG TTGACCTAAC TGGAGCAGTG TTAGAAAGAA 93769 .......... .......... .......... .......... .......... .......... 250 TTGAAGTCCA GTGTTTACCA ATAGGCTCTT TAGA 93735 |||| | |||| .......... .......... ....GCTC-T TAGA 259 hqPGS_C10SLe0045H11.1-_SGN-E237992+ (96405 96157) ******************************************************************************** EST sequence 42 -strand 430 n (File: SGN-E240526-) 1 GCTATTTTAA GTATTGTCAA ACAGTTAAAT AAGTTAAAAA CCAGCTTTTA AGTCAGTTTG 61 ACCAGCTTTT AAGCTGAGCC AAACAAGCTC TTAATTCTGT TTTTGTAGCC AACTAGAAGT 121 TTTTTACCTC TTGGTCCCAT TGCTATCATC CTGCATGTGT TTCTCCAGAA CTGGGCCAAC 181 TCCTAACAAT TTAGTCTGAT ATTGCATTAT TTTGTGGGCT GTCATCATGG GTCAATGGCC 241 TTGTCCACAA TTACACACTC TGACTATACT GATGGTGGTC AATCTCACTG ATCATTTGCT 301 TCACCACGCC CAAGACGGAG GATAAAATAC CAGTTCAATA GTTTTACAAG TTCAGTATAG 361 TACAATGAAT TAAGATTTAC TCGATACAAA GTAACGAAAT AATCCTACTA ATCAAACAAA 421 GTTGACTTGT Predicted gene structure (within gDNA segment 97005 to 92108): Exon 1 96242 96157 ( 86 n); cDNA 1 86 ( 86 n); score: 0.942 Intron 1 96156 93745 (2412 n); Pd: 0.682 (s: 0.96), Pa: 0.815 (s: 0) Exon 2 93744 93732 ( 13 n); cDNA 87 99 ( 13 n); score: 0.692 MATCH C10SLe0045H11.1- SGN-E240526- 0.942 99 0.230 C PGS_C10SLe0045H11.1-_SGN-E240526- (96242 96157,93744 93732) Alignment (genomic DNA sequence = upper lines): GCTATTTTGA GTATTGCCAA ACAGTTAAAT AAGTCAAAAA CCAGCTTTTA AGTCAGTTTA 96183 |||||||| | |||||| ||| |||||||||| |||| ||||| |||||||||| ||||||||| GCTATTTTAA GTATTGTCAA ACAGTTAAAT AAGTTAAAAA CCAGCTTTTA AGTCAGTTTG 60 ACCAGCTTTT AAGCTGAGCC AAACAGGCTC TAACTAATTA AAAACAATAG GCATATATTA 96123 |||||||||| |||||||||| ||||| ACCAGCTTTT AAGCTGAGCC AAACAA.... .......... .......... .......... 86 TGTATCAAAA AACTATTTTA TACGATGAGA CTAATTTTAT CATGTCTAAT TATGCAGCAG 96063 .......... .......... .......... .......... .......... .......... 86 ATTAATTTAT TTAATTAAAA CAACATCCAT AAAGATTTTT CTTGTTAAAA TGAGCGAAAT 96003 .......... .......... .......... .......... .......... .......... 86 GCAATTAATA TATTCGAGTT TGAGTTTTGA AAATGAAAAC GCATGAGATA ACTCTCGAGC 95943 .......... .......... .......... .......... .......... .......... 86 CATGTGAATT CAAATATGGT CTATGATGAG ATACTTTTTC CGTCCATTTT TAATTGTCAT 95883 .......... .......... .......... .......... .......... .......... 86 AATATTTTTT TTAGAGCCAA ATTATAAGAA CTTTAACTAA CATTTTACAA AGTAATTTTT 95823 .......... .......... .......... .......... .......... .......... 86 TAATCGATAT GCAAAAAATT ACAATTTATG TACCTTTGTA TAGTTTTTGA ACATATATTT 95763 .......... .......... .......... .......... .......... .......... 86 TTTTTGCTTT AAATCAAATT AATGTAATCT AATTTAACTT TGAAAATTAA TCAAATTGAT 95703 .......... .......... .......... .......... .......... .......... 86 TTTCGAAAAA CGCAACATGA CAAATAAAAG TAGCCGAATA TTGTAGTTAA ATTTAATTTT 95643 .......... .......... .......... .......... .......... .......... 86 GAAAATTAAT CTAATTGATT TTCGAAAAAT GCAGCATGAC AAATAAAAGT AGACGAATAT 95583 .......... .......... .......... .......... .......... .......... 86 TGTAGTTAAA TTTAATTTTA AAAAATTAAT CTAATTGATT TTCAAAAAGC GCAATATGAC 95523 .......... .......... .......... .......... .......... .......... 86 AAATAAAAAT AGACGAATAT TGTAGTTAAA TTTAATTTTA AAAATTAATC CAATTGATTT 95463 .......... .......... .......... .......... .......... .......... 86 TCAAAAAACG CAACATGACA AATAAAAATA AATAACATAT CATAGTTAAA AATATGAATC 95403 .......... .......... .......... .......... .......... .......... 86 TATTTACATA AATAAAAAAA AAATCTTATT AAAAACATAC TTTCCATAAA TGAGCCCTCC 95343 .......... .......... .......... .......... .......... .......... 86 AATACGCGTA TCTAGACGGC CTCCAACAAG CCAAACAAAG CAGAAAAAAA CAATTTTATA 95283 .......... .......... .......... .......... .......... .......... 86 TATATATAGA GCCGCGTATT CTGAGGTCCC AGCAAGGCCT AATTATACAA AGAGGCTACT 95223 .......... .......... .......... .......... .......... .......... 86 GCATTTTGGT TAATTTTCAT GCAAAGACTA ATTATACTAA GTTTAATGAT CATTTGGAAG 95163 .......... .......... .......... .......... .......... .......... 86 AACTTTAATG GCAAATTCAA CTTAATTAAA CTGGAAAGGC TGCTTGAAAA CAGCTGTTTC 95103 .......... .......... .......... .......... .......... .......... 86 AAATTGGGTA TGGAAGTGGG GTTTAGAAAT TCATTCTTGT GGTCCCTTTT TTGCTATCCA 95043 .......... .......... .......... .......... .......... .......... 86 CAGCCTGTTA AGAGCTTGCT GTTGGAGTAA CCACTGAAAA AGCTCTTGTT CATTGTGTTT 94983 .......... .......... .......... .......... .......... .......... 86 TGAATTGGGT ATTTCTTGTT TCTTTCTTCA TTTTGGTTTA CACCCATGTC AAAAGATTCA 94923 .......... .......... .......... .......... .......... .......... 86 ATTTTTAATA ATGGAATTGC ACTAAAAAGC TCTTCTTGAT TGTGTTTGAA TTTGGGTCTT 94863 .......... .......... .......... .......... .......... .......... 86 TCTTGTTTCT TCCTTTTGGT TTACACCCAT GTTAAAAGAT TCAATTTTTC AAGGGGAAGT 94803 .......... .......... .......... .......... .......... .......... 86 TCTACTTGAT AGCTCTTCTT GACTCTGGTT TTTATGGTGG ATTTGCACTA AATAACTCTT 94743 .......... .......... .......... .......... .......... .......... 86 CTTGATTGTG TTTATGTGGT GGCATTTAGG TGACTTGACT TAGCTCTTGT TGTTTCTTCC 94683 .......... .......... .......... .......... .......... .......... 86 TTCTGGTTCA CACCCTTTTC AAAAGATTCA ATTTTCATGT TGGAGTTGCA CTAAAAAGCT 94623 .......... .......... .......... .......... .......... .......... 86 GTTCTTGATT GTGTTTTCAT GGTGGCATTG AGGTAATCTG AATCAAGTCT TCTTGTTTCT 94563 .......... .......... .......... .......... .......... .......... 86 TCCTTATGGT TCACACCCTT TTCAAAAGAT TCAATTTTTC ATGGTGGAGT TGCACTAAAA 94503 .......... .......... .......... .......... .......... .......... 86 AGCTGTTCTT GATTGTGTTT TCATGGTGGC ATTGAGGTAA TCTGAATGGG GTCTTCTTGT 94443 .......... .......... .......... .......... .......... .......... 86 TTCCTCCTTT TGGTTCACAC CCTTTTCAAA AGATCTAATT TTTTATGGTG TGGTTGCTCT 94383 .......... .......... .......... .......... .......... .......... 86 AAAAAGCTGT TCTTGATTGT GTTTTCATGG TAGCATTGAG GTAATCTGAA TGGGGTATTC 94323 .......... .......... .......... .......... .......... .......... 86 TTGTTTCCTC CTTTTGGTTC ACACCCTTTT CAAAAGATTT AATTTTTCAT GGTGTAGTTG 94263 .......... .......... .......... .......... .......... .......... 86 CACTGAAAAG CTCAACTGTA TTTTCATGGT GGTATTGAGG TAACCTTTCT TCTGGTGTAC 94203 .......... .......... .......... .......... .......... .......... 86 TGTTCGAACT CGGTAGATAA TTGGCACACC CCTTGACCCT TCTCCACTTA AATACGAGGC 94143 .......... .......... .......... .......... .......... .......... 86 TTTTTGTTAT GTCCGCCTTA CTCACAAATC AGGCATAGGC ATTGCACTCT TACCACTGAA 94083 .......... .......... .......... .......... .......... .......... 86 CCAAAGCATC TAGGAGCATT TCCAATCTGA AGTCTAGAGG AAAGTTGTTC GCTCAGATCT 94023 .......... .......... .......... .......... .......... .......... 86 TGTCTAACAC TATTTTTTTC GTGCTTTTGG TGTTAATCAT AGTTTATTGG TAGTTTCTTC 93963 .......... .......... .......... .......... .......... .......... 86 TGATTTTTCA GTTAAGAAAG TTTTTTTTCT GTATCAAGAT TGCTCTAGAT AGTTCAGAAA 93903 .......... .......... .......... .......... .......... .......... 86 GATCTATAAT GCTATAGTGT AGGTTCTTAG TATCATCTGG GGAATTGGAA CTTAGCTTAT 93843 .......... .......... .......... .......... .......... .......... 86 TCAGCCACTC TCATATCGAC ATTGAGGCGT AGTTATTGTT GTTGTTGACC TAACTGGAGC 93783 .......... .......... .......... .......... .......... .......... 86 AGTGTTAGAA AGAATTGAAG TCCAGTGTTT ACCAATAGGC TCTTTAGAAT G 93732 || |||| | | | .......... .......... .......... ........GC TCTTAATTCT G 99 hqPGS_C10SLe0045H11.1-_SGN-E240526- (96242 96157) ******************************************************************************** EST sequence 107 +strand 514 n (File: SGN-E256217+) 1 AAAAACCAGC TTTTAAGTCA GTTTGACCAG CTTTTAAGCT GAGCCAAACA GGCTCTTAAA 61 ATGTCTGCTT AGATGTGCTA TATATATTTG AGCTTTTTTT GAAGTAGTAT ATTATCCTTA 121 AGTTCAACAT AAAAATACAT GCTTTAACAT AGCACATATA GTTAATCAAA AGACGAAATG 181 ATGAATAATT TTGCGAATTT GATTATTCAC AAGAAAAGGG ATAGTTCAAA GTGTACATTT 241 CAAGTAATTG AAGATATCAT AAAGACTAAA ATTAGAAGAA CTAATAATTG AGGGATCAAA 301 AATGTTATTA CCTTATTAAA ATACTATTCC ATTTTCATAT TAAATTAACT AATTAAGAGT 361 GTTTTATAAT CTAATAAAAC ATGCAATAAT TATTGACGAA ATGTGGTTTT GGTACCTATA 421 ATCTTTCTGA ATATTTGCTC TTATTTTTTC TCTTTTTATT TTTCCATGGA TTAGTATTGG 481 AAGCTTAGGA TCTGGAAATT CAGAAGCTTA TGTG Predicted gene structure (within gDNA segment 96807 to 90962): Exon 1 96207 96157 ( 51 n); cDNA 1 51 ( 51 n); score: 0.980 Intron 1 96156 93745 (2412 n); Pd: 0.682 (s: 0.98), Pa: 0.815 (s: 0) Exon 2 93744 93715 ( 30 n); cDNA 52 81 ( 30 n); score: 0.550 MATCH C10SLe0045H11.1- SGN-E256217+ 0.980 81 0.158 C PGS_C10SLe0045H11.1-_SGN-E256217+ (96207 96157,93744 93715) Alignment (genomic DNA sequence = upper lines): AAAAACCAGC TTTTAAGTCA GTTTAACCAG CTTTTAAGCT GAGCCAAACA GGCTCTAACT 96148 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| | AAAAACCAGC TTTTAAGTCA GTTTGACCAG CTTTTAAGCT GAGCCAAACA G......... 51 AATTAAAAAC AATAGGCATA TATTATGTAT CAAAAAACTA TTTTATACGA TGAGACTAAT 96088 .......... .......... .......... .......... .......... .......... 51 TTTATCATGT CTAATTATGC AGCAGATTAA TTTATTTAAT TAAAACAACA TCCATAAAGA 96028 .......... .......... .......... .......... .......... .......... 51 TTTTTCTTGT TAAAATGAGC GAAATGCAAT TAATATATTC GAGTTTGAGT TTTGAAAATG 95968 .......... .......... .......... .......... .......... .......... 51 AAAACGCATG AGATAACTCT CGAGCCATGT GAATTCAAAT ATGGTCTATG ATGAGATACT 95908 .......... .......... .......... .......... .......... .......... 51 TTTTCCGTCC ATTTTTAATT GTCATAATAT TTTTTTTAGA GCCAAATTAT AAGAACTTTA 95848 .......... .......... .......... .......... .......... .......... 51 ACTAACATTT TACAAAGTAA TTTTTTAATC GATATGCAAA AAATTACAAT TTATGTACCT 95788 .......... .......... .......... .......... .......... .......... 51 TTGTATAGTT TTTGAACATA TATTTTTTTT GCTTTAAATC AAATTAATGT AATCTAATTT 95728 .......... .......... .......... .......... .......... .......... 51 AACTTTGAAA ATTAATCAAA TTGATTTTCG AAAAACGCAA CATGACAAAT AAAAGTAGCC 95668 .......... .......... .......... .......... .......... .......... 51 GAATATTGTA GTTAAATTTA ATTTTGAAAA TTAATCTAAT TGATTTTCGA AAAATGCAGC 95608 .......... .......... .......... .......... .......... .......... 51 ATGACAAATA AAAGTAGACG AATATTGTAG TTAAATTTAA TTTTAAAAAA TTAATCTAAT 95548 .......... .......... .......... .......... .......... .......... 51 TGATTTTCAA AAAGCGCAAT ATGACAAATA AAAATAGACG AATATTGTAG TTAAATTTAA 95488 .......... .......... .......... .......... .......... .......... 51 TTTTAAAAAT TAATCCAATT GATTTTCAAA AAACGCAACA TGACAAATAA AAATAAATAA 95428 .......... .......... .......... .......... .......... .......... 51 CATATCATAG TTAAAAATAT GAATCTATTT ACATAAATAA AAAAAAAATC TTATTAAAAA 95368 .......... .......... .......... .......... .......... .......... 51 CATACTTTCC ATAAATGAGC CCTCCAATAC GCGTATCTAG ACGGCCTCCA ACAAGCCAAA 95308 .......... .......... .......... .......... .......... .......... 51 CAAAGCAGAA AAAAACAATT TTATATATAT ATAGAGCCGC GTATTCTGAG GTCCCAGCAA 95248 .......... .......... .......... .......... .......... .......... 51 GGCCTAATTA TACAAAGAGG CTACTGCATT TTGGTTAATT TTCATGCAAA GACTAATTAT 95188 .......... .......... .......... .......... .......... .......... 51 ACTAAGTTTA ATGATCATTT GGAAGAACTT TAATGGCAAA TTCAACTTAA TTAAACTGGA 95128 .......... .......... .......... .......... .......... .......... 51 AAGGCTGCTT GAAAACAGCT GTTTCAAATT GGGTATGGAA GTGGGGTTTA GAAATTCATT 95068 .......... .......... .......... .......... .......... .......... 51 CTTGTGGTCC CTTTTTTGCT ATCCACAGCC TGTTAAGAGC TTGCTGTTGG AGTAACCACT 95008 .......... .......... .......... .......... .......... .......... 51 GAAAAAGCTC TTGTTCATTG TGTTTTGAAT TGGGTATTTC TTGTTTCTTT CTTCATTTTG 94948 .......... .......... .......... .......... .......... .......... 51 GTTTACACCC ATGTCAAAAG ATTCAATTTT TAATAATGGA ATTGCACTAA AAAGCTCTTC 94888 .......... .......... .......... .......... .......... .......... 51 TTGATTGTGT TTGAATTTGG GTCTTTCTTG TTTCTTCCTT TTGGTTTACA CCCATGTTAA 94828 .......... .......... .......... .......... .......... .......... 51 AAGATTCAAT TTTTCAAGGG GAAGTTCTAC TTGATAGCTC TTCTTGACTC TGGTTTTTAT 94768 .......... .......... .......... .......... .......... .......... 51 GGTGGATTTG CACTAAATAA CTCTTCTTGA TTGTGTTTAT GTGGTGGCAT TTAGGTGACT 94708 .......... .......... .......... .......... .......... .......... 51 TGACTTAGCT CTTGTTGTTT CTTCCTTCTG GTTCACACCC TTTTCAAAAG ATTCAATTTT 94648 .......... .......... .......... .......... .......... .......... 51 CATGTTGGAG TTGCACTAAA AAGCTGTTCT TGATTGTGTT TTCATGGTGG CATTGAGGTA 94588 .......... .......... .......... .......... .......... .......... 51 ATCTGAATCA AGTCTTCTTG TTTCTTCCTT ATGGTTCACA CCCTTTTCAA AAGATTCAAT 94528 .......... .......... .......... .......... .......... .......... 51 TTTTCATGGT GGAGTTGCAC TAAAAAGCTG TTCTTGATTG TGTTTTCATG GTGGCATTGA 94468 .......... .......... .......... .......... .......... .......... 51 GGTAATCTGA ATGGGGTCTT CTTGTTTCCT CCTTTTGGTT CACACCCTTT TCAAAAGATC 94408 .......... .......... .......... .......... .......... .......... 51 TAATTTTTTA TGGTGTGGTT GCTCTAAAAA GCTGTTCTTG ATTGTGTTTT CATGGTAGCA 94348 .......... .......... .......... .......... .......... .......... 51 TTGAGGTAAT CTGAATGGGG TATTCTTGTT TCCTCCTTTT GGTTCACACC CTTTTCAAAA 94288 .......... .......... .......... .......... .......... .......... 51 GATTTAATTT TTCATGGTGT AGTTGCACTG AAAAGCTCAA CTGTATTTTC ATGGTGGTAT 94228 .......... .......... .......... .......... .......... .......... 51 TGAGGTAACC TTTCTTCTGG TGTACTGTTC GAACTCGGTA GATAATTGGC ACACCCCTTG 94168 .......... .......... .......... .......... .......... .......... 51 ACCCTTCTCC ACTTAAATAC GAGGCTTTTT GTTATGTCCG CCTTACTCAC AAATCAGGCA 94108 .......... .......... .......... .......... .......... .......... 51 TAGGCATTGC ACTCTTACCA CTGAACCAAA GCATCTAGGA GCATTTCCAA TCTGAAGTCT 94048 .......... .......... .......... .......... .......... .......... 51 AGAGGAAAGT TGTTCGCTCA GATCTTGTCT AACACTATTT TTTTCGTGCT TTTGGTGTTA 93988 .......... .......... .......... .......... .......... .......... 51 ATCATAGTTT ATTGGTAGTT TCTTCTGATT TTTCAGTTAA GAAAGTTTTT TTTCTGTATC 93928 .......... .......... .......... .......... .......... .......... 51 AAGATTGCTC TAGATAGTTC AGAAAGATCT ATAATGCTAT AGTGTAGGTT CTTAGTATCA 93868 .......... .......... .......... .......... .......... .......... 51 TCTGGGGAAT TGGAACTTAG CTTATTCAGC CACTCTCATA TCGACATTGA GGCGTAGTTA 93808 .......... .......... .......... .......... .......... .......... 51 TTGTTGTTGT TGACCTAACT GGAGCAGTGT TAGAAAGAAT TGAAGTCCAG TGTTTACCAA 93748 .......... .......... .......... .......... .......... .......... 51 TAGGCTCTTT AGAATGGTAG ACTTGA-GAA CAAT 93715 |||| || | |||| | | || | | || ...GCTC-TT AAAATGTCTG CTTAGATGTG CTAT 81 hqPGS_C10SLe0045H11.1-_SGN-E256217+ (96207 96157) ******************************************************************************** EST sequence 121 +strand 310 n (File: SGN-E233594+) 1 GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 61 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAGCACCCCT ACCCCAGCTT 121 TTAACTTTTG GCTTAAAATA AGTTTTTTTT TTTAACTTAA AATAAGTTAT TTTGAGTATT 181 GCCAAACAAC TAAATAAGTC AAAAATCAGT TTTTAAGTCA GTTTGATCAG CTTTTAAGCT 241 GAACTAAACA AGCTCTTAGA CAATAATTTT TTCTTTTACG TATCTCCACT TAAATAGTAG 301 ACATTATAAG Predicted gene structure (within gDNA segment 97177 to 94390): Exon 1 96406 96158 ( 249 n); cDNA 1 250 ( 250 n); score: 0.906 MATCH C10SLe0045H11.1- SGN-E233594+ 0.906 249 0.803 C PGS_C10SLe0045H11.1-_SGN-E233594+ (96406 96158) Alignment (genomic DNA sequence = upper lines): GATGTTAGGG TTATATGGGT AATTTGGAGA TTGTATAAAA ATATTAAGGG AAAAAACATA 96347 |||||||| | |||| ||| | |||||||||| |||||||||| |||||||||| ||||| ||| GATGTTAGAG TTATGTGGAT AATTTGGAGA TTGTATAAAA ATATTAAGGG CAAAAAGATA 60 AAAATGTGGT CAACTTAAAA CAGCTTATAA GCTAAAAAAA AAAAGCACCC CTACCCCAGC 96287 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| AAAATGTGGT CAACTTAAAA CAGCTTATAA GCT--AAAAA AAAAGCACCC CTACCCCAGC 118 TTTTAACTTT TGGCTTAAAA TAAG---TTT TTTTTAACTT AAAATAAGCT ATTTTGAGTA 96230 |||||||||| |||||||||| |||| ||| |||||||||| |||||||| | |||||||||| TTTTAACTTT TGGCTTAAAA TAAGTTTTTT TTTTTAACTT AAAATAAGTT ATTTTGAGTA 178 TTGCCAAACA GTTAAATAAG TCAAAAACCA GCTTTTAAGT CAGTTTAACC AGCTTTTAAG 96170 |||||||||| |||||||| ||||||| || | |||||||| |||||| | | |||||||||| TTGCCAAACA ACTAAATAAG TCAAAAATCA GTTTTTAAGT CAGTTTGATC AGCTTTTAAG 238 CTGAGCCAAA CA 96158 |||| | ||| || CTGAACTAAA CA 250 hqPGS_C10SLe0045H11.1-_SGN-E233594+ (96406 96158) ******************************************************************************** EST sequence 124 +strand 765 n (File: SGN-E377316+) 1 TTTTTTTTTT TAAGTTAAAA AAAACTATTT TGAGTATTGC CAAACAGTTA AATAAGTCAA 61 AAACCAGCTT TTAAGCTGAG CCAAACAGGC TCTAAGTATC TCTGCTTAAA ATAACTGTGA 121 CATCTTTGCT TTTCTGGGAG TTTGAAACCC AAAATCAGGT ATCCTCAGTC CTTTATCTGC 181 CAATTGATGC TAGTCAAGAA GACTTCATGA ATTTTCAGCA TCCATCCGTT CAATCACACG 241 ACGTGCTTCT TCCTCTGTAC CAGGGACGAC ATTCCTAACT CGTGCACCAT TTTTCAGTGA 301 ATCTTGTTGG ACAGTGAAAG TGAAATAGAA ATTGTTTGAA ACCTCGCTAG ACCGCAACTC 361 AGGTCTCATG ACATGAGCTA CCACTTCTAC ATTGATCAGA GGCTTAGATA AATTCTCTAG 421 TTCTGTGTAC AAAACACATG ATTTGAGGCG GAGGAAATTT CCAACATCAA CAGGTTTCAA 481 GAAATCAACA TGATCAACTT CCACAAAGCA AGGTGCACTG CCTGCAAATG CATAAGCTGT 541 TGCATAAGCC AGCTCAAAAG CTCTCCGCAT TAAGAATCCT CCAAAGATTC GACCATGGAT 601 ATTTCGCTGC TGTGGCTGGC AAATCAAAGA GTTCTGAAGA CATGTATCTT TTATTAAAAT 661 GCTGTCTCTA TCTGCTAAAG CAGGCATATC GCAAAAGATT CGGCTCTCAG CCAACAATTC 721 GTTTAGCCTA TTCACTTCCT CACCCTGAAT TTCCTTCTTT CGTTC Predicted gene structure (within gDNA segment 97081 to 88840): Exon 1 96262 96192 ( 71 n); cDNA 4 74 ( 71 n); score: 0.958 Intron 1 96191 94111 (2081 n); Pd: 0.000 (s: 1.00), Pa: 0.556 (s: 0) Exon 2 94110 94105 ( 6 n); cDNA 75 80 ( 6 n); score: 0.667 MATCH C10SLe0045H11.1- SGN-E377316+ 0.958 77 0.101 C PGS_C10SLe0045H11.1-_SGN-E377316+ (96262 96192,94110 94105) Alignment (genomic DNA sequence = upper lines): TTTTTTTTAA CTTAAAATAA GCTATTTTGA GTATTGCCAA ACAGTTAAAT AAGTCAAAAA 96203 |||||||||| |||||| || ||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTAA GTTAAAAAAA ACTATTTTGA GTATTGCCAA ACAGTTAAAT AAGTCAAAAA 63 CCAGCTTTTA AGTCAGTTTA ACCAGCTTTT AAGCTGAGCC AAACAGGCTC TAACTAATTA 96143 |||||||||| | CCAGCTTTTA A......... .......... .......... .......... .......... 74 AAAACAATAG GCATATATTA TGTATCAAAA AACTATTTTA TACGATGAGA CTAATTTTAT 96083 .......... .......... .......... .......... .......... .......... 74 CATGTCTAAT TATGCAGCAG ATTAATTTAT TTAATTAAAA CAACATCCAT AAAGATTTTT 96023 .......... .......... .......... .......... .......... .......... 74 CTTGTTAAAA TGAGCGAAAT GCAATTAATA TATTCGAGTT TGAGTTTTGA AAATGAAAAC 95963 .......... .......... .......... .......... .......... .......... 74 GCATGAGATA ACTCTCGAGC CATGTGAATT CAAATATGGT CTATGATGAG ATACTTTTTC 95903 .......... .......... .......... .......... .......... .......... 74 CGTCCATTTT TAATTGTCAT AATATTTTTT TTAGAGCCAA ATTATAAGAA CTTTAACTAA 95843 .......... .......... .......... .......... .......... .......... 74 CATTTTACAA AGTAATTTTT TAATCGATAT GCAAAAAATT ACAATTTATG TACCTTTGTA 95783 .......... .......... .......... .......... .......... .......... 74 TAGTTTTTGA ACATATATTT TTTTTGCTTT AAATCAAATT AATGTAATCT AATTTAACTT 95723 .......... .......... .......... .......... .......... .......... 74 TGAAAATTAA TCAAATTGAT TTTCGAAAAA CGCAACATGA CAAATAAAAG TAGCCGAATA 95663 .......... .......... .......... .......... .......... .......... 74 TTGTAGTTAA ATTTAATTTT GAAAATTAAT CTAATTGATT TTCGAAAAAT GCAGCATGAC 95603 .......... .......... .......... .......... .......... .......... 74 AAATAAAAGT AGACGAATAT TGTAGTTAAA TTTAATTTTA AAAAATTAAT CTAATTGATT 95543 .......... .......... .......... .......... .......... .......... 74 TTCAAAAAGC GCAATATGAC AAATAAAAAT AGACGAATAT TGTAGTTAAA TTTAATTTTA 95483 .......... .......... .......... .......... .......... .......... 74 AAAATTAATC CAATTGATTT TCAAAAAACG CAACATGACA AATAAAAATA AATAACATAT 95423 .......... .......... .......... .......... .......... .......... 74 CATAGTTAAA AATATGAATC TATTTACATA AATAAAAAAA AAATCTTATT AAAAACATAC 95363 .......... .......... .......... .......... .......... .......... 74 TTTCCATAAA TGAGCCCTCC AATACGCGTA TCTAGACGGC CTCCAACAAG CCAAACAAAG 95303 .......... .......... .......... .......... .......... .......... 74 CAGAAAAAAA CAATTTTATA TATATATAGA GCCGCGTATT CTGAGGTCCC AGCAAGGCCT 95243 .......... .......... .......... .......... .......... .......... 74 AATTATACAA AGAGGCTACT GCATTTTGGT TAATTTTCAT GCAAAGACTA ATTATACTAA 95183 .......... .......... .......... .......... .......... .......... 74 GTTTAATGAT CATTTGGAAG AACTTTAATG GCAAATTCAA CTTAATTAAA CTGGAAAGGC 95123 .......... .......... .......... .......... .......... .......... 74 TGCTTGAAAA CAGCTGTTTC AAATTGGGTA TGGAAGTGGG GTTTAGAAAT TCATTCTTGT 95063 .......... .......... .......... .......... .......... .......... 74 GGTCCCTTTT TTGCTATCCA CAGCCTGTTA AGAGCTTGCT GTTGGAGTAA CCACTGAAAA 95003 .......... .......... .......... .......... .......... .......... 74 AGCTCTTGTT CATTGTGTTT TGAATTGGGT ATTTCTTGTT TCTTTCTTCA TTTTGGTTTA 94943 .......... .......... .......... .......... .......... .......... 74 CACCCATGTC AAAAGATTCA ATTTTTAATA ATGGAATTGC ACTAAAAAGC TCTTCTTGAT 94883 .......... .......... .......... .......... .......... .......... 74 TGTGTTTGAA TTTGGGTCTT TCTTGTTTCT TCCTTTTGGT TTACACCCAT GTTAAAAGAT 94823 .......... .......... .......... .......... .......... .......... 74 TCAATTTTTC AAGGGGAAGT TCTACTTGAT AGCTCTTCTT GACTCTGGTT TTTATGGTGG 94763 .......... .......... .......... .......... .......... .......... 74 ATTTGCACTA AATAACTCTT CTTGATTGTG TTTATGTGGT GGCATTTAGG TGACTTGACT 94703 .......... .......... .......... .......... .......... .......... 74 TAGCTCTTGT TGTTTCTTCC TTCTGGTTCA CACCCTTTTC AAAAGATTCA ATTTTCATGT 94643 .......... .......... .......... .......... .......... .......... 74 TGGAGTTGCA CTAAAAAGCT GTTCTTGATT GTGTTTTCAT GGTGGCATTG AGGTAATCTG 94583 .......... .......... .......... .......... .......... .......... 74 AATCAAGTCT TCTTGTTTCT TCCTTATGGT TCACACCCTT TTCAAAAGAT TCAATTTTTC 94523 .......... .......... .......... .......... .......... .......... 74 ATGGTGGAGT TGCACTAAAA AGCTGTTCTT GATTGTGTTT TCATGGTGGC ATTGAGGTAA 94463 .......... .......... .......... .......... .......... .......... 74 TCTGAATGGG GTCTTCTTGT TTCCTCCTTT TGGTTCACAC CCTTTTCAAA AGATCTAATT 94403 .......... .......... .......... .......... .......... .......... 74 TTTTATGGTG TGGTTGCTCT AAAAAGCTGT TCTTGATTGT GTTTTCATGG TAGCATTGAG 94343 .......... .......... .......... .......... .......... .......... 74 GTAATCTGAA TGGGGTATTC TTGTTTCCTC CTTTTGGTTC ACACCCTTTT CAAAAGATTT 94283 .......... .......... .......... .......... .......... .......... 74 AATTTTTCAT GGTGTAGTTG CACTGAAAAG CTCAACTGTA TTTTCATGGT GGTATTGAGG 94223 .......... .......... .......... .......... .......... .......... 74 TAACCTTTCT TCTGGTGTAC TGTTCGAACT CGGTAGATAA TTGGCACACC CCTTGACCCT 94163 .......... .......... .......... .......... .......... .......... 74 TCTCCACTTA AATACGAGGC TTTTTGTTAT GTCCGCCTTA CTCACAAATC AGGCATAG 94105 || || .......... .......... .......... .......... .......... ..GCTGAG 80 hqPGS_C10SLe0045H11.1-_SGN-E377316+ (96262 96192) ******************************************************************************** EST sequence 85 +strand 385 n (File: SGN-E217478+) 1 TTTTTTTTTT TTTTTGTTGG GGCTTAAAAT AAGTTTTTTT TAACTTAAAA TAAACCATTT 61 TGAGTATTGT CAAACAGTTA AATAAGTTAA AAAAAACTAT TTTGAGTATT GCCAAACAGT 121 TAAATAAGTC AAAAACCAGC TTTTAAGCTG AGCCAAACAG GCTCTAAGTA TCTCTGCTTA 181 AAATAACTGT GACATCTTTG CTTTTCTGGG AGTTTGAAAC CCAAAATCAG GTATCCTCAG 241 TCCTTTATCT GCCAATTGAT GCTAGTCAAG AAGACTTCAT GAATTTTCAG CATCCATCCG 301 TTCAATCACA CGACGTGCTT CTTCCTCTGT ACCAGGGACG ACATTCCTAA CTCGTGCACC 361 ATTTTTCAGT GAATCTTGTT GGACA Predicted gene structure (within gDNA segment 98401 to 93201): Exon 1 96255 96192 ( 64 n); cDNA 83 146 ( 64 n); score: 0.953 Intron 1 96191 94111 (2081 n); Pd: 0.000 (s: 1.00), Pa: 0.556 (s: 0) Exon 2 94110 94105 ( 6 n); cDNA 147 152 ( 6 n); score: 0.667 PPA cDNA 18 1 MATCH C10SLe0045H11.1- SGN-E217478+ 0.953 70 0.182 C PGS_C10SLe0045H11.1-_SGN-E217478+ (96255 96192,94110 94105) Alignment (genomic DNA sequence = upper lines): TAACTTAAAA TAAGCTATTT TGAGTATTGC CAAACAGTTA AATAAGTCAA AAACCAGCTT 96196 ||| |||||| || |||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGTTAAAA AAAACTATTT TGAGTATTGC CAAACAGTTA AATAAGTCAA AAACCAGCTT 142 TTAAGTCAGT TTAACCAGCT TTTAAGCTGA GCCAAACAGG CTCTAACTAA TTAAAAACAA 96136 |||| TTAA...... .......... .......... .......... .......... .......... 146 TAGGCATATA TTATGTATCA AAAAACTATT TTATACGATG AGACTAATTT TATCATGTCT 96076 .......... .......... .......... .......... .......... .......... 146 AATTATGCAG CAGATTAATT TATTTAATTA AAACAACATC CATAAAGATT TTTCTTGTTA 96016 .......... .......... .......... .......... .......... .......... 146 AAATGAGCGA AATGCAATTA ATATATTCGA GTTTGAGTTT TGAAAATGAA AACGCATGAG 95956 .......... .......... .......... .......... .......... .......... 146 ATAACTCTCG AGCCATGTGA ATTCAAATAT GGTCTATGAT GAGATACTTT TTCCGTCCAT 95896 .......... .......... .......... .......... .......... .......... 146 TTTTAATTGT CATAATATTT TTTTTAGAGC CAAATTATAA GAACTTTAAC TAACATTTTA 95836 .......... .......... .......... .......... .......... .......... 146 CAAAGTAATT TTTTAATCGA TATGCAAAAA ATTACAATTT ATGTACCTTT GTATAGTTTT 95776 .......... .......... .......... .......... .......... .......... 146 TGAACATATA TTTTTTTTGC TTTAAATCAA ATTAATGTAA TCTAATTTAA CTTTGAAAAT 95716 .......... .......... .......... .......... .......... .......... 146 TAATCAAATT GATTTTCGAA AAACGCAACA TGACAAATAA AAGTAGCCGA ATATTGTAGT 95656 .......... .......... .......... .......... .......... .......... 146 TAAATTTAAT TTTGAAAATT AATCTAATTG ATTTTCGAAA AATGCAGCAT GACAAATAAA 95596 .......... .......... .......... .......... .......... .......... 146 AGTAGACGAA TATTGTAGTT AAATTTAATT TTAAAAAATT AATCTAATTG ATTTTCAAAA 95536 .......... .......... .......... .......... .......... .......... 146 AGCGCAATAT GACAAATAAA AATAGACGAA TATTGTAGTT AAATTTAATT TTAAAAATTA 95476 .......... .......... .......... .......... .......... .......... 146 ATCCAATTGA TTTTCAAAAA ACGCAACATG ACAAATAAAA ATAAATAACA TATCATAGTT 95416 .......... .......... .......... .......... .......... .......... 146 AAAAATATGA ATCTATTTAC ATAAATAAAA AAAAAATCTT ATTAAAAACA TACTTTCCAT 95356 .......... .......... .......... .......... .......... .......... 146 AAATGAGCCC TCCAATACGC GTATCTAGAC GGCCTCCAAC AAGCCAAACA AAGCAGAAAA 95296 .......... .......... .......... .......... .......... .......... 146 AAACAATTTT ATATATATAT AGAGCCGCGT ATTCTGAGGT CCCAGCAAGG CCTAATTATA 95236 .......... .......... .......... .......... .......... .......... 146 CAAAGAGGCT ACTGCATTTT GGTTAATTTT CATGCAAAGA CTAATTATAC TAAGTTTAAT 95176 .......... .......... .......... .......... .......... .......... 146 GATCATTTGG AAGAACTTTA ATGGCAAATT CAACTTAATT AAACTGGAAA GGCTGCTTGA 95116 .......... .......... .......... .......... .......... .......... 146 AAACAGCTGT TTCAAATTGG GTATGGAAGT GGGGTTTAGA AATTCATTCT TGTGGTCCCT 95056 .......... .......... .......... .......... .......... .......... 146 TTTTTGCTAT CCACAGCCTG TTAAGAGCTT GCTGTTGGAG TAACCACTGA AAAAGCTCTT 94996 .......... .......... .......... .......... .......... .......... 146 GTTCATTGTG TTTTGAATTG GGTATTTCTT GTTTCTTTCT TCATTTTGGT TTACACCCAT 94936 .......... .......... .......... .......... .......... .......... 146 GTCAAAAGAT TCAATTTTTA ATAATGGAAT TGCACTAAAA AGCTCTTCTT GATTGTGTTT 94876 .......... .......... .......... .......... .......... .......... 146 GAATTTGGGT CTTTCTTGTT TCTTCCTTTT GGTTTACACC CATGTTAAAA GATTCAATTT 94816 .......... .......... .......... .......... .......... .......... 146 TTCAAGGGGA AGTTCTACTT GATAGCTCTT CTTGACTCTG GTTTTTATGG TGGATTTGCA 94756 .......... .......... .......... .......... .......... .......... 146 CTAAATAACT CTTCTTGATT GTGTTTATGT GGTGGCATTT AGGTGACTTG ACTTAGCTCT 94696 .......... .......... .......... .......... .......... .......... 146 TGTTGTTTCT TCCTTCTGGT TCACACCCTT TTCAAAAGAT TCAATTTTCA TGTTGGAGTT 94636 .......... .......... .......... .......... .......... .......... 146 GCACTAAAAA GCTGTTCTTG ATTGTGTTTT CATGGTGGCA TTGAGGTAAT CTGAATCAAG 94576 .......... .......... .......... .......... .......... .......... 146 TCTTCTTGTT TCTTCCTTAT GGTTCACACC CTTTTCAAAA GATTCAATTT TTCATGGTGG 94516 .......... .......... .......... .......... .......... .......... 146 AGTTGCACTA AAAAGCTGTT CTTGATTGTG TTTTCATGGT GGCATTGAGG TAATCTGAAT 94456 .......... .......... .......... .......... .......... .......... 146 GGGGTCTTCT TGTTTCCTCC TTTTGGTTCA CACCCTTTTC AAAAGATCTA ATTTTTTATG 94396 .......... .......... .......... .......... .......... .......... 146 GTGTGGTTGC TCTAAAAAGC TGTTCTTGAT TGTGTTTTCA TGGTAGCATT GAGGTAATCT 94336 .......... .......... .......... .......... .......... .......... 146 GAATGGGGTA TTCTTGTTTC CTCCTTTTGG TTCACACCCT TTTCAAAAGA TTTAATTTTT 94276 .......... .......... .......... .......... .......... .......... 146 CATGGTGTAG TTGCACTGAA AAGCTCAACT GTATTTTCAT GGTGGTATTG AGGTAACCTT 94216 .......... .......... .......... .......... .......... .......... 146 TCTTCTGGTG TACTGTTCGA ACTCGGTAGA TAATTGGCAC ACCCCTTGAC CCTTCTCCAC 94156 .......... .......... .......... .......... .......... .......... 146 TTAAATACGA GGCTTTTTGT TATGTCCGCC TTACTCACAA ATCAGGCATA G 94105 || | | .......... .......... .......... .......... .....GCTGA G 152 hqPGS_C10SLe0045H11.1-_SGN-E217478+ (96255 96192) ******************************************************************************** EST sequence 108 +strand 468 n (File: SGN-E228654+) 1 TTTTTTTTTT TTTTTTTTTG GGCTTAAAAT AAGTTTTTTT TAACTTAAAA TAAACCATTT 61 TGAGTATTGT CAAACAGTTA AATAAGTTAA AAAAAACTAT TTTGAGTATT GCCAAACAGT 121 TAAATAAGTC AAAAACCAGC TTTTAAGCTG AGCCAAACAG GCTCTAAGTA TCTCTGCTTA 181 AAATAACTGG GACATCTTTG CTTTTCTGGG AGTTTGAAAC CCAAAATCAG GTATCCTCAG 241 TCCTTTATCT GCCAATTGAT GCTAGTCAAG AAGACTTCAT GAATTTTCAG CATCCATCCG 301 TTCAATCACA CGACGTGCTT CTTCCTCTGT ACCAGGGACG ACATTCCTAA CTCGTGCACC 361 ATTTTTCAGT GAATCTTGTT GGACAGTGAA AGTGAAATAG AAATTGTTTG AAACCTCGCT 421 AGACCGCAAC TCAGGTCTCA TGACATGAGC TACCACTTCT ACATTGAT Predicted gene structure (within gDNA segment 98401 to 92371): Exon 1 96255 96192 ( 64 n); cDNA 83 146 ( 64 n); score: 0.953 Intron 1 96191 94111 (2081 n); Pd: 0.000 (s: 1.00), Pa: 0.556 (s: 0) Exon 2 94110 94105 ( 6 n); cDNA 147 152 ( 6 n); score: 0.667 PPA cDNA 19 1 MATCH C10SLe0045H11.1- SGN-E228654+ 0.953 70 0.150 C PGS_C10SLe0045H11.1-_SGN-E228654+ (96255 96192,94110 94105) Alignment (genomic DNA sequence = upper lines): TAACTTAAAA TAAGCTATTT TGAGTATTGC CAAACAGTTA AATAAGTCAA AAACCAGCTT 96196 ||| |||||| || |||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGTTAAAA AAAACTATTT TGAGTATTGC CAAACAGTTA AATAAGTCAA AAACCAGCTT 142 TTAAGTCAGT TTAACCAGCT TTTAAGCTGA GCCAAACAGG CTCTAACTAA TTAAAAACAA 96136 |||| TTAA...... .......... .......... .......... .......... .......... 146 TAGGCATATA TTATGTATCA AAAAACTATT TTATACGATG AGACTAATTT TATCATGTCT 96076 .......... .......... .......... .......... .......... .......... 146 AATTATGCAG CAGATTAATT TATTTAATTA AAACAACATC CATAAAGATT TTTCTTGTTA 96016 .......... .......... .......... .......... .......... .......... 146 AAATGAGCGA AATGCAATTA ATATATTCGA GTTTGAGTTT TGAAAATGAA AACGCATGAG 95956 .......... .......... .......... .......... .......... .......... 146 ATAACTCTCG AGCCATGTGA ATTCAAATAT GGTCTATGAT GAGATACTTT TTCCGTCCAT 95896 .......... .......... .......... .......... .......... .......... 146 TTTTAATTGT CATAATATTT TTTTTAGAGC CAAATTATAA GAACTTTAAC TAACATTTTA 95836 .......... .......... .......... .......... .......... .......... 146 CAAAGTAATT TTTTAATCGA TATGCAAAAA ATTACAATTT ATGTACCTTT GTATAGTTTT 95776 .......... .......... .......... .......... .......... .......... 146 TGAACATATA TTTTTTTTGC TTTAAATCAA ATTAATGTAA TCTAATTTAA CTTTGAAAAT 95716 .......... .......... .......... .......... .......... .......... 146 TAATCAAATT GATTTTCGAA AAACGCAACA TGACAAATAA AAGTAGCCGA ATATTGTAGT 95656 .......... .......... .......... .......... .......... .......... 146 TAAATTTAAT TTTGAAAATT AATCTAATTG ATTTTCGAAA AATGCAGCAT GACAAATAAA 95596 .......... .......... .......... .......... .......... .......... 146 AGTAGACGAA TATTGTAGTT AAATTTAATT TTAAAAAATT AATCTAATTG ATTTTCAAAA 95536 .......... .......... .......... .......... .......... .......... 146 AGCGCAATAT GACAAATAAA AATAGACGAA TATTGTAGTT AAATTTAATT TTAAAAATTA 95476 .......... .......... .......... .......... .......... .......... 146 ATCCAATTGA TTTTCAAAAA ACGCAACATG ACAAATAAAA ATAAATAACA TATCATAGTT 95416 .......... .......... .......... .......... .......... .......... 146 AAAAATATGA ATCTATTTAC ATAAATAAAA AAAAAATCTT ATTAAAAACA TACTTTCCAT 95356 .......... .......... .......... .......... .......... .......... 146 AAATGAGCCC TCCAATACGC GTATCTAGAC GGCCTCCAAC AAGCCAAACA AAGCAGAAAA 95296 .......... .......... .......... .......... .......... .......... 146 AAACAATTTT ATATATATAT AGAGCCGCGT ATTCTGAGGT CCCAGCAAGG CCTAATTATA 95236 .......... .......... .......... .......... .......... .......... 146 CAAAGAGGCT ACTGCATTTT GGTTAATTTT CATGCAAAGA CTAATTATAC TAAGTTTAAT 95176 .......... .......... .......... .......... .......... .......... 146 GATCATTTGG AAGAACTTTA ATGGCAAATT CAACTTAATT AAACTGGAAA GGCTGCTTGA 95116 .......... .......... .......... .......... .......... .......... 146 AAACAGCTGT TTCAAATTGG GTATGGAAGT GGGGTTTAGA AATTCATTCT TGTGGTCCCT 95056 .......... .......... .......... .......... .......... .......... 146 TTTTTGCTAT CCACAGCCTG TTAAGAGCTT GCTGTTGGAG TAACCACTGA AAAAGCTCTT 94996 .......... .......... .......... .......... .......... .......... 146 GTTCATTGTG TTTTGAATTG GGTATTTCTT GTTTCTTTCT TCATTTTGGT TTACACCCAT 94936 .......... .......... .......... .......... .......... .......... 146 GTCAAAAGAT TCAATTTTTA ATAATGGAAT TGCACTAAAA AGCTCTTCTT GATTGTGTTT 94876 .......... .......... .......... .......... .......... .......... 146 GAATTTGGGT CTTTCTTGTT TCTTCCTTTT GGTTTACACC CATGTTAAAA GATTCAATTT 94816 .......... .......... .......... .......... .......... .......... 146 TTCAAGGGGA AGTTCTACTT GATAGCTCTT CTTGACTCTG GTTTTTATGG TGGATTTGCA 94756 .......... .......... .......... .......... .......... .......... 146 CTAAATAACT CTTCTTGATT GTGTTTATGT GGTGGCATTT AGGTGACTTG ACTTAGCTCT 94696 .......... .......... .......... .......... .......... .......... 146 TGTTGTTTCT TCCTTCTGGT TCACACCCTT TTCAAAAGAT TCAATTTTCA TGTTGGAGTT 94636 .......... .......... .......... .......... .......... .......... 146 GCACTAAAAA GCTGTTCTTG ATTGTGTTTT CATGGTGGCA TTGAGGTAAT CTGAATCAAG 94576 .......... .......... .......... .......... .......... .......... 146 TCTTCTTGTT TCTTCCTTAT GGTTCACACC CTTTTCAAAA GATTCAATTT TTCATGGTGG 94516 .......... .......... .......... .......... .......... .......... 146 AGTTGCACTA AAAAGCTGTT CTTGATTGTG TTTTCATGGT GGCATTGAGG TAATCTGAAT 94456 .......... .......... .......... .......... .......... .......... 146 GGGGTCTTCT TGTTTCCTCC TTTTGGTTCA CACCCTTTTC AAAAGATCTA ATTTTTTATG 94396 .......... .......... .......... .......... .......... .......... 146 GTGTGGTTGC TCTAAAAAGC TGTTCTTGAT TGTGTTTTCA TGGTAGCATT GAGGTAATCT 94336 .......... .......... .......... .......... .......... .......... 146 GAATGGGGTA TTCTTGTTTC CTCCTTTTGG TTCACACCCT TTTCAAAAGA TTTAATTTTT 94276 .......... .......... .......... .......... .......... .......... 146 CATGGTGTAG TTGCACTGAA AAGCTCAACT GTATTTTCAT GGTGGTATTG AGGTAACCTT 94216 .......... .......... .......... .......... .......... .......... 146 TCTTCTGGTG TACTGTTCGA ACTCGGTAGA TAATTGGCAC ACCCCTTGAC CCTTCTCCAC 94156 .......... .......... .......... .......... .......... .......... 146 TTAAATACGA GGCTTTTTGT TATGTCCGCC TTACTCACAA ATCAGGCATA G 94105 || | | .......... .......... .......... .......... .....GCTGA G 152 hqPGS_C10SLe0045H11.1-_SGN-E228654+ (96255 96192) ******************************************************************************** EST sequence 110 +strand 397 n (File: SGN-E229134+) 1 TTTTTTTTTT TTTTTTTTTT GGCTTAAAAT AAGTTTTTTT TAACTTAAAA TAAACCATTT 61 TGAGTATTGT CAAACAGTTA AATAAGTTAA AAAAAACTAT TTTGAGTATT GCCAAACAGT 121 TAAATAAGTC AAAAACCAGC TTTTAAGCTG AGCCAAACAG GCTCTAAGTA TCTCTGCTTA 181 AAATAACTGT GACATCTTTG CTTTTCTGGG AGTTTGAAAC CCAAAATCAG GTATCCTCAG 241 TCCTTTATCT GCCAATTGAT GCTAGTCAAG AAGACTTCAT GAATTTTCAG CATCCATCCG 301 TTCAATCACA CGACGTGCTT CTTCCTCTGT ACCAGGGACG ACATTCCTAA CTCGTGCACC 361 ATTTTTTCAG TGAATCTTGT TGGACAGTGA AAGTGAA Predicted gene structure (within gDNA segment 98401 to 93081): Exon 1 96255 96192 ( 64 n); cDNA 83 146 ( 64 n); score: 0.953 Intron 1 96191 94111 (2081 n); Pd: 0.000 (s: 1.00), Pa: 0.556 (s: 0) Exon 2 94110 94105 ( 6 n); cDNA 147 152 ( 6 n); score: 0.667 PPA cDNA 20 1 MATCH C10SLe0045H11.1- SGN-E229134+ 0.953 70 0.176 C PGS_C10SLe0045H11.1-_SGN-E229134+ (96255 96192,94110 94105) Alignment (genomic DNA sequence = upper lines): TAACTTAAAA TAAGCTATTT TGAGTATTGC CAAACAGTTA AATAAGTCAA AAACCAGCTT 96196 ||| |||||| || |||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGTTAAAA AAAACTATTT TGAGTATTGC CAAACAGTTA AATAAGTCAA AAACCAGCTT 142 TTAAGTCAGT TTAACCAGCT TTTAAGCTGA GCCAAACAGG CTCTAACTAA TTAAAAACAA 96136 |||| TTAA...... .......... .......... .......... .......... .......... 146 TAGGCATATA TTATGTATCA AAAAACTATT TTATACGATG AGACTAATTT TATCATGTCT 96076 .......... .......... .......... .......... .......... .......... 146 AATTATGCAG CAGATTAATT TATTTAATTA AAACAACATC CATAAAGATT TTTCTTGTTA 96016 .......... .......... .......... .......... .......... .......... 146 AAATGAGCGA AATGCAATTA ATATATTCGA GTTTGAGTTT TGAAAATGAA AACGCATGAG 95956 .......... .......... .......... .......... .......... .......... 146 ATAACTCTCG AGCCATGTGA ATTCAAATAT GGTCTATGAT GAGATACTTT TTCCGTCCAT 95896 .......... .......... .......... .......... .......... .......... 146 TTTTAATTGT CATAATATTT TTTTTAGAGC CAAATTATAA GAACTTTAAC TAACATTTTA 95836 .......... .......... .......... .......... .......... .......... 146 CAAAGTAATT TTTTAATCGA TATGCAAAAA ATTACAATTT ATGTACCTTT GTATAGTTTT 95776 .......... .......... .......... .......... .......... .......... 146 TGAACATATA TTTTTTTTGC TTTAAATCAA ATTAATGTAA TCTAATTTAA CTTTGAAAAT 95716 .......... .......... .......... .......... .......... .......... 146 TAATCAAATT GATTTTCGAA AAACGCAACA TGACAAATAA AAGTAGCCGA ATATTGTAGT 95656 .......... .......... .......... .......... .......... .......... 146 TAAATTTAAT TTTGAAAATT AATCTAATTG ATTTTCGAAA AATGCAGCAT GACAAATAAA 95596 .......... .......... .......... .......... .......... .......... 146 AGTAGACGAA TATTGTAGTT AAATTTAATT TTAAAAAATT AATCTAATTG ATTTTCAAAA 95536 .......... .......... .......... .......... .......... .......... 146 AGCGCAATAT GACAAATAAA AATAGACGAA TATTGTAGTT AAATTTAATT TTAAAAATTA 95476 .......... .......... .......... .......... .......... .......... 146 ATCCAATTGA TTTTCAAAAA ACGCAACATG ACAAATAAAA ATAAATAACA TATCATAGTT 95416 .......... .......... .......... .......... .......... .......... 146 AAAAATATGA ATCTATTTAC ATAAATAAAA AAAAAATCTT ATTAAAAACA TACTTTCCAT 95356 .......... .......... .......... .......... .......... .......... 146 AAATGAGCCC TCCAATACGC GTATCTAGAC GGCCTCCAAC AAGCCAAACA AAGCAGAAAA 95296 .......... .......... .......... .......... .......... .......... 146 AAACAATTTT ATATATATAT AGAGCCGCGT ATTCTGAGGT CCCAGCAAGG CCTAATTATA 95236 .......... .......... .......... .......... .......... .......... 146 CAAAGAGGCT ACTGCATTTT GGTTAATTTT CATGCAAAGA CTAATTATAC TAAGTTTAAT 95176 .......... .......... .......... .......... .......... .......... 146 GATCATTTGG AAGAACTTTA ATGGCAAATT CAACTTAATT AAACTGGAAA GGCTGCTTGA 95116 .......... .......... .......... .......... .......... .......... 146 AAACAGCTGT TTCAAATTGG GTATGGAAGT GGGGTTTAGA AATTCATTCT TGTGGTCCCT 95056 .......... .......... .......... .......... .......... .......... 146 TTTTTGCTAT CCACAGCCTG TTAAGAGCTT GCTGTTGGAG TAACCACTGA AAAAGCTCTT 94996 .......... .......... .......... .......... .......... .......... 146 GTTCATTGTG TTTTGAATTG GGTATTTCTT GTTTCTTTCT TCATTTTGGT TTACACCCAT 94936 .......... .......... .......... .......... .......... .......... 146 GTCAAAAGAT TCAATTTTTA ATAATGGAAT TGCACTAAAA AGCTCTTCTT GATTGTGTTT 94876 .......... .......... .......... .......... .......... .......... 146 GAATTTGGGT CTTTCTTGTT TCTTCCTTTT GGTTTACACC CATGTTAAAA GATTCAATTT 94816 .......... .......... .......... .......... .......... .......... 146 TTCAAGGGGA AGTTCTACTT GATAGCTCTT CTTGACTCTG GTTTTTATGG TGGATTTGCA 94756 .......... .......... .......... .......... .......... .......... 146 CTAAATAACT CTTCTTGATT GTGTTTATGT GGTGGCATTT AGGTGACTTG ACTTAGCTCT 94696 .......... .......... .......... .......... .......... .......... 146 TGTTGTTTCT TCCTTCTGGT TCACACCCTT TTCAAAAGAT TCAATTTTCA TGTTGGAGTT 94636 .......... .......... .......... .......... .......... .......... 146 GCACTAAAAA GCTGTTCTTG ATTGTGTTTT CATGGTGGCA TTGAGGTAAT CTGAATCAAG 94576 .......... .......... .......... .......... .......... .......... 146 TCTTCTTGTT TCTTCCTTAT GGTTCACACC CTTTTCAAAA GATTCAATTT TTCATGGTGG 94516 .......... .......... .......... .......... .......... .......... 146 AGTTGCACTA AAAAGCTGTT CTTGATTGTG TTTTCATGGT GGCATTGAGG TAATCTGAAT 94456 .......... .......... .......... .......... .......... .......... 146 GGGGTCTTCT TGTTTCCTCC TTTTGGTTCA CACCCTTTTC AAAAGATCTA ATTTTTTATG 94396 .......... .......... .......... .......... .......... .......... 146 GTGTGGTTGC TCTAAAAAGC TGTTCTTGAT TGTGTTTTCA TGGTAGCATT GAGGTAATCT 94336 .......... .......... .......... .......... .......... .......... 146 GAATGGGGTA TTCTTGTTTC CTCCTTTTGG TTCACACCCT TTTCAAAAGA TTTAATTTTT 94276 .......... .......... .......... .......... .......... .......... 146 CATGGTGTAG TTGCACTGAA AAGCTCAACT GTATTTTCAT GGTGGTATTG AGGTAACCTT 94216 .......... .......... .......... .......... .......... .......... 146 TCTTCTGGTG TACTGTTCGA ACTCGGTAGA TAATTGGCAC ACCCCTTGAC CCTTCTCCAC 94156 .......... .......... .......... .......... .......... .......... 146 TTAAATACGA GGCTTTTTGT TATGTCCGCC TTACTCACAA ATCAGGCATA G 94105 || | | .......... .......... .......... .......... .....GCTGA G 152 hqPGS_C10SLe0045H11.1-_SGN-E229134+ (96255 96192) ******************************************************************************** EST sequence 45 -strand 346 n (File: SGN-E391901-) 1 ATACTCTTCA CCCATGAGTT TGGACTGATT GACAAGAAGG AACTGGCTCC ACTTCAAGAG 61 ATTATAGAAT CCATCATCGT CCCATACTGA ACAATCGTGA TATTTCACTG TGCTGCTAAA 121 GCTGGAACTA AATAGTGTAA TGTAATGCAA TAAAGTTTCT CGTGGTCATC CAAAGTGTAT 181 AGCCTCAGCT GACAATTTGA AGTGTCTATG AATGTATAAT GGTTGTAGCT TTTTCTATAT 241 TGCTTTTAAG TAAAGTGCTT TTGTGACCCG TTTGGATGGG CTTAGTAAAA GCAGCTTTAA 301 AAAAGTACTT TTGAAAGGAC TGAAACTTAT TTTTAAAAAA AAAAAA Predicted gene structure (within gDNA segment 99830 to 95827): Exon 1 96550 96473 ( 78 n); cDNA 268 345 ( 78 n); score: 0.936 MATCH C10SLe0045H11.1- SGN-E391901- 0.936 78 0.225 C PGS_C10SLe0045H11.1-_SGN-E391901- (96550 96473) Alignment (genomic DNA sequence = upper lines): CCGTTTGGAT GGGCTTAATA AAAGCAGCTT TAAAAAAGTA CTTTTGAAAG TGCTGAAACT 96491 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||| CCGTTTGGAT GGGCTTAGTA AAAGCAGCTT TAAAAAAGTA CTTTTGAAAG GACTGAAACT 327 TATTTTTAAA AAAAGCAA 96473 |||||||||| |||| || TATTTTTAAA AAAAAAAA 345 hqPGS_C10SLe0045H11.1-_SGN-E391901- (96550 96473) ******************************************************************************** EST sequence 106 +strand 460 n (File: SGN-E243215+) 1 TTATTGTAGA TGACCAATTT TTTCTTCGAA TACGAAATTA AATTACAATA CACACAAAAA 61 AAATATTTGA ATTTTTTTTA TTTAAACTAA GGAATGAAAG AAAAAAACAA AATAAGAATA 121 AGAAACTCAA ATTATTATAA TAAAAGAAGT CAAAAAATAA TTTTTGTATG AAAAAATTAA 181 AATATACCTT GAACTTTGAT AGAAGAATCA TATATATCCC TAAATATTTT TTTTAAAAAA 241 AAATTAGAAG TAACAAATAT AAATTTAAAA CTAATTTTTT AACTTTCGTT AAATGAAGGG 301 TATATGTGAG CCATTTTCTA ACGGCAGGGG TATATGTGAG CCGTTTGTAT AACGATAAGG 361 GCATATATGA ACCACTTTTA TTACGAGGGA TATATCAGCT CTAAATGACA AAGTTGAGAG 421 GTATATCAGA CCCTTTTCCC TATTTTTTAA AATTTCATAC Predicted gene structure (within gDNA segment 100005 to 97381): Exon 1 99405 98947 ( 459 n); cDNA 1 458 ( 458 n); score: 0.908 MATCH C10SLe0045H11.1- SGN-E243215+ 0.908 459 0.998 C PGS_C10SLe0045H11.1-_SGN-E243215+ (99405 98947) Alignment (genomic DNA sequence = upper lines): TTATTGTAGA TGACCAAATT TTTTCTTCCA ATACGAAATT AAATTACAAT ATACACAAAA 99346 |||||||||| ||||| |||| |||||||| | |||||||||| |||||||||| | |||||||| TTATTGTAGA TGACC-AATT TTTTCTTCGA ATACGAAATT AAATTACAAT ACACACAAAA 59 AAAATAGTTT AATTTTTTAT TCTTTAAACT AAGGAATGAA AGAAAACAAC AAAATAAGAA 99286 |||||| || |||||||| | | |||||||| |||||||||| |||||| ||| |||||||||| AAAATATTTG AATTTTTT-T TATTTAAACT AAGGAATGAA AGAAAAAAAC AAAATAAGAA 118 TAAGAAATTC AAATAATTAT AATAAAAGAA GTCAAAAAAT AATTTATGTA TGAAAAAAAT 99226 ||||||| || |||| ||||| |||||||||| |||||||||| ||||| |||| || ||||||| TAAGAAACTC AAATTATTAT AATAAAAGAA GTCAAAAAAT AATTTTTGTA TG-AAAAAAT 177 TAAAATATAC CTTAAGCTTT GATAGAAGAA TAATATATAC CCCTAAATAA TTTTTTT--T 99168 |||||||||| ||| | |||| |||||||||| | ||||||| ||||||||| ||||||| TAAAATATAC CTTGAACTTT GATAGAAGAA TCATATATAT CCCTAAATAT TTTTTTTAAA 237 TAAAAATTAG AAGTAATAAA TATAAATTTA AAACTAATTT TTTAACTTCC GTTAAATGAA 99108 ||||||||| |||||| ||| |||||||||| |||||||||| |||||||| | |||||||||| AAAAAATTAG AAGTAACAAA TATAAATTTA AAACTAATTT TTTAACTTTC GTTAAATGAA 297 GGGTATATGT GAGCCATTTT ATAACGGCAG GGGTATATGT GAGCCGTTTG TATAACGGTA 99048 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||||| || GGGTATATGT GAGCCATTTT CTAACGGCAG GGGTATATGT GAGCCGTTTG TATAACGATA 357 AGGGCATATA TAAGCCACTT TTATAACGAG GGGTATATCA GCTCCAAATG TCAAAGTTGA 98988 |||||||||| | | |||||| |||| ||||| || ||||||| |||| ||||| ||||||||| AGGGCATATA TGAACCACTT TTATTACGAG GGATATATCA GCTCTAAATG ACAAAGTTGA 417 GGGGTATATC AGACCCTTTT CCCTAAAATT TAATAGCTAA T 98947 | |||||||| |||||||||| ||||| || ||| | | | | GAGGTATATC AGACCCTTTT CCCTATTTTT TAAAATTTCA T 458 hqPGS_C10SLe0045H11.1-_SGN-E243215+ (99405 98947) ******************************************************************************** EST sequence 3 -strand 701 n (File: SGN-E578389-) 1 TCAAATAATT ATAATAAATA AGTCAAAAAA ATAATTTATG TATTAAAAAA ATTTGAAATA 61 TACCTTGAAC TTTGAAAAAA GAATCATATA TGCCCCTAAA TATATTTTTT TTTAAAATTA 121 AAGTAAAATT ATAAATTTAA AAGTAATTTT TTCACTTTCG TTAAATGAAG GGTATATATG 181 AGCTCATTTT GTAACGGCAG AGGTATATGT GAACCATTTG TATAACGGTA AGGGTATATA 241 TGAGCCACTT TCATAACGAG GGGTATATCA GTTTCAAATG ACAAAGTTGA GGGGTATATC 301 ATACCCTTTT CCCATAATAT TATTCATTTT TGGGTTGACG GGTCAAACCT TGGGCTGCTT 361 AGGACTTGAT TAGACCGCTA TTTTATTGAC TCTTTAATTA ATGGGCAACT TTCACATATA 421 ACAAACAAAA AATTCATATT TGTATGCTAT AACAAAGTTT GCATAATTGC GCTCCATAGC 481 AAACATAAAA TTGTATAATT CGCTGACCTA AATTGTATAA TTCGCTGGCC TATTTCGCTG 541 CAATTGTATA ATTCGCTATC CTATTTAACT ACAATTGTAT AATTCGCTGC CTATTTCGCT 601 GCAATATTAT TATAAAATTT GCTTTGCATA TAATTGAACC GAATTAAAAT GTATGTATAT 661 TGCATAATTA TAAGTGTATA GCAATAAGAT ATATGTTTTT C Predicted gene structure (within gDNA segment 99887 to 94377): Exon 1 99277 98961 ( 317 n); cDNA 1 317 ( 317 n); score: 0.872 Intron 1 98960 98280 ( 681 n); Pd: 0.000 (s: 0.88), Pa: 0.201 (s: 0) Exon 2 98279 98274 ( 6 n); cDNA 318 323 ( 6 n); score: 0.833 MATCH C10SLe0045H11.1- SGN-E578389- 0.872 323 0.461 C PGS_C10SLe0045H11.1-_SGN-E578389- (99277 98961,98279 98274) Alignment (genomic DNA sequence = upper lines): TCAAATAATT ATAATAAAAG AAGTCA-AAA AATAATTTAT GTATGAAAAA AA-TTAAAAT 99220 |||||||||| ||||||| | |||||| ||| |||||||||| |||| ||||| || || |||| TCAAATAATT ATAATAA-AT AAGTCAAAAA AATAATTTAT GTATTAAAAA AATTTGAAAT 59 ATACCTTAAG CTTTGATAGA AGAATAATAT ATACCCCTAA ATAATTTTTT TTTAAAAATT 99160 ||||||| | |||||| | | ||||| |||| || ||||||| ||| ||||| ||| |||||| ATACCTTGAA CTTTGAAAAA AGAATCATAT ATGCCCCTAA ATATATTTTT TTTTAAAATT 119 AGAAGTAATA AATATAAATT TAAAACTAAT TTTTTAACTT CCGTTAAATG AAGGGTATAT 99100 | |||||| | | |||||||| ||||| |||| ||||| |||| ||||||||| |||||||||| A-AAGTAA-A ATTATAAATT TAAAAGTAAT TTTTTCACTT TCGTTAAATG AAGGGTATAT 177 GTGAGC-CAT TTTATAACGG CAGGGGTATA TGTGAGCCGT TTGTATAACG GTAAGGGCAT 99041 ||||| ||| ||| |||||| ||| |||||| ||||| || | |||||||||| ||||||| || ATGAGCTCAT TTTGTAACGG CAGAGGTATA TGTGAACCAT TTGTATAACG GTAAGGGTAT 237 ATATAAGCCA CTTTTATAAC GAGGGGTATA TCAGCTCCAA ATGTCAAAGT TGAGGGGTAT 98981 |||| ||||| |||| ||||| |||||||||| |||| | ||| ||| |||||| |||||||||| ATATGAGCCA CTTTCATAAC GAGGGGTATA TCAGTTTCAA ATGACAAAGT TGAGGGGTAT 297 ATCAGACCCT TTTCCCTAAA ATTTAATAGC TAATGAGTTA ATTTTTTATA TATCGTATTT 98921 |||| ||||| |||||| || ATCATACCCT TTTCCCATAA .......... .......... .......... .......... 317 CTTTCAAAAT TTATATTTGA CATATTACAT ATGATTTAAA GTTATGGAGA TAGACATCAA 98861 .......... .......... .......... .......... .......... .......... 317 TTGATTTCTC TATGAGGTCA ATTTATTTAA TTGTATGATG TATAATGTAC TCCAATTAAA 98801 .......... .......... .......... .......... .......... .......... 317 TAAAATTACA TAACACATAA TTAAGGGATC GGAATTTTAA TTAATTAAGA ATAAAATAAA 98741 .......... .......... .......... .......... .......... .......... 317 AGTTGACAAC AATACTAATT AACCTAAATT TTTGTCTTTT TCTCCACATA TATTTTAAAG 98681 .......... .......... .......... .......... .......... .......... 317 GAAATTTACA TAAATATACT GTATTAAAAT ATTTATCATT TATAGCAATA ATATTTTTTT 98621 .......... .......... .......... .......... .......... .......... 317 GACTTGATCA CTTTAATATA TTTACAGTAC AATTTTAATA CATATTACAA CGAACAATTT 98561 .......... .......... .......... .......... .......... .......... 317 GTTATTCACA TATAATACAA GTTTTATTGA TGGTTAATAT ATCTATATCA CATTTTAATA 98501 .......... .......... .......... .......... .......... .......... 317 CACTAATAAT ATGATGTGTC AATTTATTGC CAAACAAGCA TAATATATTT TCAAAAACAT 98441 .......... .......... .......... .......... .......... .......... 317 TTATAATACA TATATATATT GCATACATAA TTCATCTTTT AAATACGTTT TGTATATTTA 98381 .......... .......... .......... .......... .......... .......... 317 ACATTATTTT GCTATAAATG GTAATAAATT AAAAGTATCG TTCAAATAAA TAATTATTTA 98321 .......... .......... .......... .......... .......... .......... 317 TTAAAATATA ATTTTTCCTA TATTTTATTT GATGGGCCTA GTATGAT 98274 ||| || .......... .......... .......... .......... .TATTAT 323 hqPGS_C10SLe0045H11.1-_SGN-E578389- (99277 98961) ******************************************************************************** EST sequence 152 +strand 777 n (File: SGN-E260847+) 1 AAATTTGATC CTTGGGAACT ACCTGCTAAG GCGACATTTG GAGAACAAGA ATGGTATTTC 61 TTCAGTCCAA GAGATAGAAA ATATCCTAAC GGGGCGCGCC CAAATAGGGC GGCAACTTCC 121 GGTTATTGGA AGGCTACCGG AACCGACAAG CCGGTGCTCA CCGCCGGCGG GACCCAAAAA 181 GTAGGTGTCA AAAAGGCATT GGTGTTTTAT GGTGGCAAAC CACCCAAAGG GGTGAAGACA 241 AATTGGATTA TGCATGAATA TAGGCTTGCT GATAATAAAA CAAATAATAA GCCCCCTGGT 301 TGTGACCTTG CCAATAAAAA ATCACTAAGG CTAGATGATT GGGTTTTATG TAGGATTTAC 361 AAGAAGAATA ATACTCAAAG GCCAATTGAT CATGAAAGAG ATGATTTGAA TATTGATATG 421 ATGATGGGAT CATCATCAAT TCATCCATCA TGTATACCAA ATTCAATGTC AATGCCAAAT 481 ATATTTGGTC AACCAAAAAT ACCACAACTA AAATCTTCAA ATTTTGGCAC TACATTAATT 541 CATGATCAAA ATGACCAAAA TTTATATGAA GGTGGATCAC AATATTCTTC AAAAAGGCCA 601 CTAGCAAATT TGTATTGGAA TGATCAAGAT GGAGGAGCTA GTAACGATAA TTCTCAATCA 661 ACAAAAAGGT TTTTGACAGA AAATATGGAA GATGGATTAA ATATGAATGC TCGAGCAGAT 721 GAACAAAATG GATCTATCGT AAGTCTTTCT CAGTCAACAC AAGTTCTTGG GTCTCTA Predicted gene structure (within gDNA segment 104061 to 96377): Exon 1 103522 103498 ( 25 n); cDNA 1 25 ( 25 n); score: 0.880 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 0), Pa: 0.995 (s: 0.84) Exon 2 102869 102586 ( 284 n); cDNA 26 309 ( 284 n); score: 0.824 Intron 2 102585 102370 ( 216 n); Pd: 0.000 (s: 0.76), Pa: 0.944 (s: 0) Exon 3 102369 102346 ( 24 n); cDNA 310 330 ( 21 n); score: 0.667 Intron 3 102345 101688 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0.92) Exon 4 101687 101629 ( 59 n); cDNA 331 389 ( 59 n); score: 0.881 Intron 4 101628 99750 (1879 n); Pd: 0.000 (s: 0.86), Pa: 0.077 (s: 0) Exon 5 99749 99726 ( 24 n); cDNA 390 412 ( 23 n); score: 0.708 Intron 5 99725 97980 (1746 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.58) Exon 6 97979 97906 ( 74 n); cDNA 413 482 ( 70 n); score: 0.622 MATCH C10SLe0045H11.1- SGN-E260847+ 0.796 490 0.631 C PGS_C10SLe0045H11.1-_SGN-E260847+ (103522 103498,102869 102586,102369 102346,101687 101629,99749 99726,97979 97906) Alignment (genomic DNA sequence = upper lines): AAGTTTGATC CATGGGAACT CCCTGGTACT ATTTTCACCA CTATACTATA TTTTCTTGCC 103463 || ||||||| | |||||||| |||| AAATTTGATC CTTGGGAACT ACCTG..... .......... .......... .......... 25 CTATAACTTA TATATAGGGG AAAAAGATCG GAGTCAGCGA TGAACAATTA TTGTGTCTAA 103403 .......... .......... .......... .......... .......... .......... 25 ATTAAATTTT AAATATGCAA TAGATTGGTG ACGAATTTCG TTGCTAATTA ATTTTTTAGT 103343 .......... .......... .......... .......... .......... .......... 25 GATAAATTAA TATTTTTCCC CTTTTTAATC TTCATGTTTT TTATCACAAA GTTTTCTATG 103283 .......... .......... .......... .......... .......... .......... 25 ACCAACTTAT AAAGATTTGA ACTCGATCAA TTTTTTTTTT AGAATGAATG AACTTATGTT 103223 .......... .......... .......... .......... .......... .......... 25 ATATATAGTG ATATTTTAAA TGCTTTTTTA TATTTTCAAA AGATATCCAC GATAACGTGT 103163 .......... .......... .......... .......... .......... .......... 25 AAAAAGTGAA TTTGCAAAAA AAAAAATGTA GTACCTTTTA TTTAATTTTA TTGTAGATAA 103103 .......... .......... .......... .......... .......... .......... 25 TTTAGATTTT AATTTTGAAT TTGTTTAATT TAAATTCTGA ATCGTATAAT ATTTATTTAA 103043 .......... .......... .......... .......... .......... .......... 25 TTTCTATTTT TTGAGTTTTT TTTTGGAGGG TGCTTAAAAA GTAGTATTCA CAAATATAAA 102983 .......... .......... .......... .......... .......... .......... 25 GTAGTGGACA AACATAAAGT AGTGGACCCA TAATTTATTT TTTTAAAAAT TATATTAAAA 102923 .......... .......... .......... .......... .......... .......... 25 CTATTTGTTA AGTTTAAATT CTGAATTATC TTCTTATCAT GTGTTTAACG CAGCTAAGGC 102863 ||||||| .......... .......... .......... .......... .......... ...CTAAGGC 32 AATATTCGGA GAGCAAGAAT GGTTCTTTTT TAGTCCAAGA GATAGAAAAT ATCCTAACGG 102803 | ||| ||| || ||||||| ||| || || ||||||||| |||||||||| |||||||||| GACATTTGGA GAACAAGAAT GGTATTTCTT CAGTCCAAGA GATAGAAAAT ATCCTAACGG 92 GGCGAGGCCA AATCGGGCTG CAACATCGGG TTATTGGAAG GCTACCGGAA CCGACAAGCC 102743 |||| | ||| ||| |||| | |||| || || |||||||||| |||||||||| |||||||||| GGCGCGCCCA AATAGGGCGG CAACTTCCGG TTATTGGAAG GCTACCGGAA CCGACAAGCC 152 GGTTTTTACT TCCGGTGGAA CACAAAAGGT TGGGGTAAAA AAGGCGCTCG TTTTTTACGG 102683 ||| | || |||| || | | ||||| || || || ||| ||||| | | | ||||| || GGTGCTCACC GCCGGCGGGA CCCAAAAAGT AGGTGTCAAA AAGGCATTGG TGTTTTATGG 212 CGGTAAACCA CCAAAAGGGG TAAAAACTAA TTGGATCATG CATGAATACA GAGTTGTAGA 102623 || |||||| || ||||||| | || || || |||||| ||| |||||||| | | ||| || TGGCAAACCA CCCAAAGGGG TGAAGACAAA TTGGATTATG CATGAATATA GGCTTGCTGA 272 AAATAAAACA AATAACAAGC CACTTGGTTG TGATAATATT GTTGCCAACA AAAAAGGATC 102563 ||||||||| ||||| |||| | | |||||| ||| | TAATAAAACA AATAATAAGC CCCCTGGTTG TGACCTT... .......... .......... 309 TTTGAGGGTA AGTCCTAAAT TTTGCATCGA AACTAATTTC TCTATCGTAT CAGATAGGGA 102503 .......... .......... .......... .......... .......... .......... 309 TAAGATATAC GTATACTCTA ATCTCCTTGA ACCCCACAAG TACTATACTA GATATGTTGT 102443 .......... .......... .......... .......... .......... .......... 309 TGTTGTAGAT GACTTGATTC AACTTTCAAA TTTTTGATGA AAATGTTTAA GTTATATATA 102383 .......... .......... .......... .......... .......... .......... 309 CATATATATA TAGGCGGAGC TAAAAATTTC GATAAGGGGG TTTAAATCTG AAAAAATGGA 102323 || | |||||| || ||||| .......... ...GC-CA-A TAAAAA-ATC ACTAAGG... .......... .......... 330 TATACGAAAT AGCCGAAAGA GGTTCGACAT AGATTATTTT AACCATATAA AAATAATACA 102263 .......... .......... .......... .......... .......... .......... 330 ATTTTCATAT ATATATACGC GTGGTTAATA TGAGGAATAT TTTATACTAT TAATGTACTT 102203 .......... .......... .......... .......... .......... .......... 330 TAACCAGGGG CGGCTCTAGA GTTGATGAAC CCTCTCAGCG AAAATTTACG TTGTATATTT 102143 .......... .......... .......... .......... .......... .......... 330 AAGGTACCTT TTAATAATTT TTGTATTTAT ATATTAATTT TGAACCTCTT GAATATAAGA 102083 .......... .......... .......... .......... .......... .......... 330 TTAGACGTTG ACTTAGTGGT TTCAGGGGTT CAAATCACTA TTCTTTTTTT CCTAACCCCC 102023 .......... .......... .......... .......... .......... .......... 330 TTAATGAAAA TCCTGAATCG GCCACTAACT TTAACTGGTT ATAGAAGGTT AATCTTACTA 101963 .......... .......... .......... .......... .......... .......... 330 GAAAAAAGCA TGAAATTCTA ACCGACAAAG ATGTAGTCGC CCAGTTAGAT AAGACGTTTA 101903 .......... .......... .......... .......... .......... .......... 330 AATTGGGACG GATAGAGTTA CTTTATTTTT CACTGTCATA TGTTACTATA TATTGACACT 101843 .......... .......... .......... .......... .......... .......... 330 TCACTTAAAG AGTTATCATA TCGATATTTT TACTATTAGT GTACATAACA CAAACTCGAA 101783 .......... .......... .......... .......... .......... .......... 330 TAAATTCAAT GTTTCATTAG CTAGTTAATT AGTCTAACTT TTTTAAAAAA AAATATTTTT 101723 .......... .......... .......... .......... .......... .......... 330 CTTACTCCAC ACTATTTTAT TTTATTTTTT TGCAGCTAGA TGATTGGGTT TTATGTCGAA 101663 ||||| |||||||||| |||||| | | .......... .......... .......... .....CTAGA TGATTGGGTT TTATGTAGGA 355 TTTACAAGAA GAATAACACA CAAAGGTCCA TAGATGATTT GCATGATATG TTGGGATCGA 101603 |||||||||| |||||| || |||||| | | | || TTTACAAGAA GAATAATACT CAAAGGCCAA TTGA...... .......... .......... 389 TACCACAAAA TGTACCAAAT TCAATATTAC AAGGAATAAA GCCTTCAAAC TATGGTACAA 101543 .......... .......... .......... .......... .......... .......... 389 TATTGCTCGA AAATGAATCG AATATGTACG ATGGAATTAT GAATAACACG AACGATATTA 101483 .......... .......... .......... .......... .......... .......... 389 TCAACAATAA TAATAGATCC ATTCCACAAA TATCGTCAAA GAGAACGATG CATGGAGGTT 101423 .......... .......... .......... .......... .......... .......... 389 TGTATTGGAA TAACGACGAA GCAACAACAA CAACAACAAC TATTGATAGG AACCATTCTC 101363 .......... .......... .......... .......... .......... .......... 389 CAAATACAAA AAGGTTCCTT GTTGAGAACA ACGAGGACGA TGGACTTAAC ATGAATAATA 101303 .......... .......... .......... .......... .......... .......... 389 TTTCGCGAAT TACAAATCAT GAACAAAGTA GCTCCATTGC CAATTTCCTG AGCCAGTTTC 101243 .......... .......... .......... .......... .......... .......... 389 CTCAAAATCC TTCGATTCAA CAACAACAAC AACAACAAGA AGAAGTATTG GGATCTCTTA 101183 .......... .......... .......... .......... .......... .......... 389 ATGATGGGGT CGTCTTTCGA CAACCTTATA ATCAAGTTAC TGGCATGAAT TGGTACTCTT 101123 .......... .......... .......... .......... .......... .......... 389 AAAGATATAA AAAGGCAAAA AATAGTTAGC CCTGTAAAAT CAATCGATCA ATCAATCATA 101063 .......... .......... .......... .......... .......... .......... 389 GATATATTAT ATATGGATTT CGTTATATTT TACTTTTAGT TAGAATTAAT ATATAGAATA 101003 .......... .......... .......... .......... .......... .......... 389 TCTTCTATCT CACATTAACA AATAAGAACA TTTATAACAA ATAGTGAAAC TAAACTATCT 100943 .......... .......... .......... .......... .......... .......... 389 ACCATTAGAT AGACATTTTG TTAGACGTCG GATACTTTTT CAACAACTAT ATTTAGCGTC 100883 .......... .......... .......... .......... .......... .......... 389 TACGGAAAAG GGTCTAAAAT ACCCTTAAAG TATTGAAAAT GGTACAAAAT TACCCTTCAT 100823 .......... .......... .......... .......... .......... .......... 389 CCACCTACTG GCTCCAAAAT GCGTTTTTCA TCCACCTATT GGCTCCAAAA TACCCTTGTC 100763 .......... .......... .......... .......... .......... .......... 389 ATCCACCTTT GAGTTCGAAA TTGACCACTT ATTTAATGAT TTTAAATTTT TAAACTATTT 100703 .......... .......... .......... .......... .......... .......... 389 AAATATTTAT AAAATTATAT TTTAAAAAAG TGCATGAATT AATTCGGGAT GTATTACTGC 100643 .......... .......... .......... .......... .......... .......... 389 TTTAAATTTA ATCATAAATT TCTAATTCAA TCTTGAAAGA GAATCAAATT GAAATAAGCG 100583 .......... .......... .......... .......... .......... .......... 389 GCTCAGCATA TGTTTAATTG GGGATTCGAC TCTGACTCGA ATAATTTTGG ATGTCATTTT 100523 .......... .......... .......... .......... .......... .......... 389 CATTAATTTA TAATTTCATT GTGTTTTAGT AGTGTTTATG ACGATTTTGA TATTATAGTT 100463 .......... .......... .......... .......... .......... .......... 389 GAATTATTAA TTGAGTGAGG TTTAATTAGT AATGGGTGGG TAGTGGATTG ATTTATAAAT 100403 .......... .......... .......... .......... .......... .......... 389 TACACTAATA AGTTAAATTA TAACAAATAG TTGAGCGCCA CGTATTTAAA AAAATATTTA 100343 .......... .......... .......... .......... .......... .......... 389 AATAGTTTAA CTATAAAATC GTTAAATAAC TGGTCAATTT TGAACCAAAA GGTAGGTGGA 100283 .......... .......... .......... .......... .......... .......... 389 GAGTAATTTT ATATCATTTC CAATACTTTG AGGATATTTT AGACCTTTTT CCGTTCCATC 100223 .......... .......... .......... .......... .......... .......... 389 TATTCGATTC AAATGATTGC AACAATAAAT AAAATTATGA TCGACGCAAT TATCATTGTT 100163 .......... .......... .......... .......... .......... .......... 389 ATGATAATCT ACAACTTTTA CTATGTGCTT GTGGACCTAT ATAACTTGAT ATGTTGTTTT 100103 .......... .......... .......... .......... .......... .......... 389 GAAGAGTTAA AATAACTAGC TAAAATGAGT TGATTAATTA CACTAATTAT ATATATATAT 100043 .......... .......... .......... .......... .......... .......... 389 TTTTTTATAA AAGTTAATAT ATATTGTGTA ATTAAAATGA TTACACAATA TGTTTTGTAA 99983 .......... .......... .......... .......... .......... .......... 389 TCATTTTTGT ACTTAAAAGA ATGTTTTACT CCTTTATATG AAACTTCTCA TTATTTAAAT 99923 .......... .......... .......... .......... .......... .......... 389 TTAATTAGAT ACCAACAAAA ATATCGAATA CCCAAATAAA AAATAAAATA AGTCTAGGGG 99863 .......... .......... .......... .......... .......... .......... 389 AACTAAAAAA AAGTTTTAGT TGATGGAGTA TCGTCATTTA TTGGAGGAAA TTACGTGGTG 99803 .......... .......... .......... .......... .......... .......... 389 AATAACGTAC ATTGGTACTT GTCTTCCTCA AACTTATTAT TACGATATAA CAGACATTTT 99743 ||| .......... .......... .......... .......... .......... ...TCATGAA 396 ATAGTTGATT TGACATAAAA TTTAGGGAAA AGGGTCTGAT AGACCCCTCA ACTTTGTTAT 99683 | || ||||| ||| ||| AGAGATGATT TGA-ATA... .......... .......... .......... .......... 412 TTAGAGCTGA TATATCCCTT GTTATGAAAG TGACTCATAT ATACCCCTAT TTGTAAACAA 99623 .......... .......... .......... .......... .......... .......... 412 ATGGCTCACA TATACCCTTT TCCTCTAACG GAAATGAAAA AAATAATAAT TTTAATCTAA 99563 .......... .......... .......... .......... .......... .......... 412 ATTTTTATTA TTTTTTTCTA AAAAATATAA TACCATATGA GTAAATTTAA TCCTTGTCAA 99503 .......... .......... .......... .......... .......... .......... 412 ACATATTTTT TTTGACTTTT TTTGTTTCAA TGACTAATTT ATAATTATTA TTTTGATAAT 99443 .......... .......... .......... .......... .......... .......... 412 CAAATTTATT TATGTTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA CCAAATTTTT 99383 .......... .......... .......... .......... .......... .......... 412 TCTTCCAATA CGAAATTAAA TTACAATATA CACAAAAAAA ATAGTTTAAT TTTTTATTCT 99323 .......... .......... .......... .......... .......... .......... 412 TTAAACTAAG GAATGAAAGA AAACAACAAA ATAAGAATAA GAAATTCAAA TAATTATAAT 99263 .......... .......... .......... .......... .......... .......... 412 AAAAGAAGTC AAAAAATAAT TTATGTATGA AAAAAATTAA AATATACCTT AAGCTTTGAT 99203 .......... .......... .......... .......... .......... .......... 412 AGAAGAATAA TATATACCCC TAAATAATTT TTTTTTAAAA ATTAGAAGTA ATAAATATAA 99143 .......... .......... .......... .......... .......... .......... 412 ATTTAAAACT AATTTTTTAA CTTCCGTTAA ATGAAGGGTA TATGTGAGCC ATTTTATAAC 99083 .......... .......... .......... .......... .......... .......... 412 GGCAGGGGTA TATGTGAGCC GTTTGTATAA CGGTAAGGGC ATATATAAGC CACTTTTATA 99023 .......... .......... .......... .......... .......... .......... 412 ACGAGGGGTA TATCAGCTCC AAATGTCAAA GTTGAGGGGT ATATCAGACC CTTTTCCCTA 98963 .......... .......... .......... .......... .......... .......... 412 AAATTTAATA GCTAATGAGT TAATTTTTTA TATATCGTAT TTCTTTCAAA ATTTATATTT 98903 .......... .......... .......... .......... .......... .......... 412 GACATATTAC ATATGATTTA AAGTTATGGA GATAGACATC AATTGATTTC TCTATGAGGT 98843 .......... .......... .......... .......... .......... .......... 412 CAATTTATTT AATTGTATGA TGTATAATGT ACTCCAATTA AATAAAATTA CATAACACAT 98783 .......... .......... .......... .......... .......... .......... 412 AATTAAGGGA TCGGAATTTT AATTAATTAA GAATAAAATA AAAGTTGACA ACAATACTAA 98723 .......... .......... .......... .......... .......... .......... 412 TTAACCTAAA TTTTTGTCTT TTTCTCCACA TATATTTTAA AGGAAATTTA CATAAATATA 98663 .......... .......... .......... .......... .......... .......... 412 CTGTATTAAA ATATTTATCA TTTATAGCAA TAATATTTTT TTGACTTGAT CACTTTAATA 98603 .......... .......... .......... .......... .......... .......... 412 TATTTACAGT ACAATTTTAA TACATATTAC AACGAACAAT TTGTTATTCA CATATAATAC 98543 .......... .......... .......... .......... .......... .......... 412 AAGTTTTATT GATGGTTAAT ATATCTATAT CACATTTTAA TACACTAATA ATATGATGTG 98483 .......... .......... .......... .......... .......... .......... 412 TCAATTTATT GCCAAACAAG CATAATATAT TTTCAAAAAC ATTTATAATA CATATATATA 98423 .......... .......... .......... .......... .......... .......... 412 TTGCATACAT AATTCATCTT TTAAATACGT TTTGTATATT TAACATTATT TTGCTATAAA 98363 .......... .......... .......... .......... .......... .......... 412 TGGTAATAAA TTAAAAGTAT CGTTCAAATA AATAATTATT TATTAAAATA TAATTTTTCC 98303 .......... .......... .......... .......... .......... .......... 412 TATATTTTAT TTGATGGGCC TAGTATGATC CCTAGCAGTC CCAACAAAGA TTTTCTTTTT 98243 .......... .......... .......... .......... .......... .......... 412 AAAGCCCAAT TCTCTTTTGG GTTACTATTT TGCTGTATCA TAAAATTGGT ATCAAAATAA 98183 .......... .......... .......... .......... .......... .......... 412 CAAGACAGGA ATTTATAGCT TAATTTGGCT ATTAAGATTT TCTTATTTCC AGAATTCAAA 98123 .......... .......... .......... .......... .......... .......... 412 TTAAAAAATA ATATAGTATC TTAATTTATA ATTATTTACG TTATTAATAT GAATATGCAT 98063 .......... .......... .......... .......... .......... .......... 412 AACACCTATA TTGTATACCA ATGTATAATA GATATATAAC ATCTTATACC ATATTATACT 98003 .......... .......... .......... .......... .......... .......... 412 GTGTAGATAC TTCATTATAT TACTTAATAT AAATGATTGG AAAAGGTTTA ATTTAGAGAG 97943 || |||| ||||| || | | | | ||| | | .......... .......... ...TTGATAT -GATGATGGG ATCATCATCA ATTCATCCA- 447 GGTGGAGTAT ACGAAATTCT ACCTCTATTT CATATAT 97906 | |||| || |||||| | || || || |||| --TCATGTAT ACCAAATTCA ATGTCAATGC CAAATAT 482 hqPGS_C10SLe0045H11.1-_SGN-E260847+ (103522 103498,102869 102586,102369 102346,101687 101629,99749 99726) ******************************************************************************** EST sequence 78 +strand 776 n (File: SGN-E263296+) 1 TCGATTCCAC CCGACGGACG AAGAACTCAT CGTCCACTAC CTCAAAAAAC GAGTCGCCGG 61 CGCTCCGATT CCGGTGGATA TTATTGGTGA AATTGATCTT TATAAGTTTG ATCCATGGGA 121 ACTCCCTGCT AAGGCAATAT TCGGAGAGCA AGAATGGTTC TTTTTTAGTC CAAGAGATAG 181 AAAATATCCT AACGGGGCGA GGCCAAATCG GGCTGCAACA TCGGGTTATT GGAAGGCTAC 241 CGGAACCGAC AAGCCGGTTT TTACTTCCGG TGGAACACAA AAGGTTGGGG TAAAAAAGGC 301 GCTCGTTTTT TACGGCGGTA AACCACCAAA AGGGGTAAAA ACTAATTGGA TCATGCATGA 361 ATACAGAGTT GTAGAAAATA AAACAAATAA CAAGCCACTT GGTTGTGATA ATATTGTTGC 421 CAACAAAAAA GGATCTTTGA GGCTAGATGA TTGGGTTTTA TGTCGAATTT ACAAGAAGAA 481 TAACACACAA AGGTCCATAG ATGATTTGCA TGATATGTTG GGATCGATAC CACAAAATGT 541 ACCAAATTCA ATATTACAAG GAATAAAGCC TTCAAACTAT GGTACAATAT TGCTCGAAAA 601 TGAATCGAAT ATGTACGATG GAATTATGAA TAACACGAAC GATATTATCA ACAATAATAA 661 TAGATCCATT CCACAAATAT CGTCAAAGAG ACGNATGCAT GGGAGGTTTG TATTGGAATA 721 ACGACGAAGC AACACAACAA CAACAACTAT TGATAGGAAC ATTCTCCAAA TACAAA Predicted gene structure (within gDNA segment 104225 to 100743): Exon 1 103625 103498 ( 128 n); cDNA 1 128 ( 128 n); score: 1.000 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 102869 102556 ( 314 n); cDNA 129 442 ( 314 n); score: 1.000 Intron 2 102555 101688 ( 868 n); Pd: 0.984 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 101687 101353 ( 335 n); cDNA 443 776 ( 334 n); score: 0.978 MATCH C10SLe0045H11.1- SGN-E263296+ 0.990 777 1.001 C PGS_C10SLe0045H11.1-_SGN-E263296+ (103625 103498,102869 102556,101687 101353) Alignment (genomic DNA sequence = upper lines): TCGATTCCAC CCGACGGACG AAGAACTCAT CGTCCACTAC CTCAAAAAAC GAGTCGCCGG 103566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATTCCAC CCGACGGACG AAGAACTCAT CGTCCACTAC CTCAAAAAAC GAGTCGCCGG 60 CGCTCCGATT CCGGTGGATA TTATTGGTGA AATTGATCTT TATAAGTTTG ATCCATGGGA 103506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTCCGATT CCGGTGGATA TTATTGGTGA AATTGATCTT TATAAGTTTG ATCCATGGGA 120 ACTCCCTGGT ACTATTTTCA CCACTATACT ATATTTTCTT GCCCTATAAC TTATATATAG 103446 |||||||| ACTCCCTG.. .......... .......... .......... .......... .......... 128 GGGAAAAAGA TCGGAGTCAG CGATGAACAA TTATTGTGTC TAAATTAAAT TTTAAATATG 103386 .......... .......... .......... .......... .......... .......... 128 CAATAGATTG GTGACGAATT TCGTTGCTAA TTAATTTTTT AGTGATAAAT TAATATTTTT 103326 .......... .......... .......... .......... .......... .......... 128 CCCCTTTTTA ATCTTCATGT TTTTTATCAC AAAGTTTTCT ATGACCAACT TATAAAGATT 103266 .......... .......... .......... .......... .......... .......... 128 TGAACTCGAT CAATTTTTTT TTTAGAATGA ATGAACTTAT GTTATATATA GTGATATTTT 103206 .......... .......... .......... .......... .......... .......... 128 AAATGCTTTT TTATATTTTC AAAAGATATC CACGATAACG TGTAAAAAGT GAATTTGCAA 103146 .......... .......... .......... .......... .......... .......... 128 AAAAAAAAAT GTAGTACCTT TTATTTAATT TTATTGTAGA TAATTTAGAT TTTAATTTTG 103086 .......... .......... .......... .......... .......... .......... 128 AATTTGTTTA ATTTAAATTC TGAATCGTAT AATATTTATT TAATTTCTAT TTTTTGAGTT 103026 .......... .......... .......... .......... .......... .......... 128 TTTTTTTGGA GGGTGCTTAA AAAGTAGTAT TCACAAATAT AAAGTAGTGG ACAAACATAA 102966 .......... .......... .......... .......... .......... .......... 128 AGTAGTGGAC CCATAATTTA TTTTTTTAAA AATTATATTA AAACTATTTG TTAAGTTTAA 102906 .......... .......... .......... .......... .......... .......... 128 ATTCTGAATT ATCTTCTTAT CATGTGTTTA ACGCAGCTAA GGCAATATTC GGAGAGCAAG 102846 |||| |||||||||| |||||||||| .......... .......... .......... ......CTAA GGCAATATTC GGAGAGCAAG 152 AATGGTTCTT TTTTAGTCCA AGAGATAGAA AATATCCTAA CGGGGCGAGG CCAAATCGGG 102786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGTTCTT TTTTAGTCCA AGAGATAGAA AATATCCTAA CGGGGCGAGG CCAAATCGGG 212 CTGCAACATC GGGTTATTGG AAGGCTACCG GAACCGACAA GCCGGTTTTT ACTTCCGGTG 102726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCAACATC GGGTTATTGG AAGGCTACCG GAACCGACAA GCCGGTTTTT ACTTCCGGTG 272 GAACACAAAA GGTTGGGGTA AAAAAGGCGC TCGTTTTTTA CGGCGGTAAA CCACCAAAAG 102666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACACAAAA GGTTGGGGTA AAAAAGGCGC TCGTTTTTTA CGGCGGTAAA CCACCAAAAG 332 GGGTAAAAAC TAATTGGATC ATGCATGAAT ACAGAGTTGT AGAAAATAAA ACAAATAACA 102606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTAAAAAC TAATTGGATC ATGCATGAAT ACAGAGTTGT AGAAAATAAA ACAAATAACA 392 AGCCACTTGG TTGTGATAAT ATTGTTGCCA ACAAAAAAGG ATCTTTGAGG GTAAGTCCTA 102546 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCACTTGG TTGTGATAAT ATTGTTGCCA ACAAAAAAGG ATCTTTGAGG .......... 442 AATTTTGCAT CGAAACTAAT TTCTCTATCG TATCAGATAG GGATAAGATA TACGTATACT 102486 .......... .......... .......... .......... .......... .......... 442 CTAATCTCCT TGAACCCCAC AAGTACTATA CTAGATATGT TGTTGTTGTA GATGACTTGA 102426 .......... .......... .......... .......... .......... .......... 442 TTCAACTTTC AAATTTTTGA TGAAAATGTT TAAGTTATAT ATACATATAT ATATAGGCGG 102366 .......... .......... .......... .......... .......... .......... 442 AGCTAAAAAT TTCGATAAGG GGGTTTAAAT CTGAAAAAAT GGATATACGA AATAGCCGAA 102306 .......... .......... .......... .......... .......... .......... 442 AGAGGTTCGA CATAGATTAT TTTAACCATA TAAAAATAAT ACAATTTTCA TATATATATA 102246 .......... .......... .......... .......... .......... .......... 442 CGCGTGGTTA ATATGAGGAA TATTTTATAC TATTAATGTA CTTTAACCAG GGGCGGCTCT 102186 .......... .......... .......... .......... .......... .......... 442 AGAGTTGATG AACCCTCTCA GCGAAAATTT ACGTTGTATA TTTAAGGTAC CTTTTAATAA 102126 .......... .......... .......... .......... .......... .......... 442 TTTTTGTATT TATATATTAA TTTTGAACCT CTTGAATATA AGATTAGACG TTGACTTAGT 102066 .......... .......... .......... .......... .......... .......... 442 GGTTTCAGGG GTTCAAATCA CTATTCTTTT TTTCCTAACC CCCTTAATGA AAATCCTGAA 102006 .......... .......... .......... .......... .......... .......... 442 TCGGCCACTA ACTTTAACTG GTTATAGAAG GTTAATCTTA CTAGAAAAAA GCATGAAATT 101946 .......... .......... .......... .......... .......... .......... 442 CTAACCGACA AAGATGTAGT CGCCCAGTTA GATAAGACGT TTAAATTGGG ACGGATAGAG 101886 .......... .......... .......... .......... .......... .......... 442 TTACTTTATT TTTCACTGTC ATATGTTACT ATATATTGAC ACTTCACTTA AAGAGTTATC 101826 .......... .......... .......... .......... .......... .......... 442 ATATCGATAT TTTTACTATT AGTGTACATA ACACAAACTC GAATAAATTC AATGTTTCAT 101766 .......... .......... .......... .......... .......... .......... 442 TAGCTAGTTA ATTAGTCTAA CTTTTTTAAA AAAAAATATT TTTCTTACTC CACACTATTT 101706 .......... .......... .......... .......... .......... .......... 442 TATTTTATTT TTTTGCAGCT AGATGATTGG GTTTTATGTC GAATTTACAA GAAGAATAAC 101646 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........CT AGATGATTGG GTTTTATGTC GAATTTACAA GAAGAATAAC 484 ACACAAAGGT CCATAGATGA TTTGCATGAT ATGTTGGGAT CGATACCACA AAATGTACCA 101586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACAAAGGT CCATAGATGA TTTGCATGAT ATGTTGGGAT CGATACCACA AAATGTACCA 544 AATTCAATAT TACAAGGAAT AAAGCCTTCA AACTATGGTA CAATATTGCT CGAAAATGAA 101526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAATAT TACAAGGAAT AAAGCCTTCA AACTATGGTA CAATATTGCT CGAAAATGAA 604 TCGAATATGT ACGATGGAAT TATGAATAAC ACGAACGATA TTATCAACAA TAATAATAGA 101466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAATATGT ACGATGGAAT TATGAATAAC ACGAACGATA TTATCAACAA TAATAATAGA 664 TCCATTCCAC AAATATCGTC AAAGAGAACG ATGCAT-GGA GGTTTGTATT GGAATAACGA 101407 |||||||||| |||||||||| ||||||| |||||| ||| |||||||||| |||||||||| TCCATTCCAC AAATATCGTC AAAGAGACGN ATGCATGGGA GGTTTGTATT GGAATAACGA 724 CGAAGCAACA ACAACAACAA CAACTATTGA TAGGAACCAT TCTCCAAATA CAAA 101353 ||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||| CGAAGCAAC- ACAACAACAA CAACTATTGA TAGGAA-CAT TCTCCAAATA CAAA 776 hqPGS_C10SLe0045H11.1-_SGN-E263296+ (103625 103498,102869 102556,101687 101353) ******************************************************************************** EST sequence 151 +strand 735 n (File: SGN-E260846+) 1 TCGATTCCAC CCGACGGACG AAGAACTCAT CGTCCACTAC CTCAAAAAAC GAGTCGCCGG 61 CGCTCCGATT CCGGTGGATA TTATTGGTGA AATTGATCTT TATAAGTTTG ATCCATGGGA 121 ACTCCCTGCT AAGGCAATAT TCGGAGAGCA AGAATGGTTC TTTTTTAGTC CAAGAGATAG 181 AAAATATCCT AACGGGGCGA GGCCAAATCG GGCTGCAACA TCGGGTTATT GGAAGGCTAC 241 CGGAACCGAC AAGCCGGTTT TTACTTCCGG TGGAACACAA AAGGTTGGGG TAAAAAAGGC 301 GCTCGTTTTT TACGGCGGTA AACCACCAAA AGGGGTAAAA ACTAATTGGA TCATGCATGA 361 ATACAGAGTT GTAGAAAATA AAACAAATAA CAAGCCACTT GGTTGTGATA ATATTGTTGC 421 CAACAAAAAA GGATCTTTGA GGCTAGATGA TTGGGTTTTA TGTCGAATTT ACAAGAAGAA 481 TAACACACAA AGGTCCATAG ATGATTTGCA TGATATGTTG GGATCGATAC CACAAAATGT 541 ACCAAATTCA ATATTACAAG GAATAAAGCC TTCAAACTAT GGTACAATAT TGCTCGAAAA 601 TGAATCGAAT ATGTACGATG GAATTATGAA TAACACGAAC GATATTATCA ACAATAATAA 661 TAGATCCATT CCACAAATAT CGTCAAAGAG AACGATGCAT GGNAGTTTGT ATTGGAAATA 721 CGACGAAGCA ACAAC Predicted gene structure (within gDNA segment 104225 to 100785): Exon 1 103625 103498 ( 128 n); cDNA 1 128 ( 128 n); score: 1.000 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 102869 102556 ( 314 n); cDNA 129 442 ( 314 n); score: 1.000 Intron 2 102555 101688 ( 868 n); Pd: 0.984 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 101687 101395 ( 293 n); cDNA 443 735 ( 293 n); score: 0.986 MATCH C10SLe0045H11.1- SGN-E260846+ 0.995 735 1.000 C PGS_C10SLe0045H11.1-_SGN-E260846+ (103625 103498,102869 102556,101687 101395) Alignment (genomic DNA sequence = upper lines): TCGATTCCAC CCGACGGACG AAGAACTCAT CGTCCACTAC CTCAAAAAAC GAGTCGCCGG 103566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATTCCAC CCGACGGACG AAGAACTCAT CGTCCACTAC CTCAAAAAAC GAGTCGCCGG 60 CGCTCCGATT CCGGTGGATA TTATTGGTGA AATTGATCTT TATAAGTTTG ATCCATGGGA 103506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTCCGATT CCGGTGGATA TTATTGGTGA AATTGATCTT TATAAGTTTG ATCCATGGGA 120 ACTCCCTGGT ACTATTTTCA CCACTATACT ATATTTTCTT GCCCTATAAC TTATATATAG 103446 |||||||| ACTCCCTG.. .......... .......... .......... .......... .......... 128 GGGAAAAAGA TCGGAGTCAG CGATGAACAA TTATTGTGTC TAAATTAAAT TTTAAATATG 103386 .......... .......... .......... .......... .......... .......... 128 CAATAGATTG GTGACGAATT TCGTTGCTAA TTAATTTTTT AGTGATAAAT TAATATTTTT 103326 .......... .......... .......... .......... .......... .......... 128 CCCCTTTTTA ATCTTCATGT TTTTTATCAC AAAGTTTTCT ATGACCAACT TATAAAGATT 103266 .......... .......... .......... .......... .......... .......... 128 TGAACTCGAT CAATTTTTTT TTTAGAATGA ATGAACTTAT GTTATATATA GTGATATTTT 103206 .......... .......... .......... .......... .......... .......... 128 AAATGCTTTT TTATATTTTC AAAAGATATC CACGATAACG TGTAAAAAGT GAATTTGCAA 103146 .......... .......... .......... .......... .......... .......... 128 AAAAAAAAAT GTAGTACCTT TTATTTAATT TTATTGTAGA TAATTTAGAT TTTAATTTTG 103086 .......... .......... .......... .......... .......... .......... 128 AATTTGTTTA ATTTAAATTC TGAATCGTAT AATATTTATT TAATTTCTAT TTTTTGAGTT 103026 .......... .......... .......... .......... .......... .......... 128 TTTTTTTGGA GGGTGCTTAA AAAGTAGTAT TCACAAATAT AAAGTAGTGG ACAAACATAA 102966 .......... .......... .......... .......... .......... .......... 128 AGTAGTGGAC CCATAATTTA TTTTTTTAAA AATTATATTA AAACTATTTG TTAAGTTTAA 102906 .......... .......... .......... .......... .......... .......... 128 ATTCTGAATT ATCTTCTTAT CATGTGTTTA ACGCAGCTAA GGCAATATTC GGAGAGCAAG 102846 |||| |||||||||| |||||||||| .......... .......... .......... ......CTAA GGCAATATTC GGAGAGCAAG 152 AATGGTTCTT TTTTAGTCCA AGAGATAGAA AATATCCTAA CGGGGCGAGG CCAAATCGGG 102786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGTTCTT TTTTAGTCCA AGAGATAGAA AATATCCTAA CGGGGCGAGG CCAAATCGGG 212 CTGCAACATC GGGTTATTGG AAGGCTACCG GAACCGACAA GCCGGTTTTT ACTTCCGGTG 102726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCAACATC GGGTTATTGG AAGGCTACCG GAACCGACAA GCCGGTTTTT ACTTCCGGTG 272 GAACACAAAA GGTTGGGGTA AAAAAGGCGC TCGTTTTTTA CGGCGGTAAA CCACCAAAAG 102666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACACAAAA GGTTGGGGTA AAAAAGGCGC TCGTTTTTTA CGGCGGTAAA CCACCAAAAG 332 GGGTAAAAAC TAATTGGATC ATGCATGAAT ACAGAGTTGT AGAAAATAAA ACAAATAACA 102606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTAAAAAC TAATTGGATC ATGCATGAAT ACAGAGTTGT AGAAAATAAA ACAAATAACA 392 AGCCACTTGG TTGTGATAAT ATTGTTGCCA ACAAAAAAGG ATCTTTGAGG GTAAGTCCTA 102546 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCACTTGG TTGTGATAAT ATTGTTGCCA ACAAAAAAGG ATCTTTGAGG .......... 442 AATTTTGCAT CGAAACTAAT TTCTCTATCG TATCAGATAG GGATAAGATA TACGTATACT 102486 .......... .......... .......... .......... .......... .......... 442 CTAATCTCCT TGAACCCCAC AAGTACTATA CTAGATATGT TGTTGTTGTA GATGACTTGA 102426 .......... .......... .......... .......... .......... .......... 442 TTCAACTTTC AAATTTTTGA TGAAAATGTT TAAGTTATAT ATACATATAT ATATAGGCGG 102366 .......... .......... .......... .......... .......... .......... 442 AGCTAAAAAT TTCGATAAGG GGGTTTAAAT CTGAAAAAAT GGATATACGA AATAGCCGAA 102306 .......... .......... .......... .......... .......... .......... 442 AGAGGTTCGA CATAGATTAT TTTAACCATA TAAAAATAAT ACAATTTTCA TATATATATA 102246 .......... .......... .......... .......... .......... .......... 442 CGCGTGGTTA ATATGAGGAA TATTTTATAC TATTAATGTA CTTTAACCAG GGGCGGCTCT 102186 .......... .......... .......... .......... .......... .......... 442 AGAGTTGATG AACCCTCTCA GCGAAAATTT ACGTTGTATA TTTAAGGTAC CTTTTAATAA 102126 .......... .......... .......... .......... .......... .......... 442 TTTTTGTATT TATATATTAA TTTTGAACCT CTTGAATATA AGATTAGACG TTGACTTAGT 102066 .......... .......... .......... .......... .......... .......... 442 GGTTTCAGGG GTTCAAATCA CTATTCTTTT TTTCCTAACC CCCTTAATGA AAATCCTGAA 102006 .......... .......... .......... .......... .......... .......... 442 TCGGCCACTA ACTTTAACTG GTTATAGAAG GTTAATCTTA CTAGAAAAAA GCATGAAATT 101946 .......... .......... .......... .......... .......... .......... 442 CTAACCGACA AAGATGTAGT CGCCCAGTTA GATAAGACGT TTAAATTGGG ACGGATAGAG 101886 .......... .......... .......... .......... .......... .......... 442 TTACTTTATT TTTCACTGTC ATATGTTACT ATATATTGAC ACTTCACTTA AAGAGTTATC 101826 .......... .......... .......... .......... .......... .......... 442 ATATCGATAT TTTTACTATT AGTGTACATA ACACAAACTC GAATAAATTC AATGTTTCAT 101766 .......... .......... .......... .......... .......... .......... 442 TAGCTAGTTA ATTAGTCTAA CTTTTTTAAA AAAAAATATT TTTCTTACTC CACACTATTT 101706 .......... .......... .......... .......... .......... .......... 442 TATTTTATTT TTTTGCAGCT AGATGATTGG GTTTTATGTC GAATTTACAA GAAGAATAAC 101646 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........CT AGATGATTGG GTTTTATGTC GAATTTACAA GAAGAATAAC 484 ACACAAAGGT CCATAGATGA TTTGCATGAT ATGTTGGGAT CGATACCACA AAATGTACCA 101586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACAAAGGT CCATAGATGA TTTGCATGAT ATGTTGGGAT CGATACCACA AAATGTACCA 544 AATTCAATAT TACAAGGAAT AAAGCCTTCA AACTATGGTA CAATATTGCT CGAAAATGAA 101526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAATAT TACAAGGAAT AAAGCCTTCA AACTATGGTA CAATATTGCT CGAAAATGAA 604 TCGAATATGT ACGATGGAAT TATGAATAAC ACGAACGATA TTATCAACAA TAATAATAGA 101466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAATATGT ACGATGGAAT TATGAATAAC ACGAACGATA TTATCAACAA TAATAATAGA 664 TCCATTCCAC AAATATCGTC AAAGAGAACG ATGCATGGAG GTTTGTATTG GAATAACGAC 101406 |||||||||| |||||||||| |||||||||| |||||||| |||||||||| ||| ||||| TCCATTCCAC AAATATCGTC AAAGAGAACG ATGCATGGNA GTTTGTATTG GAAATACGAC 724 GAAGCAACAA C 101395 |||||||||| | GAAGCAACAA C 735 hqPGS_C10SLe0045H11.1-_SGN-E260846+ (103625 103498,102869 102556,101687 101395) ******************************************************************************** EST sequence 80 +strand 623 n (File: SGN-E262770+) 1 TCGATTCCAC CCGACGGACG AAGAACTCAT CGTCCACTAC CTCAAAAAAC GAGTCGCCGG 61 CGCTCCGATT CCGGTGGATA TTATTGGTGA AATTGATCTT TATAAGTTTG ATCCATGGGA 121 ACTCCCTGCT AAGGCAATAT TCGGAGAGCA AGAATGGTTC TTTTTTAGTC CAAGAGATAG 181 AAAATATCCT AACGGGGCGA GGCCAAATCG GGCTGCAACA TCGGGTTATT GGAAGGCTAC 241 CGGAACCGAC AAGCCGGTTT TTACTTCCGG TGGAACACAA AAGGTTGGGG TAAAAAAGGC 301 GCTCGTTTTT TACGGCGGTA AACCACCAAA AGGGGTAAAA ACTAATTGGA TCATGCATGA 361 ATACAGAGTT GTAGAAAATA AAACAAATAA CAAGCCACTT GGTTGTGATA ATATTGTTGC 421 CAACAAAAAA GGATCTTTGA GGCTAGATGA TTGGGTTTTA TGTCGAATTT ACAAGAAGAA 481 TAACACACAA AGGTCCATAG ATGATTTGCA TGATATGTTG GGATCGATAC CCACAAATGT 541 ACCAAATTCA ATATTACAAG GAATAAAGCC TTCAAACTAT GGTACAATAT TGCTCGAAAA 601 TGAATCGAAT ATGTACGATG GAA Predicted gene structure (within gDNA segment 104225 to 100897): Exon 1 103625 103498 ( 128 n); cDNA 1 128 ( 128 n); score: 1.000 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 102869 102556 ( 314 n); cDNA 129 442 ( 314 n); score: 1.000 Intron 2 102555 101688 ( 868 n); Pd: 0.984 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 101687 101507 ( 181 n); cDNA 443 623 ( 181 n); score: 0.983 MATCH C10SLe0045H11.1- SGN-E262770+ 0.995 623 1.000 C PGS_C10SLe0045H11.1-_SGN-E262770+ (103625 103498,102869 102556,101687 101507) Alignment (genomic DNA sequence = upper lines): TCGATTCCAC CCGACGGACG AAGAACTCAT CGTCCACTAC CTCAAAAAAC GAGTCGCCGG 103566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATTCCAC CCGACGGACG AAGAACTCAT CGTCCACTAC CTCAAAAAAC GAGTCGCCGG 60 CGCTCCGATT CCGGTGGATA TTATTGGTGA AATTGATCTT TATAAGTTTG ATCCATGGGA 103506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTCCGATT CCGGTGGATA TTATTGGTGA AATTGATCTT TATAAGTTTG ATCCATGGGA 120 ACTCCCTGGT ACTATTTTCA CCACTATACT ATATTTTCTT GCCCTATAAC TTATATATAG 103446 |||||||| ACTCCCTG.. .......... .......... .......... .......... .......... 128 GGGAAAAAGA TCGGAGTCAG CGATGAACAA TTATTGTGTC TAAATTAAAT TTTAAATATG 103386 .......... .......... .......... .......... .......... .......... 128 CAATAGATTG GTGACGAATT TCGTTGCTAA TTAATTTTTT AGTGATAAAT TAATATTTTT 103326 .......... .......... .......... .......... .......... .......... 128 CCCCTTTTTA ATCTTCATGT TTTTTATCAC AAAGTTTTCT ATGACCAACT TATAAAGATT 103266 .......... .......... .......... .......... .......... .......... 128 TGAACTCGAT CAATTTTTTT TTTAGAATGA ATGAACTTAT GTTATATATA GTGATATTTT 103206 .......... .......... .......... .......... .......... .......... 128 AAATGCTTTT TTATATTTTC AAAAGATATC CACGATAACG TGTAAAAAGT GAATTTGCAA 103146 .......... .......... .......... .......... .......... .......... 128 AAAAAAAAAT GTAGTACCTT TTATTTAATT TTATTGTAGA TAATTTAGAT TTTAATTTTG 103086 .......... .......... .......... .......... .......... .......... 128 AATTTGTTTA ATTTAAATTC TGAATCGTAT AATATTTATT TAATTTCTAT TTTTTGAGTT 103026 .......... .......... .......... .......... .......... .......... 128 TTTTTTTGGA GGGTGCTTAA AAAGTAGTAT TCACAAATAT AAAGTAGTGG ACAAACATAA 102966 .......... .......... .......... .......... .......... .......... 128 AGTAGTGGAC CCATAATTTA TTTTTTTAAA AATTATATTA AAACTATTTG TTAAGTTTAA 102906 .......... .......... .......... .......... .......... .......... 128 ATTCTGAATT ATCTTCTTAT CATGTGTTTA ACGCAGCTAA GGCAATATTC GGAGAGCAAG 102846 |||| |||||||||| |||||||||| .......... .......... .......... ......CTAA GGCAATATTC GGAGAGCAAG 152 AATGGTTCTT TTTTAGTCCA AGAGATAGAA AATATCCTAA CGGGGCGAGG CCAAATCGGG 102786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGTTCTT TTTTAGTCCA AGAGATAGAA AATATCCTAA CGGGGCGAGG CCAAATCGGG 212 CTGCAACATC GGGTTATTGG AAGGCTACCG GAACCGACAA GCCGGTTTTT ACTTCCGGTG 102726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCAACATC GGGTTATTGG AAGGCTACCG GAACCGACAA GCCGGTTTTT ACTTCCGGTG 272 GAACACAAAA GGTTGGGGTA AAAAAGGCGC TCGTTTTTTA CGGCGGTAAA CCACCAAAAG 102666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACACAAAA GGTTGGGGTA AAAAAGGCGC TCGTTTTTTA CGGCGGTAAA CCACCAAAAG 332 GGGTAAAAAC TAATTGGATC ATGCATGAAT ACAGAGTTGT AGAAAATAAA ACAAATAACA 102606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTAAAAAC TAATTGGATC ATGCATGAAT ACAGAGTTGT AGAAAATAAA ACAAATAACA 392 AGCCACTTGG TTGTGATAAT ATTGTTGCCA ACAAAAAAGG ATCTTTGAGG GTAAGTCCTA 102546 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCACTTGG TTGTGATAAT ATTGTTGCCA ACAAAAAAGG ATCTTTGAGG .......... 442 AATTTTGCAT CGAAACTAAT TTCTCTATCG TATCAGATAG GGATAAGATA TACGTATACT 102486 .......... .......... .......... .......... .......... .......... 442 CTAATCTCCT TGAACCCCAC AAGTACTATA CTAGATATGT TGTTGTTGTA GATGACTTGA 102426 .......... .......... .......... .......... .......... .......... 442 TTCAACTTTC AAATTTTTGA TGAAAATGTT TAAGTTATAT ATACATATAT ATATAGGCGG 102366 .......... .......... .......... .......... .......... .......... 442 AGCTAAAAAT TTCGATAAGG GGGTTTAAAT CTGAAAAAAT GGATATACGA AATAGCCGAA 102306 .......... .......... .......... .......... .......... .......... 442 AGAGGTTCGA CATAGATTAT TTTAACCATA TAAAAATAAT ACAATTTTCA TATATATATA 102246 .......... .......... .......... .......... .......... .......... 442 CGCGTGGTTA ATATGAGGAA TATTTTATAC TATTAATGTA CTTTAACCAG GGGCGGCTCT 102186 .......... .......... .......... .......... .......... .......... 442 AGAGTTGATG AACCCTCTCA GCGAAAATTT ACGTTGTATA TTTAAGGTAC CTTTTAATAA 102126 .......... .......... .......... .......... .......... .......... 442 TTTTTGTATT TATATATTAA TTTTGAACCT CTTGAATATA AGATTAGACG TTGACTTAGT 102066 .......... .......... .......... .......... .......... .......... 442 GGTTTCAGGG GTTCAAATCA CTATTCTTTT TTTCCTAACC CCCTTAATGA AAATCCTGAA 102006 .......... .......... .......... .......... .......... .......... 442 TCGGCCACTA ACTTTAACTG GTTATAGAAG GTTAATCTTA CTAGAAAAAA GCATGAAATT 101946 .......... .......... .......... .......... .......... .......... 442 CTAACCGACA AAGATGTAGT CGCCCAGTTA GATAAGACGT TTAAATTGGG ACGGATAGAG 101886 .......... .......... .......... .......... .......... .......... 442 TTACTTTATT TTTCACTGTC ATATGTTACT ATATATTGAC ACTTCACTTA AAGAGTTATC 101826 .......... .......... .......... .......... .......... .......... 442 ATATCGATAT TTTTACTATT AGTGTACATA ACACAAACTC GAATAAATTC AATGTTTCAT 101766 .......... .......... .......... .......... .......... .......... 442 TAGCTAGTTA ATTAGTCTAA CTTTTTTAAA AAAAAATATT TTTCTTACTC CACACTATTT 101706 .......... .......... .......... .......... .......... .......... 442 TATTTTATTT TTTTGCAGCT AGATGATTGG GTTTTATGTC GAATTTACAA GAAGAATAAC 101646 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........CT AGATGATTGG GTTTTATGTC GAATTTACAA GAAGAATAAC 484 ACACAAAGGT CCATAGATGA TTTGCATGAT ATGTTGGGAT CGATACCACA AAATGTACCA 101586 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| |||||||||| ACACAAAGGT CCATAGATGA TTTGCATGAT ATGTTGGGAT CGATACCCAC AAATGTACCA 544 AATTCAATAT TACAAGGAAT AAAGCCTTCA AACTATGGTA CAATATTGCT CGAAAATGAA 101526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAATAT TACAAGGAAT AAAGCCTTCA AACTATGGTA CAATATTGCT CGAAAATGAA 604 TCGAATATGT ACGATGGAA 101507 |||||||||| ||||||||| TCGAATATGT ACGATGGAA 623 hqPGS_C10SLe0045H11.1-_SGN-E262770+ (103625 103498,102869 102556,101687 101507) ******************************************************************************** EST sequence 79 +strand 782 n (File: SGN-E263151+) 1 TTATAATCAG GTCGCTCTGA TTAAATATAT TTGAAAATTT TTATCAAATA ATATTGTGGT 61 CATGGAGAGT ACCGATTCAT CAACCGGCTC TCATCATCAA CCACAATTGC CACCTGGATT 121 TCGATTTCAT CCAACTGATG AAGAGCTTGT GGTTCATTAT CTTAAGAAAA GAGTTGCCTC 181 TGTTCCTCTT CCTGTTTCTA TTATTGCTGA AGTTGATCTT TACAAATTTG ATCCTTGGGA 241 ACTACCTGCT AAGGCGACAT TTGGAGAACA AGAATGGTAT TTCTTCAGTC CAAGAGATAG 301 AAAATATCCT AACGGGGCGC GCCCAAATAG GGCGGCAACT TCCGGTTATT GGAAGGCTAC 361 CGGAACCGAC AAGCCGGTGC TCACCGCCGG CGGGACCCAA AAAGTAGGTG TCAAAAAGGC 421 ATTGGTGTTT TATGGTGGCA AACCACCCAA AGGGGTGAAG ACAAATTGGA TTATGCATGA 481 ATATAGGCTT GCTGATAATA AAACAAATAA TAAGCCCCCT GGTTGTGACC TTGCCAATAA 541 AAAATCACTA AGGCTAGATG ATTGGGTTTT ATGTAGGATT TACAAGAAGA ATAATACTCA 601 AAGGCCAATT GATCATGAAA GAGATGATTT GAATATTNGA TATGATGATG GGATCATCAT 661 CAATTCATCC ATCATGTATA CCCAATTCAA TGTCAATGCC AAATATATTT GGTCAACCAA 721 AAATACCACA ACTAAAATCT TCAAATTTTG GCACTACATT AATTCATGAT CAAAATGACC 781 AA Predicted gene structure (within gDNA segment 106291 to 99157): Exon 1 103684 103498 ( 187 n); cDNA 62 248 ( 187 n); score: 0.765 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 2 102869 102586 ( 284 n); cDNA 249 532 ( 284 n); score: 0.824 Intron 2 102585 102370 ( 216 n); Pd: 0.000 (s: 0.76), Pa: 0.944 (s: 0) Exon 3 102369 102346 ( 24 n); cDNA 533 553 ( 21 n); score: 0.667 Intron 3 102345 101688 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0.92) Exon 4 101687 101592 ( 96 n); cDNA 554 646 ( 93 n); score: 0.740 MATCH C10SLe0045H11.1- SGN-E263151+ 0.790 591 0.756 C PGS_C10SLe0045H11.1-_SGN-E263151+ (103684 103498,102869 102586,102369 102346,101687 101592) Alignment (genomic DNA sequence = upper lines): ATGGAAAGTA CGGATTCATC AACCGGGACA CGTCATCAGC CTCAACTCCC ACCGGGGTTT 103625 ||||| |||| | |||||||| |||||| | | |||||| | | ||| | || ||| || ||| ATGGAGAGTA CCGATTCATC AACCGGCTCT CATCATCAAC CACAATTGCC ACCTGGATTT 121 CGATTCCACC CGACGGACGA AGAACTCATC GTCCACTACC TCAAAAAACG AGTCGCCGGC 103565 ||||| || | | || || || ||| || | || || || | | || ||| | ||| ||| CGATTTCATC CAACTGATGA AGAGCTTGTG GTTCATTATC TTAAGAAAAG AGTTGCCTCT 181 GCTCCGATTC CGGTGGATAT TATTGGTGAA ATTGATCTTT ATAAGTTTGA TCCATGGGAA 103505 | ||| ||| | || ||| ||||| |||| ||||||||| | || ||||| ||| |||||| GTTCCTCTTC CTGTTTCTAT TATTGCTGAA GTTGATCTTT ACAAATTTGA TCCTTGGGAA 241 CTCCCTGGTA CTATTTTCAC CACTATACTA TATTTTCTTG CCCTATAACT TATATATAGG 103445 || |||| CTACCTG... .......... .......... .......... .......... .......... 248 GGAAAAAGAT CGGAGTCAGC GATGAACAAT TATTGTGTCT AAATTAAATT TTAAATATGC 103385 .......... .......... .......... .......... .......... .......... 248 AATAGATTGG TGACGAATTT CGTTGCTAAT TAATTTTTTA GTGATAAATT AATATTTTTC 103325 .......... .......... .......... .......... .......... .......... 248 CCCTTTTTAA TCTTCATGTT TTTTATCACA AAGTTTTCTA TGACCAACTT ATAAAGATTT 103265 .......... .......... .......... .......... .......... .......... 248 GAACTCGATC AATTTTTTTT TTAGAATGAA TGAACTTATG TTATATATAG TGATATTTTA 103205 .......... .......... .......... .......... .......... .......... 248 AATGCTTTTT TATATTTTCA AAAGATATCC ACGATAACGT GTAAAAAGTG AATTTGCAAA 103145 .......... .......... .......... .......... .......... .......... 248 AAAAAAAATG TAGTACCTTT TATTTAATTT TATTGTAGAT AATTTAGATT TTAATTTTGA 103085 .......... .......... .......... .......... .......... .......... 248 ATTTGTTTAA TTTAAATTCT GAATCGTATA ATATTTATTT AATTTCTATT TTTTGAGTTT 103025 .......... .......... .......... .......... .......... .......... 248 TTTTTTGGAG GGTGCTTAAA AAGTAGTATT CACAAATATA AAGTAGTGGA CAAACATAAA 102965 .......... .......... .......... .......... .......... .......... 248 GTAGTGGACC CATAATTTAT TTTTTTAAAA ATTATATTAA AACTATTTGT TAAGTTTAAA 102905 .......... .......... .......... .......... .......... .......... 248 TTCTGAATTA TCTTCTTATC ATGTGTTTAA CGCAGCTAAG GCAATATTCG GAGAGCAAGA 102845 ||||| || | ||| | |||| ||||| .......... .......... .......... .....CTAAG GCGACATTTG GAGAACAAGA 273 ATGGTTCTTT TTTAGTCCAA GAGATAGAAA ATATCCTAAC GGGGCGAGGC CAAATCGGGC 102785 ||||| || || ||||||| |||||||||| |||||||||| |||||| | | ||||| |||| ATGGTATTTC TTCAGTCCAA GAGATAGAAA ATATCCTAAC GGGGCGCGCC CAAATAGGGC 333 TGCAACATCG GGTTATTGGA AGGCTACCGG AACCGACAAG CCGGTTTTTA CTTCCGGTGG 102725 ||||| || |||||||||| |||||||||| |||||||||| ||||| | | | |||| || GGCAACTTCC GGTTATTGGA AGGCTACCGG AACCGACAAG CCGGTGCTCA CCGCCGGCGG 393 AACACAAAAG GTTGGGGTAA AAAAGGCGCT CGTTTTTTAC GGCGGTAAAC CACCAAAAGG 102665 || ||||| || || || | ||||||| | || ||||| || || |||| |||| ||||| GACCCAAAAA GTAGGTGTCA AAAAGGCATT GGTGTTTTAT GGTGGCAAAC CACCCAAAGG 453 GGTAAAAACT AATTGGATCA TGCATGAATA CAGAGTTGTA GAAAATAAAA CAAATAACAA 102605 ||| || || |||||||| | |||||||||| || ||| || ||||||| ||||||| || GGTGAAGACA AATTGGATTA TGCATGAATA TAGGCTTGCT GATAATAAAA CAAATAATAA 513 GCCACTTGGT TGTGATAATA TTGTTGCCAA CAAAAAAGGA TCTTTGAGGG TAAGTCCTAA 102545 ||| | |||| ||||| | GCCCCCTGGT TGTGACCTT. .......... .......... .......... .......... 532 ATTTTGCATC GAAACTAATT TCTCTATCGT ATCAGATAGG GATAAGATAT ACGTATACTC 102485 .......... .......... .......... .......... .......... .......... 532 TAATCTCCTT GAACCCCACA AGTACTATAC TAGATATGTT GTTGTTGTAG ATGACTTGAT 102425 .......... .......... .......... .......... .......... .......... 532 TCAACTTTCA AATTTTTGAT GAAAATGTTT AAGTTATATA TACATATATA TATAGGCGGA 102365 || | .......... .......... .......... .......... .......... .....GC-CA 536 GCTAAAAATT TCGATAAGGG GGTTTAAATC TGAAAAAATG GATATACGAA ATAGCCGAAA 102305 |||||| || ||||| -ATAAAAA-A TCACTAAGG. .......... .......... .......... .......... 553 GAGGTTCGAC ATAGATTATT TTAACCATAT AAAAATAATA CAATTTTCAT ATATATATAC 102245 .......... .......... .......... .......... .......... .......... 553 GCGTGGTTAA TATGAGGAAT ATTTTATACT ATTAATGTAC TTTAACCAGG GGCGGCTCTA 102185 .......... .......... .......... .......... .......... .......... 553 GAGTTGATGA ACCCTCTCAG CGAAAATTTA CGTTGTATAT TTAAGGTACC TTTTAATAAT 102125 .......... .......... .......... .......... .......... .......... 553 TTTTGTATTT ATATATTAAT TTTGAACCTC TTGAATATAA GATTAGACGT TGACTTAGTG 102065 .......... .......... .......... .......... .......... .......... 553 GTTTCAGGGG TTCAAATCAC TATTCTTTTT TTCCTAACCC CCTTAATGAA AATCCTGAAT 102005 .......... .......... .......... .......... .......... .......... 553 CGGCCACTAA CTTTAACTGG TTATAGAAGG TTAATCTTAC TAGAAAAAAG CATGAAATTC 101945 .......... .......... .......... .......... .......... .......... 553 TAACCGACAA AGATGTAGTC GCCCAGTTAG ATAAGACGTT TAAATTGGGA CGGATAGAGT 101885 .......... .......... .......... .......... .......... .......... 553 TACTTTATTT TTCACTGTCA TATGTTACTA TATATTGACA CTTCACTTAA AGAGTTATCA 101825 .......... .......... .......... .......... .......... .......... 553 TATCGATATT TTTACTATTA GTGTACATAA CACAAACTCG AATAAATTCA ATGTTTCATT 101765 .......... .......... .......... .......... .......... .......... 553 AGCTAGTTAA TTAGTCTAAC TTTTTTAAAA AAAAATATTT TTCTTACTCC ACACTATTTT 101705 .......... .......... .......... .......... .......... .......... 553 ATTTTATTTT TTTGCAGCTA GATGATTGGG TTTTATGTCG AATTTACAAG AAGAATAACA 101645 ||| |||||||||| |||||||| | ||||||||| |||||||| | .......... .......CTA GATGATTGGG TTTTATGTAG GATTTACAAG AAGAATAATA 596 CACAAAGGTC CATAGATGAT TTGCATGATA TGTTGGGATC GATACCACAA AAT 101592 | |||||| | || ||| | || | || | || | || || | | || CTCAAAGGCC AATTGATCA- -TGAAAGAGA TGATTTGA-A TATTNGATAT GAT 646 hqPGS_C10SLe0045H11.1-_SGN-E263151+ (103684 103498,102869 102586,102369 102346,101687 101592) ******************************************************************************** EST sequence 131 +strand 579 n (File: SGN-E276952+) 1 AAAGTACGGA TTCATCAACC GGGACACGTC ATCAGCCTCA ACTCCCACCG GGGTTTCGAT 61 TCCACCCGAC GGACGAAGAA CTCATCGTCC ACTACCTCAA AAAACGAGTC GCCGGCGCTC 121 CGATTCCGGT GGATATTATT GGTGAAATTG ATCTTTATAA GTTTGATCCA TGGGAACTCC 181 CTGCTAAGGC AATATTCGGA GAGCAAGAAT GGTTCTTTTT TAGTCCAAGA GATAGAAAAT 241 ATCCTAACGG GGCGAGGCCA AATCGGGCTG CAACATCGGG TTATTGGAAG GCTACCGGAA 301 CCGACAAGCC GGTTTTTACT TCCGGTGGAA CACAAAAGGT TGGGGTAAAA AAGGCGCTCG 361 TTTTTTACGG CGGTAAACCA CCAAAAGGGG TAAAAACTAA TTGGATCATG CATGAATACA 421 GAGTTGTAGA AAATAAAACA AATAACAAGC CACTTGGTTG TGATAATATT GTTGCCAACA 481 AAAAAGGATC TTTGAGGCTA GATGATTGGG TTTTATGTCG AATTTACAAG AAGAATAACA 541 CACAAAGGTC CATAGATGAT TTGCATGATA TGTTGGGAT Predicted gene structure (within gDNA segment 104280 to 100996): Exon 1 103680 103498 ( 183 n); cDNA 1 183 ( 183 n); score: 1.000 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 102869 102556 ( 314 n); cDNA 184 497 ( 314 n); score: 1.000 Intron 2 102555 101688 ( 868 n); Pd: 0.984 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 3 101687 101606 ( 82 n); cDNA 498 579 ( 82 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E276952+ 1.000 579 1.000 C PGS_C10SLe0045H11.1-_SGN-E276952+ (103680 103498,102869 102556,101687 101606) Alignment (genomic DNA sequence = upper lines): AAAGTACGGA TTCATCAACC GGGACACGTC ATCAGCCTCA ACTCCCACCG GGGTTTCGAT 103621 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTACGGA TTCATCAACC GGGACACGTC ATCAGCCTCA ACTCCCACCG GGGTTTCGAT 60 TCCACCCGAC GGACGAAGAA CTCATCGTCC ACTACCTCAA AAAACGAGTC GCCGGCGCTC 103561 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCACCCGAC GGACGAAGAA CTCATCGTCC ACTACCTCAA AAAACGAGTC GCCGGCGCTC 120 CGATTCCGGT GGATATTATT GGTGAAATTG ATCTTTATAA GTTTGATCCA TGGGAACTCC 103501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATTCCGGT GGATATTATT GGTGAAATTG ATCTTTATAA GTTTGATCCA TGGGAACTCC 180 CTGGTACTAT TTTCACCACT ATACTATATT TTCTTGCCCT ATAACTTATA TATAGGGGAA 103441 ||| CTG....... .......... .......... .......... .......... .......... 183 AAAGATCGGA GTCAGCGATG AACAATTATT GTGTCTAAAT TAAATTTTAA ATATGCAATA 103381 .......... .......... .......... .......... .......... .......... 183 GATTGGTGAC GAATTTCGTT GCTAATTAAT TTTTTAGTGA TAAATTAATA TTTTTCCCCT 103321 .......... .......... .......... .......... .......... .......... 183 TTTTAATCTT CATGTTTTTT ATCACAAAGT TTTCTATGAC CAACTTATAA AGATTTGAAC 103261 .......... .......... .......... .......... .......... .......... 183 TCGATCAATT TTTTTTTTAG AATGAATGAA CTTATGTTAT ATATAGTGAT ATTTTAAATG 103201 .......... .......... .......... .......... .......... .......... 183 CTTTTTTATA TTTTCAAAAG ATATCCACGA TAACGTGTAA AAAGTGAATT TGCAAAAAAA 103141 .......... .......... .......... .......... .......... .......... 183 AAAATGTAGT ACCTTTTATT TAATTTTATT GTAGATAATT TAGATTTTAA TTTTGAATTT 103081 .......... .......... .......... .......... .......... .......... 183 GTTTAATTTA AATTCTGAAT CGTATAATAT TTATTTAATT TCTATTTTTT GAGTTTTTTT 103021 .......... .......... .......... .......... .......... .......... 183 TTGGAGGGTG CTTAAAAAGT AGTATTCACA AATATAAAGT AGTGGACAAA CATAAAGTAG 102961 .......... .......... .......... .......... .......... .......... 183 TGGACCCATA ATTTATTTTT TTAAAAATTA TATTAAAACT ATTTGTTAAG TTTAAATTCT 102901 .......... .......... .......... .......... .......... .......... 183 GAATTATCTT CTTATCATGT GTTTAACGCA GCTAAGGCAA TATTCGGAGA GCAAGAATGG 102841 ||||||||| |||||||||| |||||||||| .......... .......... .......... .CTAAGGCAA TATTCGGAGA GCAAGAATGG 212 TTCTTTTTTA GTCCAAGAGA TAGAAAATAT CCTAACGGGG CGAGGCCAAA TCGGGCTGCA 102781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTTTA GTCCAAGAGA TAGAAAATAT CCTAACGGGG CGAGGCCAAA TCGGGCTGCA 272 ACATCGGGTT ATTGGAAGGC TACCGGAACC GACAAGCCGG TTTTTACTTC CGGTGGAACA 102721 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCGGGTT ATTGGAAGGC TACCGGAACC GACAAGCCGG TTTTTACTTC CGGTGGAACA 332 CAAAAGGTTG GGGTAAAAAA GGCGCTCGTT TTTTACGGCG GTAAACCACC AAAAGGGGTA 102661 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAGGTTG GGGTAAAAAA GGCGCTCGTT TTTTACGGCG GTAAACCACC AAAAGGGGTA 392 AAAACTAATT GGATCATGCA TGAATACAGA GTTGTAGAAA ATAAAACAAA TAACAAGCCA 102601 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACTAATT GGATCATGCA TGAATACAGA GTTGTAGAAA ATAAAACAAA TAACAAGCCA 452 CTTGGTTGTG ATAATATTGT TGCCAACAAA AAAGGATCTT TGAGGGTAAG TCCTAAATTT 102541 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CTTGGTTGTG ATAATATTGT TGCCAACAAA AAAGGATCTT TGAGG..... .......... 497 TGCATCGAAA CTAATTTCTC TATCGTATCA GATAGGGATA AGATATACGT ATACTCTAAT 102481 .......... .......... .......... .......... .......... .......... 497 CTCCTTGAAC CCCACAAGTA CTATACTAGA TATGTTGTTG TTGTAGATGA CTTGATTCAA 102421 .......... .......... .......... .......... .......... .......... 497 CTTTCAAATT TTTGATGAAA ATGTTTAAGT TATATATACA TATATATATA GGCGGAGCTA 102361 .......... .......... .......... .......... .......... .......... 497 AAAATTTCGA TAAGGGGGTT TAAATCTGAA AAAATGGATA TACGAAATAG CCGAAAGAGG 102301 .......... .......... .......... .......... .......... .......... 497 TTCGACATAG ATTATTTTAA CCATATAAAA ATAATACAAT TTTCATATAT ATATACGCGT 102241 .......... .......... .......... .......... .......... .......... 497 GGTTAATATG AGGAATATTT TATACTATTA ATGTACTTTA ACCAGGGGCG GCTCTAGAGT 102181 .......... .......... .......... .......... .......... .......... 497 TGATGAACCC TCTCAGCGAA AATTTACGTT GTATATTTAA GGTACCTTTT AATAATTTTT 102121 .......... .......... .......... .......... .......... .......... 497 GTATTTATAT ATTAATTTTG AACCTCTTGA ATATAAGATT AGACGTTGAC TTAGTGGTTT 102061 .......... .......... .......... .......... .......... .......... 497 CAGGGGTTCA AATCACTATT CTTTTTTTCC TAACCCCCTT AATGAAAATC CTGAATCGGC 102001 .......... .......... .......... .......... .......... .......... 497 CACTAACTTT AACTGGTTAT AGAAGGTTAA TCTTACTAGA AAAAAGCATG AAATTCTAAC 101941 .......... .......... .......... .......... .......... .......... 497 CGACAAAGAT GTAGTCGCCC AGTTAGATAA GACGTTTAAA TTGGGACGGA TAGAGTTACT 101881 .......... .......... .......... .......... .......... .......... 497 TTATTTTTCA CTGTCATATG TTACTATATA TTGACACTTC ACTTAAAGAG TTATCATATC 101821 .......... .......... .......... .......... .......... .......... 497 GATATTTTTA CTATTAGTGT ACATAACACA AACTCGAATA AATTCAATGT TTCATTAGCT 101761 .......... .......... .......... .......... .......... .......... 497 AGTTAATTAG TCTAACTTTT TTAAAAAAAA ATATTTTTCT TACTCCACAC TATTTTATTT 101701 .......... .......... .......... .......... .......... .......... 497 TATTTTTTTG CAGCTAGATG ATTGGGTTTT ATGTCGAATT TACAAGAAGA ATAACACACA 101641 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...CTAGATG ATTGGGTTTT ATGTCGAATT TACAAGAAGA ATAACACACA 544 AAGGTCCATA GATGATTTGC ATGATATGTT GGGAT 101606 |||||||||| |||||||||| |||||||||| ||||| AAGGTCCATA GATGATTTGC ATGATATGTT GGGAT 579 hqPGS_C10SLe0045H11.1-_SGN-E276952+ (103680 103498,102869 102556,101687 101606) ******************************************************************************** EST sequence 35 -strand 405 n (File: SGN-E224605-) 1 TAATATTTCG CGAATTACAA ATCATGAACA AAGTAGCTCC ATTGCCAATT TCCTGAGCCA 61 GTTTCCTCAA AATCCTTCGA TTCAGCAGCC ANCAACAACA ACAAGAAGAA GTATTGGGAT 121 CTCTTAATGA TGGGGTCGTC TTTCGACAAC CTTATAATCA AGTTACTGGC ATGAATTGGT 181 ACTCTTAAAG ATATAAAAAG GCAAAAAATA GTTAGCCCTG TAAAATCAAT CGATCAATCA 241 ATCATAGATA TATTATATAT GGATTTCGTT ATATTTTACT TTTAGTTAGA ATTAATATAT 301 AGAATATCTT CTATCTCACA TTAACAAATA AGAACATTTA TAACAAATAG TGAAACTAAA 361 CTATCTACCA TTAGATAGAC ATTTTGTTAA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 101917 to 100160): Exon 1 101307 100920 ( 388 n); cDNA 1 389 ( 389 n); score: 0.986 PPA cDNA 390 405 MATCH C10SLe0045H11.1- SGN-E224605- 0.986 388 0.958 C PGS_C10SLe0045H11.1-_SGN-E224605- (101307 100920) Alignment (genomic DNA sequence = upper lines): TAATATTTCG CGAATTACAA ATCATGAACA AAGTAGCTCC ATTGCCAATT TCCTGAGCCA 101248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATATTTCG CGAATTACAA ATCATGAACA AAGTAGCTCC ATTGCCAATT TCCTGAGCCA 60 GTTTCCTCAA AATCCTTCGA TTCAACA-AC AACAACAACA ACAAGAAGAA GTATTGGGAT 101189 |||||||||| |||||||||| |||| || | | |||||||| |||||||||| |||||||||| GTTTCCTCAA AATCCTTCGA TTCAGCAGCC ANCAACAACA ACAAGAAGAA GTATTGGGAT 120 CTCTTAATGA TGGGGTCGTC TTTCGACAAC CTTATAATCA AGTTACTGGC ATGAATTGGT 101129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTAATGA TGGGGTCGTC TTTCGACAAC CTTATAATCA AGTTACTGGC ATGAATTGGT 180 ACTCTTAAAG ATATAAAAAG GCAAAAAATA GTTAGCCCTG TAAAATCAAT CGATCAATCA 101069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTTAAAG ATATAAAAAG GCAAAAAATA GTTAGCCCTG TAAAATCAAT CGATCAATCA 240 ATCATAGATA TATTATATAT GGATTTCGTT ATATTTTACT TTTAGTTAGA ATTAATATAT 101009 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATAGATA TATTATATAT GGATTTCGTT ATATTTTACT TTTAGTTAGA ATTAATATAT 300 AGAATATCTT CTATCTCACA TTAACAAATA AGAACATTTA TAACAAATAG TGAAACTAAA 100949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATATCTT CTATCTCACA TTAACAAATA AGAACATTTA TAACAAATAG TGAAACTAAA 360 CTATCTACCA TTAGATAGAC ATTTTGTTA 100920 |||||||||| |||||||||| ||||||||| CTATCTACCA TTAGATAGAC ATTTTGTTA 389 hqPGS_C10SLe0045H11.1-_SGN-E224605- (101307 100920) ******************************************************************************** EST sequence 36 -strand 303 n (File: SGN-E224681-) 1 AAGAAGAAGT ATTGGGATCT CTTAATGATG GGGTCGTCTT TCGACAACCT TATAATCAAG 61 TTACTGGCAT GAATTGGTAC TCTTAAAGAT ATAAAAAGGC AAAAAATAGT TAGCCCTGTA 121 AAATCAATCG ATCAATCAAT CATAGATATA TTATATATGG ATTTCGTTAT ATTTTACTTT 181 TAGTTAGAAT TAATATATAG AATATCTTCT ATCTCACATT AACAAATAAG AACATTTATA 241 ACAAATAGTG AAACTAAACT ATCTACCATT AGATAGACAT TTTGTTAAAA AAAAAAAAAA 301 AAA Predicted gene structure (within gDNA segment 101816 to 100160): Exon 1 101206 100920 ( 287 n); cDNA 1 287 ( 287 n); score: 1.000 PPA cDNA 288 303 MATCH C10SLe0045H11.1- SGN-E224681- 1.000 287 0.947 C PGS_C10SLe0045H11.1-_SGN-E224681- (101206 100920) Alignment (genomic DNA sequence = upper lines): AAGAAGAAGT ATTGGGATCT CTTAATGATG GGGTCGTCTT TCGACAACCT TATAATCAAG 101147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGAAGT ATTGGGATCT CTTAATGATG GGGTCGTCTT TCGACAACCT TATAATCAAG 60 TTACTGGCAT GAATTGGTAC TCTTAAAGAT ATAAAAAGGC AAAAAATAGT TAGCCCTGTA 101087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTGGCAT GAATTGGTAC TCTTAAAGAT ATAAAAAGGC AAAAAATAGT TAGCCCTGTA 120 AAATCAATCG ATCAATCAAT CATAGATATA TTATATATGG ATTTCGTTAT ATTTTACTTT 101027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAATCG ATCAATCAAT CATAGATATA TTATATATGG ATTTCGTTAT ATTTTACTTT 180 TAGTTAGAAT TAATATATAG AATATCTTCT ATCTCACATT AACAAATAAG AACATTTATA 100967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTAGAAT TAATATATAG AATATCTTCT ATCTCACATT AACAAATAAG AACATTTATA 240 ACAAATAGTG AAACTAAACT ATCTACCATT AGATAGACAT TTTGTTA 100920 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACAAATAGTG AAACTAAACT ATCTACCATT AGATAGACAT TTTGTTA 287 hqPGS_C10SLe0045H11.1-_SGN-E224681- (101206 100920) ******************************************************************************** EST sequence 153 +strand 849 n (File: SGN-E260891+) 1 TGATTTTCTG TATTTTTGTA CTACTAACTC ACAGCACACA CACCATTTCT CTCTCTCTTC 61 TAAGCTGAAT TTTCGTATCA TACAATTTAC TGTTTCTTTC TTTTTTTTTT ATTATTATTT 121 TTATTATATA GTTTTATAAT CAGGTCGCTC TGATTAAATA TATTTGAAAA TTTTTATCAA 181 ATAATATTGT GGTCATGGAG AGTACCGATT CATCAACCGG CTCTCATCAT CAACCACAAT 241 TGCCACCTGG ATTTCGATTT CATCCAACTG ATGAAGAGCT TGTGGTTCAT TATCTTAAGA 301 AAAGAGTTGC CTCTGTTCCT CTTCCTGTTT CTATTATTGC TGAAGTTGAT CTTTACAAAT 361 TTGATCCTTG GGAACTACCT GCTAAGGCGA CATTTGGAGA ACAAGAATGG TATTTCTTCA 421 GTCCAAGAGA TAGAAAATAT CCTAACGGGG CGCGCCCAAA TAGGGCGGCA ACTTCCGGTT 481 ATTGGAAGGC TACCGGAACC GACAAGCCGG TGCTCACCGC CGGCGGGACC CAAAAAGTAG 541 GTGTCAAAAA GGCATTGGTG TTTTATGGTG GCAAACCACC CAAAGGGGTG AAGACAAATT 601 GGATTATGCA TGAATATAGG CTTGCTGATA ATAAAACAAA TAATAAGCCC CCTGGTTGTG 661 ACCTTGCCAA TAAAAAATCA CTAAGGCTAG ATGATTGGGT TTTATGTAGG ATTTACAAGA 721 AGAATAATAC TCAAAGGCCA ATTGATCATG AAAGAGATGA TTTGAATATT GATATGATGA 781 TGGGATCATC ATCAATTCAT CCATCATGTA TACCAAAATT CATGTCAATG CCAAATATAT 841 TTGGTCAAC Predicted gene structure (within gDNA segment 107621 to 99817): Exon 1 106095 106076 ( 20 n); cDNA 97 114 ( 18 n); score: 0.800 Intron 1 106075 105010 (1066 n); Pd: 0.969 (s: 0), Pa: 0.000 (s: 0) Exon 2 105009 104988 ( 22 n); cDNA 115 136 ( 22 n); score: 0.773 Intron 2 104987 104904 ( 84 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 104903 104852 ( 52 n); cDNA 137 187 ( 51 n); score: 0.644 Intron 3 104851 103692 (1160 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.76) Exon 4 103691 103498 ( 194 n); cDNA 188 381 ( 194 n); score: 0.753 Intron 4 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 5 102869 102586 ( 284 n); cDNA 382 665 ( 284 n); score: 0.824 Intron 5 102585 102370 ( 216 n); Pd: 0.000 (s: 0.76), Pa: 0.944 (s: 0) Exon 6 102369 102346 ( 24 n); cDNA 666 686 ( 21 n); score: 0.667 Intron 6 102345 101688 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0.92) Exon 7 101687 101625 ( 63 n); cDNA 687 749 ( 63 n); score: 0.873 MATCH C10SLe0045H11.1- SGN-E260891+ 0.790 659 0.776 C PGS_C10SLe0045H11.1-_SGN-E260891+ (106095 106076,105009 104988,104903 104852,103691 103498,102869 102586,102369 102346,101687 101625) Alignment (genomic DNA sequence = upper lines): TTGCTTTTTT CTTTAATTAG GTAAGTGCAA CATCCATAAA TATTTTTCAA GATATTTTTC 106036 || ||||||| ||| |||| TTTCTTTTTT TTTT-ATTA- .......... .......... .......... .......... 114 CGTAATTCAT TCACAATTTT TTTTAAAAGA ATTATTTAGT GTTTACCTGT TTACATTTAT 105976 .......... .......... .......... .......... .......... .......... 114 ATTGAAATTA ATTAAATTTA AAATCATAAT TAAGAGTGGA GAAATTTCAT TTATCAATAA 105916 .......... .......... .......... .......... .......... .......... 114 CCTAAATACT TAATTCTCCA ATGAAACTAA CTATAAGATT TTTCTCCCTA ATAATAGGTT 105856 .......... .......... .......... .......... .......... .......... 114 CATTTATTTT AGATTGGTCA TGTGAAGGAT ATGTGTTGAA ACAAATCCCT AAATTTCTTA 105796 .......... .......... .......... .......... .......... .......... 114 TTCTTGTTAA GTTTAAAAAT AAAAATGCTA AAAAAATTTT TTACAATGAA AGAATATTAT 105736 .......... .......... .......... .......... .......... .......... 114 AAAACTAATT AAATCCGTCC AAATTATATC ATACGTATCG CGAGGATTCA TCATAAATTG 105676 .......... .......... .......... .......... .......... .......... 114 ACTACTAGTC GTCGTATTTG TTGTCTCTAT CCGAGTTCAA GATCAACGAT ACTATATATA 105616 .......... .......... .......... .......... .......... .......... 114 AATACATCGA TAGAGACAAG TTGTTGTAAA AAAATTCCAA GTGTGACACT AGGCCAAATT 105556 .......... .......... .......... .......... .......... .......... 114 TGTCCAAAGA GTAGCCTAGA AATGCTTTCT TATCTTATTA TCTGTCTGTC GAGTCATGTC 105496 .......... .......... .......... .......... .......... .......... 114 AAACTTCTGT TGTAAAATTT AATCACTCCT AATTCGATAT TTCAAAATCG AGTTTTGCAA 105436 .......... .......... .......... .......... .......... .......... 114 ATTAAGAAAA TTTCATTGTA GGACGAGTTT CCTCTTTAAT TAAATGATTC ATATGAGCGC 105376 .......... .......... .......... .......... .......... .......... 114 CACGAATTCA ACTGAATATC AAATAAAATA CTGAATGATT GATATAGATC TCTTTATATA 105316 .......... .......... .......... .......... .......... .......... 114 TCTTGTGCAG GATAAAGTAG TTCTGCGTAT ATGCCCCTTT TACTCGATTG TCCACGTGTT 105256 .......... .......... .......... .......... .......... .......... 114 GGTACCAACT TGCATGCGTA TCGATTAATT ATATTGCCTA ATTTTCAGTT ATCAAGCTCT 105196 .......... .......... .......... .......... .......... .......... 114 AATTACATCA TTGTCATGTA TTAATCTAAT CACCTCTTCA ATTTATGCTA ATGACGACCT 105136 .......... .......... .......... .......... .......... .......... 114 CCACTTCTAA TTTAATATTA ACATATACAC TATTTATTTT TCCACTAACG ACTAATTTTT 105076 .......... .......... .......... .......... .......... .......... 114 TTAATTTTTT TTTGACAATA TTTATATAGT AATTTCTGCT AAGGTTAATT CTTAGTTTTT 105016 .......... .......... .......... .......... .......... .......... 114 ATCAACTCAT TTTTACTATA TATAATTAAT GTCCTTCTCA AAGCCTAATA ACGCCCATTT 104956 | || ||||| |||| || ||| ......TTAT TTTTATTATA TAGTTTTA.. .......... .......... .......... 136 TACGTTAAGT TAAACTGTTA GAATTGACGA AATTAGGATT AAATTTTAAA AAGAATCTTG 104896 |||| | .......... .......... .......... .......... .......... ..TAATCAGG 144 -AAATATGAT TTAAATATAT TCACAAAATT ATATCAGAAA AATAAATAAA AAATTTAAAA 104837 | ||| |||||||||| | ||| || ||||| || |||| TCGCTCTGA- TTAAATATAT TTGAAAATTT TTATCA-AAT AATAT..... .......... 187 TAAAATTGTG TAAGAAAAAA AGAATTGTTA TCGATTTTAA ATAAAAAAGA AAAAATAACA 104777 .......... .......... .......... .......... .......... .......... 187 TATATAAAAC GAAAAAAAAT ATATTTTTCT TAGTGAGTAG ATTTATCCAC ACTAGTAATT 104717 .......... .......... .......... .......... .......... .......... 187 GTGTGATTAT TGTAACATAT TATTCATTAG TCTAGGTACG AATTAATTGA CTCGAATATT 104657 .......... .......... .......... .......... .......... .......... 187 ATCGTCCTAA TAAAAAAAAT ATTCTTAATT TTGTTCTATT TTTTAATTAG CTTATTCCAA 104597 .......... .......... .......... .......... .......... .......... 187 AGTAAAAAAA ATCAAAGACA TGTTCTTATA TTTATGAACT TCTTAATTAA ACATTTATAA 104537 .......... .......... .......... .......... .......... .......... 187 TTACCACAAG AATCTCAAGA CATGTTTATA ATTAATAAAT TTAGATGTCT GTTTTTCTTT 104477 .......... .......... .......... .......... .......... .......... 187 CTAATTAAAT TAATATAATT TTACCTTTGA TAGCATATAT TTATAATTAC CATAGAATTC 104417 .......... .......... .......... .......... .......... .......... 187 AAAGCATGTT TACTGTTAGA TAAATTTAAA TATCTTCTAT ATTTTCTAAA ACCTTTGGCG 104357 .......... .......... .......... .......... .......... .......... 187 TCCAATTCGA TCAAAGTATG TCCACACAAT TCAATACTAC AAAAACTTTC TATATAAAGA 104297 .......... .......... .......... .......... .......... .......... 187 GAGATAATAG TCAAAATACA TCTGAAATGT TACGTTTTTT GTAAAATTTC TATTTAAATT 104237 .......... .......... .......... .......... .......... .......... 187 ATCACGTGCT CAATTTTTTT TACCTAAATC ATTATCAACT ATTTAACAAT ACACATCTCA 104177 .......... .......... .......... .......... .......... .......... 187 ATTATCAGTT ATTTTCTTTT TCTACTTGAA TACAGTAATA TTTCAGATAA AAAAAGAAAA 104117 .......... .......... .......... .......... .......... .......... 187 AGAGAAACAA TTGATAATTA TATTAACGCG TGATTTGATA AATAATTAAT GAGTTTATGT 104057 .......... .......... .......... .......... .......... .......... 187 ATAAAAAATG AACACCTCAT GGTTCAAAAA AAAATCTTGC AAAAATATAA TACTCTAGAT 103997 .......... .......... .......... .......... .......... .......... 187 ACTATTTTTT ACCATTAAAG TATATATTTC AATATATATA TATATATATA TATATATATA 103937 .......... .......... .......... .......... .......... .......... 187 TAAACAAAAA TATATGTAAT GGCATTACTG TAAATTCAGT GTTGCCTTAT ACCATATATA 103877 .......... .......... .......... .......... .......... .......... 187 AGTAAGTGTG GGGGCTAAAT TAACCAACTA AATTCCTTCT TGTTTATCAT TTTCTCTCTT 103817 .......... .......... .......... .......... .......... .......... 187 CCCAAAAAAA AATCCCAAAA TTTAATCATA ATACAATTCG AATTTATCAA CCTCGTACTA 103757 .......... .......... .......... .......... .......... .......... 187 CGTACATATT TTTGTTGGTA CGTAAAATAC TGAATTCAGG TCAACTCAAA CATCGTAAAT 103697 .......... .......... .......... .......... .......... .......... 187 TGTGATTTCT TTATGGAAAG TACGGATTCA TCAACCGGGA CACGTCATCA GCCTCAACTC 103637 | | | ||||| || ||| |||||| |||||||| | | |||||| || ||| | .....TGTGG TCATGGAGAG TACCGATTCA TCAACCGGCT CTCATCATCA ACCACAATTG 242 CCACCGGGGT TTCGATTCCA CCCGACGGAC GAAGAACTCA TCGTCCACTA CCTCAAAAAA 103577 ||||| || | ||||||| || || || || ||||| || | || || || || || ||| CCACCTGGAT TTCGATTTCA TCCAACTGAT GAAGAGCTTG TGGTTCATTA TCTTAAGAAA 302 CGAGTCGCCG GCGCTCCGAT TCCGGTGGAT ATTATTGGTG AAATTGATCT TTATAAGTTT 103517 |||| ||| | ||| | ||| || | ||||||| || || ||||||| ||| || ||| AGAGTTGCCT CTGTTCCTCT TCCTGTTTCT ATTATTGCTG AAGTTGATCT TTACAAATTT 362 GATCCATGGG AACTCCCTGG TACTATTTTC ACCACTATAC TATATTTTCT TGCCCTATAA 103457 ||||| |||| |||| |||| GATCCTTGGG AACTACCTG. .......... .......... .......... .......... 381 CTTATATATA GGGGAAAAAG ATCGGAGTCA GCGATGAACA ATTATTGTGT CTAAATTAAA 103397 .......... .......... .......... .......... .......... .......... 381 TTTTAAATAT GCAATAGATT GGTGACGAAT TTCGTTGCTA ATTAATTTTT TAGTGATAAA 103337 .......... .......... .......... .......... .......... .......... 381 TTAATATTTT TCCCCTTTTT AATCTTCATG TTTTTTATCA CAAAGTTTTC TATGACCAAC 103277 .......... .......... .......... .......... .......... .......... 381 TTATAAAGAT TTGAACTCGA TCAATTTTTT TTTTAGAATG AATGAACTTA TGTTATATAT 103217 .......... .......... .......... .......... .......... .......... 381 AGTGATATTT TAAATGCTTT TTTATATTTT CAAAAGATAT CCACGATAAC GTGTAAAAAG 103157 .......... .......... .......... .......... .......... .......... 381 TGAATTTGCA AAAAAAAAAA TGTAGTACCT TTTATTTAAT TTTATTGTAG ATAATTTAGA 103097 .......... .......... .......... .......... .......... .......... 381 TTTTAATTTT GAATTTGTTT AATTTAAATT CTGAATCGTA TAATATTTAT TTAATTTCTA 103037 .......... .......... .......... .......... .......... .......... 381 TTTTTTGAGT TTTTTTTTGG AGGGTGCTTA AAAAGTAGTA TTCACAAATA TAAAGTAGTG 102977 .......... .......... .......... .......... .......... .......... 381 GACAAACATA AAGTAGTGGA CCCATAATTT ATTTTTTTAA AAATTATATT AAAACTATTT 102917 .......... .......... .......... .......... .......... .......... 381 GTTAAGTTTA AATTCTGAAT TATCTTCTTA TCATGTGTTT AACGCAGCTA AGGCAATATT 102857 ||| |||| | ||| .......... .......... .......... .......... .......CTA AGGCGACATT 394 CGGAGAGCAA GAATGGTTCT TTTTTAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGAG 102797 ||||| ||| ||||||| | | || ||||| |||||||||| |||||||||| |||||||| | TGGAGAACAA GAATGGTATT TCTTCAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGCG 454 GCCAAATCGG GCTGCAACAT CGGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTTTT 102737 |||||| || || ||||| | | |||||||| |||||||||| |||||||||| ||||||| | CCCAAATAGG GCGGCAACTT CCGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTGCT 514 TACTTCCGGT GGAACACAAA AGGTTGGGGT AAAAAAGGCG CTCGTTTTTT ACGGCGGTAA 102677 || |||| || || |||| | || || || |||||||| | || |||| | || || || CACCGCCGGC GGGACCCAAA AAGTAGGTGT CAAAAAGGCA TTGGTGTTTT ATGGTGGCAA 574 ACCACCAAAA GGGGTAAAAA CTAATTGGAT CATGCATGAA TACAGAGTTG TAGAAAATAA 102617 |||||| ||| ||||| || | | |||||||| ||||||||| || || ||| || ||||| ACCACCCAAA GGGGTGAAGA CAAATTGGAT TATGCATGAA TATAGGCTTG CTGATAATAA 634 AACAAATAAC AAGCCACTTG GTTGTGATAA TATTGTTGCC AACAAAAAAG GATCTTTGAG 102557 ||||||||| ||||| | || ||||||| | AACAAATAAT AAGCCCCCTG GTTGTGACCT T......... .......... .......... 665 GGTAAGTCCT AAATTTTGCA TCGAAACTAA TTTCTCTATC GTATCAGATA GGGATAAGAT 102497 .......... .......... .......... .......... .......... .......... 665 ATACGTATAC TCTAATCTCC TTGAACCCCA CAAGTACTAT ACTAGATATG TTGTTGTTGT 102437 .......... .......... .......... .......... .......... .......... 665 AGATGACTTG ATTCAACTTT CAAATTTTTG ATGAAAATGT TTAAGTTATA TATACATATA 102377 .......... .......... .......... .......... .......... .......... 665 TATATAGGCG GAGCTAAAAA TTTCGATAAG GGGGTTTAAA TCTGAAAAAA TGGATATACG 102317 || | |||||| || |||| | .......GC- CAA-TAAAAA -ATCACTAAG G......... .......... .......... 686 AAATAGCCGA AAGAGGTTCG ACATAGATTA TTTTAACCAT ATAAAAATAA TACAATTTTC 102257 .......... .......... .......... .......... .......... .......... 686 ATATATATAT ACGCGTGGTT AATATGAGGA ATATTTTATA CTATTAATGT ACTTTAACCA 102197 .......... .......... .......... .......... .......... .......... 686 GGGGCGGCTC TAGAGTTGAT GAACCCTCTC AGCGAAAATT TACGTTGTAT ATTTAAGGTA 102137 .......... .......... .......... .......... .......... .......... 686 CCTTTTAATA ATTTTTGTAT TTATATATTA ATTTTGAACC TCTTGAATAT AAGATTAGAC 102077 .......... .......... .......... .......... .......... .......... 686 GTTGACTTAG TGGTTTCAGG GGTTCAAATC ACTATTCTTT TTTTCCTAAC CCCCTTAATG 102017 .......... .......... .......... .......... .......... .......... 686 AAAATCCTGA ATCGGCCACT AACTTTAACT GGTTATAGAA GGTTAATCTT ACTAGAAAAA 101957 .......... .......... .......... .......... .......... .......... 686 AGCATGAAAT TCTAACCGAC AAAGATGTAG TCGCCCAGTT AGATAAGACG TTTAAATTGG 101897 .......... .......... .......... .......... .......... .......... 686 GACGGATAGA GTTACTTTAT TTTTCACTGT CATATGTTAC TATATATTGA CACTTCACTT 101837 .......... .......... .......... .......... .......... .......... 686 AAAGAGTTAT CATATCGATA TTTTTACTAT TAGTGTACAT AACACAAACT CGAATAAATT 101777 .......... .......... .......... .......... .......... .......... 686 CAATGTTTCA TTAGCTAGTT AATTAGTCTA ACTTTTTTAA AAAAAAATAT TTTTCTTACT 101717 .......... .......... .......... .......... .......... .......... 686 CCACACTATT TTATTTTATT TTTTTGCAGC TAGATGATTG GGTTTTATGT CGAATTTACA 101657 | |||||||||| |||||||||| | ||||||| .......... .......... .........C TAGATGATTG GGTTTTATGT AGGATTTACA 717 AGAAGAATAA CACACAAAGG TCCATAGATG AT 101625 |||||||||| || |||||| | || ||| || AGAAGAATAA TACTCAAAGG CCAATTGATC AT 749 hqPGS_C10SLe0045H11.1-_SGN-E260891+ (105009 104988,104903 104852,103691 103498,102869 102586,102369 102346,101687 101625) ******************************************************************************** EST sequence 84 +strand 638 n (File: SGN-E204609+) 1 ACCGATTCAT CAACCGGCTC TCATCATCAA CCACAATTGC CACCTGGATT TCGATTTCAT 61 CCAACTGATG AAGAGCTTGT GGTTCATTAT CTTAAGAAAA GAGTTGCCTC TGTTCCTCTT 121 CCTGTTTCTA TTATTGCTGA AGTTGATCTT TACAAATTTG ATCCTTGGGA ACTACCTGCT 181 AAGGCGACAT TTGGAGAACA AGAATGGTAT TTCTTCAGTC CAAGAGATAG AAAATATCCT 241 AACGGGGCGC GCCCAAATAG GGCGGCAACT TCCGGTTATT GGAAGGCTAC CGGAACCGAC 301 AAGCCGGTGC TCACCGCCGG CGGGACCCAA AAAGTAGGTG TCAAAAAGGC ATTGGTGTTT 361 TATGGTGGCA AACCACCCAA AGGGGTGAAG ACAAATTGGA TTATGCATGA ATATAGGCTT 421 GCTGATAATA AAACAAATAA TAAGCCCCCT GGTTGTGACC TTGCCAATAA AAAATCACTA 481 AGGCTAGATG ATTGGGTTTT ATGTAGGATT TACAAGAAGA ATAATACTCA AAGGCCAATT 541 GATCATGAAA GAGATGATTT GAATATTGAT ATGATGATGG GATCATCATC AATTCATCCA 601 TCATGTATAC CAAATTCAAT GTCAATGCCA AATATATT Predicted gene structure (within gDNA segment 105591 to 99897): Exon 1 103675 103498 ( 178 n); cDNA 1 178 ( 178 n); score: 0.758 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 2 102869 102586 ( 284 n); cDNA 179 462 ( 284 n); score: 0.824 Intron 2 102585 102370 ( 216 n); Pd: 0.000 (s: 0.76), Pa: 0.944 (s: 0) Exon 3 102369 102346 ( 24 n); cDNA 463 483 ( 21 n); score: 0.667 Intron 3 102345 101688 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0.92) Exon 4 101687 101625 ( 63 n); cDNA 484 546 ( 63 n); score: 0.873 MATCH C10SLe0045H11.1- SGN-E204609+ 0.808 549 0.861 C PGS_C10SLe0045H11.1-_SGN-E204609+ (103675 103498,102869 102586,102369 102346,101687 101625) Alignment (genomic DNA sequence = upper lines): ACGGATTCAT CAACCGGGAC ACGTCATCAG CCTCAACTCC CACCGGGGTT TCGATTCCAC 103616 || ||||||| ||||||| | | |||||| || ||| | | |||| || || |||||| || ACCGATTCAT CAACCGGCTC TCATCATCAA CCACAATTGC CACCTGGATT TCGATTTCAT 60 CCGACGGACG AAGAACTCAT CGTCCACTAC CTCAAAAAAC GAGTCGCCGG CGCTCCGATT 103556 || || || | |||| || | || || || || || ||| |||| ||| | ||| || CCAACTGATG AAGAGCTTGT GGTTCATTAT CTTAAGAAAA GAGTTGCCTC TGTTCCTCTT 120 CCGGTGGATA TTATTGGTGA AATTGATCTT TATAAGTTTG ATCCATGGGA ACTCCCTGGT 103496 || || || |||||| ||| | |||||||| || || |||| |||| ||||| ||| |||| CCTGTTTCTA TTATTGCTGA AGTTGATCTT TACAAATTTG ATCCTTGGGA ACTACCTG.. 178 ACTATTTTCA CCACTATACT ATATTTTCTT GCCCTATAAC TTATATATAG GGGAAAAAGA 103436 .......... .......... .......... .......... .......... .......... 178 TCGGAGTCAG CGATGAACAA TTATTGTGTC TAAATTAAAT TTTAAATATG CAATAGATTG 103376 .......... .......... .......... .......... .......... .......... 178 GTGACGAATT TCGTTGCTAA TTAATTTTTT AGTGATAAAT TAATATTTTT CCCCTTTTTA 103316 .......... .......... .......... .......... .......... .......... 178 ATCTTCATGT TTTTTATCAC AAAGTTTTCT ATGACCAACT TATAAAGATT TGAACTCGAT 103256 .......... .......... .......... .......... .......... .......... 178 CAATTTTTTT TTTAGAATGA ATGAACTTAT GTTATATATA GTGATATTTT AAATGCTTTT 103196 .......... .......... .......... .......... .......... .......... 178 TTATATTTTC AAAAGATATC CACGATAACG TGTAAAAAGT GAATTTGCAA AAAAAAAAAT 103136 .......... .......... .......... .......... .......... .......... 178 GTAGTACCTT TTATTTAATT TTATTGTAGA TAATTTAGAT TTTAATTTTG AATTTGTTTA 103076 .......... .......... .......... .......... .......... .......... 178 ATTTAAATTC TGAATCGTAT AATATTTATT TAATTTCTAT TTTTTGAGTT TTTTTTTGGA 103016 .......... .......... .......... .......... .......... .......... 178 GGGTGCTTAA AAAGTAGTAT TCACAAATAT AAAGTAGTGG ACAAACATAA AGTAGTGGAC 102956 .......... .......... .......... .......... .......... .......... 178 CCATAATTTA TTTTTTTAAA AATTATATTA AAACTATTTG TTAAGTTTAA ATTCTGAATT 102896 .......... .......... .......... .......... .......... .......... 178 ATCTTCTTAT CATGTGTTTA ACGCAGCTAA GGCAATATTC GGAGAGCAAG AATGGTTCTT 102836 |||| ||| | ||| ||||| |||| |||||| || .......... .......... ......CTAA GGCGACATTT GGAGAACAAG AATGGTATTT 212 TTTTAGTCCA AGAGATAGAA AATATCCTAA CGGGGCGAGG CCAAATCGGG CTGCAACATC 102776 || |||||| |||||||||| |||||||||| ||||||| | |||||| ||| | ||||| || CTTCAGTCCA AGAGATAGAA AATATCCTAA CGGGGCGCGC CCAAATAGGG CGGCAACTTC 272 GGGTTATTGG AAGGCTACCG GAACCGACAA GCCGGTTTTT ACTTCCGGTG GAACACAAAA 102716 ||||||||| |||||||||| |||||||||| |||||| | || |||| | | || ||||| CGGTTATTGG AAGGCTACCG GAACCGACAA GCCGGTGCTC ACCGCCGGCG GGACCCAAAA 332 GGTTGGGGTA AAAAAGGCGC TCGTTTTTTA CGGCGGTAAA CCACCAAAAG GGGTAAAAAC 102656 || || || |||||||| | || ||||| || || ||| ||||| |||| |||| || || AGTAGGTGTC AAAAAGGCAT TGGTGTTTTA TGGTGGCAAA CCACCCAAAG GGGTGAAGAC 392 TAATTGGATC ATGCATGAAT ACAGAGTTGT AGAAAATAAA ACAAATAACA AGCCACTTGG 102596 |||||||| |||||||||| | || ||| || |||||| |||||||| | |||| | ||| AAATTGGATT ATGCATGAAT ATAGGCTTGC TGATAATAAA ACAAATAATA AGCCCCCTGG 452 TTGTGATAAT ATTGTTGCCA ACAAAAAAGG ATCTTTGAGG GTAAGTCCTA AATTTTGCAT 102536 |||||| | TTGTGACCTT .......... .......... .......... .......... .......... 462 CGAAACTAAT TTCTCTATCG TATCAGATAG GGATAAGATA TACGTATACT CTAATCTCCT 102476 .......... .......... .......... .......... .......... .......... 462 TGAACCCCAC AAGTACTATA CTAGATATGT TGTTGTTGTA GATGACTTGA TTCAACTTTC 102416 .......... .......... .......... .......... .......... .......... 462 AAATTTTTGA TGAAAATGTT TAAGTTATAT ATACATATAT ATATAGGCGG AGCTAAAAAT 102356 || | |||||| .......... .......... .......... .......... ......GC-C A-ATAAAAA- 473 TTCGATAAGG GGGTTTAAAT CTGAAAAAAT GGATATACGA AATAGCCGAA AGAGGTTCGA 102296 || ||||| ATCACTAAGG .......... .......... .......... .......... .......... 483 CATAGATTAT TTTAACCATA TAAAAATAAT ACAATTTTCA TATATATATA CGCGTGGTTA 102236 .......... .......... .......... .......... .......... .......... 483 ATATGAGGAA TATTTTATAC TATTAATGTA CTTTAACCAG GGGCGGCTCT AGAGTTGATG 102176 .......... .......... .......... .......... .......... .......... 483 AACCCTCTCA GCGAAAATTT ACGTTGTATA TTTAAGGTAC CTTTTAATAA TTTTTGTATT 102116 .......... .......... .......... .......... .......... .......... 483 TATATATTAA TTTTGAACCT CTTGAATATA AGATTAGACG TTGACTTAGT GGTTTCAGGG 102056 .......... .......... .......... .......... .......... .......... 483 GTTCAAATCA CTATTCTTTT TTTCCTAACC CCCTTAATGA AAATCCTGAA TCGGCCACTA 101996 .......... .......... .......... .......... .......... .......... 483 ACTTTAACTG GTTATAGAAG GTTAATCTTA CTAGAAAAAA GCATGAAATT CTAACCGACA 101936 .......... .......... .......... .......... .......... .......... 483 AAGATGTAGT CGCCCAGTTA GATAAGACGT TTAAATTGGG ACGGATAGAG TTACTTTATT 101876 .......... .......... .......... .......... .......... .......... 483 TTTCACTGTC ATATGTTACT ATATATTGAC ACTTCACTTA AAGAGTTATC ATATCGATAT 101816 .......... .......... .......... .......... .......... .......... 483 TTTTACTATT AGTGTACATA ACACAAACTC GAATAAATTC AATGTTTCAT TAGCTAGTTA 101756 .......... .......... .......... .......... .......... .......... 483 ATTAGTCTAA CTTTTTTAAA AAAAAATATT TTTCTTACTC CACACTATTT TATTTTATTT 101696 .......... .......... .......... .......... .......... .......... 483 TTTTGCAGCT AGATGATTGG GTTTTATGTC GAATTTACAA GAAGAATAAC ACACAAAGGT 101636 || |||||||||| ||||||||| | |||||||| ||||||||| || |||||| ........CT AGATGATTGG GTTTTATGTA GGATTTACAA GAAGAATAAT ACTCAAAGGC 535 CCATAGATGA T 101625 | || ||| | | CAATTGATCA T 546 hqPGS_C10SLe0045H11.1-_SGN-E204609+ (103675 103498,102869 102586,102369 102346,101687 101625) ******************************************************************************** EST sequence 76 +strand 718 n (File: SGN-E213435+) 1 CGATTCATCA ACCGGCTCTC ATCATCAACC ACAATTGCCA CCTGGATTTC GATTTCATCC 61 AACTGATGAA GAGCTTGTGG TTCATTATCT TAAGAAAAGA GTTGCCTCTG TTCCTCTTCC 121 TGTTTCTATT ATTGCTGAAG TTGATCTTTA CAAATTTGAT CCTTGGGAAC TACCTGCTAA 181 GGCGACATTT GGAGAACAAG AATGGTATTT CTTCAGTCCA AGAGATAGAA AATATCCTAA 241 CGGGGCGCGC CCAAATAGGG CGGCAACTTC CGGTTATTGG AAGGCTACCG GAACCGACAA 301 GCCGGTGCTC ACCGCCGGCG GGACCCAAAA AGTAGGTGTC AAAAAGGCAT TGGTGTTTTA 361 TGGTGGCAAA CCACCCAAAG GGGTGAAGAC AAATTGGATT ATGCATGAAT ATAGGCTTGC 421 TGATAATAAA ACAAATAATA AGCCCCCTGG TTGTGACCTT GCCAATAAAA AATCACTAAG 481 GCTAGATGAT TGGGTTTTAT GTAGGATTTA CAAGAAGAAT AATACTCAAA GGCCAATTGA 541 TCATGAAAGA GATGATTTGA ATATTGATAT GATGATGGGA TCATCATCAA TTCATCCATC 601 ATGTATACCA AATTCAATGT CAATGCCAAA TATATTTGGT CAACCAAAAA TACCACAACT 661 AAAATCTTCA AATTTTGGCA CTACATTAAT TCATGATCAA AATGACCAAA ATTTATAT Predicted gene structure (within gDNA segment 105571 to 99077): Exon 1 103672 103498 ( 175 n); cDNA 2 176 ( 175 n); score: 0.760 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 2 102869 102586 ( 284 n); cDNA 177 460 ( 284 n); score: 0.824 Intron 2 102585 102370 ( 216 n); Pd: 0.000 (s: 0.76), Pa: 0.944 (s: 0) Exon 3 102369 102346 ( 24 n); cDNA 461 481 ( 21 n); score: 0.667 Intron 3 102345 101688 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0.92) Exon 4 101687 101625 ( 63 n); cDNA 482 544 ( 63 n); score: 0.873 MATCH C10SLe0045H11.1- SGN-E213435+ 0.808 546 0.760 C PGS_C10SLe0045H11.1-_SGN-E213435+ (103672 103498,102869 102586,102369 102346,101687 101625) Alignment (genomic DNA sequence = upper lines): GATTCATCAA CCGGGACACG TCATCAGCCT CAACTCCCAC CGGGGTTTCG ATTCCACCCG 103613 |||||||||| |||| | | |||||| || ||| | |||| | || ||||| ||| || || GATTCATCAA CCGGCTCTCA TCATCAACCA CAATTGCCAC CTGGATTTCG ATTTCATCCA 61 ACGGACGAAG AACTCATCGT CCACTACCTC AAAAAACGAG TCGCCGGCGC TCCGATTCCG 103553 || || |||| | || | || || || || || ||| ||| | ||| | ||| |||| ACTGATGAAG AGCTTGTGGT TCATTATCTT AAGAAAAGAG TTGCCTCTGT TCCTCTTCCT 121 GTGGATATTA TTGGTGAAAT TGATCTTTAT AAGTTTGATC CATGGGAACT CCCTGGTACT 103493 || ||||| ||| |||| | ||||||||| || ||||||| | |||||||| |||| GTTTCTATTA TTGCTGAAGT TGATCTTTAC AAATTTGATC CTTGGGAACT ACCTG..... 176 ATTTTCACCA CTATACTATA TTTTCTTGCC CTATAACTTA TATATAGGGG AAAAAGATCG 103433 .......... .......... .......... .......... .......... .......... 176 GAGTCAGCGA TGAACAATTA TTGTGTCTAA ATTAAATTTT AAATATGCAA TAGATTGGTG 103373 .......... .......... .......... .......... .......... .......... 176 ACGAATTTCG TTGCTAATTA ATTTTTTAGT GATAAATTAA TATTTTTCCC CTTTTTAATC 103313 .......... .......... .......... .......... .......... .......... 176 TTCATGTTTT TTATCACAAA GTTTTCTATG ACCAACTTAT AAAGATTTGA ACTCGATCAA 103253 .......... .......... .......... .......... .......... .......... 176 TTTTTTTTTT AGAATGAATG AACTTATGTT ATATATAGTG ATATTTTAAA TGCTTTTTTA 103193 .......... .......... .......... .......... .......... .......... 176 TATTTTCAAA AGATATCCAC GATAACGTGT AAAAAGTGAA TTTGCAAAAA AAAAAATGTA 103133 .......... .......... .......... .......... .......... .......... 176 GTACCTTTTA TTTAATTTTA TTGTAGATAA TTTAGATTTT AATTTTGAAT TTGTTTAATT 103073 .......... .......... .......... .......... .......... .......... 176 TAAATTCTGA ATCGTATAAT ATTTATTTAA TTTCTATTTT TTGAGTTTTT TTTTGGAGGG 103013 .......... .......... .......... .......... .......... .......... 176 TGCTTAAAAA GTAGTATTCA CAAATATAAA GTAGTGGACA AACATAAAGT AGTGGACCCA 102953 .......... .......... .......... .......... .......... .......... 176 TAATTTATTT TTTTAAAAAT TATATTAAAA CTATTTGTTA AGTTTAAATT CTGAATTATC 102893 .......... .......... .......... .......... .......... .......... 176 TTCTTATCAT GTGTTTAACG CAGCTAAGGC AATATTCGGA GAGCAAGAAT GGTTCTTTTT 102833 ||||||| | ||| ||| || ||||||| ||| || || .......... .......... ...CTAAGGC GACATTTGGA GAACAAGAAT GGTATTTCTT 213 TAGTCCAAGA GATAGAAAAT ATCCTAACGG GGCGAGGCCA AATCGGGCTG CAACATCGGG 102773 ||||||||| |||||||||| |||||||||| |||| | ||| ||| |||| | |||| || || CAGTCCAAGA GATAGAAAAT ATCCTAACGG GGCGCGCCCA AATAGGGCGG CAACTTCCGG 273 TTATTGGAAG GCTACCGGAA CCGACAAGCC GGTTTTTACT TCCGGTGGAA CACAAAAGGT 102713 |||||||||| |||||||||| |||||||||| ||| | || |||| || | | ||||| || TTATTGGAAG GCTACCGGAA CCGACAAGCC GGTGCTCACC GCCGGCGGGA CCCAAAAAGT 333 TGGGGTAAAA AAGGCGCTCG TTTTTTACGG CGGTAAACCA CCAAAAGGGG TAAAAACTAA 102653 || || ||| ||||| | | | ||||| || || |||||| || ||||||| | || || || AGGTGTCAAA AAGGCATTGG TGTTTTATGG TGGCAAACCA CCCAAAGGGG TGAAGACAAA 393 TTGGATCATG CATGAATACA GAGTTGTAGA AAATAAAACA AATAACAAGC CACTTGGTTG 102593 |||||| ||| |||||||| | | ||| || ||||||||| ||||| |||| | | |||||| TTGGATTATG CATGAATATA GGCTTGCTGA TAATAAAACA AATAATAAGC CCCCTGGTTG 453 TGATAATATT GTTGCCAACA AAAAAGGATC TTTGAGGGTA AGTCCTAAAT TTTGCATCGA 102533 ||| | TGACCTT... .......... .......... .......... .......... .......... 460 AACTAATTTC TCTATCGTAT CAGATAGGGA TAAGATATAC GTATACTCTA ATCTCCTTGA 102473 .......... .......... .......... .......... .......... .......... 460 ACCCCACAAG TACTATACTA GATATGTTGT TGTTGTAGAT GACTTGATTC AACTTTCAAA 102413 .......... .......... .......... .......... .......... .......... 460 TTTTTGATGA AAATGTTTAA GTTATATATA CATATATATA TAGGCGGAGC TAAAAATTTC 102353 || | |||||| || .......... .......... .......... .......... ...GC-CA-A TAAAAA-ATC 474 GATAAGGGGG TTTAAATCTG AAAAAATGGA TATACGAAAT AGCCGAAAGA GGTTCGACAT 102293 ||||| ACTAAGG... .......... .......... .......... .......... .......... 481 AGATTATTTT AACCATATAA AAATAATACA ATTTTCATAT ATATATACGC GTGGTTAATA 102233 .......... .......... .......... .......... .......... .......... 481 TGAGGAATAT TTTATACTAT TAATGTACTT TAACCAGGGG CGGCTCTAGA GTTGATGAAC 102173 .......... .......... .......... .......... .......... .......... 481 CCTCTCAGCG AAAATTTACG TTGTATATTT AAGGTACCTT TTAATAATTT TTGTATTTAT 102113 .......... .......... .......... .......... .......... .......... 481 ATATTAATTT TGAACCTCTT GAATATAAGA TTAGACGTTG ACTTAGTGGT TTCAGGGGTT 102053 .......... .......... .......... .......... .......... .......... 481 CAAATCACTA TTCTTTTTTT CCTAACCCCC TTAATGAAAA TCCTGAATCG GCCACTAACT 101993 .......... .......... .......... .......... .......... .......... 481 TTAACTGGTT ATAGAAGGTT AATCTTACTA GAAAAAAGCA TGAAATTCTA ACCGACAAAG 101933 .......... .......... .......... .......... .......... .......... 481 ATGTAGTCGC CCAGTTAGAT AAGACGTTTA AATTGGGACG GATAGAGTTA CTTTATTTTT 101873 .......... .......... .......... .......... .......... .......... 481 CACTGTCATA TGTTACTATA TATTGACACT TCACTTAAAG AGTTATCATA TCGATATTTT 101813 .......... .......... .......... .......... .......... .......... 481 TACTATTAGT GTACATAACA CAAACTCGAA TAAATTCAAT GTTTCATTAG CTAGTTAATT 101753 .......... .......... .......... .......... .......... .......... 481 AGTCTAACTT TTTTAAAAAA AAATATTTTT CTTACTCCAC ACTATTTTAT TTTATTTTTT 101693 .......... .......... .......... .......... .......... .......... 481 TGCAGCTAGA TGATTGGGTT TTATGTCGAA TTTACAAGAA GAATAACACA CAAAGGTCCA 101633 ||||| |||||||||| |||||| | | |||||||||| |||||| || |||||| | | .....CTAGA TGATTGGGTT TTATGTAGGA TTTACAAGAA GAATAATACT CAAAGGCCAA 536 TAGATGAT 101625 | ||| || TTGATCAT 544 hqPGS_C10SLe0045H11.1-_SGN-E213435+ (103672 103498,102869 102586,102369 102346,101687 101625) ******************************************************************************** EST sequence 102 +strand 625 n (File: SGN-E375922+) 1 CGATTCATCA ACCGGCTCTC ATCATCAACC ACAATTGCCA CCTGGATTTC GATTTCATCC 61 AACTGATGAA GAGCTTGTGG TTCATTATCT TAAGAAAAGA GTTGCCTCTG TTCCTCTTCC 121 TGTTTCTATT ATTGCTGAAG TTGATCTTTA CAAATTTGAT CCTTGGGAAC TACCTGCTAA 181 GGCGACATTT GGAGAACAAG AATGGTATTT CTTCAGTCCA AGAGATAGAA AATATCCTAA 241 CGGGGCGCGC CCAAATAGGG CGGCAACTTC CGGTTATTGG AAGGCTACCG GAACCGACAA 301 GCCGGTGCTC ACCGCCGGCG GGACCCAAAA AGTAGGTGTC AAAAAGGCAT TGGTGTTTTA 361 TGGTGGCAAA CCACCCAAAG GGGTGAAGAC AAATTGGATT ATGCATGAAT ATAGGCTTGC 421 TGATAATAAA ACAAATAATA AGCCCCCTGG TTGTGACCTT GCCAATAAAA AATCACTAAG 481 GCTAGATGAT TGGGTTTTAT GTAGGATTTA CAAGAAGAAT AATACTCAAA GGCCAATTGA 541 TCATGAAAGA GATGATTTGA ATATTGATAT GATGATGGGA TCATCATCAA TTCATCCATC 601 ATGTATACCA AATTCAATGT CAATG Predicted gene structure (within gDNA segment 105571 to 100007): Exon 1 103672 103498 ( 175 n); cDNA 2 176 ( 175 n); score: 0.760 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 2 102869 102586 ( 284 n); cDNA 177 460 ( 284 n); score: 0.824 Intron 2 102585 102370 ( 216 n); Pd: 0.000 (s: 0.76), Pa: 0.944 (s: 0) Exon 3 102369 102346 ( 24 n); cDNA 461 481 ( 21 n); score: 0.667 Intron 3 102345 101688 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0.92) Exon 4 101687 101625 ( 63 n); cDNA 482 544 ( 63 n); score: 0.873 MATCH C10SLe0045H11.1- SGN-E375922+ 0.808 546 0.874 C PGS_C10SLe0045H11.1-_SGN-E375922+ (103672 103498,102869 102586,102369 102346,101687 101625) Alignment (genomic DNA sequence = upper lines): GATTCATCAA CCGGGACACG TCATCAGCCT CAACTCCCAC CGGGGTTTCG ATTCCACCCG 103613 |||||||||| |||| | | |||||| || ||| | |||| | || ||||| ||| || || GATTCATCAA CCGGCTCTCA TCATCAACCA CAATTGCCAC CTGGATTTCG ATTTCATCCA 61 ACGGACGAAG AACTCATCGT CCACTACCTC AAAAAACGAG TCGCCGGCGC TCCGATTCCG 103553 || || |||| | || | || || || || || ||| ||| | ||| | ||| |||| ACTGATGAAG AGCTTGTGGT TCATTATCTT AAGAAAAGAG TTGCCTCTGT TCCTCTTCCT 121 GTGGATATTA TTGGTGAAAT TGATCTTTAT AAGTTTGATC CATGGGAACT CCCTGGTACT 103493 || ||||| ||| |||| | ||||||||| || ||||||| | |||||||| |||| GTTTCTATTA TTGCTGAAGT TGATCTTTAC AAATTTGATC CTTGGGAACT ACCTG..... 176 ATTTTCACCA CTATACTATA TTTTCTTGCC CTATAACTTA TATATAGGGG AAAAAGATCG 103433 .......... .......... .......... .......... .......... .......... 176 GAGTCAGCGA TGAACAATTA TTGTGTCTAA ATTAAATTTT AAATATGCAA TAGATTGGTG 103373 .......... .......... .......... .......... .......... .......... 176 ACGAATTTCG TTGCTAATTA ATTTTTTAGT GATAAATTAA TATTTTTCCC CTTTTTAATC 103313 .......... .......... .......... .......... .......... .......... 176 TTCATGTTTT TTATCACAAA GTTTTCTATG ACCAACTTAT AAAGATTTGA ACTCGATCAA 103253 .......... .......... .......... .......... .......... .......... 176 TTTTTTTTTT AGAATGAATG AACTTATGTT ATATATAGTG ATATTTTAAA TGCTTTTTTA 103193 .......... .......... .......... .......... .......... .......... 176 TATTTTCAAA AGATATCCAC GATAACGTGT AAAAAGTGAA TTTGCAAAAA AAAAAATGTA 103133 .......... .......... .......... .......... .......... .......... 176 GTACCTTTTA TTTAATTTTA TTGTAGATAA TTTAGATTTT AATTTTGAAT TTGTTTAATT 103073 .......... .......... .......... .......... .......... .......... 176 TAAATTCTGA ATCGTATAAT ATTTATTTAA TTTCTATTTT TTGAGTTTTT TTTTGGAGGG 103013 .......... .......... .......... .......... .......... .......... 176 TGCTTAAAAA GTAGTATTCA CAAATATAAA GTAGTGGACA AACATAAAGT AGTGGACCCA 102953 .......... .......... .......... .......... .......... .......... 176 TAATTTATTT TTTTAAAAAT TATATTAAAA CTATTTGTTA AGTTTAAATT CTGAATTATC 102893 .......... .......... .......... .......... .......... .......... 176 TTCTTATCAT GTGTTTAACG CAGCTAAGGC AATATTCGGA GAGCAAGAAT GGTTCTTTTT 102833 ||||||| | ||| ||| || ||||||| ||| || || .......... .......... ...CTAAGGC GACATTTGGA GAACAAGAAT GGTATTTCTT 213 TAGTCCAAGA GATAGAAAAT ATCCTAACGG GGCGAGGCCA AATCGGGCTG CAACATCGGG 102773 ||||||||| |||||||||| |||||||||| |||| | ||| ||| |||| | |||| || || CAGTCCAAGA GATAGAAAAT ATCCTAACGG GGCGCGCCCA AATAGGGCGG CAACTTCCGG 273 TTATTGGAAG GCTACCGGAA CCGACAAGCC GGTTTTTACT TCCGGTGGAA CACAAAAGGT 102713 |||||||||| |||||||||| |||||||||| ||| | || |||| || | | ||||| || TTATTGGAAG GCTACCGGAA CCGACAAGCC GGTGCTCACC GCCGGCGGGA CCCAAAAAGT 333 TGGGGTAAAA AAGGCGCTCG TTTTTTACGG CGGTAAACCA CCAAAAGGGG TAAAAACTAA 102653 || || ||| ||||| | | | ||||| || || |||||| || ||||||| | || || || AGGTGTCAAA AAGGCATTGG TGTTTTATGG TGGCAAACCA CCCAAAGGGG TGAAGACAAA 393 TTGGATCATG CATGAATACA GAGTTGTAGA AAATAAAACA AATAACAAGC CACTTGGTTG 102593 |||||| ||| |||||||| | | ||| || ||||||||| ||||| |||| | | |||||| TTGGATTATG CATGAATATA GGCTTGCTGA TAATAAAACA AATAATAAGC CCCCTGGTTG 453 TGATAATATT GTTGCCAACA AAAAAGGATC TTTGAGGGTA AGTCCTAAAT TTTGCATCGA 102533 ||| | TGACCTT... .......... .......... .......... .......... .......... 460 AACTAATTTC TCTATCGTAT CAGATAGGGA TAAGATATAC GTATACTCTA ATCTCCTTGA 102473 .......... .......... .......... .......... .......... .......... 460 ACCCCACAAG TACTATACTA GATATGTTGT TGTTGTAGAT GACTTGATTC AACTTTCAAA 102413 .......... .......... .......... .......... .......... .......... 460 TTTTTGATGA AAATGTTTAA GTTATATATA CATATATATA TAGGCGGAGC TAAAAATTTC 102353 || | |||||| || .......... .......... .......... .......... ...GC-CA-A TAAAAA-ATC 474 GATAAGGGGG TTTAAATCTG AAAAAATGGA TATACGAAAT AGCCGAAAGA GGTTCGACAT 102293 ||||| ACTAAGG... .......... .......... .......... .......... .......... 481 AGATTATTTT AACCATATAA AAATAATACA ATTTTCATAT ATATATACGC GTGGTTAATA 102233 .......... .......... .......... .......... .......... .......... 481 TGAGGAATAT TTTATACTAT TAATGTACTT TAACCAGGGG CGGCTCTAGA GTTGATGAAC 102173 .......... .......... .......... .......... .......... .......... 481 CCTCTCAGCG AAAATTTACG TTGTATATTT AAGGTACCTT TTAATAATTT TTGTATTTAT 102113 .......... .......... .......... .......... .......... .......... 481 ATATTAATTT TGAACCTCTT GAATATAAGA TTAGACGTTG ACTTAGTGGT TTCAGGGGTT 102053 .......... .......... .......... .......... .......... .......... 481 CAAATCACTA TTCTTTTTTT CCTAACCCCC TTAATGAAAA TCCTGAATCG GCCACTAACT 101993 .......... .......... .......... .......... .......... .......... 481 TTAACTGGTT ATAGAAGGTT AATCTTACTA GAAAAAAGCA TGAAATTCTA ACCGACAAAG 101933 .......... .......... .......... .......... .......... .......... 481 ATGTAGTCGC CCAGTTAGAT AAGACGTTTA AATTGGGACG GATAGAGTTA CTTTATTTTT 101873 .......... .......... .......... .......... .......... .......... 481 CACTGTCATA TGTTACTATA TATTGACACT TCACTTAAAG AGTTATCATA TCGATATTTT 101813 .......... .......... .......... .......... .......... .......... 481 TACTATTAGT GTACATAACA CAAACTCGAA TAAATTCAAT GTTTCATTAG CTAGTTAATT 101753 .......... .......... .......... .......... .......... .......... 481 AGTCTAACTT TTTTAAAAAA AAATATTTTT CTTACTCCAC ACTATTTTAT TTTATTTTTT 101693 .......... .......... .......... .......... .......... .......... 481 TGCAGCTAGA TGATTGGGTT TTATGTCGAA TTTACAAGAA GAATAACACA CAAAGGTCCA 101633 ||||| |||||||||| |||||| | | |||||||||| |||||| || |||||| | | .....CTAGA TGATTGGGTT TTATGTAGGA TTTACAAGAA GAATAATACT CAAAGGCCAA 536 TAGATGAT 101625 | ||| || TTGATCAT 544 hqPGS_C10SLe0045H11.1-_SGN-E375922+ (103672 103498,102869 102586,102369 102346,101687 101625) ******************************************************************************** EST sequence 93 +strand 561 n (File: SGN-E264899+) 1 AAATTTGATC CTTGGGAACT ACCTGCTAAG GCGACATTTG GAGAACAAGA ATGGTATTTC 61 TTCAGTCCAA GAGATAGAAA ATATCCTAAC GGGGCGCGCC CAAATAGGGC GGCAACTTCC 121 GGTTATTGGA AGGCTACCGG AACCGACAAG CCGGTGCTCA CCGCCGGCGG GACCCAAAAA 181 GTAGGTGTCA AAAAGGCATT GGTGTTTTAT GGTGGCAAAC CACCCAAAGG GGTGAAGACA 241 AATTGGATTA TGCATGAATA TAGGCTTGCT GATAATAAAA CAAATAATAA GCCCCCTGGT 301 TGTGACCTTG CCAATAAAAA ATCACTAAGG CTAGATGATT GGGTTTTATG TAGGATTTAC 361 AAGAAGAATA ATACTCAAAG GCCAATTGAT CATGAAAGAG ATGATTTGAA TATTGATATG 421 ATGATGGGAT CATCATCAAT TCATCCATCA TGTATACCAA ATTCAATGTC AATGCCAAAT 481 ATATTTGGTC AACCAAAAAT ACCACAACTA AAATCTTCAA ATTTTGGCAC TACATTAATT 541 CATGATCAAA ATGACCAAAT T Predicted gene structure (within gDNA segment 104061 to 99137): Exon 1 103522 103498 ( 25 n); cDNA 1 25 ( 25 n); score: 0.880 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 0), Pa: 0.995 (s: 0.84) Exon 2 102869 102586 ( 284 n); cDNA 26 309 ( 284 n); score: 0.824 Intron 2 102585 102370 ( 216 n); Pd: 0.000 (s: 0.76), Pa: 0.944 (s: 0) Exon 3 102369 102346 ( 24 n); cDNA 310 330 ( 21 n); score: 0.667 Intron 3 102345 101688 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0.92) Exon 4 101687 101625 ( 63 n); cDNA 331 393 ( 63 n); score: 0.873 MATCH C10SLe0045H11.1- SGN-E264899+ 0.833 396 0.706 C PGS_C10SLe0045H11.1-_SGN-E264899+ (103522 103498,102869 102586,102369 102346,101687 101625) Alignment (genomic DNA sequence = upper lines): AAGTTTGATC CATGGGAACT CCCTGGTACT ATTTTCACCA CTATACTATA TTTTCTTGCC 103463 || ||||||| | |||||||| |||| AAATTTGATC CTTGGGAACT ACCTG..... .......... .......... .......... 25 CTATAACTTA TATATAGGGG AAAAAGATCG GAGTCAGCGA TGAACAATTA TTGTGTCTAA 103403 .......... .......... .......... .......... .......... .......... 25 ATTAAATTTT AAATATGCAA TAGATTGGTG ACGAATTTCG TTGCTAATTA ATTTTTTAGT 103343 .......... .......... .......... .......... .......... .......... 25 GATAAATTAA TATTTTTCCC CTTTTTAATC TTCATGTTTT TTATCACAAA GTTTTCTATG 103283 .......... .......... .......... .......... .......... .......... 25 ACCAACTTAT AAAGATTTGA ACTCGATCAA TTTTTTTTTT AGAATGAATG AACTTATGTT 103223 .......... .......... .......... .......... .......... .......... 25 ATATATAGTG ATATTTTAAA TGCTTTTTTA TATTTTCAAA AGATATCCAC GATAACGTGT 103163 .......... .......... .......... .......... .......... .......... 25 AAAAAGTGAA TTTGCAAAAA AAAAAATGTA GTACCTTTTA TTTAATTTTA TTGTAGATAA 103103 .......... .......... .......... .......... .......... .......... 25 TTTAGATTTT AATTTTGAAT TTGTTTAATT TAAATTCTGA ATCGTATAAT ATTTATTTAA 103043 .......... .......... .......... .......... .......... .......... 25 TTTCTATTTT TTGAGTTTTT TTTTGGAGGG TGCTTAAAAA GTAGTATTCA CAAATATAAA 102983 .......... .......... .......... .......... .......... .......... 25 GTAGTGGACA AACATAAAGT AGTGGACCCA TAATTTATTT TTTTAAAAAT TATATTAAAA 102923 .......... .......... .......... .......... .......... .......... 25 CTATTTGTTA AGTTTAAATT CTGAATTATC TTCTTATCAT GTGTTTAACG CAGCTAAGGC 102863 ||||||| .......... .......... .......... .......... .......... ...CTAAGGC 32 AATATTCGGA GAGCAAGAAT GGTTCTTTTT TAGTCCAAGA GATAGAAAAT ATCCTAACGG 102803 | ||| ||| || ||||||| ||| || || ||||||||| |||||||||| |||||||||| GACATTTGGA GAACAAGAAT GGTATTTCTT CAGTCCAAGA GATAGAAAAT ATCCTAACGG 92 GGCGAGGCCA AATCGGGCTG CAACATCGGG TTATTGGAAG GCTACCGGAA CCGACAAGCC 102743 |||| | ||| ||| |||| | |||| || || |||||||||| |||||||||| |||||||||| GGCGCGCCCA AATAGGGCGG CAACTTCCGG TTATTGGAAG GCTACCGGAA CCGACAAGCC 152 GGTTTTTACT TCCGGTGGAA CACAAAAGGT TGGGGTAAAA AAGGCGCTCG TTTTTTACGG 102683 ||| | || |||| || | | ||||| || || || ||| ||||| | | | ||||| || GGTGCTCACC GCCGGCGGGA CCCAAAAAGT AGGTGTCAAA AAGGCATTGG TGTTTTATGG 212 CGGTAAACCA CCAAAAGGGG TAAAAACTAA TTGGATCATG CATGAATACA GAGTTGTAGA 102623 || |||||| || ||||||| | || || || |||||| ||| |||||||| | | ||| || TGGCAAACCA CCCAAAGGGG TGAAGACAAA TTGGATTATG CATGAATATA GGCTTGCTGA 272 AAATAAAACA AATAACAAGC CACTTGGTTG TGATAATATT GTTGCCAACA AAAAAGGATC 102563 ||||||||| ||||| |||| | | |||||| ||| | TAATAAAACA AATAATAAGC CCCCTGGTTG TGACCTT... .......... .......... 309 TTTGAGGGTA AGTCCTAAAT TTTGCATCGA AACTAATTTC TCTATCGTAT CAGATAGGGA 102503 .......... .......... .......... .......... .......... .......... 309 TAAGATATAC GTATACTCTA ATCTCCTTGA ACCCCACAAG TACTATACTA GATATGTTGT 102443 .......... .......... .......... .......... .......... .......... 309 TGTTGTAGAT GACTTGATTC AACTTTCAAA TTTTTGATGA AAATGTTTAA GTTATATATA 102383 .......... .......... .......... .......... .......... .......... 309 CATATATATA TAGGCGGAGC TAAAAATTTC GATAAGGGGG TTTAAATCTG AAAAAATGGA 102323 || | |||||| || ||||| .......... ...GC-CA-A TAAAAA-ATC ACTAAGG... .......... .......... 330 TATACGAAAT AGCCGAAAGA GGTTCGACAT AGATTATTTT AACCATATAA AAATAATACA 102263 .......... .......... .......... .......... .......... .......... 330 ATTTTCATAT ATATATACGC GTGGTTAATA TGAGGAATAT TTTATACTAT TAATGTACTT 102203 .......... .......... .......... .......... .......... .......... 330 TAACCAGGGG CGGCTCTAGA GTTGATGAAC CCTCTCAGCG AAAATTTACG TTGTATATTT 102143 .......... .......... .......... .......... .......... .......... 330 AAGGTACCTT TTAATAATTT TTGTATTTAT ATATTAATTT TGAACCTCTT GAATATAAGA 102083 .......... .......... .......... .......... .......... .......... 330 TTAGACGTTG ACTTAGTGGT TTCAGGGGTT CAAATCACTA TTCTTTTTTT CCTAACCCCC 102023 .......... .......... .......... .......... .......... .......... 330 TTAATGAAAA TCCTGAATCG GCCACTAACT TTAACTGGTT ATAGAAGGTT AATCTTACTA 101963 .......... .......... .......... .......... .......... .......... 330 GAAAAAAGCA TGAAATTCTA ACCGACAAAG ATGTAGTCGC CCAGTTAGAT AAGACGTTTA 101903 .......... .......... .......... .......... .......... .......... 330 AATTGGGACG GATAGAGTTA CTTTATTTTT CACTGTCATA TGTTACTATA TATTGACACT 101843 .......... .......... .......... .......... .......... .......... 330 TCACTTAAAG AGTTATCATA TCGATATTTT TACTATTAGT GTACATAACA CAAACTCGAA 101783 .......... .......... .......... .......... .......... .......... 330 TAAATTCAAT GTTTCATTAG CTAGTTAATT AGTCTAACTT TTTTAAAAAA AAATATTTTT 101723 .......... .......... .......... .......... .......... .......... 330 CTTACTCCAC ACTATTTTAT TTTATTTTTT TGCAGCTAGA TGATTGGGTT TTATGTCGAA 101663 ||||| |||||||||| |||||| | | .......... .......... .......... .....CTAGA TGATTGGGTT TTATGTAGGA 355 TTTACAAGAA GAATAACACA CAAAGGTCCA TAGATGAT 101625 |||||||||| |||||| || |||||| | | | ||| || TTTACAAGAA GAATAATACT CAAAGGCCAA TTGATCAT 393 hqPGS_C10SLe0045H11.1-_SGN-E264899+ (103522 103498,102869 102586,102369 102346,101687 101625) ******************************************************************************** EST sequence 51 +strand 817 n (File: SGN-E261511+) 1 TGATTTTCTG TATTTTTGTA CTACTAACTC ACAGCACACA CACCATTTCT CTCTCTCTTC 61 TAAGCTGAAT TTTCGTATCA TACAATTTAC TCTTTCTTTC TTTTTTTTTT ATTATTATTT 121 TTATTATATA GTTTTATAAT CAGGTCGCTC TGATTAAATA TATTTGAAAA TTTTTATCAA 181 ATAATATTGT GGTCATGGAG AGTACCGATT CATCAACCGG CTCTCATCAT CAACCACAAT 241 TGCCACCTGG ATTTCGATTT CATCCAACTG ATGAAGAGCT TGTGGTTCAT TATCTTAAGA 301 AAAGAGTTGC CTCTGTTCCT CTTCCTGTTT CTATTATTGC TGAAGTTGAT CTTTACAAAT 361 TTGATCCTTG GGAACTACCT GCTAAGGCGA CATTTGGAGA ACAAGAATGG TATTTCTTCA 421 GTCCAAGAGA TAGAAAATAT CCTAACGGGG CGCGCCCAAA TAGGGCGGCA ACTTCCGGTT 481 ATTGGAAGGC TACCGGAACC GACAAGCCGG TGCTCACCGC CGGCGGGACC CAAAAAGTAG 541 GTGTCAAAAA GGCATTGGGT GTTTTATGGT GGCAAACCAC CCAAAGGGGT GAAGACAAAT 601 TGGATTATGC ATGAATATAG GCTTGCTGAT AATAAAACAA ATAATAAGCC CCCTGGTTGT 661 GACCTTGCCA ATAAAAAATC CTAAGGCTAG ATGATTGGGG TTTTATGTAG GATTTACAAG 721 AAGAATAATA CTCAAAGGGC CATTGATCAT GAAAGAGATG ATTTGATATG GATNATGATG 781 ATGGGATCAT CATNCATTCA TCCATCATGT ATACCAA Predicted gene structure (within gDNA segment 107621 to 99070): Exon 1 106095 106076 ( 20 n); cDNA 97 114 ( 18 n); score: 0.800 Intron 1 106075 105010 (1066 n); Pd: 0.969 (s: 0), Pa: 0.000 (s: 0) Exon 2 105009 104988 ( 22 n); cDNA 115 136 ( 22 n); score: 0.773 Intron 2 104987 104904 ( 84 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 104903 104852 ( 52 n); cDNA 137 187 ( 51 n); score: 0.644 Intron 3 104851 103692 (1160 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.76) Exon 4 103691 103498 ( 194 n); cDNA 188 381 ( 194 n); score: 0.753 Intron 4 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 5 102869 102586 ( 284 n); cDNA 382 666 ( 285 n); score: 0.815 Intron 5 102585 102370 ( 216 n); Pd: 0.000 (s: 0.76), Pa: 0.944 (s: 0) Exon 6 102369 102346 ( 24 n); cDNA 667 686 ( 20 n); score: 0.667 Intron 6 102345 101688 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0.87) Exon 7 101687 101632 ( 56 n); cDNA 687 743 ( 57 n); score: 0.866 MATCH C10SLe0045H11.1- SGN-E261511+ 0.784 652 0.798 C PGS_C10SLe0045H11.1-_SGN-E261511+ (106095 106076,105009 104988,104903 104852,103691 103498,102869 102586,102369 102346,101687 101632) Alignment (genomic DNA sequence = upper lines): TTGCTTTTTT CTTTAATTAG GTAAGTGCAA CATCCATAAA TATTTTTCAA GATATTTTTC 106036 || ||||||| ||| |||| TTTCTTTTTT TTTT-ATTA- .......... .......... .......... .......... 114 CGTAATTCAT TCACAATTTT TTTTAAAAGA ATTATTTAGT GTTTACCTGT TTACATTTAT 105976 .......... .......... .......... .......... .......... .......... 114 ATTGAAATTA ATTAAATTTA AAATCATAAT TAAGAGTGGA GAAATTTCAT TTATCAATAA 105916 .......... .......... .......... .......... .......... .......... 114 CCTAAATACT TAATTCTCCA ATGAAACTAA CTATAAGATT TTTCTCCCTA ATAATAGGTT 105856 .......... .......... .......... .......... .......... .......... 114 CATTTATTTT AGATTGGTCA TGTGAAGGAT ATGTGTTGAA ACAAATCCCT AAATTTCTTA 105796 .......... .......... .......... .......... .......... .......... 114 TTCTTGTTAA GTTTAAAAAT AAAAATGCTA AAAAAATTTT TTACAATGAA AGAATATTAT 105736 .......... .......... .......... .......... .......... .......... 114 AAAACTAATT AAATCCGTCC AAATTATATC ATACGTATCG CGAGGATTCA TCATAAATTG 105676 .......... .......... .......... .......... .......... .......... 114 ACTACTAGTC GTCGTATTTG TTGTCTCTAT CCGAGTTCAA GATCAACGAT ACTATATATA 105616 .......... .......... .......... .......... .......... .......... 114 AATACATCGA TAGAGACAAG TTGTTGTAAA AAAATTCCAA GTGTGACACT AGGCCAAATT 105556 .......... .......... .......... .......... .......... .......... 114 TGTCCAAAGA GTAGCCTAGA AATGCTTTCT TATCTTATTA TCTGTCTGTC GAGTCATGTC 105496 .......... .......... .......... .......... .......... .......... 114 AAACTTCTGT TGTAAAATTT AATCACTCCT AATTCGATAT TTCAAAATCG AGTTTTGCAA 105436 .......... .......... .......... .......... .......... .......... 114 ATTAAGAAAA TTTCATTGTA GGACGAGTTT CCTCTTTAAT TAAATGATTC ATATGAGCGC 105376 .......... .......... .......... .......... .......... .......... 114 CACGAATTCA ACTGAATATC AAATAAAATA CTGAATGATT GATATAGATC TCTTTATATA 105316 .......... .......... .......... .......... .......... .......... 114 TCTTGTGCAG GATAAAGTAG TTCTGCGTAT ATGCCCCTTT TACTCGATTG TCCACGTGTT 105256 .......... .......... .......... .......... .......... .......... 114 GGTACCAACT TGCATGCGTA TCGATTAATT ATATTGCCTA ATTTTCAGTT ATCAAGCTCT 105196 .......... .......... .......... .......... .......... .......... 114 AATTACATCA TTGTCATGTA TTAATCTAAT CACCTCTTCA ATTTATGCTA ATGACGACCT 105136 .......... .......... .......... .......... .......... .......... 114 CCACTTCTAA TTTAATATTA ACATATACAC TATTTATTTT TCCACTAACG ACTAATTTTT 105076 .......... .......... .......... .......... .......... .......... 114 TTAATTTTTT TTTGACAATA TTTATATAGT AATTTCTGCT AAGGTTAATT CTTAGTTTTT 105016 .......... .......... .......... .......... .......... .......... 114 ATCAACTCAT TTTTACTATA TATAATTAAT GTCCTTCTCA AAGCCTAATA ACGCCCATTT 104956 | || ||||| |||| || ||| ......TTAT TTTTATTATA TAGTTTTA.. .......... .......... .......... 136 TACGTTAAGT TAAACTGTTA GAATTGACGA AATTAGGATT AAATTTTAAA AAGAATCTTG 104896 |||| | .......... .......... .......... .......... .......... ..TAATCAGG 144 -AAATATGAT TTAAATATAT TCACAAAATT ATATCAGAAA AATAAATAAA AAATTTAAAA 104837 | ||| |||||||||| | ||| || ||||| || |||| TCGCTCTGA- TTAAATATAT TTGAAAATTT TTATCA-AAT AATAT..... .......... 187 TAAAATTGTG TAAGAAAAAA AGAATTGTTA TCGATTTTAA ATAAAAAAGA AAAAATAACA 104777 .......... .......... .......... .......... .......... .......... 187 TATATAAAAC GAAAAAAAAT ATATTTTTCT TAGTGAGTAG ATTTATCCAC ACTAGTAATT 104717 .......... .......... .......... .......... .......... .......... 187 GTGTGATTAT TGTAACATAT TATTCATTAG TCTAGGTACG AATTAATTGA CTCGAATATT 104657 .......... .......... .......... .......... .......... .......... 187 ATCGTCCTAA TAAAAAAAAT ATTCTTAATT TTGTTCTATT TTTTAATTAG CTTATTCCAA 104597 .......... .......... .......... .......... .......... .......... 187 AGTAAAAAAA ATCAAAGACA TGTTCTTATA TTTATGAACT TCTTAATTAA ACATTTATAA 104537 .......... .......... .......... .......... .......... .......... 187 TTACCACAAG AATCTCAAGA CATGTTTATA ATTAATAAAT TTAGATGTCT GTTTTTCTTT 104477 .......... .......... .......... .......... .......... .......... 187 CTAATTAAAT TAATATAATT TTACCTTTGA TAGCATATAT TTATAATTAC CATAGAATTC 104417 .......... .......... .......... .......... .......... .......... 187 AAAGCATGTT TACTGTTAGA TAAATTTAAA TATCTTCTAT ATTTTCTAAA ACCTTTGGCG 104357 .......... .......... .......... .......... .......... .......... 187 TCCAATTCGA TCAAAGTATG TCCACACAAT TCAATACTAC AAAAACTTTC TATATAAAGA 104297 .......... .......... .......... .......... .......... .......... 187 GAGATAATAG TCAAAATACA TCTGAAATGT TACGTTTTTT GTAAAATTTC TATTTAAATT 104237 .......... .......... .......... .......... .......... .......... 187 ATCACGTGCT CAATTTTTTT TACCTAAATC ATTATCAACT ATTTAACAAT ACACATCTCA 104177 .......... .......... .......... .......... .......... .......... 187 ATTATCAGTT ATTTTCTTTT TCTACTTGAA TACAGTAATA TTTCAGATAA AAAAAGAAAA 104117 .......... .......... .......... .......... .......... .......... 187 AGAGAAACAA TTGATAATTA TATTAACGCG TGATTTGATA AATAATTAAT GAGTTTATGT 104057 .......... .......... .......... .......... .......... .......... 187 ATAAAAAATG AACACCTCAT GGTTCAAAAA AAAATCTTGC AAAAATATAA TACTCTAGAT 103997 .......... .......... .......... .......... .......... .......... 187 ACTATTTTTT ACCATTAAAG TATATATTTC AATATATATA TATATATATA TATATATATA 103937 .......... .......... .......... .......... .......... .......... 187 TAAACAAAAA TATATGTAAT GGCATTACTG TAAATTCAGT GTTGCCTTAT ACCATATATA 103877 .......... .......... .......... .......... .......... .......... 187 AGTAAGTGTG GGGGCTAAAT TAACCAACTA AATTCCTTCT TGTTTATCAT TTTCTCTCTT 103817 .......... .......... .......... .......... .......... .......... 187 CCCAAAAAAA AATCCCAAAA TTTAATCATA ATACAATTCG AATTTATCAA CCTCGTACTA 103757 .......... .......... .......... .......... .......... .......... 187 CGTACATATT TTTGTTGGTA CGTAAAATAC TGAATTCAGG TCAACTCAAA CATCGTAAAT 103697 .......... .......... .......... .......... .......... .......... 187 TGTGATTTCT TTATGGAAAG TACGGATTCA TCAACCGGGA CACGTCATCA GCCTCAACTC 103637 | | | ||||| || ||| |||||| |||||||| | | |||||| || ||| | .....TGTGG TCATGGAGAG TACCGATTCA TCAACCGGCT CTCATCATCA ACCACAATTG 242 CCACCGGGGT TTCGATTCCA CCCGACGGAC GAAGAACTCA TCGTCCACTA CCTCAAAAAA 103577 ||||| || | ||||||| || || || || ||||| || | || || || || || ||| CCACCTGGAT TTCGATTTCA TCCAACTGAT GAAGAGCTTG TGGTTCATTA TCTTAAGAAA 302 CGAGTCGCCG GCGCTCCGAT TCCGGTGGAT ATTATTGGTG AAATTGATCT TTATAAGTTT 103517 |||| ||| | ||| | ||| || | ||||||| || || ||||||| ||| || ||| AGAGTTGCCT CTGTTCCTCT TCCTGTTTCT ATTATTGCTG AAGTTGATCT TTACAAATTT 362 GATCCATGGG AACTCCCTGG TACTATTTTC ACCACTATAC TATATTTTCT TGCCCTATAA 103457 ||||| |||| |||| |||| GATCCTTGGG AACTACCTG. .......... .......... .......... .......... 381 CTTATATATA GGGGAAAAAG ATCGGAGTCA GCGATGAACA ATTATTGTGT CTAAATTAAA 103397 .......... .......... .......... .......... .......... .......... 381 TTTTAAATAT GCAATAGATT GGTGACGAAT TTCGTTGCTA ATTAATTTTT TAGTGATAAA 103337 .......... .......... .......... .......... .......... .......... 381 TTAATATTTT TCCCCTTTTT AATCTTCATG TTTTTTATCA CAAAGTTTTC TATGACCAAC 103277 .......... .......... .......... .......... .......... .......... 381 TTATAAAGAT TTGAACTCGA TCAATTTTTT TTTTAGAATG AATGAACTTA TGTTATATAT 103217 .......... .......... .......... .......... .......... .......... 381 AGTGATATTT TAAATGCTTT TTTATATTTT CAAAAGATAT CCACGATAAC GTGTAAAAAG 103157 .......... .......... .......... .......... .......... .......... 381 TGAATTTGCA AAAAAAAAAA TGTAGTACCT TTTATTTAAT TTTATTGTAG ATAATTTAGA 103097 .......... .......... .......... .......... .......... .......... 381 TTTTAATTTT GAATTTGTTT AATTTAAATT CTGAATCGTA TAATATTTAT TTAATTTCTA 103037 .......... .......... .......... .......... .......... .......... 381 TTTTTTGAGT TTTTTTTTGG AGGGTGCTTA AAAAGTAGTA TTCACAAATA TAAAGTAGTG 102977 .......... .......... .......... .......... .......... .......... 381 GACAAACATA AAGTAGTGGA CCCATAATTT ATTTTTTTAA AAATTATATT AAAACTATTT 102917 .......... .......... .......... .......... .......... .......... 381 GTTAAGTTTA AATTCTGAAT TATCTTCTTA TCATGTGTTT AACGCAGCTA AGGCAATATT 102857 ||| |||| | ||| .......... .......... .......... .......... .......CTA AGGCGACATT 394 CGGAGAGCAA GAATGGTTCT TTTTTAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGAG 102797 ||||| ||| ||||||| | | || ||||| |||||||||| |||||||||| |||||||| | TGGAGAACAA GAATGGTATT TCTTCAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGCG 454 GCCAAATCGG GCTGCAACAT CGGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTTTT 102737 |||||| || || ||||| | | |||||||| |||||||||| |||||||||| ||||||| | CCCAAATAGG GCGGCAACTT CCGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTGCT 514 TACTTCCGGT GGAACACAAA AGGTTGGGGT AAAAAAGGCG CT-CGTTTTT TACGGCGGTA 102678 || |||| || || |||| | || || || |||||||| | || ||| || || || | CACCGCCGGC GGGACCCAAA AAGTAGGTGT CAAAAAGGCA TTGGGTGTTT TATGGTGGCA 574 AACCACCAAA AGGGGTAAAA ACTAATTGGA TCATGCATGA ATACAGAGTT GTAGAAAATA 102618 ||||||| || |||||| || || ||||||| | |||||||| ||| || || | || |||| AACCACCCAA AGGGGTGAAG ACAAATTGGA TTATGCATGA ATATAGGCTT GCTGATAATA 634 AAACAAATAA CAAGCCACTT GGTTGTGATA ATATTGTTGC CAACAAAAAA GGATCTTTGA 102558 |||||||||| ||||| | | |||||||| | AAACAAATAA TAAGCCCCCT GGTTGTGACC TT........ .......... .......... 666 GGGTAAGTCC TAAATTTTGC ATCGAAACTA ATTTCTCTAT CGTATCAGAT AGGGATAAGA 102498 .......... .......... .......... .......... .......... .......... 666 TATACGTATA CTCTAATCTC CTTGAACCCC ACAAGTACTA TACTAGATAT GTTGTTGTTG 102438 .......... .......... .......... .......... .......... .......... 666 TAGATGACTT GATTCAACTT TCAAATTTTT GATGAAAATG TTTAAGTTAT ATATACATAT 102378 .......... .......... .......... .......... .......... .......... 666 ATATATAGGC GGAGCTAAAA ATTTCGATAA GGGGGTTTAA ATCTGAAAAA ATGGATATAC 102318 || | ||||| | || ||| || ........GC -CA-ATAAAA A-ATC-CTAA GG........ .......... .......... 686 GAAATAGCCG AAAGAGGTTC GACATAGATT ATTTTAACCA TATAAAAATA ATACAATTTT 102258 .......... .......... .......... .......... .......... .......... 686 CATATATATA TACGCGTGGT TAATATGAGG AATATTTTAT ACTATTAATG TACTTTAACC 102198 .......... .......... .......... .......... .......... .......... 686 AGGGGCGGCT CTAGAGTTGA TGAACCCTCT CAGCGAAAAT TTACGTTGTA TATTTAAGGT 102138 .......... .......... .......... .......... .......... .......... 686 ACCTTTTAAT AATTTTTGTA TTTATATATT AATTTTGAAC CTCTTGAATA TAAGATTAGA 102078 .......... .......... .......... .......... .......... .......... 686 CGTTGACTTA GTGGTTTCAG GGGTTCAAAT CACTATTCTT TTTTTCCTAA CCCCCTTAAT 102018 .......... .......... .......... .......... .......... .......... 686 GAAAATCCTG AATCGGCCAC TAACTTTAAC TGGTTATAGA AGGTTAATCT TACTAGAAAA 101958 .......... .......... .......... .......... .......... .......... 686 AAGCATGAAA TTCTAACCGA CAAAGATGTA GTCGCCCAGT TAGATAAGAC GTTTAAATTG 101898 .......... .......... .......... .......... .......... .......... 686 GGACGGATAG AGTTACTTTA TTTTTCACTG TCATATGTTA CTATATATTG ACACTTCACT 101838 .......... .......... .......... .......... .......... .......... 686 TAAAGAGTTA TCATATCGAT ATTTTTACTA TTAGTGTACA TAACACAAAC TCGAATAAAT 101778 .......... .......... .......... .......... .......... .......... 686 TCAATGTTTC ATTAGCTAGT TAATTAGTCT AACTTTTTTA AAAAAAAATA TTTTTCTTAC 101718 .......... .......... .......... .......... .......... .......... 686 TCCACACTAT TTTATTTTAT TTTTTTGCAG CTAGATGATT -GGGTTTTAT GTCGAATTTA 101659 |||||||||| ||||||||| || | ||||| .......... .......... .......... CTAGATGATT GGGGTTTTAT GTAGGATTTA 716 CAAGAAGAAT AACACACAAA GGTCCAT 101632 |||||||||| || || |||| || |||| CAAGAAGAAT AATACTCAAA GGGCCAT 743 hqPGS_C10SLe0045H11.1-_SGN-E261511+ (105009 104988,104903 104852,103691 103498,102869 102586,102369 102346,101687 101632) ******************************************************************************** EST sequence 103 +strand 526 n (File: SGN-E375426+) 1 CGATTCATCA GCCGGTTCTG ATAATCAACC ACAATTGCCA CCTGGATTTC GATTTCATAC 61 AACTGATGAA GAGCTTGTGG TTCATTATCT TAACAAAAGA GTTGCCTTTG TTCCTCTTCC 121 TGTTTCTATT ATTGCTGAAG TTGATCTTTA CAAATTTGAT CCTTGGGAAC TACCTGCTAA 181 GGCGACATTT GGAGAACAAG AATGGTATTT CTTCAGTCCA AGAGATAGAA AATATCCTAA 241 CGGGGCGCGC CCAAATAGGG CGGCTACTTC CGGTTATTGG AAGGCTACCG GAACCGACAA 301 GCCGGTGCTC ACCGCCGGCG GGACCCAAAA AGTAGGTGTC AAAAAGGCAT TGGTGTTTTA 361 TGGTGGCAAA CCACCCAAAG GGGTGAAGAC AAATTGGATT ATGCATGAAT ATAGGCTTGC 421 TGATAATAAA ACAAATAATA AGCCCCCTGG TTGTGACCTT GCCAATAAAA AATCACTAAG 481 GCTAGATGAT TGGGTTTTAT GTATGATTTA CAAGAAGAAT TATACT Predicted gene structure (within gDNA segment 105571 to 99930): Exon 1 103672 103498 ( 175 n); cDNA 2 176 ( 175 n); score: 0.737 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 2 102869 102588 ( 282 n); cDNA 177 458 ( 282 n); score: 0.823 Intron 2 102587 102370 ( 218 n); Pd: 0.000 (s: 0.78), Pa: 0.944 (s: 0) Exon 3 102369 102346 ( 24 n); cDNA 459 481 ( 23 n); score: 0.583 Intron 3 102345 101688 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0.89) Exon 4 101687 101644 ( 44 n); cDNA 482 525 ( 44 n); score: 0.886 MATCH C10SLe0045H11.1- SGN-E375426+ 0.790 525 0.998 C PGS_C10SLe0045H11.1-_SGN-E375426+ (103672 103498,102869 102588,102369 102346,101687 101644) Alignment (genomic DNA sequence = upper lines): GATTCATCAA CCGGGACACG TCATCAGCCT CAACTCCCAC CGGGGTTTCG ATTCCACCCG 103613 ||||||||| |||| | | |||| || ||| | |||| | || ||||| ||| || | GATTCATCAG CCGGTTCTGA TAATCAACCA CAATTGCCAC CTGGATTTCG ATTTCATACA 61 ACGGACGAAG AACTCATCGT CCACTACCTC AAAAAACGAG TCGCCGGCGC TCCGATTCCG 103553 || || |||| | || | || || || || || ||| ||| | ||| | ||| |||| ACTGATGAAG AGCTTGTGGT TCATTATCTT AACAAAAGAG TTGCCTTTGT TCCTCTTCCT 121 GTGGATATTA TTGGTGAAAT TGATCTTTAT AAGTTTGATC CATGGGAACT CCCTGGTACT 103493 || ||||| ||| |||| | ||||||||| || ||||||| | |||||||| |||| GTTTCTATTA TTGCTGAAGT TGATCTTTAC AAATTTGATC CTTGGGAACT ACCTG..... 176 ATTTTCACCA CTATACTATA TTTTCTTGCC CTATAACTTA TATATAGGGG AAAAAGATCG 103433 .......... .......... .......... .......... .......... .......... 176 GAGTCAGCGA TGAACAATTA TTGTGTCTAA ATTAAATTTT AAATATGCAA TAGATTGGTG 103373 .......... .......... .......... .......... .......... .......... 176 ACGAATTTCG TTGCTAATTA ATTTTTTAGT GATAAATTAA TATTTTTCCC CTTTTTAATC 103313 .......... .......... .......... .......... .......... .......... 176 TTCATGTTTT TTATCACAAA GTTTTCTATG ACCAACTTAT AAAGATTTGA ACTCGATCAA 103253 .......... .......... .......... .......... .......... .......... 176 TTTTTTTTTT AGAATGAATG AACTTATGTT ATATATAGTG ATATTTTAAA TGCTTTTTTA 103193 .......... .......... .......... .......... .......... .......... 176 TATTTTCAAA AGATATCCAC GATAACGTGT AAAAAGTGAA TTTGCAAAAA AAAAAATGTA 103133 .......... .......... .......... .......... .......... .......... 176 GTACCTTTTA TTTAATTTTA TTGTAGATAA TTTAGATTTT AATTTTGAAT TTGTTTAATT 103073 .......... .......... .......... .......... .......... .......... 176 TAAATTCTGA ATCGTATAAT ATTTATTTAA TTTCTATTTT TTGAGTTTTT TTTTGGAGGG 103013 .......... .......... .......... .......... .......... .......... 176 TGCTTAAAAA GTAGTATTCA CAAATATAAA GTAGTGGACA AACATAAAGT AGTGGACCCA 102953 .......... .......... .......... .......... .......... .......... 176 TAATTTATTT TTTTAAAAAT TATATTAAAA CTATTTGTTA AGTTTAAATT CTGAATTATC 102893 .......... .......... .......... .......... .......... .......... 176 TTCTTATCAT GTGTTTAACG CAGCTAAGGC AATATTCGGA GAGCAAGAAT GGTTCTTTTT 102833 ||||||| | ||| ||| || ||||||| ||| || || .......... .......... ...CTAAGGC GACATTTGGA GAACAAGAAT GGTATTTCTT 213 TAGTCCAAGA GATAGAAAAT ATCCTAACGG GGCGAGGCCA AATCGGGCTG CAACATCGGG 102773 ||||||||| |||||||||| |||||||||| |||| | ||| ||| |||| | | || || || CAGTCCAAGA GATAGAAAAT ATCCTAACGG GGCGCGCCCA AATAGGGCGG CTACTTCCGG 273 TTATTGGAAG GCTACCGGAA CCGACAAGCC GGTTTTTACT TCCGGTGGAA CACAAAAGGT 102713 |||||||||| |||||||||| |||||||||| ||| | || |||| || | | ||||| || TTATTGGAAG GCTACCGGAA CCGACAAGCC GGTGCTCACC GCCGGCGGGA CCCAAAAAGT 333 TGGGGTAAAA AAGGCGCTCG TTTTTTACGG CGGTAAACCA CCAAAAGGGG TAAAAACTAA 102653 || || ||| ||||| | | | ||||| || || |||||| || ||||||| | || || || AGGTGTCAAA AAGGCATTGG TGTTTTATGG TGGCAAACCA CCCAAAGGGG TGAAGACAAA 393 TTGGATCATG CATGAATACA GAGTTGTAGA AAATAAAACA AATAACAAGC CACTTGGTTG 102593 |||||| ||| |||||||| | | ||| || ||||||||| ||||| |||| | | |||||| TTGGATTATG CATGAATATA GGCTTGCTGA TAATAAAACA AATAATAAGC CCCCTGGTTG 453 TGATAATATT GTTGCCAACA AAAAAGGATC TTTGAGGGTA AGTCCTAAAT TTTGCATCGA 102533 ||| TGACC..... .......... .......... .......... .......... .......... 458 AACTAATTTC TCTATCGTAT CAGATAGGGA TAAGATATAC GTATACTCTA ATCTCCTTGA 102473 .......... .......... .......... .......... .......... .......... 458 ACCCCACAAG TACTATACTA GATATGTTGT TGTTGTAGAT GACTTGATTC AACTTTCAAA 102413 .......... .......... .......... .......... .......... .......... 458 TTTTTGATGA AAATGTTTAA GTTATATATA CATATATATA TAGGCGGAGC TAAAAATTTC 102353 | |||||| || .......... .......... .......... .......... ...TTGCCAA TAAAAA-ATC 474 GATAAGGGGG TTTAAATCTG AAAAAATGGA TATACGAAAT AGCCGAAAGA GGTTCGACAT 102293 ||||| ACTAAGG... .......... .......... .......... .......... .......... 481 AGATTATTTT AACCATATAA AAATAATACA ATTTTCATAT ATATATACGC GTGGTTAATA 102233 .......... .......... .......... .......... .......... .......... 481 TGAGGAATAT TTTATACTAT TAATGTACTT TAACCAGGGG CGGCTCTAGA GTTGATGAAC 102173 .......... .......... .......... .......... .......... .......... 481 CCTCTCAGCG AAAATTTACG TTGTATATTT AAGGTACCTT TTAATAATTT TTGTATTTAT 102113 .......... .......... .......... .......... .......... .......... 481 ATATTAATTT TGAACCTCTT GAATATAAGA TTAGACGTTG ACTTAGTGGT TTCAGGGGTT 102053 .......... .......... .......... .......... .......... .......... 481 CAAATCACTA TTCTTTTTTT CCTAACCCCC TTAATGAAAA TCCTGAATCG GCCACTAACT 101993 .......... .......... .......... .......... .......... .......... 481 TTAACTGGTT ATAGAAGGTT AATCTTACTA GAAAAAAGCA TGAAATTCTA ACCGACAAAG 101933 .......... .......... .......... .......... .......... .......... 481 ATGTAGTCGC CCAGTTAGAT AAGACGTTTA AATTGGGACG GATAGAGTTA CTTTATTTTT 101873 .......... .......... .......... .......... .......... .......... 481 CACTGTCATA TGTTACTATA TATTGACACT TCACTTAAAG AGTTATCATA TCGATATTTT 101813 .......... .......... .......... .......... .......... .......... 481 TACTATTAGT GTACATAACA CAAACTCGAA TAAATTCAAT GTTTCATTAG CTAGTTAATT 101753 .......... .......... .......... .......... .......... .......... 481 AGTCTAACTT TTTTAAAAAA AAATATTTTT CTTACTCCAC ACTATTTTAT TTTATTTTTT 101693 .......... .......... .......... .......... .......... .......... 481 TGCAGCTAGA TGATTGGGTT TTATGTCGAA TTTACAAGAA GAATAACAC 101644 ||||| |||||||||| |||||| | |||||||||| |||| | || .....CTAGA TGATTGGGTT TTATGTATGA TTTACAAGAA GAATTATAC 525 hqPGS_C10SLe0045H11.1-_SGN-E375426+ (103672 103498,102869 102588,102369 102346,101687 101644) ******************************************************************************** EST sequence 117 +strand 670 n (File: SGN-E276804+) 1 TTTTCTCTCT TCCCAAAAAA AAATCCCAAA ATTTAATCAT AATACAATTC GAATTTATCA 61 ACCTCGTACA TATTTTTGTT GGTACGTAAA ATACTGAATT CAGGTCAACT CAAACATCGT 121 AAATTGTGAT TTCTTTATGG AAAGTACGGA TTCATCAACC GGGACACGTC ATCAGCCTCA 181 ACTCCCACCG GGGTTTCGAT TCCACCCGAC GGACGAAGAA CTCATCGTCC ACTACCTCAA 241 AAAACGAGTC GCCGGCGCTC CGATTCCGGT GGATATTATT GGTGAAATTG ATCTTTATAA 301 GTTTGATCCA TGGGAACTCC CTGCTAAGGC AATATTCGGA GAGCAAGAAT GGTTCTTTTT 361 TAGTCCAAGA GATAGAAAAT ATCCTAACGG GGCGAGGCCA AATCGGGCTG CAACATCGGG 421 TTATTGGAAG GCTACCGGAA CCGACAAGCC GGTTTTTACT TCCGGTGGAA CACAAAAGGT 481 TGGGGTAAAA AAGGCGCTCG TTTTTTACGG CGGTAAACCA CCAAAAGGGG TAAAAACTAA 541 TTGGATCATG CGTGAATACA GAGTTGTAGA AAATAAAACA AATAACAAGC CACTTGGTTG 601 GGATAATATT GTTGCCAACA AAAAAAGATC TTTGAGGCTA GATGATTGCG TTTTATGTCG 661 AATTTACAAG Predicted gene structure (within gDNA segment 104427 to 101508): Exon 1 103827 103498 ( 330 n); cDNA 1 323 ( 323 n); score: 0.979 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 102869 102556 ( 314 n); cDNA 324 637 ( 314 n); score: 0.990 Intron 2 102555 101688 ( 868 n); Pd: 0.984 (s: 0.96), Pa: 0.993 (s: 0) Exon 3 101687 101655 ( 33 n); cDNA 638 670 ( 33 n); score: 0.970 MATCH C10SLe0045H11.1- SGN-E276804+ 0.984 677 1.010 C PGS_C10SLe0045H11.1-_SGN-E276804+ (103827 103498,102869 102556,101687 101655) Alignment (genomic DNA sequence = upper lines): TTTTCTCTCT TCCCAAAAAA AAATCCCAAA ATTTAATCAT AATACAATTC GAATTTATCA 103768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTCTCT TCCCAAAAAA AAATCCCAAA ATTTAATCAT AATACAATTC GAATTTATCA 60 ACCTCGTACT ACGTACATAT TTTTGTTGGT ACGTAAAATA CTGAATTCAG GTCAACTCAA 103708 ||||||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTCGTAC- ------ATAT TTTTGTTGGT ACGTAAAATA CTGAATTCAG GTCAACTCAA 113 ACATCGTAAA TTGTGATTTC TTTATGGAAA GTACGGATTC ATCAACCGGG ACACGTCATC 103648 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCGTAAA TTGTGATTTC TTTATGGAAA GTACGGATTC ATCAACCGGG ACACGTCATC 173 AGCCTCAACT CCCACCGGGG TTTCGATTCC ACCCGACGGA CGAAGAACTC ATCGTCCACT 103588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCTCAACT CCCACCGGGG TTTCGATTCC ACCCGACGGA CGAAGAACTC ATCGTCCACT 233 ACCTCAAAAA ACGAGTCGCC GGCGCTCCGA TTCCGGTGGA TATTATTGGT GAAATTGATC 103528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTCAAAAA ACGAGTCGCC GGCGCTCCGA TTCCGGTGGA TATTATTGGT GAAATTGATC 293 TTTATAAGTT TGATCCATGG GAACTCCCTG GTACTATTTT CACCACTATA CTATATTTTC 103468 |||||||||| |||||||||| |||||||||| TTTATAAGTT TGATCCATGG GAACTCCCTG .......... .......... .......... 323 TTGCCCTATA ACTTATATAT AGGGGAAAAA GATCGGAGTC AGCGATGAAC AATTATTGTG 103408 .......... .......... .......... .......... .......... .......... 323 TCTAAATTAA ATTTTAAATA TGCAATAGAT TGGTGACGAA TTTCGTTGCT AATTAATTTT 103348 .......... .......... .......... .......... .......... .......... 323 TTAGTGATAA ATTAATATTT TTCCCCTTTT TAATCTTCAT GTTTTTTATC ACAAAGTTTT 103288 .......... .......... .......... .......... .......... .......... 323 CTATGACCAA CTTATAAAGA TTTGAACTCG ATCAATTTTT TTTTTAGAAT GAATGAACTT 103228 .......... .......... .......... .......... .......... .......... 323 ATGTTATATA TAGTGATATT TTAAATGCTT TTTTATATTT TCAAAAGATA TCCACGATAA 103168 .......... .......... .......... .......... .......... .......... 323 CGTGTAAAAA GTGAATTTGC AAAAAAAAAA ATGTAGTACC TTTTATTTAA TTTTATTGTA 103108 .......... .......... .......... .......... .......... .......... 323 GATAATTTAG ATTTTAATTT TGAATTTGTT TAATTTAAAT TCTGAATCGT ATAATATTTA 103048 .......... .......... .......... .......... .......... .......... 323 TTTAATTTCT ATTTTTTGAG TTTTTTTTTG GAGGGTGCTT AAAAAGTAGT ATTCACAAAT 102988 .......... .......... .......... .......... .......... .......... 323 ATAAAGTAGT GGACAAACAT AAAGTAGTGG ACCCATAATT TATTTTTTTA AAAATTATAT 102928 .......... .......... .......... .......... .......... .......... 323 TAAAACTATT TGTTAAGTTT AAATTCTGAA TTATCTTCTT ATCATGTGTT TAACGCAGCT 102868 || .......... .......... .......... .......... .......... ........CT 325 AAGGCAATAT TCGGAGAGCA AGAATGGTTC TTTTTTAGTC CAAGAGATAG AAAATATCCT 102808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGCAATAT TCGGAGAGCA AGAATGGTTC TTTTTTAGTC CAAGAGATAG AAAATATCCT 385 AACGGGGCGA GGCCAAATCG GGCTGCAACA TCGGGTTATT GGAAGGCTAC CGGAACCGAC 102748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGGGGCGA GGCCAAATCG GGCTGCAACA TCGGGTTATT GGAAGGCTAC CGGAACCGAC 445 AAGCCGGTTT TTACTTCCGG TGGAACACAA AAGGTTGGGG TAAAAAAGGC GCTCGTTTTT 102688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCGGTTT TTACTTCCGG TGGAACACAA AAGGTTGGGG TAAAAAAGGC GCTCGTTTTT 505 TACGGCGGTA AACCACCAAA AGGGGTAAAA ACTAATTGGA TCATGCATGA ATACAGAGTT 102628 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| TACGGCGGTA AACCACCAAA AGGGGTAAAA ACTAATTGGA TCATGCGTGA ATACAGAGTT 565 GTAGAAAATA AAACAAATAA CAAGCCACTT GGTTGTGATA ATATTGTTGC CAACAAAAAA 102568 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| GTAGAAAATA AAACAAATAA CAAGCCACTT GGTTGGGATA ATATTGTTGC CAACAAAAAA 625 GGATCTTTGA GGGTAAGTCC TAAATTTTGC ATCGAAACTA ATTTCTCTAT CGTATCAGAT 102508 ||||||||| || AGATCTTTGA GG........ .......... .......... .......... .......... 637 AGGGATAAGA TATACGTATA CTCTAATCTC CTTGAACCCC ACAAGTACTA TACTAGATAT 102448 .......... .......... .......... .......... .......... .......... 637 GTTGTTGTTG TAGATGACTT GATTCAACTT TCAAATTTTT GATGAAAATG TTTAAGTTAT 102388 .......... .......... .......... .......... .......... .......... 637 ATATACATAT ATATATAGGC GGAGCTAAAA ATTTCGATAA GGGGGTTTAA ATCTGAAAAA 102328 .......... .......... .......... .......... .......... .......... 637 ATGGATATAC GAAATAGCCG AAAGAGGTTC GACATAGATT ATTTTAACCA TATAAAAATA 102268 .......... .......... .......... .......... .......... .......... 637 ATACAATTTT CATATATATA TACGCGTGGT TAATATGAGG AATATTTTAT ACTATTAATG 102208 .......... .......... .......... .......... .......... .......... 637 TACTTTAACC AGGGGCGGCT CTAGAGTTGA TGAACCCTCT CAGCGAAAAT TTACGTTGTA 102148 .......... .......... .......... .......... .......... .......... 637 TATTTAAGGT ACCTTTTAAT AATTTTTGTA TTTATATATT AATTTTGAAC CTCTTGAATA 102088 .......... .......... .......... .......... .......... .......... 637 TAAGATTAGA CGTTGACTTA GTGGTTTCAG GGGTTCAAAT CACTATTCTT TTTTTCCTAA 102028 .......... .......... .......... .......... .......... .......... 637 CCCCCTTAAT GAAAATCCTG AATCGGCCAC TAACTTTAAC TGGTTATAGA AGGTTAATCT 101968 .......... .......... .......... .......... .......... .......... 637 TACTAGAAAA AAGCATGAAA TTCTAACCGA CAAAGATGTA GTCGCCCAGT TAGATAAGAC 101908 .......... .......... .......... .......... .......... .......... 637 GTTTAAATTG GGACGGATAG AGTTACTTTA TTTTTCACTG TCATATGTTA CTATATATTG 101848 .......... .......... .......... .......... .......... .......... 637 ACACTTCACT TAAAGAGTTA TCATATCGAT ATTTTTACTA TTAGTGTACA TAACACAAAC 101788 .......... .......... .......... .......... .......... .......... 637 TCGAATAAAT TCAATGTTTC ATTAGCTAGT TAATTAGTCT AACTTTTTTA AAAAAAAATA 101728 .......... .......... .......... .......... .......... .......... 637 TTTTTCTTAC TCCACACTAT TTTATTTTAT TTTTTTGCAG CTAGATGATT GGGTTTTATG 101668 |||||||||| | |||||||| .......... .......... .......... .......... CTAGATGATT GCGTTTTATG 657 TCGAATTTAC AAG 101655 |||||||||| ||| TCGAATTTAC AAG 670 hqPGS_C10SLe0045H11.1-_SGN-E276804+ (103827 103498,102869 102556,101687 101655) ******************************************************************************** EST sequence 92 +strand 706 n (File: SGN-E328666+) 1 ATTTTTGTAC TACTAACTCA CAGCACACAC ACCATTTCTC TCTCTCTTCT AAGCTGAATT 61 TTCGTATCAT ACAATTTACT CTTTCTTTCT TTTTTTTTTA TTATTATTTT TATTATATAG 121 TTTTATAATC AGGTCGCTCT GATTAAATAT ATTTGAAAAT TTTTATCAAA TAATATTGTG 181 GTCATGGAGA GTACCGATTC ATCAACCGGC TCTCATCATC AACCACAATT GCCACCTGGA 241 TTTCGATTTC ATCCAACTGA TGAAGAGCTT GTGGTTCATT ATCTTAAGAA AAGAGTTGCC 301 TCTGTTCCTC TTCCTGTTTC TATTATTGCT GAAGTTGATC TTTACAAATT TGATCCTTGG 361 GAACTACCTG CTAAGGCGAC ATTTGGAGAA CAAGAATGGT ATTTCTTCAG TCCAAGAGAT 421 AGAAAATATC CTAACGGGGC GCGCCCAAAT AGGGCGGCAA CTTCCGGTTA TTGGAAGGCT 481 ACCGGAACCG ACAAGCCGGT GCTCACCGCC GGCGGGACCC AAAAAGTAGG TGTCAAAAAG 541 GCATTGGTGT TTTATGGTGG CAAACCACCC AAAGGGGTGA AGACAAATTG GATTATGCAT 601 GAATATAGGC TTGCTGATAA TAAAACAAAT AATAAGCCCC CTGGTTGTGA CCTTGCCAAT 661 AAAAAATCAC TAAGGCTAGA TGATTGGGTT TTATGTAGGA TTTACA Predicted gene structure (within gDNA segment 107511 to 100070): Exon 1 106095 106076 ( 20 n); cDNA 86 103 ( 18 n); score: 0.800 Intron 1 106075 105010 (1066 n); Pd: 0.969 (s: 0), Pa: 0.000 (s: 0) Exon 2 105009 104988 ( 22 n); cDNA 104 125 ( 22 n); score: 0.773 Intron 2 104987 104904 ( 84 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 104903 104852 ( 52 n); cDNA 126 176 ( 51 n); score: 0.644 Intron 3 104851 103692 (1160 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.76) Exon 4 103691 103498 ( 194 n); cDNA 177 370 ( 194 n); score: 0.753 Intron 4 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 5 102869 102588 ( 282 n); cDNA 371 652 ( 282 n); score: 0.826 Intron 5 102587 102370 ( 218 n); Pd: 0.000 (s: 0.78), Pa: 0.944 (s: 0) Exon 6 102369 102346 ( 24 n); cDNA 653 675 ( 23 n); score: 0.583 Intron 6 102345 101688 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0) Exon 7 101687 101657 ( 31 n); cDNA 676 706 ( 31 n); score: 0.935 MATCH C10SLe0045H11.1- SGN-E328666+ 0.781 625 0.885 C PGS_C10SLe0045H11.1-_SGN-E328666+ (106095 106076,105009 104988,104903 104852,103691 103498,102869 102588,102369 102346,101687 101657) Alignment (genomic DNA sequence = upper lines): TTGCTTTTTT CTTTAATTAG GTAAGTGCAA CATCCATAAA TATTTTTCAA GATATTTTTC 106036 || ||||||| ||| |||| TTTCTTTTTT TTTT-ATTA- .......... .......... .......... .......... 103 CGTAATTCAT TCACAATTTT TTTTAAAAGA ATTATTTAGT GTTTACCTGT TTACATTTAT 105976 .......... .......... .......... .......... .......... .......... 103 ATTGAAATTA ATTAAATTTA AAATCATAAT TAAGAGTGGA GAAATTTCAT TTATCAATAA 105916 .......... .......... .......... .......... .......... .......... 103 CCTAAATACT TAATTCTCCA ATGAAACTAA CTATAAGATT TTTCTCCCTA ATAATAGGTT 105856 .......... .......... .......... .......... .......... .......... 103 CATTTATTTT AGATTGGTCA TGTGAAGGAT ATGTGTTGAA ACAAATCCCT AAATTTCTTA 105796 .......... .......... .......... .......... .......... .......... 103 TTCTTGTTAA GTTTAAAAAT AAAAATGCTA AAAAAATTTT TTACAATGAA AGAATATTAT 105736 .......... .......... .......... .......... .......... .......... 103 AAAACTAATT AAATCCGTCC AAATTATATC ATACGTATCG CGAGGATTCA TCATAAATTG 105676 .......... .......... .......... .......... .......... .......... 103 ACTACTAGTC GTCGTATTTG TTGTCTCTAT CCGAGTTCAA GATCAACGAT ACTATATATA 105616 .......... .......... .......... .......... .......... .......... 103 AATACATCGA TAGAGACAAG TTGTTGTAAA AAAATTCCAA GTGTGACACT AGGCCAAATT 105556 .......... .......... .......... .......... .......... .......... 103 TGTCCAAAGA GTAGCCTAGA AATGCTTTCT TATCTTATTA TCTGTCTGTC GAGTCATGTC 105496 .......... .......... .......... .......... .......... .......... 103 AAACTTCTGT TGTAAAATTT AATCACTCCT AATTCGATAT TTCAAAATCG AGTTTTGCAA 105436 .......... .......... .......... .......... .......... .......... 103 ATTAAGAAAA TTTCATTGTA GGACGAGTTT CCTCTTTAAT TAAATGATTC ATATGAGCGC 105376 .......... .......... .......... .......... .......... .......... 103 CACGAATTCA ACTGAATATC AAATAAAATA CTGAATGATT GATATAGATC TCTTTATATA 105316 .......... .......... .......... .......... .......... .......... 103 TCTTGTGCAG GATAAAGTAG TTCTGCGTAT ATGCCCCTTT TACTCGATTG TCCACGTGTT 105256 .......... .......... .......... .......... .......... .......... 103 GGTACCAACT TGCATGCGTA TCGATTAATT ATATTGCCTA ATTTTCAGTT ATCAAGCTCT 105196 .......... .......... .......... .......... .......... .......... 103 AATTACATCA TTGTCATGTA TTAATCTAAT CACCTCTTCA ATTTATGCTA ATGACGACCT 105136 .......... .......... .......... .......... .......... .......... 103 CCACTTCTAA TTTAATATTA ACATATACAC TATTTATTTT TCCACTAACG ACTAATTTTT 105076 .......... .......... .......... .......... .......... .......... 103 TTAATTTTTT TTTGACAATA TTTATATAGT AATTTCTGCT AAGGTTAATT CTTAGTTTTT 105016 .......... .......... .......... .......... .......... .......... 103 ATCAACTCAT TTTTACTATA TATAATTAAT GTCCTTCTCA AAGCCTAATA ACGCCCATTT 104956 | || ||||| |||| || ||| ......TTAT TTTTATTATA TAGTTTTA.. .......... .......... .......... 125 TACGTTAAGT TAAACTGTTA GAATTGACGA AATTAGGATT AAATTTTAAA AAGAATCTTG 104896 |||| | .......... .......... .......... .......... .......... ..TAATCAGG 133 -AAATATGAT TTAAATATAT TCACAAAATT ATATCAGAAA AATAAATAAA AAATTTAAAA 104837 | ||| |||||||||| | ||| || ||||| || |||| TCGCTCTGA- TTAAATATAT TTGAAAATTT TTATCA-AAT AATAT..... .......... 176 TAAAATTGTG TAAGAAAAAA AGAATTGTTA TCGATTTTAA ATAAAAAAGA AAAAATAACA 104777 .......... .......... .......... .......... .......... .......... 176 TATATAAAAC GAAAAAAAAT ATATTTTTCT TAGTGAGTAG ATTTATCCAC ACTAGTAATT 104717 .......... .......... .......... .......... .......... .......... 176 GTGTGATTAT TGTAACATAT TATTCATTAG TCTAGGTACG AATTAATTGA CTCGAATATT 104657 .......... .......... .......... .......... .......... .......... 176 ATCGTCCTAA TAAAAAAAAT ATTCTTAATT TTGTTCTATT TTTTAATTAG CTTATTCCAA 104597 .......... .......... .......... .......... .......... .......... 176 AGTAAAAAAA ATCAAAGACA TGTTCTTATA TTTATGAACT TCTTAATTAA ACATTTATAA 104537 .......... .......... .......... .......... .......... .......... 176 TTACCACAAG AATCTCAAGA CATGTTTATA ATTAATAAAT TTAGATGTCT GTTTTTCTTT 104477 .......... .......... .......... .......... .......... .......... 176 CTAATTAAAT TAATATAATT TTACCTTTGA TAGCATATAT TTATAATTAC CATAGAATTC 104417 .......... .......... .......... .......... .......... .......... 176 AAAGCATGTT TACTGTTAGA TAAATTTAAA TATCTTCTAT ATTTTCTAAA ACCTTTGGCG 104357 .......... .......... .......... .......... .......... .......... 176 TCCAATTCGA TCAAAGTATG TCCACACAAT TCAATACTAC AAAAACTTTC TATATAAAGA 104297 .......... .......... .......... .......... .......... .......... 176 GAGATAATAG TCAAAATACA TCTGAAATGT TACGTTTTTT GTAAAATTTC TATTTAAATT 104237 .......... .......... .......... .......... .......... .......... 176 ATCACGTGCT CAATTTTTTT TACCTAAATC ATTATCAACT ATTTAACAAT ACACATCTCA 104177 .......... .......... .......... .......... .......... .......... 176 ATTATCAGTT ATTTTCTTTT TCTACTTGAA TACAGTAATA TTTCAGATAA AAAAAGAAAA 104117 .......... .......... .......... .......... .......... .......... 176 AGAGAAACAA TTGATAATTA TATTAACGCG TGATTTGATA AATAATTAAT GAGTTTATGT 104057 .......... .......... .......... .......... .......... .......... 176 ATAAAAAATG AACACCTCAT GGTTCAAAAA AAAATCTTGC AAAAATATAA TACTCTAGAT 103997 .......... .......... .......... .......... .......... .......... 176 ACTATTTTTT ACCATTAAAG TATATATTTC AATATATATA TATATATATA TATATATATA 103937 .......... .......... .......... .......... .......... .......... 176 TAAACAAAAA TATATGTAAT GGCATTACTG TAAATTCAGT GTTGCCTTAT ACCATATATA 103877 .......... .......... .......... .......... .......... .......... 176 AGTAAGTGTG GGGGCTAAAT TAACCAACTA AATTCCTTCT TGTTTATCAT TTTCTCTCTT 103817 .......... .......... .......... .......... .......... .......... 176 CCCAAAAAAA AATCCCAAAA TTTAATCATA ATACAATTCG AATTTATCAA CCTCGTACTA 103757 .......... .......... .......... .......... .......... .......... 176 CGTACATATT TTTGTTGGTA CGTAAAATAC TGAATTCAGG TCAACTCAAA CATCGTAAAT 103697 .......... .......... .......... .......... .......... .......... 176 TGTGATTTCT TTATGGAAAG TACGGATTCA TCAACCGGGA CACGTCATCA GCCTCAACTC 103637 | | | ||||| || ||| |||||| |||||||| | | |||||| || ||| | .....TGTGG TCATGGAGAG TACCGATTCA TCAACCGGCT CTCATCATCA ACCACAATTG 231 CCACCGGGGT TTCGATTCCA CCCGACGGAC GAAGAACTCA TCGTCCACTA CCTCAAAAAA 103577 ||||| || | ||||||| || || || || ||||| || | || || || || || ||| CCACCTGGAT TTCGATTTCA TCCAACTGAT GAAGAGCTTG TGGTTCATTA TCTTAAGAAA 291 CGAGTCGCCG GCGCTCCGAT TCCGGTGGAT ATTATTGGTG AAATTGATCT TTATAAGTTT 103517 |||| ||| | ||| | ||| || | ||||||| || || ||||||| ||| || ||| AGAGTTGCCT CTGTTCCTCT TCCTGTTTCT ATTATTGCTG AAGTTGATCT TTACAAATTT 351 GATCCATGGG AACTCCCTGG TACTATTTTC ACCACTATAC TATATTTTCT TGCCCTATAA 103457 ||||| |||| |||| |||| GATCCTTGGG AACTACCTG. .......... .......... .......... .......... 370 CTTATATATA GGGGAAAAAG ATCGGAGTCA GCGATGAACA ATTATTGTGT CTAAATTAAA 103397 .......... .......... .......... .......... .......... .......... 370 TTTTAAATAT GCAATAGATT GGTGACGAAT TTCGTTGCTA ATTAATTTTT TAGTGATAAA 103337 .......... .......... .......... .......... .......... .......... 370 TTAATATTTT TCCCCTTTTT AATCTTCATG TTTTTTATCA CAAAGTTTTC TATGACCAAC 103277 .......... .......... .......... .......... .......... .......... 370 TTATAAAGAT TTGAACTCGA TCAATTTTTT TTTTAGAATG AATGAACTTA TGTTATATAT 103217 .......... .......... .......... .......... .......... .......... 370 AGTGATATTT TAAATGCTTT TTTATATTTT CAAAAGATAT CCACGATAAC GTGTAAAAAG 103157 .......... .......... .......... .......... .......... .......... 370 TGAATTTGCA AAAAAAAAAA TGTAGTACCT TTTATTTAAT TTTATTGTAG ATAATTTAGA 103097 .......... .......... .......... .......... .......... .......... 370 TTTTAATTTT GAATTTGTTT AATTTAAATT CTGAATCGTA TAATATTTAT TTAATTTCTA 103037 .......... .......... .......... .......... .......... .......... 370 TTTTTTGAGT TTTTTTTTGG AGGGTGCTTA AAAAGTAGTA TTCACAAATA TAAAGTAGTG 102977 .......... .......... .......... .......... .......... .......... 370 GACAAACATA AAGTAGTGGA CCCATAATTT ATTTTTTTAA AAATTATATT AAAACTATTT 102917 .......... .......... .......... .......... .......... .......... 370 GTTAAGTTTA AATTCTGAAT TATCTTCTTA TCATGTGTTT AACGCAGCTA AGGCAATATT 102857 ||| |||| | ||| .......... .......... .......... .......... .......CTA AGGCGACATT 383 CGGAGAGCAA GAATGGTTCT TTTTTAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGAG 102797 ||||| ||| ||||||| | | || ||||| |||||||||| |||||||||| |||||||| | TGGAGAACAA GAATGGTATT TCTTCAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGCG 443 GCCAAATCGG GCTGCAACAT CGGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTTTT 102737 |||||| || || ||||| | | |||||||| |||||||||| |||||||||| ||||||| | CCCAAATAGG GCGGCAACTT CCGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTGCT 503 TACTTCCGGT GGAACACAAA AGGTTGGGGT AAAAAAGGCG CTCGTTTTTT ACGGCGGTAA 102677 || |||| || || |||| | || || || |||||||| | || |||| | || || || CACCGCCGGC GGGACCCAAA AAGTAGGTGT CAAAAAGGCA TTGGTGTTTT ATGGTGGCAA 563 ACCACCAAAA GGGGTAAAAA CTAATTGGAT CATGCATGAA TACAGAGTTG TAGAAAATAA 102617 |||||| ||| ||||| || | | |||||||| ||||||||| || || ||| || ||||| ACCACCCAAA GGGGTGAAGA CAAATTGGAT TATGCATGAA TATAGGCTTG CTGATAATAA 623 AACAAATAAC AAGCCACTTG GTTGTGATAA TATTGTTGCC AACAAAAAAG GATCTTTGAG 102557 ||||||||| ||||| | || ||||||| AACAAATAAT AAGCCCCCTG GTTGTGACC. .......... .......... .......... 652 GGTAAGTCCT AAATTTTGCA TCGAAACTAA TTTCTCTATC GTATCAGATA GGGATAAGAT 102497 .......... .......... .......... .......... .......... .......... 652 ATACGTATAC TCTAATCTCC TTGAACCCCA CAAGTACTAT ACTAGATATG TTGTTGTTGT 102437 .......... .......... .......... .......... .......... .......... 652 AGATGACTTG ATTCAACTTT CAAATTTTTG ATGAAAATGT TTAAGTTATA TATACATATA 102377 .......... .......... .......... .......... .......... .......... 652 TATATAGGCG GAGCTAAAAA TTTCGATAAG GGGGTTTAAA TCTGAAAAAA TGGATATACG 102317 | |||||| || |||| | .......TTG CCAATAAAAA -ATCACTAAG G......... .......... .......... 675 AAATAGCCGA AAGAGGTTCG ACATAGATTA TTTTAACCAT ATAAAAATAA TACAATTTTC 102257 .......... .......... .......... .......... .......... .......... 675 ATATATATAT ACGCGTGGTT AATATGAGGA ATATTTTATA CTATTAATGT ACTTTAACCA 102197 .......... .......... .......... .......... .......... .......... 675 GGGGCGGCTC TAGAGTTGAT GAACCCTCTC AGCGAAAATT TACGTTGTAT ATTTAAGGTA 102137 .......... .......... .......... .......... .......... .......... 675 CCTTTTAATA ATTTTTGTAT TTATATATTA ATTTTGAACC TCTTGAATAT AAGATTAGAC 102077 .......... .......... .......... .......... .......... .......... 675 GTTGACTTAG TGGTTTCAGG GGTTCAAATC ACTATTCTTT TTTTCCTAAC CCCCTTAATG 102017 .......... .......... .......... .......... .......... .......... 675 AAAATCCTGA ATCGGCCACT AACTTTAACT GGTTATAGAA GGTTAATCTT ACTAGAAAAA 101957 .......... .......... .......... .......... .......... .......... 675 AGCATGAAAT TCTAACCGAC AAAGATGTAG TCGCCCAGTT AGATAAGACG TTTAAATTGG 101897 .......... .......... .......... .......... .......... .......... 675 GACGGATAGA GTTACTTTAT TTTTCACTGT CATATGTTAC TATATATTGA CACTTCACTT 101837 .......... .......... .......... .......... .......... .......... 675 AAAGAGTTAT CATATCGATA TTTTTACTAT TAGTGTACAT AACACAAACT CGAATAAATT 101777 .......... .......... .......... .......... .......... .......... 675 CAATGTTTCA TTAGCTAGTT AATTAGTCTA ACTTTTTTAA AAAAAAATAT TTTTCTTACT 101717 .......... .......... .......... .......... .......... .......... 675 CCACACTATT TTATTTTATT TTTTTGCAGC TAGATGATTG GGTTTTATGT CGAATTTACA 101657 | |||||||||| |||||||||| | ||||||| .......... .......... .........C TAGATGATTG GGTTTTATGT AGGATTTACA 706 hqPGS_C10SLe0045H11.1-_SGN-E328666+ (105009 104988,104903 104852,103691 103498,102869 102588,102369 102346,101687 101657) ******************************************************************************** EST sequence 87 +strand 506 n (File: SGN-E204868+) 1 GATTCATCAA CCGGCTCTCA TCATCAACCA CAATTGCCAC CTGGATTTCG ATTTCATCCA 61 ACTGATGAAG AGCTTGTGGT TCATTATCTT AAGAAAAGAG TTGCCTCTGT TCCTCTTGCT 121 GTTTCTATTA TTGCTGCAGT TGATCTTTAC AAATTTGATC CTTGGGAACT ACCTGCTAAG 181 GCGACATTTG GAGAACAAGA ATGGTATTTC TTCAGTCCAA GAGATAGAAA ATATCCTAAC 241 GGGGCGCGCC CAAATAGGGC GGCAACTTCC GGTTATTGGA AGGCTACCGG AACCGACAAG 301 CCGGTGCTCA CCGCCGGCGG GACCCAAAAA GTAGGTGTCA AAAAGGCATT GGTGTTTTAT 361 GGTGGCAAAC CACCCAAAGG GGTGAAGACA AATTGGATTA TGCATGAATA TAGGCTTGCT 421 GATAATAAAA CAAATAATAA GCCCCCTGGT TGTGACCTTG CCAATAAAAA ATCACTAAGG 481 CTAGATGATT GGGTTTTATG TAGGAT Predicted gene structure (within gDNA segment 105561 to 100120): Exon 1 103672 103498 ( 175 n); cDNA 1 175 ( 175 n); score: 0.749 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 0.86), Pa: 0.995 (s: 0.84) Exon 2 102869 102588 ( 282 n); cDNA 176 457 ( 282 n); score: 0.826 Intron 2 102587 102370 ( 218 n); Pd: 0.000 (s: 0.78), Pa: 0.944 (s: 0) Exon 3 102369 102346 ( 24 n); cDNA 458 480 ( 23 n); score: 0.583 Intron 3 102345 101688 ( 658 n); Pd: 0.000 (s: 0), Pa: 0.993 (s: 0) Exon 4 101687 101662 ( 26 n); cDNA 481 506 ( 26 n); score: 0.923 MATCH C10SLe0045H11.1- SGN-E204868+ 0.796 507 1.002 C PGS_C10SLe0045H11.1-_SGN-E204868+ (103672 103498,102869 102588,102369 102346,101687 101662) Alignment (genomic DNA sequence = upper lines): GATTCATCAA CCGGGACACG TCATCAGCCT CAACTCCCAC CGGGGTTTCG ATTCCACCCG 103613 |||||||||| |||| | | |||||| || ||| | |||| | || ||||| ||| || || GATTCATCAA CCGGCTCTCA TCATCAACCA CAATTGCCAC CTGGATTTCG ATTTCATCCA 60 ACGGACGAAG AACTCATCGT CCACTACCTC AAAAAACGAG TCGCCGGCGC TCCGATTCCG 103553 || || |||| | || | || || || || || ||| ||| | ||| | ||| || | ACTGATGAAG AGCTTGTGGT TCATTATCTT AAGAAAAGAG TTGCCTCTGT TCCTCTTGCT 120 GTGGATATTA TTGGTGAAAT TGATCTTTAT AAGTTTGATC CATGGGAACT CCCTGGTACT 103493 || ||||| ||| || | | ||||||||| || ||||||| | |||||||| |||| GTTTCTATTA TTGCTGCAGT TGATCTTTAC AAATTTGATC CTTGGGAACT ACCTG..... 175 ATTTTCACCA CTATACTATA TTTTCTTGCC CTATAACTTA TATATAGGGG AAAAAGATCG 103433 .......... .......... .......... .......... .......... .......... 175 GAGTCAGCGA TGAACAATTA TTGTGTCTAA ATTAAATTTT AAATATGCAA TAGATTGGTG 103373 .......... .......... .......... .......... .......... .......... 175 ACGAATTTCG TTGCTAATTA ATTTTTTAGT GATAAATTAA TATTTTTCCC CTTTTTAATC 103313 .......... .......... .......... .......... .......... .......... 175 TTCATGTTTT TTATCACAAA GTTTTCTATG ACCAACTTAT AAAGATTTGA ACTCGATCAA 103253 .......... .......... .......... .......... .......... .......... 175 TTTTTTTTTT AGAATGAATG AACTTATGTT ATATATAGTG ATATTTTAAA TGCTTTTTTA 103193 .......... .......... .......... .......... .......... .......... 175 TATTTTCAAA AGATATCCAC GATAACGTGT AAAAAGTGAA TTTGCAAAAA AAAAAATGTA 103133 .......... .......... .......... .......... .......... .......... 175 GTACCTTTTA TTTAATTTTA TTGTAGATAA TTTAGATTTT AATTTTGAAT TTGTTTAATT 103073 .......... .......... .......... .......... .......... .......... 175 TAAATTCTGA ATCGTATAAT ATTTATTTAA TTTCTATTTT TTGAGTTTTT TTTTGGAGGG 103013 .......... .......... .......... .......... .......... .......... 175 TGCTTAAAAA GTAGTATTCA CAAATATAAA GTAGTGGACA AACATAAAGT AGTGGACCCA 102953 .......... .......... .......... .......... .......... .......... 175 TAATTTATTT TTTTAAAAAT TATATTAAAA CTATTTGTTA AGTTTAAATT CTGAATTATC 102893 .......... .......... .......... .......... .......... .......... 175 TTCTTATCAT GTGTTTAACG CAGCTAAGGC AATATTCGGA GAGCAAGAAT GGTTCTTTTT 102833 ||||||| | ||| ||| || ||||||| ||| || || .......... .......... ...CTAAGGC GACATTTGGA GAACAAGAAT GGTATTTCTT 212 TAGTCCAAGA GATAGAAAAT ATCCTAACGG GGCGAGGCCA AATCGGGCTG CAACATCGGG 102773 ||||||||| |||||||||| |||||||||| |||| | ||| ||| |||| | |||| || || CAGTCCAAGA GATAGAAAAT ATCCTAACGG GGCGCGCCCA AATAGGGCGG CAACTTCCGG 272 TTATTGGAAG GCTACCGGAA CCGACAAGCC GGTTTTTACT TCCGGTGGAA CACAAAAGGT 102713 |||||||||| |||||||||| |||||||||| ||| | || |||| || | | ||||| || TTATTGGAAG GCTACCGGAA CCGACAAGCC GGTGCTCACC GCCGGCGGGA CCCAAAAAGT 332 TGGGGTAAAA AAGGCGCTCG TTTTTTACGG CGGTAAACCA CCAAAAGGGG TAAAAACTAA 102653 || || ||| ||||| | | | ||||| || || |||||| || ||||||| | || || || AGGTGTCAAA AAGGCATTGG TGTTTTATGG TGGCAAACCA CCCAAAGGGG TGAAGACAAA 392 TTGGATCATG CATGAATACA GAGTTGTAGA AAATAAAACA AATAACAAGC CACTTGGTTG 102593 |||||| ||| |||||||| | | ||| || ||||||||| ||||| |||| | | |||||| TTGGATTATG CATGAATATA GGCTTGCTGA TAATAAAACA AATAATAAGC CCCCTGGTTG 452 TGATAATATT GTTGCCAACA AAAAAGGATC TTTGAGGGTA AGTCCTAAAT TTTGCATCGA 102533 ||| TGACC..... .......... .......... .......... .......... .......... 457 AACTAATTTC TCTATCGTAT CAGATAGGGA TAAGATATAC GTATACTCTA ATCTCCTTGA 102473 .......... .......... .......... .......... .......... .......... 457 ACCCCACAAG TACTATACTA GATATGTTGT TGTTGTAGAT GACTTGATTC AACTTTCAAA 102413 .......... .......... .......... .......... .......... .......... 457 TTTTTGATGA AAATGTTTAA GTTATATATA CATATATATA TAGGCGGAGC TAAAAATTTC 102353 | |||||| || .......... .......... .......... .......... ...TTGCCAA TAAAAA-ATC 473 GATAAGGGGG TTTAAATCTG AAAAAATGGA TATACGAAAT AGCCGAAAGA GGTTCGACAT 102293 ||||| ACTAAGG... .......... .......... .......... .......... .......... 480 AGATTATTTT AACCATATAA AAATAATACA ATTTTCATAT ATATATACGC GTGGTTAATA 102233 .......... .......... .......... .......... .......... .......... 480 TGAGGAATAT TTTATACTAT TAATGTACTT TAACCAGGGG CGGCTCTAGA GTTGATGAAC 102173 .......... .......... .......... .......... .......... .......... 480 CCTCTCAGCG AAAATTTACG TTGTATATTT AAGGTACCTT TTAATAATTT TTGTATTTAT 102113 .......... .......... .......... .......... .......... .......... 480 ATATTAATTT TGAACCTCTT GAATATAAGA TTAGACGTTG ACTTAGTGGT TTCAGGGGTT 102053 .......... .......... .......... .......... .......... .......... 480 CAAATCACTA TTCTTTTTTT CCTAACCCCC TTAATGAAAA TCCTGAATCG GCCACTAACT 101993 .......... .......... .......... .......... .......... .......... 480 TTAACTGGTT ATAGAAGGTT AATCTTACTA GAAAAAAGCA TGAAATTCTA ACCGACAAAG 101933 .......... .......... .......... .......... .......... .......... 480 ATGTAGTCGC CCAGTTAGAT AAGACGTTTA AATTGGGACG GATAGAGTTA CTTTATTTTT 101873 .......... .......... .......... .......... .......... .......... 480 CACTGTCATA TGTTACTATA TATTGACACT TCACTTAAAG AGTTATCATA TCGATATTTT 101813 .......... .......... .......... .......... .......... .......... 480 TACTATTAGT GTACATAACA CAAACTCGAA TAAATTCAAT GTTTCATTAG CTAGTTAATT 101753 .......... .......... .......... .......... .......... .......... 480 AGTCTAACTT TTTTAAAAAA AAATATTTTT CTTACTCCAC ACTATTTTAT TTTATTTTTT 101693 .......... .......... .......... .......... .......... .......... 480 TGCAGCTAGA TGATTGGGTT TTATGTCGAA T 101662 ||||| |||||||||| |||||| | | | .....CTAGA TGATTGGGTT TTATGTAGGA T 506 hqPGS_C10SLe0045H11.1-_SGN-E204868+ (103672 103498,102869 102588,102369 102346,101687 101662) ******************************************************************************** EST sequence 142 +strand 695 n (File: SGN-E391830+) 1 AACACACAAA GGTCCATAGA TGATTTGCAT GATATGTTGG GATCGATACC ACAAAATGTA 61 CCAAATTCAA TATTACAAGG AATAAAGCCT TCAAACTATG GTACAATATT GCTCGAAAAT 121 GAATCGAATA TGTACGATGG AATTATGAAT AACACGAACG ATATTATCAA CAATAATAAT 181 AGATCCATTC CACAAATATC GTCAAAGAGA ACGATGCATG GAGGTTTGTA TTGGAATAAC 241 GACGAAGCAA CAACAACAAC AACAACTATT GATAGGAACC ATTCTCCAAA TACAAAAAGG 301 TTCCTTGTTG AGAACAACGA GGACGATGGA CTTAACATGA ATAATATTTC GCGAATTACA 361 AATCATGAAC AAAGTAGCTC CATTGCCAAT TTCCTGAGCC AGTTTCCTCA AAATCCTTCG 421 ATTCAACAAC AACAACAACA ACAAGAAGAA GTATTGGGAT CTCTTAATGA TGGGGTCGTC 481 TTTCGACAAC CTTATAATCA AGTTACTGGC ATGAATTGGT ACTCTTAAAG ATATAAAAAG 541 GCAAAAAATA GTTAGCCCTG TAAAATCAAT CGATCAATCA ATCATAGATA TATTATATAT 601 GGATTTCGTT ATATTTTACT TTTAGTTAGA ATTAATATAT AGAATATCTT CTATCTCACA 661 TTAACAAATA GGAACATTTA TAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 102248 to 100119): Exon 1 101648 100954 ( 695 n); cDNA 1 695 ( 695 n); score: 0.991 MATCH C10SLe0045H11.1- SGN-E391830+ 0.991 695 1.000 C PGS_C10SLe0045H11.1-_SGN-E391830+ (101648 100954) Alignment (genomic DNA sequence = upper lines): AACACACAAA GGTCCATAGA TGATTTGCAT GATATGTTGG GATCGATACC ACAAAATGTA 101589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACACAAA GGTCCATAGA TGATTTGCAT GATATGTTGG GATCGATACC ACAAAATGTA 60 CCAAATTCAA TATTACAAGG AATAAAGCCT TCAAACTATG GTACAATATT GCTCGAAAAT 101529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAATTCAA TATTACAAGG AATAAAGCCT TCAAACTATG GTACAATATT GCTCGAAAAT 120 GAATCGAATA TGTACGATGG AATTATGAAT AACACGAACG ATATTATCAA CAATAATAAT 101469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCGAATA TGTACGATGG AATTATGAAT AACACGAACG ATATTATCAA CAATAATAAT 180 AGATCCATTC CACAAATATC GTCAAAGAGA ACGATGCATG GAGGTTTGTA TTGGAATAAC 101409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCCATTC CACAAATATC GTCAAAGAGA ACGATGCATG GAGGTTTGTA TTGGAATAAC 240 GACGAAGCAA CAACAACAAC AACAACTATT GATAGGAACC ATTCTCCAAA TACAAAAAGG 101349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGAAGCAA CAACAACAAC AACAACTATT GATAGGAACC ATTCTCCAAA TACAAAAAGG 300 TTCCTTGTTG AGAACAACGA GGACGATGGA CTTAACATGA ATAATATTTC GCGAATTACA 101289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTTGTTG AGAACAACGA GGACGATGGA CTTAACATGA ATAATATTTC GCGAATTACA 360 AATCATGAAC AAAGTAGCTC CATTGCCAAT TTCCTGAGCC AGTTTCCTCA AAATCCTTCG 101229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCATGAAC AAAGTAGCTC CATTGCCAAT TTCCTGAGCC AGTTTCCTCA AAATCCTTCG 420 ATTCAACAAC AACAACAACA ACAAGAAGAA GTATTGGGAT CTCTTAATGA TGGGGTCGTC 101169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCAACAAC AACAACAACA ACAAGAAGAA GTATTGGGAT CTCTTAATGA TGGGGTCGTC 480 TTTCGACAAC CTTATAATCA AGTTACTGGC ATGAATTGGT ACTCTTAAAG ATATAAAAAG 101109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCGACAAC CTTATAATCA AGTTACTGGC ATGAATTGGT ACTCTTAAAG ATATAAAAAG 540 GCAAAAAATA GTTAGCCCTG TAAAATCAAT CGATCAATCA ATCATAGATA TATTATATAT 101049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAAAATA GTTAGCCCTG TAAAATCAAT CGATCAATCA ATCATAGATA TATTATATAT 600 GGATTTCGTT ATATTTTACT TTTAGTTAGA ATTAATATAT AGAATATCTT CTATCTCACA 100989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTTCGTT ATATTTTACT TTTAGTTAGA ATTAATATAT AGAATATCTT CTATCTCACA 660 TTAACAAATA AGAACATTTA TAACAAATAG TGAAA 100954 |||||||||| ||||||||| ||| ||| | ||| TTAACAAATA GGAACATTTA TAAAAAAAAA AAAAA 695 hqPGS_C10SLe0045H11.1-_SGN-E391830+ (101648 100954) ******************************************************************************** EST sequence 32 -strand 695 n (File: SGN-E397883-) 1 AACACACAAA GGTCCATAGA TGATTTTGCA TGATATGTTG GGATCGATAC CACAAAATGT 61 ACCAAATTCA ATATTACAAG GAATAAAGCC TTCAAACTAT GGTACAATAT TGCTCGAAAA 121 TGAATCGAAT ATGTACGATG GAATTATGAA TAACACGAAC GATATTATCA ACAATAATAA 181 TAGATCCATT CCACAAATAT CGTCAAAGAG AACGATGCAT GGAGGTTTGT ATTGGAATAA 241 CGACGAAGCA ACAACAACAA CAACAACTAT TGATAGGAAC CATTCTCCAA ATACAAAAAG 301 GTTCCTTGTT GAGAACAACG AGGACGATGG ACTTAACATG AATAATATTT CGCGAATTAC 361 AAATCATGAA CAAAGTAGCT CCATTGCCAA TTTCCTGAGC CAGTTTCCTC AAAATCCTTC 421 GATTCAACAA CAACAACAAC AACAAGAAGA AGTATTGGGA TCTCTTAATG ATGGGGTCGT 481 CTTTCGACAA CCTTATAATC AAGTTACTGG CATGAATTGG TACTCTTAAA GATATAAAAA 541 GGCAAAAAAT AGTTAGCCCT GTAAAATCAA TCGATCAATC AATCATAGAT ATATTATATA 601 TGGATTTCGT TATATTTTAC TTTTAGTTAG AATTAATATA TAGAATATCT TCTATCTCAC 661 ATTAACAAAT AAGAACATTT ATAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 102258 to 100256): Exon 1 101648 100955 ( 694 n); cDNA 1 695 ( 695 n); score: 0.989 MATCH C10SLe0045H11.1- SGN-E397883- 0.989 694 0.999 C PGS_C10SLe0045H11.1-_SGN-E397883- (101648 100955) Alignment (genomic DNA sequence = upper lines): AACACACAAA GGTCCATAGA TGA-TTTGCA TGATATGTTG GGATCGATAC CACAAAATGT 101590 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| AACACACAAA GGTCCATAGA TGATTTTGCA TGATATGTTG GGATCGATAC CACAAAATGT 60 ACCAAATTCA ATATTACAAG GAATAAAGCC TTCAAACTAT GGTACAATAT TGCTCGAAAA 101530 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAAATTCA ATATTACAAG GAATAAAGCC TTCAAACTAT GGTACAATAT TGCTCGAAAA 120 TGAATCGAAT ATGTACGATG GAATTATGAA TAACACGAAC GATATTATCA ACAATAATAA 101470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATCGAAT ATGTACGATG GAATTATGAA TAACACGAAC GATATTATCA ACAATAATAA 180 TAGATCCATT CCACAAATAT CGTCAAAGAG AACGATGCAT GGAGGTTTGT ATTGGAATAA 101410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATCCATT CCACAAATAT CGTCAAAGAG AACGATGCAT GGAGGTTTGT ATTGGAATAA 240 CGACGAAGCA ACAACAACAA CAACAACTAT TGATAGGAAC CATTCTCCAA ATACAAAAAG 101350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACGAAGCA ACAACAACAA CAACAACTAT TGATAGGAAC CATTCTCCAA ATACAAAAAG 300 GTTCCTTGTT GAGAACAACG AGGACGATGG ACTTAACATG AATAATATTT CGCGAATTAC 101290 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCCTTGTT GAGAACAACG AGGACGATGG ACTTAACATG AATAATATTT CGCGAATTAC 360 AAATCATGAA CAAAGTAGCT CCATTGCCAA TTTCCTGAGC CAGTTTCCTC AAAATCCTTC 101230 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCATGAA CAAAGTAGCT CCATTGCCAA TTTCCTGAGC CAGTTTCCTC AAAATCCTTC 420 GATTCAACAA CAACAACAAC AACAAGAAGA AGTATTGGGA TCTCTTAATG ATGGGGTCGT 101170 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCAACAA CAACAACAAC AACAAGAAGA AGTATTGGGA TCTCTTAATG ATGGGGTCGT 480 CTTTCGACAA CCTTATAATC AAGTTACTGG CATGAATTGG TACTCTTAAA GATATAAAAA 101110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCGACAA CCTTATAATC AAGTTACTGG CATGAATTGG TACTCTTAAA GATATAAAAA 540 GGCAAAAAAT AGTTAGCCCT GTAAAATCAA TCGATCAATC AATCATAGAT ATATTATATA 101050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAAAAAAT AGTTAGCCCT GTAAAATCAA TCGATCAATC AATCATAGAT ATATTATATA 600 TGGATTTCGT TATATTTTAC TTTTAGTTAG AATTAATATA TAGAATATCT TCTATCTCAC 100990 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATTTCGT TATATTTTAC TTTTAGTTAG AATTAATATA TAGAATATCT TCTATCTCAC 660 ATTAACAAAT AAGAACATTT ATAACAAATA GTGAA 100955 |||||||||| |||||||||| |||| ||| | || ATTAACAAAT AAGAACATTT ATAAAAAAAA AAAAA 695 hqPGS_C10SLe0045H11.1-_SGN-E397883- (101648 100955) ******************************************************************************** EST sequence 44 -strand 461 n (File: SGN-E391829-) 1 GGAATAACGA CGAAGCAACA ACAACAACAA CAACTATTGA TAGGAACCAT TTTCCAAATA 61 CAAAAAGGTT CCTTGTTGAG AACAACGAGG ACGATGGACT TAACATGAAT AATATTTCGC 121 GAATTACAAA TCATGAACAA AGTAGCTCCA TTGCCAATTT CCTGAGCCAG TTTCCTCAAA 181 ATCCTTCGAT TCAACAACAA CAACAACAAC AAGAAGAAGT ATTGGGATCT CTTAATGATG 241 GGGTCGTCTT TCGACAACCT TATAATCAAG TTACTGGCAT GAATTGGTAC TCTTAAAGAT 301 ATAAAAAGGC AAAAAATAGT TAGCCCTGTA AAATCAATCG ATCAATCAAT CATAGATATA 361 TTATATATGG ATTTCGTTAT ATTTTACTTT TAGTTAGAAT TAATATATAG AATATCTTCT 421 ATCTCACATT AACAAATAAG AACATTTTAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 102026 to 100230): Exon 1 101416 100955 ( 462 n); cDNA 1 461 ( 461 n); score: 0.985 MATCH C10SLe0045H11.1- SGN-E391829- 0.985 462 1.002 C PGS_C10SLe0045H11.1-_SGN-E391829- (101416 100955) Alignment (genomic DNA sequence = upper lines): GGAATAACGA CGAAGCAACA ACAACAACAA CAACTATTGA TAGGAACCAT TCTCCAAATA 101357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| GGAATAACGA CGAAGCAACA ACAACAACAA CAACTATTGA TAGGAACCAT TTTCCAAATA 60 CAAAAAGGTT CCTTGTTGAG AACAACGAGG ACGATGGACT TAACATGAAT AATATTTCGC 101297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAAGGTT CCTTGTTGAG AACAACGAGG ACGATGGACT TAACATGAAT AATATTTCGC 120 GAATTACAAA TCATGAACAA AGTAGCTCCA TTGCCAATTT CCTGAGCCAG TTTCCTCAAA 101237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTACAAA TCATGAACAA AGTAGCTCCA TTGCCAATTT CCTGAGCCAG TTTCCTCAAA 180 ATCCTTCGAT TCAACAACAA CAACAACAAC AAGAAGAAGT ATTGGGATCT CTTAATGATG 101177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTTCGAT TCAACAACAA CAACAACAAC AAGAAGAAGT ATTGGGATCT CTTAATGATG 240 GGGTCGTCTT TCGACAACCT TATAATCAAG TTACTGGCAT GAATTGGTAC TCTTAAAGAT 101117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTCGTCTT TCGACAACCT TATAATCAAG TTACTGGCAT GAATTGGTAC TCTTAAAGAT 300 ATAAAAAGGC AAAAAATAGT TAGCCCTGTA AAATCAATCG ATCAATCAAT CATAGATATA 101057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAAAGGC AAAAAATAGT TAGCCCTGTA AAATCAATCG ATCAATCAAT CATAGATATA 360 TTATATATGG ATTTCGTTAT ATTTTACTTT TAGTTAGAAT TAATATATAG AATATCTTCT 100997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATATATGG ATTTCGTTAT ATTTTACTTT TAGTTAGAAT TAATATATAG AATATCTTCT 420 ATCTCACATT AACAAATAAG AACATTTATA ACAAATAGTG AA 100955 |||||||||| |||||||||| ||||||| || | ||| | || ATCTCACATT AACAAATAAG AACATTT-TA AAAAAAAAAA AA 461 hqPGS_C10SLe0045H11.1-_SGN-E391829- (101416 100955) ******************************************************************************** EST sequence 33 -strand 441 n (File: SGN-E392194-) 1 CAACAACAAC AACTATTGAT AGGAACCATT CTCCAAATAC AAAAAGGTTC CTTGTTGAGA 61 ACAACGAGGA CGATGGACTT AACATGAATA ATATTTCGCG AATTACAAAT CATGAACAAA 121 GTAGCTCCAT TGCCAATTTC CTGAGCCAGT TTCCTCAAAA TCCTTCGATT CAACAACAAC 181 AACAACAACA AGAAGAAGTA TTGGGATCTC TTAATGATGG GGTCGTCTTT CGACAACCTT 241 ATAATCAAGT TACTGGCATG AATTGGTACT CTTAAAGATA TAAAAAGGCA AAAAATAGTT 301 AGCCCTGTAA AATCAATCGA TCAATCAATC ATAGATATAT TATATATGGA TTTCGTTATA 361 TTTTACTTTT AGTTAGAATT AATATATAGA ATATCTTCTA TCTCACATTA ACAAATAAGA 421 ACATTTATAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 102005 to 100256): Exon 1 101395 100955 ( 441 n); cDNA 1 441 ( 441 n); score: 0.989 MATCH C10SLe0045H11.1- SGN-E392194- 0.989 441 1.000 C PGS_C10SLe0045H11.1-_SGN-E392194- (101395 100955) Alignment (genomic DNA sequence = upper lines): CAACAACAAC AACTATTGAT AGGAACCATT CTCCAAATAC AAAAAGGTTC CTTGTTGAGA 101336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAACAAC AACTATTGAT AGGAACCATT CTCCAAATAC AAAAAGGTTC CTTGTTGAGA 60 ACAACGAGGA CGATGGACTT AACATGAATA ATATTTCGCG AATTACAAAT CATGAACAAA 101276 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACGAGGA CGATGGACTT AACATGAATA ATATTTCGCG AATTACAAAT CATGAACAAA 120 GTAGCTCCAT TGCCAATTTC CTGAGCCAGT TTCCTCAAAA TCCTTCGATT CAACAACAAC 101216 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGCTCCAT TGCCAATTTC CTGAGCCAGT TTCCTCAAAA TCCTTCGATT CAACAACAAC 180 AACAACAACA AGAAGAAGTA TTGGGATCTC TTAATGATGG GGTCGTCTTT CGACAACCTT 101156 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAACAACA AGAAGAAGTA TTGGGATCTC TTAATGATGG GGTCGTCTTT CGACAACCTT 240 ATAATCAAGT TACTGGCATG AATTGGTACT CTTAAAGATA TAAAAAGGCA AAAAATAGTT 101096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATCAAGT TACTGGCATG AATTGGTACT CTTAAAGATA TAAAAAGGCA AAAAATAGTT 300 AGCCCTGTAA AATCAATCGA TCAATCAATC ATAGATATAT TATATATGGA TTTCGTTATA 101036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCCTGTAA AATCAATCGA TCAATCAATC ATAGATATAT TATATATGGA TTTCGTTATA 360 TTTTACTTTT AGTTAGAATT AATATATAGA ATATCTTCTA TCTCACATTA ACAAATAAGA 100976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTACTTTT AGTTAGAATT AATATATAGA ATATCTTCTA TCTCACATTA ACAAATAAGA 420 ACATTTATAA CAAATAGTGA A 100955 |||||||||| ||| | | | ACATTTATAA AAAAAAAAAA A 441 hqPGS_C10SLe0045H11.1-_SGN-E392194- (101395 100955) ******************************************************************************** EST sequence 43 -strand 262 n (File: SGN-E391888-) 1 CAACAACAAC AAGAAGAAGT ATTGGGATTT CTTAATGATG GGGTGGTCTT TCGACAACCT 61 TATAATCAAG TTAGTGGCAT GAATTGGTAC TCTTAAAGAT ATAAAAAGGC AAAAAATAGT 121 TAGCCCTGTA AAATCAATTG ATCAATCAAT CATAGATATA TTATATATGG ATTTCGTTAT 181 ATTTTACTTT TAGTTAGAAT AAATATATAG AATATCTTAT ATTTCACATT AACAAATAAG 241 AACATTTATC AAAAAAAAAA AA Predicted gene structure (within gDNA segment 101826 to 100238): Exon 1 101216 100955 ( 262 n); cDNA 1 262 ( 262 n); score: 0.950 MATCH C10SLe0045H11.1- SGN-E391888- 0.950 262 1.000 C PGS_C10SLe0045H11.1-_SGN-E391888- (101216 100955) Alignment (genomic DNA sequence = upper lines): CAACAACAAC AAGAAGAAGT ATTGGGATCT CTTAATGATG GGGTCGTCTT TCGACAACCT 101157 |||||||||| |||||||||| |||||||| | |||||||||| |||| ||||| |||||||||| CAACAACAAC AAGAAGAAGT ATTGGGATTT CTTAATGATG GGGTGGTCTT TCGACAACCT 60 TATAATCAAG TTACTGGCAT GAATTGGTAC TCTTAAAGAT ATAAAAAGGC AAAAAATAGT 101097 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TATAATCAAG TTAGTGGCAT GAATTGGTAC TCTTAAAGAT ATAAAAAGGC AAAAAATAGT 120 TAGCCCTGTA AAATCAATCG ATCAATCAAT CATAGATATA TTATATATGG ATTTCGTTAT 101037 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| TAGCCCTGTA AAATCAATTG ATCAATCAAT CATAGATATA TTATATATGG ATTTCGTTAT 180 ATTTTACTTT TAGTTAGAAT TAATATATAG AATATCTTCT ATCTCACATT AACAAATAAG 100977 |||||||||| |||||||||| ||||||||| |||||||| | || ||||||| |||||||||| ATTTTACTTT TAGTTAGAAT AAATATATAG AATATCTTAT ATTTCACATT AACAAATAAG 240 AACATTTATA ACAAATAGTG AA 100955 ||||||||| | ||| | || AACATTTATC AAAAAAAAAA AA 262 hqPGS_C10SLe0045H11.1-_SGN-E391888- (101216 100955) ******************************************************************************** EST sequence 132 +strand 548 n (File: SGN-E246704+) 1 ACACACAAAG GTCCATAGAT GATTTGCATG ATATGTTGGG ATCGATACCA CAAAATGTAC 61 CAAATTCAAT ATTACAAGGA ATAAAGCCTT CAAACTATGG TACAATATTG CTCGAAAATG 121 AATCGAATAT GTACGATGGA ATTATGAATA ACACGAACGA TATTATCAAC AATAATAATA 181 GATCCATTCC ACAAATATCG TCAAAGAGAA CGATGCATGG AGGTTTGTAT TGGAATAACG 241 ACGAAGCAAC AACAACAACA ACAACTATTG ATAGGAACCA TTCTCCAAAT ACAAAAAGGT 301 TCCTTGTTGA GAACAACGAG GACGATGGAC TTAACATGAA TAATATTTCG CGAATTACAA 361 ATCATGAACA AAGTAGCTCC ATTGCCAATT TCCTGAGCCA GTTTCCTCAA AATCCTTCGA 421 TTCAACAACA ACAACAACAA CAAGAAGAAG TATTGGGATC TCTTAATGAT GGGGTCGTCT 481 TTCGACAACC TTATAATCAA GTTACTGGCA TGAATTGGTA CTCTTAAAGA TATAAAAAGG 541 CAAAAAAT Predicted gene structure (within gDNA segment 102247 to 100490): Exon 1 101647 101100 ( 548 n); cDNA 1 548 ( 548 n); score: 1.000 MATCH C10SLe0045H11.1- SGN-E246704+ 1.000 548 1.000 C PGS_C10SLe0045H11.1-_SGN-E246704+ (101647 101100) Alignment (genomic DNA sequence = upper lines): ACACACAAAG GTCCATAGAT GATTTGCATG ATATGTTGGG ATCGATACCA CAAAATGTAC 101588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACACAAAG GTCCATAGAT GATTTGCATG ATATGTTGGG ATCGATACCA CAAAATGTAC 60 CAAATTCAAT ATTACAAGGA ATAAAGCCTT CAAACTATGG TACAATATTG CTCGAAAATG 101528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATTCAAT ATTACAAGGA ATAAAGCCTT CAAACTATGG TACAATATTG CTCGAAAATG 120 AATCGAATAT GTACGATGGA ATTATGAATA ACACGAACGA TATTATCAAC AATAATAATA 101468 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCGAATAT GTACGATGGA ATTATGAATA ACACGAACGA TATTATCAAC AATAATAATA 180 GATCCATTCC ACAAATATCG TCAAAGAGAA CGATGCATGG AGGTTTGTAT TGGAATAACG 101408 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCCATTCC ACAAATATCG TCAAAGAGAA CGATGCATGG AGGTTTGTAT TGGAATAACG 240 ACGAAGCAAC AACAACAACA ACAACTATTG ATAGGAACCA TTCTCCAAAT ACAAAAAGGT 101348 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGCAAC AACAACAACA ACAACTATTG ATAGGAACCA TTCTCCAAAT ACAAAAAGGT 300 TCCTTGTTGA GAACAACGAG GACGATGGAC TTAACATGAA TAATATTTCG CGAATTACAA 101288 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTTGTTGA GAACAACGAG GACGATGGAC TTAACATGAA TAATATTTCG CGAATTACAA 360 ATCATGAACA AAGTAGCTCC ATTGCCAATT TCCTGAGCCA GTTTCCTCAA AATCCTTCGA 101228 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATGAACA AAGTAGCTCC ATTGCCAATT TCCTGAGCCA GTTTCCTCAA AATCCTTCGA 420 TTCAACAACA ACAACAACAA CAAGAAGAAG TATTGGGATC TCTTAATGAT GGGGTCGTCT 101168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAACAACA ACAACAACAA CAAGAAGAAG TATTGGGATC TCTTAATGAT GGGGTCGTCT 480 TTCGACAACC TTATAATCAA GTTACTGGCA TGAATTGGTA CTCTTAAAGA TATAAAAAGG 101108 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGACAACC TTATAATCAA GTTACTGGCA TGAATTGGTA CTCTTAAAGA TATAAAAAGG 540 CAAAAAAT 101100 |||||||| CAAAAAAT 548 hqPGS_C10SLe0045H11.1-_SGN-E246704+ (101647 101100) ******************************************************************************** EST sequence 101 +strand 308 n (File: SGN-E392195+) 1 AACACACAAA GGTCCATAGA TGATTTGCAT GATATGTTGG GATCGATACC ACAAAATGTA 61 CCAAATTCAA TATTACAAGG AATAAAGCCT TCAAACTATG GTACAATATT GCTCGAAAAT 121 GAATCGAATA TGTACGATGG AATTATGAAT AACACGAACG ATATTATCAA CAATAATAAT 181 AGATCCATTC CACAAATATC GTCAAAGAGA ACGATGCATG GAGGTTTGTA TTGGAATAAC 241 GACGAAGCAA CAACAACAAC AACAACTATT GATAGGAACC ATTCTCCGGA GACTATTTTT 301 TTTTTTGT Predicted gene structure (within gDNA segment 102248 to 100542): Exon 1 101648 101341 ( 308 n); cDNA 1 308 ( 308 n); score: 0.964 MATCH C10SLe0045H11.1- SGN-E392195+ 0.964 308 1.000 C PGS_C10SLe0045H11.1-_SGN-E392195+ (101648 101341) Alignment (genomic DNA sequence = upper lines): AACACACAAA GGTCCATAGA TGATTTGCAT GATATGTTGG GATCGATACC ACAAAATGTA 101589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACACAAA GGTCCATAGA TGATTTGCAT GATATGTTGG GATCGATACC ACAAAATGTA 60 CCAAATTCAA TATTACAAGG AATAAAGCCT TCAAACTATG GTACAATATT GCTCGAAAAT 101529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAATTCAA TATTACAAGG AATAAAGCCT TCAAACTATG GTACAATATT GCTCGAAAAT 120 GAATCGAATA TGTACGATGG AATTATGAAT AACACGAACG ATATTATCAA CAATAATAAT 101469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCGAATA TGTACGATGG AATTATGAAT AACACGAACG ATATTATCAA CAATAATAAT 180 AGATCCATTC CACAAATATC GTCAAAGAGA ACGATGCATG GAGGTTTGTA TTGGAATAAC 101409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCCATTC CACAAATATC GTCAAAGAGA ACGATGCATG GAGGTTTGTA TTGGAATAAC 240 GACGAAGCAA CAACAACAAC AACAACTATT GATAGGAACC ATTCTCCAAA TACAAAAAGG 101349 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | || | GACGAAGCAA CAACAACAAC AACAACTATT GATAGGAACC ATTCTCCGGA GACTATTTTT 300 TTCCTTGT 101341 || |||| TTTTTTGT 308 hqPGS_C10SLe0045H11.1-_SGN-E392195+ (101648 101341) ******************************************************************************** EST sequence 150 +strand 647 n (File: SGN-E260313+) 1 TAAATTCCTT CTTGTTTATC ATTTTCTCTC TTCCCAAAAA AAAAATCCCA AAATTTAATC 61 ATAATACAAT TCGAATTTAT CAACCTCGTA CTACGTACAT ATTTTTGTTG GTACGTAAAA 121 TACTGAATTC AGGTCAACTC AAACATCGTA AATTGTGATT TCTTTATGGA AAGTACGGAT 181 TCATCAACCG GGACACGTCA TCAGCCTCAA CTCCCACCGG GGTTTCGATT CCACCCGACG 241 GACGAAGAAC TCATCGTCCA CTACCTCAAA AAACGAGTCG CCGGCGCTCC GATTCCGGTG 301 GATATTATTG GTGAAATTGA TCTTTATAAG TTTGATCCAT GGGAACTCCC TGCTAAGGCA 361 ATATTCGGAG AGCAAGAATG GTTCTTTTTT AGTCCAAGAG ATAGAAAATA TCCTAACGGG 421 GCGAGGCCAA ATCGGGCTGC AACATCGGGT TATTGGAAGG CTACCGGAAC CGACAAGCCG 481 GTTTTTACTT CCGGTGGAAC ACAAAAGGTT GGGGTAAAAA AGGCGCTCGT TTTTTACGGC 541 GGTAAACCAC CAAAAGGGGT AAAAACTAAT TGGATCATGC ATGAATACAG AGTTGTAGAA 601 AATAAAACNA ATAACAAGCC ACTTGGTTGT GATAATATTG TTGCCAA Predicted gene structure (within gDNA segment 104448 to 101965): Exon 1 103848 103498 ( 351 n); cDNA 1 352 ( 352 n); score: 0.993 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 102869 102575 ( 295 n); cDNA 353 647 ( 295 n); score: 0.997 MATCH C10SLe0045H11.1- SGN-E260313+ 0.995 646 0.998 C PGS_C10SLe0045H11.1-_SGN-E260313+ (103848 103498,102869 102575) Alignment (genomic DNA sequence = upper lines): TAAATTCCTT CTTGTTTATC ATTTTCTCTC TTCCC-AAAA AAAAATCCCA AAATTTAATC 103790 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TAAATTCCTT CTTGTTTATC ATTTTCTCTC TTCCCAAAAA AAAAATCCCA AAATTTAATC 60 ATAATACAAT TCGAATTTAT CAACCTCGTA CTACGTACAT ATTTTTGTTG GTACGTAAAA 103730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATACAAT TCGAATTTAT CAACCTCGTA CTACGTACAT ATTTTTGTTG GTACGTAAAA 120 TACTGAATTC AGGTCAACTC AAACATCGTA AATTGTGATT TCTTTATGGA AAGTACGGAT 103670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTGAATTC AGGTCAACTC AAACATCGTA AATTGTGATT TCTTTATGGA AAGTACGGAT 180 TCATCAACCG GGACACGTCA TCAGCCTCAA CTCCCACCGG GGTTTCGATT CCACCCGACG 103610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCAACCG GGACACGTCA TCAGCCTCAA CTCCCACCGG GGTTTCGATT CCACCCGACG 240 GACGAAGAAC TCATCGTCCA CTACCTCAAA AAACGAGTCG CCGGCGCTCC GATTCCGGTG 103550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGAAGAAC TCATCGTCCA CTACCTCAAA AAACGAGTCG CCGGCGCTCC GATTCCGGTG 300 GATATTATTG GTGAAATTGA TCTTTATAAG TTTGATCCAT GGGAACTCCC TGGTACTATT 103490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GATATTATTG GTGAAATTGA TCTTTATAAG TTTGATCCAT GGGAACTCCC TG........ 352 TTCACCACTA TACTATATTT TCTTGCCCTA TAACTTATAT ATAGGGGAAA AAGATCGGAG 103430 .......... .......... .......... .......... .......... .......... 352 TCAGCGATGA ACAATTATTG TGTCTAAATT AAATTTTAAA TATGCAATAG ATTGGTGACG 103370 .......... .......... .......... .......... .......... .......... 352 AATTTCGTTG CTAATTAATT TTTTAGTGAT AAATTAATAT TTTTCCCCTT TTTAATCTTC 103310 .......... .......... .......... .......... .......... .......... 352 ATGTTTTTTA TCACAAAGTT TTCTATGACC AACTTATAAA GATTTGAACT CGATCAATTT 103250 .......... .......... .......... .......... .......... .......... 352 TTTTTTTAGA ATGAATGAAC TTATGTTATA TATAGTGATA TTTTAAATGC TTTTTTATAT 103190 .......... .......... .......... .......... .......... .......... 352 TTTCAAAAGA TATCCACGAT AACGTGTAAA AAGTGAATTT GCAAAAAAAA AAATGTAGTA 103130 .......... .......... .......... .......... .......... .......... 352 CCTTTTATTT AATTTTATTG TAGATAATTT AGATTTTAAT TTTGAATTTG TTTAATTTAA 103070 .......... .......... .......... .......... .......... .......... 352 ATTCTGAATC GTATAATATT TATTTAATTT CTATTTTTTG AGTTTTTTTT TGGAGGGTGC 103010 .......... .......... .......... .......... .......... .......... 352 TTAAAAAGTA GTATTCACAA ATATAAAGTA GTGGACAAAC ATAAAGTAGT GGACCCATAA 102950 .......... .......... .......... .......... .......... .......... 352 TTTATTTTTT TAAAAATTAT ATTAAAACTA TTTGTTAAGT TTAAATTCTG AATTATCTTC 102890 .......... .......... .......... .......... .......... .......... 352 TTATCATGTG TTTAACGCAG CTAAGGCAAT ATTCGGAGAG CAAGAATGGT TCTTTTTTAG 102830 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... CTAAGGCAAT ATTCGGAGAG CAAGAATGGT TCTTTTTTAG 392 TCCAAGAGAT AGAAAATATC CTAACGGGGC GAGGCCAAAT CGGGCTGCAA CATCGGGTTA 102770 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAAGAGAT AGAAAATATC CTAACGGGGC GAGGCCAAAT CGGGCTGCAA CATCGGGTTA 452 TTGGAAGGCT ACCGGAACCG ACAAGCCGGT TTTTACTTCC GGTGGAACAC AAAAGGTTGG 102710 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAAGGCT ACCGGAACCG ACAAGCCGGT TTTTACTTCC GGTGGAACAC AAAAGGTTGG 512 GGTAAAAAAG GCGCTCGTTT TTTACGGCGG TAAACCACCA AAAGGGGTAA AAACTAATTG 102650 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAAAAAAG GCGCTCGTTT TTTACGGCGG TAAACCACCA AAAGGGGTAA AAACTAATTG 572 GATCATGCAT GAATACAGAG TTGTAGAAAA TAAAACAAAT AACAAGCCAC TTGGTTGTGA 102590 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| GATCATGCAT GAATACAGAG TTGTAGAAAA TAAAACNAAT AACAAGCCAC TTGGTTGTGA 632 TAATATTGTT GCCAA 102575 |||||||||| ||||| TAATATTGTT GCCAA 647 hqPGS_C10SLe0045H11.1-_SGN-E260313+ (103848 103498,102869 102575) ******************************************************************************** EST sequence 98 +strand 511 n (File: SGN-E271397+) 1 TTTTTATCAA ATAATATTGT GGTCATGGAG AGTACCGATT CATCAACCGG CTCTCATCAT 61 CAACCACAAT TGCCACCTGG ATTTCGATTT CATCCAACTG ATGAAGAGCT TGTGGTTCAT 121 TATCTTAAGA AAAGAGTTGC CTCTGTTCCT CTTCCTGTTT CTATTATTGC TGAAGTTGAT 181 CTTTACAAAT TTGATCCTTG GGAACTACCT GCTAAGGCGA CATTTGGAGA ACAAGAATGG 241 TATTTCTTCA GTCCAAGAGA TAGAAAATAT CCTAACGGGG CGCGCCCAAA TAGGGCGGCA 301 ACTTCCGGTT ATTGGAAGGC TACCGGAACC GACAAGCCGG TGCTCACCGC CGGCGGGACC 361 CAAAAAGTAG GTGTCAAAAA GGCATTGGTG TTTTATGGTG GCAAACCACC CAAAGGGGTG 421 AAGACAAATT GGATTATGCA TGAATATAGG CTTGCTGATA ATAAAACAAA TAATAAGCCC 481 CCTGGTTGTG ACCTTGCCAA TAAAAAATCA C Predicted gene structure (within gDNA segment 105921 to 100430): Exon 1 105006 104988 ( 19 n); cDNA 1 19 ( 19 n); score: 0.684 Intron 1 104987 103690 (1298 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.78) Exon 2 103689 103498 ( 192 n); cDNA 20 211 ( 192 n); score: 0.755 Intron 2 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 3 102869 102586 ( 284 n); cDNA 212 495 ( 284 n); score: 0.824 Intron 3 102585 102370 ( 216 n); Pd: 0.000 (s: 0.76), Pa: 0.944 (s: 0) Exon 4 102369 102356 ( 14 n); cDNA 496 508 ( 13 n); score: 0.643 MATCH C10SLe0045H11.1- SGN-E271397+ 0.796 509 0.996 C PGS_C10SLe0045H11.1-_SGN-E271397+ (105006 104988,103689 103498,102869 102586,102369 102356) Alignment (genomic DNA sequence = upper lines): TTTTTACTAT ATATAATTAA TGTCCTTCTC AAAGCCTAAT AACGCCCATT TTACGTTAAG 104947 |||||| | ||| ||| TTTTTATCAA ATAATATTG. .......... .......... .......... .......... 19 TTAAACTGTT AGAATTGACG AAATTAGGAT TAAATTTTAA AAAGAATCTT GAAATATGAT 104887 .......... .......... .......... .......... .......... .......... 19 TTAAATATAT TCACAAAATT ATATCAGAAA AATAAATAAA AAATTTAAAA TAAAATTGTG 104827 .......... .......... .......... .......... .......... .......... 19 TAAGAAAAAA AGAATTGTTA TCGATTTTAA ATAAAAAAGA AAAAATAACA TATATAAAAC 104767 .......... .......... .......... .......... .......... .......... 19 GAAAAAAAAT ATATTTTTCT TAGTGAGTAG ATTTATCCAC ACTAGTAATT GTGTGATTAT 104707 .......... .......... .......... .......... .......... .......... 19 TGTAACATAT TATTCATTAG TCTAGGTACG AATTAATTGA CTCGAATATT ATCGTCCTAA 104647 .......... .......... .......... .......... .......... .......... 19 TAAAAAAAAT ATTCTTAATT TTGTTCTATT TTTTAATTAG CTTATTCCAA AGTAAAAAAA 104587 .......... .......... .......... .......... .......... .......... 19 ATCAAAGACA TGTTCTTATA TTTATGAACT TCTTAATTAA ACATTTATAA TTACCACAAG 104527 .......... .......... .......... .......... .......... .......... 19 AATCTCAAGA CATGTTTATA ATTAATAAAT TTAGATGTCT GTTTTTCTTT CTAATTAAAT 104467 .......... .......... .......... .......... .......... .......... 19 TAATATAATT TTACCTTTGA TAGCATATAT TTATAATTAC CATAGAATTC AAAGCATGTT 104407 .......... .......... .......... .......... .......... .......... 19 TACTGTTAGA TAAATTTAAA TATCTTCTAT ATTTTCTAAA ACCTTTGGCG TCCAATTCGA 104347 .......... .......... .......... .......... .......... .......... 19 TCAAAGTATG TCCACACAAT TCAATACTAC AAAAACTTTC TATATAAAGA GAGATAATAG 104287 .......... .......... .......... .......... .......... .......... 19 TCAAAATACA TCTGAAATGT TACGTTTTTT GTAAAATTTC TATTTAAATT ATCACGTGCT 104227 .......... .......... .......... .......... .......... .......... 19 CAATTTTTTT TACCTAAATC ATTATCAACT ATTTAACAAT ACACATCTCA ATTATCAGTT 104167 .......... .......... .......... .......... .......... .......... 19 ATTTTCTTTT TCTACTTGAA TACAGTAATA TTTCAGATAA AAAAAGAAAA AGAGAAACAA 104107 .......... .......... .......... .......... .......... .......... 19 TTGATAATTA TATTAACGCG TGATTTGATA AATAATTAAT GAGTTTATGT ATAAAAAATG 104047 .......... .......... .......... .......... .......... .......... 19 AACACCTCAT GGTTCAAAAA AAAATCTTGC AAAAATATAA TACTCTAGAT ACTATTTTTT 103987 .......... .......... .......... .......... .......... .......... 19 ACCATTAAAG TATATATTTC AATATATATA TATATATATA TATATATATA TAAACAAAAA 103927 .......... .......... .......... .......... .......... .......... 19 TATATGTAAT GGCATTACTG TAAATTCAGT GTTGCCTTAT ACCATATATA AGTAAGTGTG 103867 .......... .......... .......... .......... .......... .......... 19 GGGGCTAAAT TAACCAACTA AATTCCTTCT TGTTTATCAT TTTCTCTCTT CCCAAAAAAA 103807 .......... .......... .......... .......... .......... .......... 19 AATCCCAAAA TTTAATCATA ATACAATTCG AATTTATCAA CCTCGTACTA CGTACATATT 103747 .......... .......... .......... .......... .......... .......... 19 TTTGTTGGTA CGTAAAATAC TGAATTCAGG TCAACTCAAA CATCGTAAAT TGTGATTTCT 103687 | .......... .......... .......... .......... .......... .......TGG 22 TTATGGAAAG TACGGATTCA TCAACCGGGA CACGTCATCA GCCTCAACTC CCACCGGGGT 103627 | ||||| || ||| |||||| |||||||| | | |||||| || ||| | ||||| || | TCATGGAGAG TACCGATTCA TCAACCGGCT CTCATCATCA ACCACAATTG CCACCTGGAT 82 TTCGATTCCA CCCGACGGAC GAAGAACTCA TCGTCCACTA CCTCAAAAAA CGAGTCGCCG 103567 ||||||| || || || || ||||| || | || || || || || ||| |||| ||| TTCGATTTCA TCCAACTGAT GAAGAGCTTG TGGTTCATTA TCTTAAGAAA AGAGTTGCCT 142 GCGCTCCGAT TCCGGTGGAT ATTATTGGTG AAATTGATCT TTATAAGTTT GATCCATGGG 103507 | ||| | ||| || | ||||||| || || ||||||| ||| || ||| ||||| |||| CTGTTCCTCT TCCTGTTTCT ATTATTGCTG AAGTTGATCT TTACAAATTT GATCCTTGGG 202 AACTCCCTGG TACTATTTTC ACCACTATAC TATATTTTCT TGCCCTATAA CTTATATATA 103447 |||| |||| AACTACCTG. .......... .......... .......... .......... .......... 211 GGGGAAAAAG ATCGGAGTCA GCGATGAACA ATTATTGTGT CTAAATTAAA TTTTAAATAT 103387 .......... .......... .......... .......... .......... .......... 211 GCAATAGATT GGTGACGAAT TTCGTTGCTA ATTAATTTTT TAGTGATAAA TTAATATTTT 103327 .......... .......... .......... .......... .......... .......... 211 TCCCCTTTTT AATCTTCATG TTTTTTATCA CAAAGTTTTC TATGACCAAC TTATAAAGAT 103267 .......... .......... .......... .......... .......... .......... 211 TTGAACTCGA TCAATTTTTT TTTTAGAATG AATGAACTTA TGTTATATAT AGTGATATTT 103207 .......... .......... .......... .......... .......... .......... 211 TAAATGCTTT TTTATATTTT CAAAAGATAT CCACGATAAC GTGTAAAAAG TGAATTTGCA 103147 .......... .......... .......... .......... .......... .......... 211 AAAAAAAAAA TGTAGTACCT TTTATTTAAT TTTATTGTAG ATAATTTAGA TTTTAATTTT 103087 .......... .......... .......... .......... .......... .......... 211 GAATTTGTTT AATTTAAATT CTGAATCGTA TAATATTTAT TTAATTTCTA TTTTTTGAGT 103027 .......... .......... .......... .......... .......... .......... 211 TTTTTTTTGG AGGGTGCTTA AAAAGTAGTA TTCACAAATA TAAAGTAGTG GACAAACATA 102967 .......... .......... .......... .......... .......... .......... 211 AAGTAGTGGA CCCATAATTT ATTTTTTTAA AAATTATATT AAAACTATTT GTTAAGTTTA 102907 .......... .......... .......... .......... .......... .......... 211 AATTCTGAAT TATCTTCTTA TCATGTGTTT AACGCAGCTA AGGCAATATT CGGAGAGCAA 102847 ||| |||| | ||| ||||| ||| .......... .......... .......... .......CTA AGGCGACATT TGGAGAACAA 234 GAATGGTTCT TTTTTAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGAG GCCAAATCGG 102787 ||||||| | | || ||||| |||||||||| |||||||||| |||||||| | |||||| || GAATGGTATT TCTTCAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGCG CCCAAATAGG 294 GCTGCAACAT CGGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTTTT TACTTCCGGT 102727 || ||||| | | |||||||| |||||||||| |||||||||| ||||||| | || |||| GCGGCAACTT CCGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTGCT CACCGCCGGC 354 GGAACACAAA AGGTTGGGGT AAAAAAGGCG CTCGTTTTTT ACGGCGGTAA ACCACCAAAA 102667 || || |||| | || || || |||||||| | || |||| | || || || |||||| ||| GGGACCCAAA AAGTAGGTGT CAAAAAGGCA TTGGTGTTTT ATGGTGGCAA ACCACCCAAA 414 GGGGTAAAAA CTAATTGGAT CATGCATGAA TACAGAGTTG TAGAAAATAA AACAAATAAC 102607 ||||| || | | |||||||| ||||||||| || || ||| || ||||| ||||||||| GGGGTGAAGA CAAATTGGAT TATGCATGAA TATAGGCTTG CTGATAATAA AACAAATAAT 474 AAGCCACTTG GTTGTGATAA TATTGTTGCC AACAAAAAAG GATCTTTGAG GGTAAGTCCT 102547 ||||| | || ||||||| | AAGCCCCCTG GTTGTGACCT T......... .......... .......... .......... 495 AAATTTTGCA TCGAAACTAA TTTCTCTATC GTATCAGATA GGGATAAGAT ATACGTATAC 102487 .......... .......... .......... .......... .......... .......... 495 TCTAATCTCC TTGAACCCCA CAAGTACTAT ACTAGATATG TTGTTGTTGT AGATGACTTG 102427 .......... .......... .......... .......... .......... .......... 495 ATTCAACTTT CAAATTTTTG ATGAAAATGT TTAAGTTATA TATACATATA TATATAGGCG 102367 || .......... .......... .......... .......... .......... .......GC- 497 GAGCTAAAAA T 102356 | ||||| | CAATAAAAAA T 508 hqPGS_C10SLe0045H11.1-_SGN-E271397+ (103689 103498,102869 102586) ******************************************************************************** EST sequence 145 +strand 611 n (File: SGN-E249267+) 1 TCTCTCTCTT CTAAGCTGAA TTTTCGTATC ATACAATTTA CTCTTTCTTT CTTTTTTTTT 61 TATTATTATT TTTATTATAT AGTTTTATAA TCAGGTCGCT CTGATTAAAT ATATTTGAAA 121 ATTTTTATCA AATAATATTG TGGTCATGGA GAGTACCGAT TCATCAACCG GCTCTCATCA 181 TCAACCACAA TTGCCACCTG GATTTCGATT TCATCCAACT GATGAAGAGC TTGTGGTTCA 241 TTATCTTAAG AAAAGAGTTG CCTCTGTTCC TCTTCCTGTT TCTATTATTG CTGAAGTTGA 301 TCTTTACAAA TTTGATCCTT GGGAACTACC TGCTAAGGCG ACATTTGGAG AACAAGAATG 361 GTATTTCTTC AGTCCAAGAG ATAGAAAATA TCCTAACGGG GCGCGCCCAA ATAGGGCGGC 421 AACTTCCGGT TATTGGAAGG CTACCGGAAC CGACAAGCCG GTGCTCACCG CCGGCGGGAC 481 CCAAAAAGTA GGTGTCAAAA AGGCATTGGT GTTTTATGGT GGCAAACCAC CCAAAGGGGT 541 GAAGACAAAT TGGATTATGC ATGAATATAG GCTTGCTGAT AATAAAACAA ATAATAAGCC 601 CCCTGGTTGT G Predicted gene structure (within gDNA segment 107131 to 100640): Exon 1 105304 105290 ( 15 n); cDNA 90 104 ( 15 n); score: 0.667 Intron 1 105289 104887 ( 403 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 104886 104852 ( 35 n); cDNA 105 138 ( 34 n); score: 0.771 Intron 2 104851 103692 (1160 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.76) Exon 3 103691 103498 ( 194 n); cDNA 139 332 ( 194 n); score: 0.753 Intron 3 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 4 102869 102591 ( 279 n); cDNA 333 611 ( 279 n); score: 0.832 MATCH C10SLe0045H11.1- SGN-E249267+ 0.799 523 0.856 C PGS_C10SLe0045H11.1-_SGN-E249267+ (105304 105290,104886 104852,103691 103498,102869 102591) Alignment (genomic DNA sequence = upper lines): ATAAAGTAGT TCTGCGTATA TGCCCCTTTT ACTCGATTGT CCACGTGTTG GTACCAACTT 105245 || | || | |||| ATCAGGTCGC TCTGA..... .......... .......... .......... .......... 104 GCATGCGTAT CGATTAATTA TATTGCCTAA TTTTCAGTTA TCAAGCTCTA ATTACATCAT 105185 .......... .......... .......... .......... .......... .......... 104 TGTCATGTAT TAATCTAATC ACCTCTTCAA TTTATGCTAA TGACGACCTC CACTTCTAAT 105125 .......... .......... .......... .......... .......... .......... 104 TTAATATTAA CATATACACT ATTTATTTTT CCACTAACGA CTAATTTTTT TAATTTTTTT 105065 .......... .......... .......... .......... .......... .......... 104 TTGACAATAT TTATATAGTA ATTTCTGCTA AGGTTAATTC TTAGTTTTTA TCAACTCATT 105005 .......... .......... .......... .......... .......... .......... 104 TTTACTATAT ATAATTAATG TCCTTCTCAA AGCCTAATAA CGCCCATTTT ACGTTAAGTT 104945 .......... .......... .......... .......... .......... .......... 104 AAACTGTTAG AATTGACGAA ATTAGGATTA AATTTTAAAA AGAATCTTGA AATATGATTT 104885 || .......... .......... .......... .......... .......... ........TT 106 AAATATATTC ACAAAATTAT ATCAGAAAAA TAAATAAAAA ATTTAAAATA AAATTGTGTA 104825 ||||||||| ||| || | |||| || || || AAATATATTT GAAAATTTTT ATCA-AATAA TAT....... .......... .......... 138 AGAAAAAAAG AATTGTTATC GATTTTAAAT AAAAAAGAAA AAATAACATA TATAAAACGA 104765 .......... .......... .......... .......... .......... .......... 138 AAAAAAATAT ATTTTTCTTA GTGAGTAGAT TTATCCACAC TAGTAATTGT GTGATTATTG 104705 .......... .......... .......... .......... .......... .......... 138 TAACATATTA TTCATTAGTC TAGGTACGAA TTAATTGACT CGAATATTAT CGTCCTAATA 104645 .......... .......... .......... .......... .......... .......... 138 AAAAAAATAT TCTTAATTTT GTTCTATTTT TTAATTAGCT TATTCCAAAG TAAAAAAAAT 104585 .......... .......... .......... .......... .......... .......... 138 CAAAGACATG TTCTTATATT TATGAACTTC TTAATTAAAC ATTTATAATT ACCACAAGAA 104525 .......... .......... .......... .......... .......... .......... 138 TCTCAAGACA TGTTTATAAT TAATAAATTT AGATGTCTGT TTTTCTTTCT AATTAAATTA 104465 .......... .......... .......... .......... .......... .......... 138 ATATAATTTT ACCTTTGATA GCATATATTT ATAATTACCA TAGAATTCAA AGCATGTTTA 104405 .......... .......... .......... .......... .......... .......... 138 CTGTTAGATA AATTTAAATA TCTTCTATAT TTTCTAAAAC CTTTGGCGTC CAATTCGATC 104345 .......... .......... .......... .......... .......... .......... 138 AAAGTATGTC CACACAATTC AATACTACAA AAACTTTCTA TATAAAGAGA GATAATAGTC 104285 .......... .......... .......... .......... .......... .......... 138 AAAATACATC TGAAATGTTA CGTTTTTTGT AAAATTTCTA TTTAAATTAT CACGTGCTCA 104225 .......... .......... .......... .......... .......... .......... 138 ATTTTTTTTA CCTAAATCAT TATCAACTAT TTAACAATAC ACATCTCAAT TATCAGTTAT 104165 .......... .......... .......... .......... .......... .......... 138 TTTCTTTTTC TACTTGAATA CAGTAATATT TCAGATAAAA AAAGAAAAAG AGAAACAATT 104105 .......... .......... .......... .......... .......... .......... 138 GATAATTATA TTAACGCGTG ATTTGATAAA TAATTAATGA GTTTATGTAT AAAAAATGAA 104045 .......... .......... .......... .......... .......... .......... 138 CACCTCATGG TTCAAAAAAA AATCTTGCAA AAATATAATA CTCTAGATAC TATTTTTTAC 103985 .......... .......... .......... .......... .......... .......... 138 CATTAAAGTA TATATTTCAA TATATATATA TATATATATA TATATATATA AACAAAAATA 103925 .......... .......... .......... .......... .......... .......... 138 TATGTAATGG CATTACTGTA AATTCAGTGT TGCCTTATAC CATATATAAG TAAGTGTGGG 103865 .......... .......... .......... .......... .......... .......... 138 GGCTAAATTA ACCAACTAAA TTCCTTCTTG TTTATCATTT TCTCTCTTCC CAAAAAAAAA 103805 .......... .......... .......... .......... .......... .......... 138 TCCCAAAATT TAATCATAAT ACAATTCGAA TTTATCAACC TCGTACTACG TACATATTTT 103745 .......... .......... .......... .......... .......... .......... 138 TGTTGGTACG TAAAATACTG AATTCAGGTC AACTCAAACA TCGTAAATTG TGATTTCTTT 103685 | | | .......... .......... .......... .......... .......... ...TGTGGTC 145 ATGGAAAGTA CGGATTCATC AACCGGGACA CGTCATCAGC CTCAACTCCC ACCGGGGTTT 103625 ||||| |||| | |||||||| |||||| | | |||||| | | ||| | || ||| || ||| ATGGAGAGTA CCGATTCATC AACCGGCTCT CATCATCAAC CACAATTGCC ACCTGGATTT 205 CGATTCCACC CGACGGACGA AGAACTCATC GTCCACTACC TCAAAAAACG AGTCGCCGGC 103565 ||||| || | | || || || ||| || | || || || | | || ||| | ||| ||| CGATTTCATC CAACTGATGA AGAGCTTGTG GTTCATTATC TTAAGAAAAG AGTTGCCTCT 265 GCTCCGATTC CGGTGGATAT TATTGGTGAA ATTGATCTTT ATAAGTTTGA TCCATGGGAA 103505 | ||| ||| | || ||| ||||| |||| ||||||||| | || ||||| ||| |||||| GTTCCTCTTC CTGTTTCTAT TATTGCTGAA GTTGATCTTT ACAAATTTGA TCCTTGGGAA 325 CTCCCTGGTA CTATTTTCAC CACTATACTA TATTTTCTTG CCCTATAACT TATATATAGG 103445 || |||| CTACCTG... .......... .......... .......... .......... .......... 332 GGAAAAAGAT CGGAGTCAGC GATGAACAAT TATTGTGTCT AAATTAAATT TTAAATATGC 103385 .......... .......... .......... .......... .......... .......... 332 AATAGATTGG TGACGAATTT CGTTGCTAAT TAATTTTTTA GTGATAAATT AATATTTTTC 103325 .......... .......... .......... .......... .......... .......... 332 CCCTTTTTAA TCTTCATGTT TTTTATCACA AAGTTTTCTA TGACCAACTT ATAAAGATTT 103265 .......... .......... .......... .......... .......... .......... 332 GAACTCGATC AATTTTTTTT TTAGAATGAA TGAACTTATG TTATATATAG TGATATTTTA 103205 .......... .......... .......... .......... .......... .......... 332 AATGCTTTTT TATATTTTCA AAAGATATCC ACGATAACGT GTAAAAAGTG AATTTGCAAA 103145 .......... .......... .......... .......... .......... .......... 332 AAAAAAAATG TAGTACCTTT TATTTAATTT TATTGTAGAT AATTTAGATT TTAATTTTGA 103085 .......... .......... .......... .......... .......... .......... 332 ATTTGTTTAA TTTAAATTCT GAATCGTATA ATATTTATTT AATTTCTATT TTTTGAGTTT 103025 .......... .......... .......... .......... .......... .......... 332 TTTTTTGGAG GGTGCTTAAA AAGTAGTATT CACAAATATA AAGTAGTGGA CAAACATAAA 102965 .......... .......... .......... .......... .......... .......... 332 GTAGTGGACC CATAATTTAT TTTTTTAAAA ATTATATTAA AACTATTTGT TAAGTTTAAA 102905 .......... .......... .......... .......... .......... .......... 332 TTCTGAATTA TCTTCTTATC ATGTGTTTAA CGCAGCTAAG GCAATATTCG GAGAGCAAGA 102845 ||||| || | ||| | |||| ||||| .......... .......... .......... .....CTAAG GCGACATTTG GAGAACAAGA 357 ATGGTTCTTT TTTAGTCCAA GAGATAGAAA ATATCCTAAC GGGGCGAGGC CAAATCGGGC 102785 ||||| || || ||||||| |||||||||| |||||||||| |||||| | | ||||| |||| ATGGTATTTC TTCAGTCCAA GAGATAGAAA ATATCCTAAC GGGGCGCGCC CAAATAGGGC 417 TGCAACATCG GGTTATTGGA AGGCTACCGG AACCGACAAG CCGGTTTTTA CTTCCGGTGG 102725 ||||| || |||||||||| |||||||||| |||||||||| ||||| | | | |||| || GGCAACTTCC GGTTATTGGA AGGCTACCGG AACCGACAAG CCGGTGCTCA CCGCCGGCGG 477 AACACAAAAG GTTGGGGTAA AAAAGGCGCT CGTTTTTTAC GGCGGTAAAC CACCAAAAGG 102665 || ||||| || || || | ||||||| | || ||||| || || |||| |||| ||||| GACCCAAAAA GTAGGTGTCA AAAAGGCATT GGTGTTTTAT GGTGGCAAAC CACCCAAAGG 537 GGTAAAAACT AATTGGATCA TGCATGAATA CAGAGTTGTA GAAAATAAAA CAAATAACAA 102605 ||| || || |||||||| | |||||||||| || ||| || ||||||| ||||||| || GGTGAAGACA AATTGGATTA TGCATGAATA TAGGCTTGCT GATAATAAAA CAAATAATAA 597 GCCACTTGGT TGTG 102591 ||| | |||| |||| GCCCCCTGGT TGTG 611 hqPGS_C10SLe0045H11.1-_SGN-E249267+ (104886 104852,103691 103498,102869 102591) ******************************************************************************** EST sequence 126 +strand 585 n (File: SGN-E206895+) 1 GCACACACAC CATTTCTCTC TCTCTTCTAA GCTGAATTTT CGTATCATAC AATTTACTCT 61 TTCTTTCTTT TTTTTTTATT ATTATTTTTA TTATATAGTT TTATAATCAG GTCGCTCTGA 121 TTAAATATAT TTGAAAATTT TTATCAAATA ATATTGTGGT CATGGAGAGT ACCGATTCAT 181 CAACCGGCTC TCATCATCAA CCACAATTGC CACCTGGATT TCGATTTCAT CCAACTGATG 241 AAGAGCTTGT GGTTCATTAT CTTAAGAAAA GAGTTGCCTC TGTTCCTCTT CCTGTTTCTA 301 TTATTGCTGA AGTTGATCTT TACAAATTTG ATCCTTGGGA ACTACCTGCT AAGGCGACAT 361 TTGGAGAACA AGAATGGTAT TTCTTCAGTC CAAGAGATAG AAAATATCCT AACGGGGCGC 421 GCCCAAATAG GGCGGCAACT TCCGGTTATT GGAAGGCTAC CGGAACCGAC AAGCCGGTGC 481 TCACCGCCGG CGGGACCCAA AAAGTAGGTG TCAAAAAGGC ATTGGTGTTT TATGGTGGCA 541 AACCACCCAA AGGGGTGAAG ACAAATTGGA TTATGCATGA ATATA Predicted gene structure (within gDNA segment 107291 to 101060): Exon 1 105007 104988 ( 20 n); cDNA 84 103 ( 20 n); score: 0.800 Intron 1 104987 104904 ( 84 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.64) Exon 2 104903 104852 ( 52 n); cDNA 104 154 ( 51 n); score: 0.644 Intron 2 104851 103692 (1160 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.76) Exon 3 103691 103498 ( 194 n); cDNA 155 348 ( 194 n); score: 0.753 Intron 3 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 4 102869 102635 ( 235 n); cDNA 349 583 ( 235 n); score: 0.838 MATCH C10SLe0045H11.1- SGN-E206895+ 0.783 501 0.856 C PGS_C10SLe0045H11.1-_SGN-E206895+ (105007 104988,104903 104852,103691 103498,102869 102635) Alignment (genomic DNA sequence = upper lines): ATTTTTACTA TATATAATTA ATGTCCTTCT CAAAGCCTAA TAACGCCCAT TTTACGTTAA 104948 ||||||| || |||| ||| ATTTTTATTA TATAGTTTTA .......... .......... .......... .......... 103 GTTAAACTGT TAGAATTGAC GAAATTAGGA TTAAATTTTA AAAAGAATCT TG-AAATATG 104889 |||| | | || .......... .......... .......... .......... ....TAATCA GGTCGCTCTG 119 ATTTAAATAT ATTCACAAAA TTATATCAGA AAAATAAATA AAAAATTTAA AATAAAATTG 104829 | |||||||| ||| ||| || ||||| | | |||| A-TTAAATAT ATTTGAAAAT TTTTATCA-A ATAATAT... .......... .......... 154 TGTAAGAAAA AAAGAATTGT TATCGATTTT AAATAAAAAA GAAAAAATAA CATATATAAA 104769 .......... .......... .......... .......... .......... .......... 154 ACGAAAAAAA ATATATTTTT CTTAGTGAGT AGATTTATCC ACACTAGTAA TTGTGTGATT 104709 .......... .......... .......... .......... .......... .......... 154 ATTGTAACAT ATTATTCATT AGTCTAGGTA CGAATTAATT GACTCGAATA TTATCGTCCT 104649 .......... .......... .......... .......... .......... .......... 154 AATAAAAAAA ATATTCTTAA TTTTGTTCTA TTTTTTAATT AGCTTATTCC AAAGTAAAAA 104589 .......... .......... .......... .......... .......... .......... 154 AAATCAAAGA CATGTTCTTA TATTTATGAA CTTCTTAATT AAACATTTAT AATTACCACA 104529 .......... .......... .......... .......... .......... .......... 154 AGAATCTCAA GACATGTTTA TAATTAATAA ATTTAGATGT CTGTTTTTCT TTCTAATTAA 104469 .......... .......... .......... .......... .......... .......... 154 ATTAATATAA TTTTACCTTT GATAGCATAT ATTTATAATT ACCATAGAAT TCAAAGCATG 104409 .......... .......... .......... .......... .......... .......... 154 TTTACTGTTA GATAAATTTA AATATCTTCT ATATTTTCTA AAACCTTTGG CGTCCAATTC 104349 .......... .......... .......... .......... .......... .......... 154 GATCAAAGTA TGTCCACACA ATTCAATACT ACAAAAACTT TCTATATAAA GAGAGATAAT 104289 .......... .......... .......... .......... .......... .......... 154 AGTCAAAATA CATCTGAAAT GTTACGTTTT TTGTAAAATT TCTATTTAAA TTATCACGTG 104229 .......... .......... .......... .......... .......... .......... 154 CTCAATTTTT TTTACCTAAA TCATTATCAA CTATTTAACA ATACACATCT CAATTATCAG 104169 .......... .......... .......... .......... .......... .......... 154 TTATTTTCTT TTTCTACTTG AATACAGTAA TATTTCAGAT AAAAAAAGAA AAAGAGAAAC 104109 .......... .......... .......... .......... .......... .......... 154 AATTGATAAT TATATTAACG CGTGATTTGA TAAATAATTA ATGAGTTTAT GTATAAAAAA 104049 .......... .......... .......... .......... .......... .......... 154 TGAACACCTC ATGGTTCAAA AAAAAATCTT GCAAAAATAT AATACTCTAG ATACTATTTT 103989 .......... .......... .......... .......... .......... .......... 154 TTACCATTAA AGTATATATT TCAATATATA TATATATATA TATATATATA TATAAACAAA 103929 .......... .......... .......... .......... .......... .......... 154 AATATATGTA ATGGCATTAC TGTAAATTCA GTGTTGCCTT ATACCATATA TAAGTAAGTG 103869 .......... .......... .......... .......... .......... .......... 154 TGGGGGCTAA ATTAACCAAC TAAATTCCTT CTTGTTTATC ATTTTCTCTC TTCCCAAAAA 103809 .......... .......... .......... .......... .......... .......... 154 AAAATCCCAA AATTTAATCA TAATACAATT CGAATTTATC AACCTCGTAC TACGTACATA 103749 .......... .......... .......... .......... .......... .......... 154 TTTTTGTTGG TACGTAAAAT ACTGAATTCA GGTCAACTCA AACATCGTAA ATTGTGATTT 103689 | | .......... .......... .......... .......... .......... .......TGT 157 CTTTATGGAA AGTACGGATT CATCAACCGG GACACGTCAT CAGCCTCAAC TCCCACCGGG 103629 | ||||| ||||| |||| |||||||||| | | |||| || || ||| | ||||| || GGTCATGGAG AGTACCGATT CATCAACCGG CTCTCATCAT CAACCACAAT TGCCACCTGG 217 GTTTCGATTC CACCCGACGG ACGAAGAACT CATCGTCCAC TACCTCAAAA AACGAGTCGC 103569 |||||||| || || || | | ||||| || | || || || || || | || |||| || ATTTCGATTT CATCCAACTG ATGAAGAGCT TGTGGTTCAT TATCTTAAGA AAAGAGTTGC 277 CGGCGCTCCG ATTCCGGTGG ATATTATTGG TGAAATTGAT CTTTATAAGT TTGATCCATG 103509 | | ||| |||| || |||||||| |||| ||||| ||||| || | ||||||| || CTCTGTTCCT CTTCCTGTTT CTATTATTGC TGAAGTTGAT CTTTACAAAT TTGATCCTTG 337 GGAACTCCCT GGTACTATTT TCACCACTAT ACTATATTTT CTTGCCCTAT AACTTATATA 103449 |||||| ||| | GGAACTACCT G......... .......... .......... .......... .......... 348 TAGGGGAAAA AGATCGGAGT CAGCGATGAA CAATTATTGT GTCTAAATTA AATTTTAAAT 103389 .......... .......... .......... .......... .......... .......... 348 ATGCAATAGA TTGGTGACGA ATTTCGTTGC TAATTAATTT TTTAGTGATA AATTAATATT 103329 .......... .......... .......... .......... .......... .......... 348 TTTCCCCTTT TTAATCTTCA TGTTTTTTAT CACAAAGTTT TCTATGACCA ACTTATAAAG 103269 .......... .......... .......... .......... .......... .......... 348 ATTTGAACTC GATCAATTTT TTTTTTAGAA TGAATGAACT TATGTTATAT ATAGTGATAT 103209 .......... .......... .......... .......... .......... .......... 348 TTTAAATGCT TTTTTATATT TTCAAAAGAT ATCCACGATA ACGTGTAAAA AGTGAATTTG 103149 .......... .......... .......... .......... .......... .......... 348 CAAAAAAAAA AATGTAGTAC CTTTTATTTA ATTTTATTGT AGATAATTTA GATTTTAATT 103089 .......... .......... .......... .......... .......... .......... 348 TTGAATTTGT TTAATTTAAA TTCTGAATCG TATAATATTT ATTTAATTTC TATTTTTTGA 103029 .......... .......... .......... .......... .......... .......... 348 GTTTTTTTTT GGAGGGTGCT TAAAAAGTAG TATTCACAAA TATAAAGTAG TGGACAAACA 102969 .......... .......... .......... .......... .......... .......... 348 TAAAGTAGTG GACCCATAAT TTATTTTTTT AAAAATTATA TTAAAACTAT TTGTTAAGTT 102909 .......... .......... .......... .......... .......... .......... 348 TAAATTCTGA ATTATCTTCT TATCATGTGT TTAACGCAGC TAAGGCAATA TTCGGAGAGC 102849 | |||||| | | || ||||| | .......... .......... .......... .........C TAAGGCGACA TTTGGAGAAC 369 AAGAATGGTT CTTTTTTAGT CCAAGAGATA GAAAATATCC TAACGGGGCG AGGCCAAATC 102789 ||||||||| || || ||| |||||||||| |||||||||| |||||||||| | |||||| AAGAATGGTA TTTCTTCAGT CCAAGAGATA GAAAATATCC TAACGGGGCG CGCCCAAATA 429 GGGCTGCAAC ATCGGGTTAT TGGAAGGCTA CCGGAACCGA CAAGCCGGTT TTTACTTCCG 102729 |||| ||||| || |||||| |||||||||| |||||||||| ||||||||| | || ||| GGGCGGCAAC TTCCGGTTAT TGGAAGGCTA CCGGAACCGA CAAGCCGGTG CTCACCGCCG 489 GTGGAACACA AAAGGTTGGG GTAAAAAAGG CGCTCGTTTT TTACGGCGGT AAACCACCAA 102669 | || || || ||| || || || ||||||| | | || || ||| || || |||||||| | GCGGGACCCA AAAAGTAGGT GTCAAAAAGG CATTGGTGTT TTATGGTGGC AAACCACCCA 549 AAGGGGTAAA AACTAATTGG ATCATGCATG AATA 102635 ||||||| || || |||||| || ||||||| |||| AAGGGGTGAA GACAAATTGG ATTATGCATG AATA 583 hqPGS_C10SLe0045H11.1-_SGN-E206895+ (103691 103498,102869 102635) ******************************************************************************** EST sequence 118 +strand 507 n (File: SGN-E276640+) 1 TTTTCTCTCT TCCCAAAAAA AAATCCCAAA ATTTAATCAT AATACAATTC GAATTTATCA 61 ACCTCGTACA TATTTTTGTT GGTACGTAAA ATACTGAATT CAGGTCAACT CAAACATCGT 121 AAATTGTGAT TTCTTTATGG AAAGTACGGA TTCATCAACC GGGACACGTC ATCAGCCTCA 181 ACTCCCACCG GGGTTTCGAT TCCACCCGAC GGACGAAGAA CTCATCGTCC ACTACCTCAA 241 AAAACGAGTC GCCGGCGCTC CGATTCCGGT GGATATTATT GGTGAAATTG ATCTTTATAA 301 GTTTGATCCA TGGGAACTCC CTGCTAAGGC AATATTCGGA GAGCAAGAAT GGTTCTTTTT 361 TAGTCCAAGA GATAGAAAAT ATCCTAACGG GGCGAGGCCA AATCGGGCTG CAACATCGGG 421 TTATTGGAAG GCTACCGGAA CCGACAAGCC GGTTTTTACT TCCGGCGGAA CACAAAAGGT 481 TGGGGTAAAA AAGGCGCTCG TTTTTTA Predicted gene structure (within gDNA segment 104427 to 102076): Exon 1 103827 103498 ( 330 n); cDNA 1 323 ( 323 n); score: 0.979 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 102869 102686 ( 184 n); cDNA 324 507 ( 184 n); score: 0.995 MATCH C10SLe0045H11.1- SGN-E276640+ 0.984 514 1.014 C PGS_C10SLe0045H11.1-_SGN-E276640+ (103827 103498,102869 102686) Alignment (genomic DNA sequence = upper lines): TTTTCTCTCT TCCCAAAAAA AAATCCCAAA ATTTAATCAT AATACAATTC GAATTTATCA 103768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTCTCT TCCCAAAAAA AAATCCCAAA ATTTAATCAT AATACAATTC GAATTTATCA 60 ACCTCGTACT ACGTACATAT TTTTGTTGGT ACGTAAAATA CTGAATTCAG GTCAACTCAA 103708 ||||||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTCGTAC- ------ATAT TTTTGTTGGT ACGTAAAATA CTGAATTCAG GTCAACTCAA 113 ACATCGTAAA TTGTGATTTC TTTATGGAAA GTACGGATTC ATCAACCGGG ACACGTCATC 103648 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCGTAAA TTGTGATTTC TTTATGGAAA GTACGGATTC ATCAACCGGG ACACGTCATC 173 AGCCTCAACT CCCACCGGGG TTTCGATTCC ACCCGACGGA CGAAGAACTC ATCGTCCACT 103588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCTCAACT CCCACCGGGG TTTCGATTCC ACCCGACGGA CGAAGAACTC ATCGTCCACT 233 ACCTCAAAAA ACGAGTCGCC GGCGCTCCGA TTCCGGTGGA TATTATTGGT GAAATTGATC 103528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTCAAAAA ACGAGTCGCC GGCGCTCCGA TTCCGGTGGA TATTATTGGT GAAATTGATC 293 TTTATAAGTT TGATCCATGG GAACTCCCTG GTACTATTTT CACCACTATA CTATATTTTC 103468 |||||||||| |||||||||| |||||||||| TTTATAAGTT TGATCCATGG GAACTCCCTG .......... .......... .......... 323 TTGCCCTATA ACTTATATAT AGGGGAAAAA GATCGGAGTC AGCGATGAAC AATTATTGTG 103408 .......... .......... .......... .......... .......... .......... 323 TCTAAATTAA ATTTTAAATA TGCAATAGAT TGGTGACGAA TTTCGTTGCT AATTAATTTT 103348 .......... .......... .......... .......... .......... .......... 323 TTAGTGATAA ATTAATATTT TTCCCCTTTT TAATCTTCAT GTTTTTTATC ACAAAGTTTT 103288 .......... .......... .......... .......... .......... .......... 323 CTATGACCAA CTTATAAAGA TTTGAACTCG ATCAATTTTT TTTTTAGAAT GAATGAACTT 103228 .......... .......... .......... .......... .......... .......... 323 ATGTTATATA TAGTGATATT TTAAATGCTT TTTTATATTT TCAAAAGATA TCCACGATAA 103168 .......... .......... .......... .......... .......... .......... 323 CGTGTAAAAA GTGAATTTGC AAAAAAAAAA ATGTAGTACC TTTTATTTAA TTTTATTGTA 103108 .......... .......... .......... .......... .......... .......... 323 GATAATTTAG ATTTTAATTT TGAATTTGTT TAATTTAAAT TCTGAATCGT ATAATATTTA 103048 .......... .......... .......... .......... .......... .......... 323 TTTAATTTCT ATTTTTTGAG TTTTTTTTTG GAGGGTGCTT AAAAAGTAGT ATTCACAAAT 102988 .......... .......... .......... .......... .......... .......... 323 ATAAAGTAGT GGACAAACAT AAAGTAGTGG ACCCATAATT TATTTTTTTA AAAATTATAT 102928 .......... .......... .......... .......... .......... .......... 323 TAAAACTATT TGTTAAGTTT AAATTCTGAA TTATCTTCTT ATCATGTGTT TAACGCAGCT 102868 || .......... .......... .......... .......... .......... ........CT 325 AAGGCAATAT TCGGAGAGCA AGAATGGTTC TTTTTTAGTC CAAGAGATAG AAAATATCCT 102808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGCAATAT TCGGAGAGCA AGAATGGTTC TTTTTTAGTC CAAGAGATAG AAAATATCCT 385 AACGGGGCGA GGCCAAATCG GGCTGCAACA TCGGGTTATT GGAAGGCTAC CGGAACCGAC 102748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGGGGCGA GGCCAAATCG GGCTGCAACA TCGGGTTATT GGAAGGCTAC CGGAACCGAC 445 AAGCCGGTTT TTACTTCCGG TGGAACACAA AAGGTTGGGG TAAAAAAGGC GCTCGTTTTT 102688 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AAGCCGGTTT TTACTTCCGG CGGAACACAA AAGGTTGGGG TAAAAAAGGC GCTCGTTTTT 505 TA 102686 || TA 507 hqPGS_C10SLe0045H11.1-_SGN-E276640+ (103827 103498,102869 102686) ******************************************************************************** EST sequence 116 +strand 563 n (File: SGN-E256826+) 1 TGATTTTCTG TATTTTTGTA CTACTAACTC ACAGCACACA CACCATTTCT CTCTCTCTTC 61 TAAGCTGAAT TTTCGTATCA TACAATTTAC TGTTTCTTTC TTTTTTTTTT ATTATTATTT 121 TTATTATATA GTTTTATAAT CAGGTCGCTC TGATTAAATA TATTTGAAAA TTTTTATCAA 181 ATAATATTGT GGTCATGGAG AGTACCGATT CATCAACCGG CTCTCATCAT CAACCACAAT 241 TGCCACCTGG ATTTCGATTT CATCCAACTG ATGAAGAGCT TGTGGTTCAT TATCTTAAGA 301 AAAGAGTTGC CTCTGTTCCT CTTCCTGTTT CTATTATTGC TGAAGTTGAT CTTTACAAAT 361 TTGATCCTTG GGAACTACCT GCTAAGGCGA CATTTGGAGA ACAAGAATGG TATTTCTTCA 421 GTCCAAGAGA TAGAAAATAT CCTAACGGGG CGCGCCCAAA TAGGGCGGCA ACTTCCGGTT 481 ATTGGAAGGC TACCGGAACC GACAAGCCGG TGCTCACCGC CGGCGGGACC CAAAAAGTAA 541 GTGTCAAAAA GGCATTGGTG TTT Predicted gene structure (within gDNA segment 107621 to 101610): Exon 1 106095 106076 ( 20 n); cDNA 97 114 ( 18 n); score: 0.800 Intron 1 106075 105010 (1066 n); Pd: 0.969 (s: 0), Pa: 0.000 (s: 0) Exon 2 105009 104988 ( 22 n); cDNA 115 136 ( 22 n); score: 0.773 Intron 2 104987 104904 ( 84 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 104903 104852 ( 52 n); cDNA 137 187 ( 51 n); score: 0.644 Intron 3 104851 103692 (1160 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.76) Exon 4 103691 103498 ( 194 n); cDNA 188 381 ( 194 n); score: 0.753 Intron 4 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 5 102869 102688 ( 182 n); cDNA 382 563 ( 182 n); score: 0.830 MATCH C10SLe0045H11.1- SGN-E256826+ 0.772 470 0.835 C PGS_C10SLe0045H11.1-_SGN-E256826+ (106095 106076,105009 104988,104903 104852,103691 103498,102869 102688) Alignment (genomic DNA sequence = upper lines): TTGCTTTTTT CTTTAATTAG GTAAGTGCAA CATCCATAAA TATTTTTCAA GATATTTTTC 106036 || ||||||| ||| |||| TTTCTTTTTT TTTT-ATTA- .......... .......... .......... .......... 114 CGTAATTCAT TCACAATTTT TTTTAAAAGA ATTATTTAGT GTTTACCTGT TTACATTTAT 105976 .......... .......... .......... .......... .......... .......... 114 ATTGAAATTA ATTAAATTTA AAATCATAAT TAAGAGTGGA GAAATTTCAT TTATCAATAA 105916 .......... .......... .......... .......... .......... .......... 114 CCTAAATACT TAATTCTCCA ATGAAACTAA CTATAAGATT TTTCTCCCTA ATAATAGGTT 105856 .......... .......... .......... .......... .......... .......... 114 CATTTATTTT AGATTGGTCA TGTGAAGGAT ATGTGTTGAA ACAAATCCCT AAATTTCTTA 105796 .......... .......... .......... .......... .......... .......... 114 TTCTTGTTAA GTTTAAAAAT AAAAATGCTA AAAAAATTTT TTACAATGAA AGAATATTAT 105736 .......... .......... .......... .......... .......... .......... 114 AAAACTAATT AAATCCGTCC AAATTATATC ATACGTATCG CGAGGATTCA TCATAAATTG 105676 .......... .......... .......... .......... .......... .......... 114 ACTACTAGTC GTCGTATTTG TTGTCTCTAT CCGAGTTCAA GATCAACGAT ACTATATATA 105616 .......... .......... .......... .......... .......... .......... 114 AATACATCGA TAGAGACAAG TTGTTGTAAA AAAATTCCAA GTGTGACACT AGGCCAAATT 105556 .......... .......... .......... .......... .......... .......... 114 TGTCCAAAGA GTAGCCTAGA AATGCTTTCT TATCTTATTA TCTGTCTGTC GAGTCATGTC 105496 .......... .......... .......... .......... .......... .......... 114 AAACTTCTGT TGTAAAATTT AATCACTCCT AATTCGATAT TTCAAAATCG AGTTTTGCAA 105436 .......... .......... .......... .......... .......... .......... 114 ATTAAGAAAA TTTCATTGTA GGACGAGTTT CCTCTTTAAT TAAATGATTC ATATGAGCGC 105376 .......... .......... .......... .......... .......... .......... 114 CACGAATTCA ACTGAATATC AAATAAAATA CTGAATGATT GATATAGATC TCTTTATATA 105316 .......... .......... .......... .......... .......... .......... 114 TCTTGTGCAG GATAAAGTAG TTCTGCGTAT ATGCCCCTTT TACTCGATTG TCCACGTGTT 105256 .......... .......... .......... .......... .......... .......... 114 GGTACCAACT TGCATGCGTA TCGATTAATT ATATTGCCTA ATTTTCAGTT ATCAAGCTCT 105196 .......... .......... .......... .......... .......... .......... 114 AATTACATCA TTGTCATGTA TTAATCTAAT CACCTCTTCA ATTTATGCTA ATGACGACCT 105136 .......... .......... .......... .......... .......... .......... 114 CCACTTCTAA TTTAATATTA ACATATACAC TATTTATTTT TCCACTAACG ACTAATTTTT 105076 .......... .......... .......... .......... .......... .......... 114 TTAATTTTTT TTTGACAATA TTTATATAGT AATTTCTGCT AAGGTTAATT CTTAGTTTTT 105016 .......... .......... .......... .......... .......... .......... 114 ATCAACTCAT TTTTACTATA TATAATTAAT GTCCTTCTCA AAGCCTAATA ACGCCCATTT 104956 | || ||||| |||| || ||| ......TTAT TTTTATTATA TAGTTTTA.. .......... .......... .......... 136 TACGTTAAGT TAAACTGTTA GAATTGACGA AATTAGGATT AAATTTTAAA AAGAATCTTG 104896 |||| | .......... .......... .......... .......... .......... ..TAATCAGG 144 -AAATATGAT TTAAATATAT TCACAAAATT ATATCAGAAA AATAAATAAA AAATTTAAAA 104837 | ||| |||||||||| | ||| || ||||| || |||| TCGCTCTGA- TTAAATATAT TTGAAAATTT TTATCA-AAT AATAT..... .......... 187 TAAAATTGTG TAAGAAAAAA AGAATTGTTA TCGATTTTAA ATAAAAAAGA AAAAATAACA 104777 .......... .......... .......... .......... .......... .......... 187 TATATAAAAC GAAAAAAAAT ATATTTTTCT TAGTGAGTAG ATTTATCCAC ACTAGTAATT 104717 .......... .......... .......... .......... .......... .......... 187 GTGTGATTAT TGTAACATAT TATTCATTAG TCTAGGTACG AATTAATTGA CTCGAATATT 104657 .......... .......... .......... .......... .......... .......... 187 ATCGTCCTAA TAAAAAAAAT ATTCTTAATT TTGTTCTATT TTTTAATTAG CTTATTCCAA 104597 .......... .......... .......... .......... .......... .......... 187 AGTAAAAAAA ATCAAAGACA TGTTCTTATA TTTATGAACT TCTTAATTAA ACATTTATAA 104537 .......... .......... .......... .......... .......... .......... 187 TTACCACAAG AATCTCAAGA CATGTTTATA ATTAATAAAT TTAGATGTCT GTTTTTCTTT 104477 .......... .......... .......... .......... .......... .......... 187 CTAATTAAAT TAATATAATT TTACCTTTGA TAGCATATAT TTATAATTAC CATAGAATTC 104417 .......... .......... .......... .......... .......... .......... 187 AAAGCATGTT TACTGTTAGA TAAATTTAAA TATCTTCTAT ATTTTCTAAA ACCTTTGGCG 104357 .......... .......... .......... .......... .......... .......... 187 TCCAATTCGA TCAAAGTATG TCCACACAAT TCAATACTAC AAAAACTTTC TATATAAAGA 104297 .......... .......... .......... .......... .......... .......... 187 GAGATAATAG TCAAAATACA TCTGAAATGT TACGTTTTTT GTAAAATTTC TATTTAAATT 104237 .......... .......... .......... .......... .......... .......... 187 ATCACGTGCT CAATTTTTTT TACCTAAATC ATTATCAACT ATTTAACAAT ACACATCTCA 104177 .......... .......... .......... .......... .......... .......... 187 ATTATCAGTT ATTTTCTTTT TCTACTTGAA TACAGTAATA TTTCAGATAA AAAAAGAAAA 104117 .......... .......... .......... .......... .......... .......... 187 AGAGAAACAA TTGATAATTA TATTAACGCG TGATTTGATA AATAATTAAT GAGTTTATGT 104057 .......... .......... .......... .......... .......... .......... 187 ATAAAAAATG AACACCTCAT GGTTCAAAAA AAAATCTTGC AAAAATATAA TACTCTAGAT 103997 .......... .......... .......... .......... .......... .......... 187 ACTATTTTTT ACCATTAAAG TATATATTTC AATATATATA TATATATATA TATATATATA 103937 .......... .......... .......... .......... .......... .......... 187 TAAACAAAAA TATATGTAAT GGCATTACTG TAAATTCAGT GTTGCCTTAT ACCATATATA 103877 .......... .......... .......... .......... .......... .......... 187 AGTAAGTGTG GGGGCTAAAT TAACCAACTA AATTCCTTCT TGTTTATCAT TTTCTCTCTT 103817 .......... .......... .......... .......... .......... .......... 187 CCCAAAAAAA AATCCCAAAA TTTAATCATA ATACAATTCG AATTTATCAA CCTCGTACTA 103757 .......... .......... .......... .......... .......... .......... 187 CGTACATATT TTTGTTGGTA CGTAAAATAC TGAATTCAGG TCAACTCAAA CATCGTAAAT 103697 .......... .......... .......... .......... .......... .......... 187 TGTGATTTCT TTATGGAAAG TACGGATTCA TCAACCGGGA CACGTCATCA GCCTCAACTC 103637 | | | ||||| || ||| |||||| |||||||| | | |||||| || ||| | .....TGTGG TCATGGAGAG TACCGATTCA TCAACCGGCT CTCATCATCA ACCACAATTG 242 CCACCGGGGT TTCGATTCCA CCCGACGGAC GAAGAACTCA TCGTCCACTA CCTCAAAAAA 103577 ||||| || | ||||||| || || || || ||||| || | || || || || || ||| CCACCTGGAT TTCGATTTCA TCCAACTGAT GAAGAGCTTG TGGTTCATTA TCTTAAGAAA 302 CGAGTCGCCG GCGCTCCGAT TCCGGTGGAT ATTATTGGTG AAATTGATCT TTATAAGTTT 103517 |||| ||| | ||| | ||| || | ||||||| || || ||||||| ||| || ||| AGAGTTGCCT CTGTTCCTCT TCCTGTTTCT ATTATTGCTG AAGTTGATCT TTACAAATTT 362 GATCCATGGG AACTCCCTGG TACTATTTTC ACCACTATAC TATATTTTCT TGCCCTATAA 103457 ||||| |||| |||| |||| GATCCTTGGG AACTACCTG. .......... .......... .......... .......... 381 CTTATATATA GGGGAAAAAG ATCGGAGTCA GCGATGAACA ATTATTGTGT CTAAATTAAA 103397 .......... .......... .......... .......... .......... .......... 381 TTTTAAATAT GCAATAGATT GGTGACGAAT TTCGTTGCTA ATTAATTTTT TAGTGATAAA 103337 .......... .......... .......... .......... .......... .......... 381 TTAATATTTT TCCCCTTTTT AATCTTCATG TTTTTTATCA CAAAGTTTTC TATGACCAAC 103277 .......... .......... .......... .......... .......... .......... 381 TTATAAAGAT TTGAACTCGA TCAATTTTTT TTTTAGAATG AATGAACTTA TGTTATATAT 103217 .......... .......... .......... .......... .......... .......... 381 AGTGATATTT TAAATGCTTT TTTATATTTT CAAAAGATAT CCACGATAAC GTGTAAAAAG 103157 .......... .......... .......... .......... .......... .......... 381 TGAATTTGCA AAAAAAAAAA TGTAGTACCT TTTATTTAAT TTTATTGTAG ATAATTTAGA 103097 .......... .......... .......... .......... .......... .......... 381 TTTTAATTTT GAATTTGTTT AATTTAAATT CTGAATCGTA TAATATTTAT TTAATTTCTA 103037 .......... .......... .......... .......... .......... .......... 381 TTTTTTGAGT TTTTTTTTGG AGGGTGCTTA AAAAGTAGTA TTCACAAATA TAAAGTAGTG 102977 .......... .......... .......... .......... .......... .......... 381 GACAAACATA AAGTAGTGGA CCCATAATTT ATTTTTTTAA AAATTATATT AAAACTATTT 102917 .......... .......... .......... .......... .......... .......... 381 GTTAAGTTTA AATTCTGAAT TATCTTCTTA TCATGTGTTT AACGCAGCTA AGGCAATATT 102857 ||| |||| | ||| .......... .......... .......... .......... .......CTA AGGCGACATT 394 CGGAGAGCAA GAATGGTTCT TTTTTAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGAG 102797 ||||| ||| ||||||| | | || ||||| |||||||||| |||||||||| |||||||| | TGGAGAACAA GAATGGTATT TCTTCAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGCG 454 GCCAAATCGG GCTGCAACAT CGGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTTTT 102737 |||||| || || ||||| | | |||||||| |||||||||| |||||||||| ||||||| | CCCAAATAGG GCGGCAACTT CCGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTGCT 514 TACTTCCGGT GGAACACAAA AGGTTGGGGT AAAAAAGGCG CTCGTTTTT 102688 || |||| || || |||| | || | || |||||||| | || ||| CACCGCCGGC GGGACCCAAA AAGTAAGTGT CAAAAAGGCA TTGGTGTTT 563 hqPGS_C10SLe0045H11.1-_SGN-E256826+ (105009 104988,104903 104852,103691 103498,102869 102688) ******************************************************************************** EST sequence 81 +strand 486 n (File: SGN-E201821+) 1 TTTTCGTATC ATACAATTTA CTCTTTCTTT CTTTTTTTTT TATTATTATT TTTATTATAT 61 AGTTTTATAA TCAGGTCGCT CTGATTAAAT ATATTTGAAA ATTTTTATCA AATAATATTG 121 TGGTCATGGA GAGTACCGAT TCATCAACCG GCTCTCATCA TCAACCACAA TTGCCACCTG 181 GATTTCGATT TCATCCAACT GATGAAGAGC TTGTGGTTCA TTATCTTAAG AAAAGAGTTG 241 CCTCTGTTCC TCTTCCTGTT TCTATTATTG CTGAAGTTGA TCTTTACAAA TTTGATCCTT 301 GGGAACTACC TGCTAAGGCG ACATTTGGAG AACAAGAATG GTATTTCTTC AGTCCAAGAG 361 ATAGAAAATA TCCTAACGGG GCGCGCCCAA ATAGGGCGGC AACTTCCGGT TATTGGAAGG 421 CTACCGGAAC CGACAAGCCG GTGCTCACCG CCGGCGGGAC CCCAAAAGTA GGTGTCAAAA 481 AGGCAT Predicted gene structure (within gDNA segment 106931 to 101690): Exon 1 104886 104852 ( 35 n); cDNA 85 118 ( 34 n); score: 0.771 Intron 1 104851 103692 (1160 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.76) Exon 2 103691 103498 ( 194 n); cDNA 119 312 ( 194 n); score: 0.753 Intron 2 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 3 102869 102698 ( 172 n); cDNA 313 484 ( 172 n); score: 0.843 PPA cDNA 44 32 MATCH C10SLe0045H11.1- SGN-E201821+ 0.795 401 0.825 C PGS_C10SLe0045H11.1-_SGN-E201821+ (104886 104852,103691 103498,102869 102698) Alignment (genomic DNA sequence = upper lines): TTAAATATAT TCACAAAATT ATATCAGAAA AATAAATAAA AAATTTAAAA TAAAATTGTG 104827 |||||||||| | ||| || ||||| || |||| TTAAATATAT TTGAAAATTT TTATCA-AAT AATAT..... .......... .......... 118 TAAGAAAAAA AGAATTGTTA TCGATTTTAA ATAAAAAAGA AAAAATAACA TATATAAAAC 104767 .......... .......... .......... .......... .......... .......... 118 GAAAAAAAAT ATATTTTTCT TAGTGAGTAG ATTTATCCAC ACTAGTAATT GTGTGATTAT 104707 .......... .......... .......... .......... .......... .......... 118 TGTAACATAT TATTCATTAG TCTAGGTACG AATTAATTGA CTCGAATATT ATCGTCCTAA 104647 .......... .......... .......... .......... .......... .......... 118 TAAAAAAAAT ATTCTTAATT TTGTTCTATT TTTTAATTAG CTTATTCCAA AGTAAAAAAA 104587 .......... .......... .......... .......... .......... .......... 118 ATCAAAGACA TGTTCTTATA TTTATGAACT TCTTAATTAA ACATTTATAA TTACCACAAG 104527 .......... .......... .......... .......... .......... .......... 118 AATCTCAAGA CATGTTTATA ATTAATAAAT TTAGATGTCT GTTTTTCTTT CTAATTAAAT 104467 .......... .......... .......... .......... .......... .......... 118 TAATATAATT TTACCTTTGA TAGCATATAT TTATAATTAC CATAGAATTC AAAGCATGTT 104407 .......... .......... .......... .......... .......... .......... 118 TACTGTTAGA TAAATTTAAA TATCTTCTAT ATTTTCTAAA ACCTTTGGCG TCCAATTCGA 104347 .......... .......... .......... .......... .......... .......... 118 TCAAAGTATG TCCACACAAT TCAATACTAC AAAAACTTTC TATATAAAGA GAGATAATAG 104287 .......... .......... .......... .......... .......... .......... 118 TCAAAATACA TCTGAAATGT TACGTTTTTT GTAAAATTTC TATTTAAATT ATCACGTGCT 104227 .......... .......... .......... .......... .......... .......... 118 CAATTTTTTT TACCTAAATC ATTATCAACT ATTTAACAAT ACACATCTCA ATTATCAGTT 104167 .......... .......... .......... .......... .......... .......... 118 ATTTTCTTTT TCTACTTGAA TACAGTAATA TTTCAGATAA AAAAAGAAAA AGAGAAACAA 104107 .......... .......... .......... .......... .......... .......... 118 TTGATAATTA TATTAACGCG TGATTTGATA AATAATTAAT GAGTTTATGT ATAAAAAATG 104047 .......... .......... .......... .......... .......... .......... 118 AACACCTCAT GGTTCAAAAA AAAATCTTGC AAAAATATAA TACTCTAGAT ACTATTTTTT 103987 .......... .......... .......... .......... .......... .......... 118 ACCATTAAAG TATATATTTC AATATATATA TATATATATA TATATATATA TAAACAAAAA 103927 .......... .......... .......... .......... .......... .......... 118 TATATGTAAT GGCATTACTG TAAATTCAGT GTTGCCTTAT ACCATATATA AGTAAGTGTG 103867 .......... .......... .......... .......... .......... .......... 118 GGGGCTAAAT TAACCAACTA AATTCCTTCT TGTTTATCAT TTTCTCTCTT CCCAAAAAAA 103807 .......... .......... .......... .......... .......... .......... 118 AATCCCAAAA TTTAATCATA ATACAATTCG AATTTATCAA CCTCGTACTA CGTACATATT 103747 .......... .......... .......... .......... .......... .......... 118 TTTGTTGGTA CGTAAAATAC TGAATTCAGG TCAACTCAAA CATCGTAAAT TGTGATTTCT 103687 | | .......... .......... .......... .......... .......... .....TGTGG 123 TTATGGAAAG TACGGATTCA TCAACCGGGA CACGTCATCA GCCTCAACTC CCACCGGGGT 103627 | ||||| || ||| |||||| |||||||| | | |||||| || ||| | ||||| || | TCATGGAGAG TACCGATTCA TCAACCGGCT CTCATCATCA ACCACAATTG CCACCTGGAT 183 TTCGATTCCA CCCGACGGAC GAAGAACTCA TCGTCCACTA CCTCAAAAAA CGAGTCGCCG 103567 ||||||| || || || || ||||| || | || || || || || ||| |||| ||| TTCGATTTCA TCCAACTGAT GAAGAGCTTG TGGTTCATTA TCTTAAGAAA AGAGTTGCCT 243 GCGCTCCGAT TCCGGTGGAT ATTATTGGTG AAATTGATCT TTATAAGTTT GATCCATGGG 103507 | ||| | ||| || | ||||||| || || ||||||| ||| || ||| ||||| |||| CTGTTCCTCT TCCTGTTTCT ATTATTGCTG AAGTTGATCT TTACAAATTT GATCCTTGGG 303 AACTCCCTGG TACTATTTTC ACCACTATAC TATATTTTCT TGCCCTATAA CTTATATATA 103447 |||| |||| AACTACCTG. .......... .......... .......... .......... .......... 312 GGGGAAAAAG ATCGGAGTCA GCGATGAACA ATTATTGTGT CTAAATTAAA TTTTAAATAT 103387 .......... .......... .......... .......... .......... .......... 312 GCAATAGATT GGTGACGAAT TTCGTTGCTA ATTAATTTTT TAGTGATAAA TTAATATTTT 103327 .......... .......... .......... .......... .......... .......... 312 TCCCCTTTTT AATCTTCATG TTTTTTATCA CAAAGTTTTC TATGACCAAC TTATAAAGAT 103267 .......... .......... .......... .......... .......... .......... 312 TTGAACTCGA TCAATTTTTT TTTTAGAATG AATGAACTTA TGTTATATAT AGTGATATTT 103207 .......... .......... .......... .......... .......... .......... 312 TAAATGCTTT TTTATATTTT CAAAAGATAT CCACGATAAC GTGTAAAAAG TGAATTTGCA 103147 .......... .......... .......... .......... .......... .......... 312 AAAAAAAAAA TGTAGTACCT TTTATTTAAT TTTATTGTAG ATAATTTAGA TTTTAATTTT 103087 .......... .......... .......... .......... .......... .......... 312 GAATTTGTTT AATTTAAATT CTGAATCGTA TAATATTTAT TTAATTTCTA TTTTTTGAGT 103027 .......... .......... .......... .......... .......... .......... 312 TTTTTTTTGG AGGGTGCTTA AAAAGTAGTA TTCACAAATA TAAAGTAGTG GACAAACATA 102967 .......... .......... .......... .......... .......... .......... 312 AAGTAGTGGA CCCATAATTT ATTTTTTTAA AAATTATATT AAAACTATTT GTTAAGTTTA 102907 .......... .......... .......... .......... .......... .......... 312 AATTCTGAAT TATCTTCTTA TCATGTGTTT AACGCAGCTA AGGCAATATT CGGAGAGCAA 102847 ||| |||| | ||| ||||| ||| .......... .......... .......... .......CTA AGGCGACATT TGGAGAACAA 335 GAATGGTTCT TTTTTAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGAG GCCAAATCGG 102787 ||||||| | | || ||||| |||||||||| |||||||||| |||||||| | |||||| || GAATGGTATT TCTTCAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGCG CCCAAATAGG 395 GCTGCAACAT CGGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTTTT TACTTCCGGT 102727 || ||||| | | |||||||| |||||||||| |||||||||| ||||||| | || |||| GCGGCAACTT CCGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTGCT CACCGCCGGC 455 GGAACACAAA AGGTTGGGGT AAAAAAGGC 102698 || || | || | || || || |||||||| GGGACCCCAA AAGTAGGTGT CAAAAAGGC 484 hqPGS_C10SLe0045H11.1-_SGN-E201821+ (104886 104852,103691 103498,102869 102698) ******************************************************************************** EST sequence 114 +strand 536 n (File: SGN-E244975+) 1 TCCAGCTGAT TTTCTGTATT TTTGTACTAC TAACTCACAG CACACACACC ATTTCTCTCT 61 CTCTTCTAAG CTGAATTTTC GTATCATACA ATTTACTCTT TCTTTCTTTT TTTTTTATTA 121 TTATTTTTAT TATATAGTTT TATAATCAGG TCGCTCTGAT TAAATATATT TGAAAATTTT 181 TATCAAATAA TATTGTGGTC ATGGAGAGTA CCGATTCATC AACCGGCTCT CATCATCAAC 241 CACAATTGCC ACCTGGATTT CGATTTCATC CAACTGATGA AGAGCTTGTG GTTCATTATC 301 TTAAGAAAAG AGTTGCCTCT GTTCCTCTTC CTGTTTCTAT TATTGCTGAA GTTGATCTTT 361 ACAAATTTGA TCCTTGGGAA CTACCTGCTA AGGCGACATT TGGAGAACAA GAATGGTATT 421 TCTTCAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGCG CCCAAATAGG GCGGCAACTT 481 CCGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTGCT CACCGCCGGC GGGACC Predicted gene structure (within gDNA segment 107681 to 101940): Exon 1 106095 106076 ( 20 n); cDNA 103 120 ( 18 n); score: 0.800 Intron 1 106075 105010 (1066 n); Pd: 0.969 (s: 0), Pa: 0.000 (s: 0) Exon 2 105009 104988 ( 22 n); cDNA 121 142 ( 22 n); score: 0.773 Intron 2 104987 104904 ( 84 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 104903 104852 ( 52 n); cDNA 143 193 ( 51 n); score: 0.644 Intron 3 104851 103692 (1160 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.76) Exon 4 103691 103498 ( 194 n); cDNA 194 387 ( 194 n); score: 0.753 Intron 4 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 5 102869 102722 ( 148 n); cDNA 388 535 ( 148 n); score: 0.858 MATCH C10SLe0045H11.1- SGN-E244975+ 0.778 436 0.813 C PGS_C10SLe0045H11.1-_SGN-E244975+ (106095 106076,105009 104988,104903 104852,103691 103498,102869 102722) Alignment (genomic DNA sequence = upper lines): TTGCTTTTTT CTTTAATTAG GTAAGTGCAA CATCCATAAA TATTTTTCAA GATATTTTTC 106036 || ||||||| ||| |||| TTTCTTTTTT TTTT-ATTA- .......... .......... .......... .......... 120 CGTAATTCAT TCACAATTTT TTTTAAAAGA ATTATTTAGT GTTTACCTGT TTACATTTAT 105976 .......... .......... .......... .......... .......... .......... 120 ATTGAAATTA ATTAAATTTA AAATCATAAT TAAGAGTGGA GAAATTTCAT TTATCAATAA 105916 .......... .......... .......... .......... .......... .......... 120 CCTAAATACT TAATTCTCCA ATGAAACTAA CTATAAGATT TTTCTCCCTA ATAATAGGTT 105856 .......... .......... .......... .......... .......... .......... 120 CATTTATTTT AGATTGGTCA TGTGAAGGAT ATGTGTTGAA ACAAATCCCT AAATTTCTTA 105796 .......... .......... .......... .......... .......... .......... 120 TTCTTGTTAA GTTTAAAAAT AAAAATGCTA AAAAAATTTT TTACAATGAA AGAATATTAT 105736 .......... .......... .......... .......... .......... .......... 120 AAAACTAATT AAATCCGTCC AAATTATATC ATACGTATCG CGAGGATTCA TCATAAATTG 105676 .......... .......... .......... .......... .......... .......... 120 ACTACTAGTC GTCGTATTTG TTGTCTCTAT CCGAGTTCAA GATCAACGAT ACTATATATA 105616 .......... .......... .......... .......... .......... .......... 120 AATACATCGA TAGAGACAAG TTGTTGTAAA AAAATTCCAA GTGTGACACT AGGCCAAATT 105556 .......... .......... .......... .......... .......... .......... 120 TGTCCAAAGA GTAGCCTAGA AATGCTTTCT TATCTTATTA TCTGTCTGTC GAGTCATGTC 105496 .......... .......... .......... .......... .......... .......... 120 AAACTTCTGT TGTAAAATTT AATCACTCCT AATTCGATAT TTCAAAATCG AGTTTTGCAA 105436 .......... .......... .......... .......... .......... .......... 120 ATTAAGAAAA TTTCATTGTA GGACGAGTTT CCTCTTTAAT TAAATGATTC ATATGAGCGC 105376 .......... .......... .......... .......... .......... .......... 120 CACGAATTCA ACTGAATATC AAATAAAATA CTGAATGATT GATATAGATC TCTTTATATA 105316 .......... .......... .......... .......... .......... .......... 120 TCTTGTGCAG GATAAAGTAG TTCTGCGTAT ATGCCCCTTT TACTCGATTG TCCACGTGTT 105256 .......... .......... .......... .......... .......... .......... 120 GGTACCAACT TGCATGCGTA TCGATTAATT ATATTGCCTA ATTTTCAGTT ATCAAGCTCT 105196 .......... .......... .......... .......... .......... .......... 120 AATTACATCA TTGTCATGTA TTAATCTAAT CACCTCTTCA ATTTATGCTA ATGACGACCT 105136 .......... .......... .......... .......... .......... .......... 120 CCACTTCTAA TTTAATATTA ACATATACAC TATTTATTTT TCCACTAACG ACTAATTTTT 105076 .......... .......... .......... .......... .......... .......... 120 TTAATTTTTT TTTGACAATA TTTATATAGT AATTTCTGCT AAGGTTAATT CTTAGTTTTT 105016 .......... .......... .......... .......... .......... .......... 120 ATCAACTCAT TTTTACTATA TATAATTAAT GTCCTTCTCA AAGCCTAATA ACGCCCATTT 104956 | || ||||| |||| || ||| ......TTAT TTTTATTATA TAGTTTTA.. .......... .......... .......... 142 TACGTTAAGT TAAACTGTTA GAATTGACGA AATTAGGATT AAATTTTAAA AAGAATCTTG 104896 |||| | .......... .......... .......... .......... .......... ..TAATCAGG 150 -AAATATGAT TTAAATATAT TCACAAAATT ATATCAGAAA AATAAATAAA AAATTTAAAA 104837 | ||| |||||||||| | ||| || ||||| || |||| TCGCTCTGA- TTAAATATAT TTGAAAATTT TTATCA-AAT AATAT..... .......... 193 TAAAATTGTG TAAGAAAAAA AGAATTGTTA TCGATTTTAA ATAAAAAAGA AAAAATAACA 104777 .......... .......... .......... .......... .......... .......... 193 TATATAAAAC GAAAAAAAAT ATATTTTTCT TAGTGAGTAG ATTTATCCAC ACTAGTAATT 104717 .......... .......... .......... .......... .......... .......... 193 GTGTGATTAT TGTAACATAT TATTCATTAG TCTAGGTACG AATTAATTGA CTCGAATATT 104657 .......... .......... .......... .......... .......... .......... 193 ATCGTCCTAA TAAAAAAAAT ATTCTTAATT TTGTTCTATT TTTTAATTAG CTTATTCCAA 104597 .......... .......... .......... .......... .......... .......... 193 AGTAAAAAAA ATCAAAGACA TGTTCTTATA TTTATGAACT TCTTAATTAA ACATTTATAA 104537 .......... .......... .......... .......... .......... .......... 193 TTACCACAAG AATCTCAAGA CATGTTTATA ATTAATAAAT TTAGATGTCT GTTTTTCTTT 104477 .......... .......... .......... .......... .......... .......... 193 CTAATTAAAT TAATATAATT TTACCTTTGA TAGCATATAT TTATAATTAC CATAGAATTC 104417 .......... .......... .......... .......... .......... .......... 193 AAAGCATGTT TACTGTTAGA TAAATTTAAA TATCTTCTAT ATTTTCTAAA ACCTTTGGCG 104357 .......... .......... .......... .......... .......... .......... 193 TCCAATTCGA TCAAAGTATG TCCACACAAT TCAATACTAC AAAAACTTTC TATATAAAGA 104297 .......... .......... .......... .......... .......... .......... 193 GAGATAATAG TCAAAATACA TCTGAAATGT TACGTTTTTT GTAAAATTTC TATTTAAATT 104237 .......... .......... .......... .......... .......... .......... 193 ATCACGTGCT CAATTTTTTT TACCTAAATC ATTATCAACT ATTTAACAAT ACACATCTCA 104177 .......... .......... .......... .......... .......... .......... 193 ATTATCAGTT ATTTTCTTTT TCTACTTGAA TACAGTAATA TTTCAGATAA AAAAAGAAAA 104117 .......... .......... .......... .......... .......... .......... 193 AGAGAAACAA TTGATAATTA TATTAACGCG TGATTTGATA AATAATTAAT GAGTTTATGT 104057 .......... .......... .......... .......... .......... .......... 193 ATAAAAAATG AACACCTCAT GGTTCAAAAA AAAATCTTGC AAAAATATAA TACTCTAGAT 103997 .......... .......... .......... .......... .......... .......... 193 ACTATTTTTT ACCATTAAAG TATATATTTC AATATATATA TATATATATA TATATATATA 103937 .......... .......... .......... .......... .......... .......... 193 TAAACAAAAA TATATGTAAT GGCATTACTG TAAATTCAGT GTTGCCTTAT ACCATATATA 103877 .......... .......... .......... .......... .......... .......... 193 AGTAAGTGTG GGGGCTAAAT TAACCAACTA AATTCCTTCT TGTTTATCAT TTTCTCTCTT 103817 .......... .......... .......... .......... .......... .......... 193 CCCAAAAAAA AATCCCAAAA TTTAATCATA ATACAATTCG AATTTATCAA CCTCGTACTA 103757 .......... .......... .......... .......... .......... .......... 193 CGTACATATT TTTGTTGGTA CGTAAAATAC TGAATTCAGG TCAACTCAAA CATCGTAAAT 103697 .......... .......... .......... .......... .......... .......... 193 TGTGATTTCT TTATGGAAAG TACGGATTCA TCAACCGGGA CACGTCATCA GCCTCAACTC 103637 | | | ||||| || ||| |||||| |||||||| | | |||||| || ||| | .....TGTGG TCATGGAGAG TACCGATTCA TCAACCGGCT CTCATCATCA ACCACAATTG 248 CCACCGGGGT TTCGATTCCA CCCGACGGAC GAAGAACTCA TCGTCCACTA CCTCAAAAAA 103577 ||||| || | ||||||| || || || || ||||| || | || || || || || ||| CCACCTGGAT TTCGATTTCA TCCAACTGAT GAAGAGCTTG TGGTTCATTA TCTTAAGAAA 308 CGAGTCGCCG GCGCTCCGAT TCCGGTGGAT ATTATTGGTG AAATTGATCT TTATAAGTTT 103517 |||| ||| | ||| | ||| || | ||||||| || || ||||||| ||| || ||| AGAGTTGCCT CTGTTCCTCT TCCTGTTTCT ATTATTGCTG AAGTTGATCT TTACAAATTT 368 GATCCATGGG AACTCCCTGG TACTATTTTC ACCACTATAC TATATTTTCT TGCCCTATAA 103457 ||||| |||| |||| |||| GATCCTTGGG AACTACCTG. .......... .......... .......... .......... 387 CTTATATATA GGGGAAAAAG ATCGGAGTCA GCGATGAACA ATTATTGTGT CTAAATTAAA 103397 .......... .......... .......... .......... .......... .......... 387 TTTTAAATAT GCAATAGATT GGTGACGAAT TTCGTTGCTA ATTAATTTTT TAGTGATAAA 103337 .......... .......... .......... .......... .......... .......... 387 TTAATATTTT TCCCCTTTTT AATCTTCATG TTTTTTATCA CAAAGTTTTC TATGACCAAC 103277 .......... .......... .......... .......... .......... .......... 387 TTATAAAGAT TTGAACTCGA TCAATTTTTT TTTTAGAATG AATGAACTTA TGTTATATAT 103217 .......... .......... .......... .......... .......... .......... 387 AGTGATATTT TAAATGCTTT TTTATATTTT CAAAAGATAT CCACGATAAC GTGTAAAAAG 103157 .......... .......... .......... .......... .......... .......... 387 TGAATTTGCA AAAAAAAAAA TGTAGTACCT TTTATTTAAT TTTATTGTAG ATAATTTAGA 103097 .......... .......... .......... .......... .......... .......... 387 TTTTAATTTT GAATTTGTTT AATTTAAATT CTGAATCGTA TAATATTTAT TTAATTTCTA 103037 .......... .......... .......... .......... .......... .......... 387 TTTTTTGAGT TTTTTTTTGG AGGGTGCTTA AAAAGTAGTA TTCACAAATA TAAAGTAGTG 102977 .......... .......... .......... .......... .......... .......... 387 GACAAACATA AAGTAGTGGA CCCATAATTT ATTTTTTTAA AAATTATATT AAAACTATTT 102917 .......... .......... .......... .......... .......... .......... 387 GTTAAGTTTA AATTCTGAAT TATCTTCTTA TCATGTGTTT AACGCAGCTA AGGCAATATT 102857 ||| |||| | ||| .......... .......... .......... .......... .......CTA AGGCGACATT 400 CGGAGAGCAA GAATGGTTCT TTTTTAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGAG 102797 ||||| ||| ||||||| | | || ||||| |||||||||| |||||||||| |||||||| | TGGAGAACAA GAATGGTATT TCTTCAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGCG 460 GCCAAATCGG GCTGCAACAT CGGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTTTT 102737 |||||| || || ||||| | | |||||||| |||||||||| |||||||||| ||||||| | CCCAAATAGG GCGGCAACTT CCGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTGCT 520 TACTTCCGGT GGAAC 102722 || |||| || || CACCGCCGGC GGGAC 535 hqPGS_C10SLe0045H11.1-_SGN-E244975+ (105009 104988,104903 104852,103691 103498,102869 102722) ******************************************************************************** EST sequence 97 +strand 517 n (File: SGN-E271466+) 1 TGATTTTCTG TATTTTTGTA CTACTAACTC ACAGCACACA CACCATTTCT CTCTCTCTTC 61 TAAGCTGAAT TTTCGTATCA TACAATTTAC TCTTTCTTTC TTTTTTTTTT ATTATTATTT 121 TTATTATATA GTTTTATAAT CAGGTCGCTC TGATTAAATA TATTTGAAAA TTTTTATCAA 181 ATAATATTGT GGTCATGGAG AGTACCGATT CATCAACCGG CTCTCATCAT CAACCACAAT 241 TGCCACCTGG ATTTCGATTT CATCCAACTG ATGAAGAGCT TGTGGTTCAT TATCTTAAGA 301 AAAGAGTTGC CTCTGTTCCT CTTCCTGTTT CTATTATTGC TGAAGTTGAT CTTTACAAAT 361 TTGATCCTTG GGAACTACCT GCTAAGGCGA CATTTGGAGA ACAAGAATGG TATTTCTTCA 421 GTCCAAGAGA TAGAAAATAT CCTAACGGGG CGCGCCCAAA TAGGGCGGCA ACTTCCGGTT 481 ATTGGAAGGC TACCGGAACC GACAAGCCGG TGCTCAC Predicted gene structure (within gDNA segment 107621 to 102070): Exon 1 106095 106076 ( 20 n); cDNA 97 114 ( 18 n); score: 0.800 Intron 1 106075 105010 (1066 n); Pd: 0.969 (s: 0), Pa: 0.000 (s: 0) Exon 2 105009 104988 ( 22 n); cDNA 115 136 ( 22 n); score: 0.773 Intron 2 104987 104904 ( 84 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 104903 104852 ( 52 n); cDNA 137 187 ( 51 n); score: 0.644 Intron 3 104851 103692 (1160 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.76) Exon 4 103691 103498 ( 194 n); cDNA 188 381 ( 194 n); score: 0.753 Intron 4 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 5 102869 102734 ( 136 n); cDNA 382 517 ( 136 n); score: 0.875 MATCH C10SLe0045H11.1- SGN-E271466+ 0.781 424 0.820 C PGS_C10SLe0045H11.1-_SGN-E271466+ (106095 106076,105009 104988,104903 104852,103691 103498,102869 102734) Alignment (genomic DNA sequence = upper lines): TTGCTTTTTT CTTTAATTAG GTAAGTGCAA CATCCATAAA TATTTTTCAA GATATTTTTC 106036 || ||||||| ||| |||| TTTCTTTTTT TTTT-ATTA- .......... .......... .......... .......... 114 CGTAATTCAT TCACAATTTT TTTTAAAAGA ATTATTTAGT GTTTACCTGT TTACATTTAT 105976 .......... .......... .......... .......... .......... .......... 114 ATTGAAATTA ATTAAATTTA AAATCATAAT TAAGAGTGGA GAAATTTCAT TTATCAATAA 105916 .......... .......... .......... .......... .......... .......... 114 CCTAAATACT TAATTCTCCA ATGAAACTAA CTATAAGATT TTTCTCCCTA ATAATAGGTT 105856 .......... .......... .......... .......... .......... .......... 114 CATTTATTTT AGATTGGTCA TGTGAAGGAT ATGTGTTGAA ACAAATCCCT AAATTTCTTA 105796 .......... .......... .......... .......... .......... .......... 114 TTCTTGTTAA GTTTAAAAAT AAAAATGCTA AAAAAATTTT TTACAATGAA AGAATATTAT 105736 .......... .......... .......... .......... .......... .......... 114 AAAACTAATT AAATCCGTCC AAATTATATC ATACGTATCG CGAGGATTCA TCATAAATTG 105676 .......... .......... .......... .......... .......... .......... 114 ACTACTAGTC GTCGTATTTG TTGTCTCTAT CCGAGTTCAA GATCAACGAT ACTATATATA 105616 .......... .......... .......... .......... .......... .......... 114 AATACATCGA TAGAGACAAG TTGTTGTAAA AAAATTCCAA GTGTGACACT AGGCCAAATT 105556 .......... .......... .......... .......... .......... .......... 114 TGTCCAAAGA GTAGCCTAGA AATGCTTTCT TATCTTATTA TCTGTCTGTC GAGTCATGTC 105496 .......... .......... .......... .......... .......... .......... 114 AAACTTCTGT TGTAAAATTT AATCACTCCT AATTCGATAT TTCAAAATCG AGTTTTGCAA 105436 .......... .......... .......... .......... .......... .......... 114 ATTAAGAAAA TTTCATTGTA GGACGAGTTT CCTCTTTAAT TAAATGATTC ATATGAGCGC 105376 .......... .......... .......... .......... .......... .......... 114 CACGAATTCA ACTGAATATC AAATAAAATA CTGAATGATT GATATAGATC TCTTTATATA 105316 .......... .......... .......... .......... .......... .......... 114 TCTTGTGCAG GATAAAGTAG TTCTGCGTAT ATGCCCCTTT TACTCGATTG TCCACGTGTT 105256 .......... .......... .......... .......... .......... .......... 114 GGTACCAACT TGCATGCGTA TCGATTAATT ATATTGCCTA ATTTTCAGTT ATCAAGCTCT 105196 .......... .......... .......... .......... .......... .......... 114 AATTACATCA TTGTCATGTA TTAATCTAAT CACCTCTTCA ATTTATGCTA ATGACGACCT 105136 .......... .......... .......... .......... .......... .......... 114 CCACTTCTAA TTTAATATTA ACATATACAC TATTTATTTT TCCACTAACG ACTAATTTTT 105076 .......... .......... .......... .......... .......... .......... 114 TTAATTTTTT TTTGACAATA TTTATATAGT AATTTCTGCT AAGGTTAATT CTTAGTTTTT 105016 .......... .......... .......... .......... .......... .......... 114 ATCAACTCAT TTTTACTATA TATAATTAAT GTCCTTCTCA AAGCCTAATA ACGCCCATTT 104956 | || ||||| |||| || ||| ......TTAT TTTTATTATA TAGTTTTA.. .......... .......... .......... 136 TACGTTAAGT TAAACTGTTA GAATTGACGA AATTAGGATT AAATTTTAAA AAGAATCTTG 104896 |||| | .......... .......... .......... .......... .......... ..TAATCAGG 144 -AAATATGAT TTAAATATAT TCACAAAATT ATATCAGAAA AATAAATAAA AAATTTAAAA 104837 | ||| |||||||||| | ||| || ||||| || |||| TCGCTCTGA- TTAAATATAT TTGAAAATTT TTATCA-AAT AATAT..... .......... 187 TAAAATTGTG TAAGAAAAAA AGAATTGTTA TCGATTTTAA ATAAAAAAGA AAAAATAACA 104777 .......... .......... .......... .......... .......... .......... 187 TATATAAAAC GAAAAAAAAT ATATTTTTCT TAGTGAGTAG ATTTATCCAC ACTAGTAATT 104717 .......... .......... .......... .......... .......... .......... 187 GTGTGATTAT TGTAACATAT TATTCATTAG TCTAGGTACG AATTAATTGA CTCGAATATT 104657 .......... .......... .......... .......... .......... .......... 187 ATCGTCCTAA TAAAAAAAAT ATTCTTAATT TTGTTCTATT TTTTAATTAG CTTATTCCAA 104597 .......... .......... .......... .......... .......... .......... 187 AGTAAAAAAA ATCAAAGACA TGTTCTTATA TTTATGAACT TCTTAATTAA ACATTTATAA 104537 .......... .......... .......... .......... .......... .......... 187 TTACCACAAG AATCTCAAGA CATGTTTATA ATTAATAAAT TTAGATGTCT GTTTTTCTTT 104477 .......... .......... .......... .......... .......... .......... 187 CTAATTAAAT TAATATAATT TTACCTTTGA TAGCATATAT TTATAATTAC CATAGAATTC 104417 .......... .......... .......... .......... .......... .......... 187 AAAGCATGTT TACTGTTAGA TAAATTTAAA TATCTTCTAT ATTTTCTAAA ACCTTTGGCG 104357 .......... .......... .......... .......... .......... .......... 187 TCCAATTCGA TCAAAGTATG TCCACACAAT TCAATACTAC AAAAACTTTC TATATAAAGA 104297 .......... .......... .......... .......... .......... .......... 187 GAGATAATAG TCAAAATACA TCTGAAATGT TACGTTTTTT GTAAAATTTC TATTTAAATT 104237 .......... .......... .......... .......... .......... .......... 187 ATCACGTGCT CAATTTTTTT TACCTAAATC ATTATCAACT ATTTAACAAT ACACATCTCA 104177 .......... .......... .......... .......... .......... .......... 187 ATTATCAGTT ATTTTCTTTT TCTACTTGAA TACAGTAATA TTTCAGATAA AAAAAGAAAA 104117 .......... .......... .......... .......... .......... .......... 187 AGAGAAACAA TTGATAATTA TATTAACGCG TGATTTGATA AATAATTAAT GAGTTTATGT 104057 .......... .......... .......... .......... .......... .......... 187 ATAAAAAATG AACACCTCAT GGTTCAAAAA AAAATCTTGC AAAAATATAA TACTCTAGAT 103997 .......... .......... .......... .......... .......... .......... 187 ACTATTTTTT ACCATTAAAG TATATATTTC AATATATATA TATATATATA TATATATATA 103937 .......... .......... .......... .......... .......... .......... 187 TAAACAAAAA TATATGTAAT GGCATTACTG TAAATTCAGT GTTGCCTTAT ACCATATATA 103877 .......... .......... .......... .......... .......... .......... 187 AGTAAGTGTG GGGGCTAAAT TAACCAACTA AATTCCTTCT TGTTTATCAT TTTCTCTCTT 103817 .......... .......... .......... .......... .......... .......... 187 CCCAAAAAAA AATCCCAAAA TTTAATCATA ATACAATTCG AATTTATCAA CCTCGTACTA 103757 .......... .......... .......... .......... .......... .......... 187 CGTACATATT TTTGTTGGTA CGTAAAATAC TGAATTCAGG TCAACTCAAA CATCGTAAAT 103697 .......... .......... .......... .......... .......... .......... 187 TGTGATTTCT TTATGGAAAG TACGGATTCA TCAACCGGGA CACGTCATCA GCCTCAACTC 103637 | | | ||||| || ||| |||||| |||||||| | | |||||| || ||| | .....TGTGG TCATGGAGAG TACCGATTCA TCAACCGGCT CTCATCATCA ACCACAATTG 242 CCACCGGGGT TTCGATTCCA CCCGACGGAC GAAGAACTCA TCGTCCACTA CCTCAAAAAA 103577 ||||| || | ||||||| || || || || ||||| || | || || || || || ||| CCACCTGGAT TTCGATTTCA TCCAACTGAT GAAGAGCTTG TGGTTCATTA TCTTAAGAAA 302 CGAGTCGCCG GCGCTCCGAT TCCGGTGGAT ATTATTGGTG AAATTGATCT TTATAAGTTT 103517 |||| ||| | ||| | ||| || | ||||||| || || ||||||| ||| || ||| AGAGTTGCCT CTGTTCCTCT TCCTGTTTCT ATTATTGCTG AAGTTGATCT TTACAAATTT 362 GATCCATGGG AACTCCCTGG TACTATTTTC ACCACTATAC TATATTTTCT TGCCCTATAA 103457 ||||| |||| |||| |||| GATCCTTGGG AACTACCTG. .......... .......... .......... .......... 381 CTTATATATA GGGGAAAAAG ATCGGAGTCA GCGATGAACA ATTATTGTGT CTAAATTAAA 103397 .......... .......... .......... .......... .......... .......... 381 TTTTAAATAT GCAATAGATT GGTGACGAAT TTCGTTGCTA ATTAATTTTT TAGTGATAAA 103337 .......... .......... .......... .......... .......... .......... 381 TTAATATTTT TCCCCTTTTT AATCTTCATG TTTTTTATCA CAAAGTTTTC TATGACCAAC 103277 .......... .......... .......... .......... .......... .......... 381 TTATAAAGAT TTGAACTCGA TCAATTTTTT TTTTAGAATG AATGAACTTA TGTTATATAT 103217 .......... .......... .......... .......... .......... .......... 381 AGTGATATTT TAAATGCTTT TTTATATTTT CAAAAGATAT CCACGATAAC GTGTAAAAAG 103157 .......... .......... .......... .......... .......... .......... 381 TGAATTTGCA AAAAAAAAAA TGTAGTACCT TTTATTTAAT TTTATTGTAG ATAATTTAGA 103097 .......... .......... .......... .......... .......... .......... 381 TTTTAATTTT GAATTTGTTT AATTTAAATT CTGAATCGTA TAATATTTAT TTAATTTCTA 103037 .......... .......... .......... .......... .......... .......... 381 TTTTTTGAGT TTTTTTTTGG AGGGTGCTTA AAAAGTAGTA TTCACAAATA TAAAGTAGTG 102977 .......... .......... .......... .......... .......... .......... 381 GACAAACATA AAGTAGTGGA CCCATAATTT ATTTTTTTAA AAATTATATT AAAACTATTT 102917 .......... .......... .......... .......... .......... .......... 381 GTTAAGTTTA AATTCTGAAT TATCTTCTTA TCATGTGTTT AACGCAGCTA AGGCAATATT 102857 ||| |||| | ||| .......... .......... .......... .......... .......CTA AGGCGACATT 394 CGGAGAGCAA GAATGGTTCT TTTTTAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGAG 102797 ||||| ||| ||||||| | | || ||||| |||||||||| |||||||||| |||||||| | TGGAGAACAA GAATGGTATT TCTTCAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGCG 454 GCCAAATCGG GCTGCAACAT CGGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTTTT 102737 |||||| || || ||||| | | |||||||| |||||||||| |||||||||| ||||||| | CCCAAATAGG GCGGCAACTT CCGGTTATTG GAAGGCTACC GGAACCGACA AGCCGGTGCT 514 TAC 102734 || CAC 517 hqPGS_C10SLe0045H11.1-_SGN-E271466+ (105009 104988,104903 104852,103691 103498,102869 102734) ******************************************************************************** EST sequence 96 +strand 509 n (File: SGN-E264715+) 1 TGATTTTCTG TATTTTTGTA CTACTAACTC ACAGCACACA CACCATTTCT CTCTCTCTTC 61 TAAGCTGAAT TTTCGTATCA TACAATTTAC TGTTTCTTTC TTTTTTTTTT ATTATTATTT 121 TTATTATATA GTTTTATAAT CAGGTCGCTC TGATTAAATA TATTTGAAAA TTTTTATCAA 181 ATAATATTGT GGTCATGGAG AGTACCGATT CATCAACCGG CTCTCATCAT CAACCACAAT 241 TGCCACCTGG ATTTCGATTT CATCCAACTG ATGAAGAGCT TGTGGTTCAT TATCTTAAGA 301 AAAGAGTTGC CTCTGTTCCT CTTCCTGTTT CTATTATTGC TGAAGTTGAT CTTTACAAAT 361 TTGATCCTTG GGAACTACCT GCTAAGGCGA CATTTGGAGA ACAAGAATGG TATTTCTTCA 421 GTCCAAGAGA TAGAAAATAT CCTAACGGGG CGCGCCCAAA TAGGGCGGCA ACTTCCGGTT 481 ATTGGAAGGC TACCGGAACC GACAAGCCG Predicted gene structure (within gDNA segment 107621 to 102132): Exon 1 106095 106076 ( 20 n); cDNA 97 114 ( 18 n); score: 0.800 Intron 1 106075 105010 (1066 n); Pd: 0.969 (s: 0), Pa: 0.000 (s: 0) Exon 2 105009 104988 ( 22 n); cDNA 115 136 ( 22 n); score: 0.773 Intron 2 104987 104904 ( 84 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 104903 104852 ( 52 n); cDNA 137 187 ( 51 n); score: 0.644 Intron 3 104851 103692 (1160 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.76) Exon 4 103691 103498 ( 194 n); cDNA 188 381 ( 194 n); score: 0.753 Intron 4 103497 102870 ( 628 n); Pd: 0.997 (s: 0.88), Pa: 0.995 (s: 0.84) Exon 5 102869 102742 ( 128 n); cDNA 382 509 ( 128 n); score: 0.891 MATCH C10SLe0045H11.1- SGN-E264715+ 0.785 416 0.817 C PGS_C10SLe0045H11.1-_SGN-E264715+ (106095 106076,105009 104988,104903 104852,103691 103498,102869 102742) Alignment (genomic DNA sequence = upper lines): TTGCTTTTTT CTTTAATTAG GTAAGTGCAA CATCCATAAA TATTTTTCAA GATATTTTTC 106036 || ||||||| ||| |||| TTTCTTTTTT TTTT-ATTA- .......... .......... .......... .......... 114 CGTAATTCAT TCACAATTTT TTTTAAAAGA ATTATTTAGT GTTTACCTGT TTACATTTAT 105976 .......... .......... .......... .......... .......... .......... 114 ATTGAAATTA ATTAAATTTA AAATCATAAT TAAGAGTGGA GAAATTTCAT TTATCAATAA 105916 .......... .......... .......... .......... .......... .......... 114 CCTAAATACT TAATTCTCCA ATGAAACTAA CTATAAGATT TTTCTCCCTA ATAATAGGTT 105856 .......... .......... .......... .......... .......... .......... 114 CATTTATTTT AGATTGGTCA TGTGAAGGAT ATGTGTTGAA ACAAATCCCT AAATTTCTTA 105796 .......... .......... .......... .......... .......... .......... 114 TTCTTGTTAA GTTTAAAAAT AAAAATGCTA AAAAAATTTT TTACAATGAA AGAATATTAT 105736 .......... .......... .......... .......... .......... .......... 114 AAAACTAATT AAATCCGTCC AAATTATATC ATACGTATCG CGAGGATTCA TCATAAATTG 105676 .......... .......... .......... .......... .......... .......... 114 ACTACTAGTC GTCGTATTTG TTGTCTCTAT CCGAGTTCAA GATCAACGAT ACTATATATA 105616 .......... .......... .......... .......... .......... .......... 114 AATACATCGA TAGAGACAAG TTGTTGTAAA AAAATTCCAA GTGTGACACT AGGCCAAATT 105556 .......... .......... .......... .......... .......... .......... 114 TGTCCAAAGA GTAGCCTAGA AATGCTTTCT TATCTTATTA TCTGTCTGTC GAGTCATGTC 105496 .......... .......... .......... .......... .......... .......... 114 AAACTTCTGT TGTAAAATTT AATCACTCCT AATTCGATAT TTCAAAATCG AGTTTTGCAA 105436 .......... .......... .......... .......... .......... .......... 114 ATTAAGAAAA TTTCATTGTA GGACGAGTTT CCTCTTTAAT TAAATGATTC ATATGAGCGC 105376 .......... .......... .......... .......... .......... .......... 114 CACGAATTCA ACTGAATATC AAATAAAATA CTGAATGATT GATATAGATC TCTTTATATA 105316 .......... .......... .......... .......... .......... .......... 114 TCTTGTGCAG GATAAAGTAG TTCTGCGTAT ATGCCCCTTT TACTCGATTG TCCACGTGTT 105256 .......... .......... .......... .......... .......... .......... 114 GGTACCAACT TGCATGCGTA TCGATTAATT ATATTGCCTA ATTTTCAGTT ATCAAGCTCT 105196 .......... .......... .......... .......... .......... .......... 114 AATTACATCA TTGTCATGTA TTAATCTAAT CACCTCTTCA ATTTATGCTA ATGACGACCT 105136 .......... .......... .......... .......... .......... .......... 114 CCACTTCTAA TTTAATATTA ACATATACAC TATTTATTTT TCCACTAACG ACTAATTTTT 105076 .......... .......... .......... .......... .......... .......... 114 TTAATTTTTT TTTGACAATA TTTATATAGT AATTTCTGCT AAGGTTAATT CTTAGTTTTT 105016 .......... .......... .......... .......... .......... .......... 114 ATCAACTCAT TTTTACTATA TATAATTAAT GTCCTTCTCA AAGCCTAATA ACGCCCATTT 104956 | || ||||| |||| || ||| ......TTAT TTTTATTATA TAGTTTTA.. .......... .......... .......... 136 TACGTTAAGT TAAACTGTTA GAATTGACGA AATTAGGATT AAATTTTAAA AAGAATCTTG 104896 |||| | .......... .......... .......... .......... .......... ..TAATCAGG 144 -AAATATGAT TTAAATATAT TCACAAAATT ATATCAGAAA AATAAATAAA AAATTTAAAA 104837 | ||| |||||||||| | ||| || ||||| || |||| TCGCTCTGA- TTAAATATAT TTGAAAATTT TTATCA-AAT AATAT..... .......... 187 TAAAATTGTG TAAGAAAAAA AGAATTGTTA TCGATTTTAA ATAAAAAAGA AAAAATAACA 104777 .......... .......... .......... .......... .......... .......... 187 TATATAAAAC GAAAAAAAAT ATATTTTTCT TAGTGAGTAG ATTTATCCAC ACTAGTAATT 104717 .......... .......... .......... .......... .......... .......... 187 GTGTGATTAT TGTAACATAT TATTCATTAG TCTAGGTACG AATTAATTGA CTCGAATATT 104657 .......... .......... .......... .......... .......... .......... 187 ATCGTCCTAA TAAAAAAAAT ATTCTTAATT TTGTTCTATT TTTTAATTAG CTTATTCCAA 104597 .......... .......... .......... .......... .......... .......... 187 AGTAAAAAAA ATCAAAGACA TGTTCTTATA TTTATGAACT TCTTAATTAA ACATTTATAA 104537 .......... .......... .......... .......... .......... .......... 187 TTACCACAAG AATCTCAAGA CATGTTTATA ATTAATAAAT TTAGATGTCT GTTTTTCTTT 104477 .......... .......... .......... .......... .......... .......... 187 CTAATTAAAT TAATATAATT TTACCTTTGA TAGCATATAT TTATAATTAC CATAGAATTC 104417 .......... .......... .......... .......... .......... .......... 187 AAAGCATGTT TACTGTTAGA TAAATTTAAA TATCTTCTAT ATTTTCTAAA ACCTTTGGCG 104357 .......... .......... .......... .......... .......... .......... 187 TCCAATTCGA TCAAAGTATG TCCACACAAT TCAATACTAC AAAAACTTTC TATATAAAGA 104297 .......... .......... .......... .......... .......... .......... 187 GAGATAATAG TCAAAATACA TCTGAAATGT TACGTTTTTT GTAAAATTTC TATTTAAATT 104237 .......... .......... .......... .......... .......... .......... 187 ATCACGTGCT CAATTTTTTT TACCTAAATC ATTATCAACT ATTTAACAAT ACACATCTCA 104177 .......... .......... .......... .......... .......... .......... 187 ATTATCAGTT ATTTTCTTTT TCTACTTGAA TACAGTAATA TTTCAGATAA AAAAAGAAAA 104117 .......... .......... .......... .......... .......... .......... 187 AGAGAAACAA TTGATAATTA TATTAACGCG TGATTTGATA AATAATTAAT GAGTTTATGT 104057 .......... .......... .......... .......... .......... .......... 187 ATAAAAAATG AACACCTCAT GGTTCAAAAA AAAATCTTGC AAAAATATAA TACTCTAGAT 103997 .......... .......... .......... .......... .......... .......... 187 ACTATTTTTT ACCATTAAAG TATATATTTC AATATATATA TATATATATA TATATATATA 103937 .......... .......... .......... .......... .......... .......... 187 TAAACAAAAA TATATGTAAT GGCATTACTG TAAATTCAGT GTTGCCTTAT ACCATATATA 103877 .......... .......... .......... .......... .......... .......... 187 AGTAAGTGTG GGGGCTAAAT TAACCAACTA AATTCCTTCT TGTTTATCAT TTTCTCTCTT 103817 .......... .......... .......... .......... .......... .......... 187 CCCAAAAAAA AATCCCAAAA TTTAATCATA ATACAATTCG AATTTATCAA CCTCGTACTA 103757 .......... .......... .......... .......... .......... .......... 187 CGTACATATT TTTGTTGGTA CGTAAAATAC TGAATTCAGG TCAACTCAAA CATCGTAAAT 103697 .......... .......... .......... .......... .......... .......... 187 TGTGATTTCT TTATGGAAAG TACGGATTCA TCAACCGGGA CACGTCATCA GCCTCAACTC 103637 | | | ||||| || ||| |||||| |||||||| | | |||||| || ||| | .....TGTGG TCATGGAGAG TACCGATTCA TCAACCGGCT CTCATCATCA ACCACAATTG 242 CCACCGGGGT TTCGATTCCA CCCGACGGAC GAAGAACTCA TCGTCCACTA CCTCAAAAAA 103577 ||||| || | ||||||| || || || || ||||| || | || || || || || ||| CCACCTGGAT TTCGATTTCA TCCAACTGAT GAAGAGCTTG TGGTTCATTA TCTTAAGAAA 302 CGAGTCGCCG GCGCTCCGAT TCCGGTGGAT ATTATTGGTG AAATTGATCT TTATAAGTTT 103517 |||| ||| | ||| | ||| || | ||||||| || || ||||||| ||| || ||| AGAGTTGCCT CTGTTCCTCT TCCTGTTTCT ATTATTGCTG AAGTTGATCT TTACAAATTT 362 GATCCATGGG AACTCCCTGG TACTATTTTC ACCACTATAC TATATTTTCT TGCCCTATAA 103457 ||||| |||| |||| |||| GATCCTTGGG AACTACCTG. .......... .......... .......... .......... 381 CTTATATATA GGGGAAAAAG ATCGGAGTCA GCGATGAACA ATTATTGTGT CTAAATTAAA 103397 .......... .......... .......... .......... .......... .......... 381 TTTTAAATAT GCAATAGATT GGTGACGAAT TTCGTTGCTA ATTAATTTTT TAGTGATAAA 103337 .......... .......... .......... .......... .......... .......... 381 TTAATATTTT TCCCCTTTTT AATCTTCATG TTTTTTATCA CAAAGTTTTC TATGACCAAC 103277 .......... .......... .......... .......... .......... .......... 381 TTATAAAGAT TTGAACTCGA TCAATTTTTT TTTTAGAATG AATGAACTTA TGTTATATAT 103217 .......... .......... .......... .......... .......... .......... 381 AGTGATATTT TAAATGCTTT TTTATATTTT CAAAAGATAT CCACGATAAC GTGTAAAAAG 103157 .......... .......... .......... .......... .......... .......... 381 TGAATTTGCA AAAAAAAAAA TGTAGTACCT TTTATTTAAT TTTATTGTAG ATAATTTAGA 103097 .......... .......... .......... .......... .......... .......... 381 TTTTAATTTT GAATTTGTTT AATTTAAATT CTGAATCGTA TAATATTTAT TTAATTTCTA 103037 .......... .......... .......... .......... .......... .......... 381 TTTTTTGAGT TTTTTTTTGG AGGGTGCTTA AAAAGTAGTA TTCACAAATA TAAAGTAGTG 102977 .......... .......... .......... .......... .......... .......... 381 GACAAACATA AAGTAGTGGA CCCATAATTT ATTTTTTTAA AAATTATATT AAAACTATTT 102917 .......... .......... .......... .......... .......... .......... 381 GTTAAGTTTA AATTCTGAAT TATCTTCTTA TCATGTGTTT AACGCAGCTA AGGCAATATT 102857 ||| |||| | ||| .......... .......... .......... .......... .......CTA AGGCGACATT 394 CGGAGAGCAA GAATGGTTCT TTTTTAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGAG 102797 ||||| ||| ||||||| | | || ||||| |||||||||| |||||||||| |||||||| | TGGAGAACAA GAATGGTATT TCTTCAGTCC AAGAGATAGA AAATATCCTA ACGGGGCGCG 454 GCCAAATCGG GCTGCAACAT CGGGTTATTG GAAGGCTACC GGAACCGACA AGCCG 102742 |||||| || || ||||| | | |||||||| |||||||||| |||||||||| ||||| CCCAAATAGG GCGGCAACTT CCGGTTATTG GAAGGCTACC GGAACCGACA AGCCG 509 hqPGS_C10SLe0045H11.1-_SGN-E264715+ (105009 104988,104903 104852,103691 103498,102869 102742) ******************************************************************************** EST sequence 119 +strand 426 n (File: SGN-E276646+) 1 TTTTCTCTCT TCCCAAAAAA AAATCCCAAA ATTTAATCAT AATACAATTC GAATTTATCA 61 ACCTCGTACA TATTTTTGTT GGTACGTAAA ATACTGAATT CAGGTCAACT CAAACATCGT 121 AAATTGTGAT TTCTTTATGG AAAGTACGGA TTCATCAACC GGGACACGTC ATCAGCCTCA 181 ACTCCCACCG GGGTTTCGAT TTCACCCGAC GGACGAAGAA CTCATCGTCC ACTACCTTAA 241 AAAACGAGTC GCCGGCGCTC CGATTCCGGT GGATATTATT GGTGAAATTG ATCTTTATAA 301 GTTTGATCCA TGGGAACTCC CTGCTAAGGC AATATTCGGA GAGCAAGAAT GGTTCTTTTT 361 TAGTCCAAGA GATAGAAAAT ATTCTAACGG GGCGAGGCCA AATCGGGCTG CAACATCGGG 421 TTATTG Predicted gene structure (within gDNA segment 104427 to 102157): Exon 1 103827 103498 ( 330 n); cDNA 1 323 ( 323 n); score: 0.973 Intron 1 103497 102870 ( 628 n); Pd: 0.997 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 102869 102767 ( 103 n); cDNA 324 426 ( 103 n); score: 0.990 MATCH C10SLe0045H11.1- SGN-E276646+ 0.977 433 1.016 C PGS_C10SLe0045H11.1-_SGN-E276646+ (103827 103498,102869 102767) Alignment (genomic DNA sequence = upper lines): TTTTCTCTCT TCCCAAAAAA AAATCCCAAA ATTTAATCAT AATACAATTC GAATTTATCA 103768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTCTCT TCCCAAAAAA AAATCCCAAA ATTTAATCAT AATACAATTC GAATTTATCA 60 ACCTCGTACT ACGTACATAT TTTTGTTGGT ACGTAAAATA CTGAATTCAG GTCAACTCAA 103708 ||||||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTCGTAC- ------ATAT TTTTGTTGGT ACGTAAAATA CTGAATTCAG GTCAACTCAA 113 ACATCGTAAA TTGTGATTTC TTTATGGAAA GTACGGATTC ATCAACCGGG ACACGTCATC 103648 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCGTAAA TTGTGATTTC TTTATGGAAA GTACGGATTC ATCAACCGGG ACACGTCATC 173 AGCCTCAACT CCCACCGGGG TTTCGATTCC ACCCGACGGA CGAAGAACTC ATCGTCCACT 103588 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| AGCCTCAACT CCCACCGGGG TTTCGATTTC ACCCGACGGA CGAAGAACTC ATCGTCCACT 233 ACCTCAAAAA ACGAGTCGCC GGCGCTCCGA TTCCGGTGGA TATTATTGGT GAAATTGATC 103528 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTAAAAA ACGAGTCGCC GGCGCTCCGA TTCCGGTGGA TATTATTGGT GAAATTGATC 293 TTTATAAGTT TGATCCATGG GAACTCCCTG GTACTATTTT CACCACTATA CTATATTTTC 103468 |||||||||| |||||||||| |||||||||| TTTATAAGTT TGATCCATGG GAACTCCCTG .......... .......... .......... 323 TTGCCCTATA ACTTATATAT AGGGGAAAAA GATCGGAGTC AGCGATGAAC AATTATTGTG 103408 .......... .......... .......... .......... .......... .......... 323 TCTAAATTAA ATTTTAAATA TGCAATAGAT TGGTGACGAA TTTCGTTGCT AATTAATTTT 103348 .......... .......... .......... .......... .......... .......... 323 TTAGTGATAA ATTAATATTT TTCCCCTTTT TAATCTTCAT GTTTTTTATC ACAAAGTTTT 103288 .......... .......... .......... .......... .......... .......... 323 CTATGACCAA CTTATAAAGA TTTGAACTCG ATCAATTTTT TTTTTAGAAT GAATGAACTT 103228 .......... .......... .......... .......... .......... .......... 323 ATGTTATATA TAGTGATATT TTAAATGCTT TTTTATATTT TCAAAAGATA TCCACGATAA 103168 .......... .......... .......... .......... .......... .......... 323 CGTGTAAAAA GTGAATTTGC AAAAAAAAAA ATGTAGTACC TTTTATTTAA TTTTATTGTA 103108 .......... .......... .......... .......... .......... .......... 323 GATAATTTAG ATTTTAATTT TGAATTTGTT TAATTTAAAT TCTGAATCGT ATAATATTTA 103048 .......... .......... .......... .......... .......... .......... 323 TTTAATTTCT ATTTTTTGAG TTTTTTTTTG GAGGGTGCTT AAAAAGTAGT ATTCACAAAT 102988 .......... .......... .......... .......... .......... .......... 323 ATAAAGTAGT GGACAAACAT AAAGTAGTGG ACCCATAATT TATTTTTTTA AAAATTATAT 102928 .......... .......... .......... .......... .......... .......... 323 TAAAACTATT TGTTAAGTTT AAATTCTGAA TTATCTTCTT ATCATGTGTT TAACGCAGCT 102868 || .......... .......... .......... .......... .......... ........CT 325 AAGGCAATAT TCGGAGAGCA AGAATGGTTC TTTTTTAGTC CAAGAGATAG AAAATATCCT 102808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || AAGGCAATAT TCGGAGAGCA AGAATGGTTC TTTTTTAGTC CAAGAGATAG AAAATATTCT 385 AACGGGGCGA GGCCAAATCG GGCTGCAACA TCGGGTTATT G 102767 |||||||||| |||||||||| |||||||||| |||||||||| | AACGGGGCGA GGCCAAATCG GGCTGCAACA TCGGGTTATT G 426 hqPGS_C10SLe0045H11.1-_SGN-E276646+ (103827 103498,102869 102767) ******************************************************************************** EST sequence 91 +strand 213 n (File: SGN-E264205+) 1 TTGGTACGTA AAATACTGAA TTCAGGTCAA CTCAAACATC GTAAATTGTG ATTTCTTTAT 61 GGAAAGTACG GATTCATCAA CCGGGACACG TCATCAGCCT CAACTCCCAC CGGGGTTTCG 121 ATTCCACCCG ACGGACGAAG AACTCATCGT CCACTACCTC AAAAAACGAG TCGCCGGCGC 181 TCCGATTCCG GTGGATATTA TTGGAAAAAT TGA Predicted gene structure (within gDNA segment 104342 to 102839): Exon 1 103742 103530 ( 213 n); cDNA 1 213 ( 213 n); score: 0.991 MATCH C10SLe0045H11.1- SGN-E264205+ 0.991 213 1.000 C PGS_C10SLe0045H11.1-_SGN-E264205+ (103742 103530) Alignment (genomic DNA sequence = upper lines): TTGGTACGTA AAATACTGAA TTCAGGTCAA CTCAAACATC GTAAATTGTG ATTTCTTTAT 103683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTACGTA AAATACTGAA TTCAGGTCAA CTCAAACATC GTAAATTGTG ATTTCTTTAT 60 GGAAAGTACG GATTCATCAA CCGGGACACG TCATCAGCCT CAACTCCCAC CGGGGTTTCG 103623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAAGTACG GATTCATCAA CCGGGACACG TCATCAGCCT CAACTCCCAC CGGGGTTTCG 120 ATTCCACCCG ACGGACGAAG AACTCATCGT CCACTACCTC AAAAAACGAG TCGCCGGCGC 103563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCCACCCG ACGGACGAAG AACTCATCGT CCACTACCTC AAAAAACGAG TCGCCGGCGC 180 TCCGATTCCG GTGGATATTA TTGGTGAAAT TGA 103530 |||||||||| |||||||||| |||| |||| ||| TCCGATTCCG GTGGATATTA TTGGAAAAAT TGA 213 hqPGS_C10SLe0045H11.1-_SGN-E264205+ (103742 103530) Total number of EST alignments reported: 151 ________________________________________________________________________________ Predicted gene locations (18) in segment 1 to 109965: PGL 1 (+ strand): 613 8721 AGS-1 (613 2116) SCR (e 0.993) Exon 1 613 2116 (1504 n); score: 0.993 PGS (613 1475) SGN-E538363+ PGS (613 1463) SGN-E538398+ PGS (613 1462) SGN-E538544+ PGS (613 1446) SGN-E538729+ PGS (613 1432) SGN-E538366+ PGS (613 1426) SGN-E538611+ PGS (613 1406) SGN-E538539+ PGS (613 1363) SGN-E538551+ PGS (613 1350) SGN-E548037+ PGS (620 1427) SGN-E538294+ PGS (620 1387) SGN-E538364+ PGS (620 1368) SGN-E538396+ PGS (862 1670) SGN-E538325- PGS (868 1670) SGN-E538370- PGS (872 1670) SGN-E538367- PGS (872 1670) SGN-E548050- PGS (872 1670) SGN-E538414- PGS (878 1670) SGN-E538407- PGS (884 1670) SGN-E548044- PGS (909 1670) SGN-E538295- PGS (909 1670) SGN-E538541- PGS (909 1670) SGN-E539148- PGS (912 1670) SGN-E538614- PGS (941 1670) SGN-E548074- PGS (946 1670) SGN-E548026- PGS (947 1670) SGN-E538399- PGS (1001 1670) SGN-E538261- PGS (1001 1670) SGN-E538553- PGS (1012 1670) SGN-E538372- PGS (1143 1669) SGN-E267320- PGS (1403 2116) SGN-E348664- PGS (1679 2099) SGN-E239508- PGS (1867 2101) SGN-E228039- PGS (1924 2101) SGN-E236252- 3-phase translation of AGS-1 (+strand): . . . . . . 613 TTGGAAGTTCCAAGAAAAGAATGGATCTTGGTTCACTAATTCTTCCAAGTAAAATTACAA L E V P R K E W I L V H - F F Q V K L Q W K F Q E K N G S W F T N S S K - N Y K G S S K K R M D L G S L I L P S K I T . . . . . . 673 AGAGAATCAAGAAGAAAAAAAATAAGAAGCATGAAAAGGAAAATGTATAATTCTATTTGT R E S R R K K I R S M K R K M Y N S I C E N Q E E K K - E A - K G K C I I L F V K R I K K K K N K K H E K E N V - F Y L . . . . . . 733 GTATTTCTCTTTGTAGTCAAATGATCGATCGTAGAGAAACAAGATTTTGCATAATAACGA V F L F V V K - S I V E K Q D F A - - R Y F S L - S N D R S - R N K I L H N N D C I S L C S Q M I D R R E T R F C I I T . . . . . . 793 CGATATAATTTCAGACCTCAATTATGAAATTACACTGAGTATGTTAGTAATCATTGGTTC R Y N F R P Q L - N Y T E Y V S N H W F D I I S D L N Y E I T L S M L V I I G S T I - F Q T S I M K L H - V C - - S L V . . . . . . 853 GAAGCACCTTCATTGGTCTCAAGAACCCTATGGATGAAGATGTTCTCTTGTTCTCTTCCA E A P S L V S R T L W M K M F S C S L P K H L H W S Q E P Y G - R C S L V L F Q R S T F I G L K N P M D E D V L L F S S . . . . . . 913 ACAACAAACTCGACGAACATGCCTCTTCATCCGGTAATCGTATTTAATCGTAACGTTAGA T T N S T N M P L H P V I V F N R N V R Q Q T R R T C L F I R - S Y L I V T L E N N K L D E H A S S S G N R I - S - R - . . . . . . 973 AAAATCACAATAATGAGACGGATTCAACATATAAACTGCAAACGCACATGCATGTATTAA K I T I M R R I Q H I N C K R T C M Y - K S Q - - D G F N I - T A N A H A C I N K N H N N E T D S T Y K L Q T H M H V L . . . . . . 1033 TGTCCTCGGACTAGAGGTGACAATTGAACGAACTGAAGTCAAACTTGATGTCTAACATGA C P R T R G D N - T N - S Q T - C L T - V L G L E V T I E R T E V K L D V - H E M S S D - R - Q L N E L K S N L M S N M . . . . . . 1093 AACTAAACATCGATATTTGATACGAGTTCGTTCACCTAAAATTTGTTTGGATCAAAATGA N - T S I F D T S S F T - N L F G S K - T K H R Y L I R V R S P K I C L D Q N E K L N I D I - Y E F V H L K F V W I K M . . . . . . 1153 GTTCAATCCGAAGATAGATCAAATACCAAATCACATCACCTTCCTTTTCTATTTGAAGAA V Q S E D R S N T K S H H L P F L F E E F N P K I D Q I P N H I T F L F Y L K K S S I R R - I K Y Q I T S P S F S I - R . . . . . . 1213 AAAGAATGTCAAATGCATTCGACTCAAAAGTCTATCGAAAACAACCTCTCTAATAATATG K E C Q M H S T Q K S I E N N L S N N M K N V K C I R L K S L S K T T S L I I C K R M S N A F D S K V Y R K Q P L - - Y . . . . . . 1273 TACATTTTACTATTCTCAAACATCACTCGTGAGACTAAACTTTCTATATTGTTATCGTCG Y I L L F S N I T R E T K L S I L L S S T F Y Y S Q T S L V R L N F L Y C Y R R V H F T I L K H H S - D - T F Y I V I V . . . . . . 1333 ATGTATAGACGGAACTACAAAATCTTACTTACGCATTCGACAAAACTCAATAACTCGTAA M Y R R N Y K I L L T H S T K L N N S - C I D G T T K S Y L R I R Q N S I T R K D V - T E L Q N L T Y A F D K T Q - L V . . . . . . 1393 ACTTCGTATTTATATTTTAAAATCAACTATCCCGTAAAAACTATAATTTATAAACTTAAA T S Y L Y F K I N Y P V K T I I Y K L K L R I Y I L K S T I P - K L - F I N L K N F V F I F - N Q L S R K N Y N L - T - . . . . . . 1453 ATTCTAGCTTTGTTCCGCTCTTTTAAATACATAATTACCTCAAAATGTAGGCAATCACTT I L A L F R S F K Y I I T S K C R Q S L F - L C S A L L N T - L P Q N V G N H F N S S F V P L F - I H N Y L K M - A I T . . . . . . 1513 TCCCTTACTCGCTTCCACGGAGATGAATTATCAGCCGCCGTCGCGCCACCGCCGTAATCT S L T R F H G D E L S A A V A P P P - S P L L A S T E M N Y Q P P S R H R R N L F P Y S L P R R - I I S R R R A T A V I . . . . . . 1573 CCGATAGCTGATAAATCTCCATAACTGCCGGAAGAACTCACCGAACGCACCGGCGACGGC P I A D K S P - L P E E L T E R T G D G R - L I N L H N C R K N S P N A P A T A S D S - - I S I T A G R T H R T H R R R . . . . . . 1633 GAGGGAGAGAAATCACTCGACGGAGAAGAAGATAAAGGAACAACTTGATTCTCATCGTCA E G E K S L D G E E D K G T T - F S S S R E R N H S T E K K I K E Q L D S H R H R G R E I T R R R R R - R N N L I L I V . . . . . . 1693 TAATCATCGATTTCACTGTCAGTACTCACGTATTCATCTTCATCATTATCCGCTTCGGTT - S S I S L S V L T Y S S S S L S A S V N H R F H C Q Y S R I H L H H Y P L R F I I I D F T V S T H V F I F I I I R F G . . . . . . 1753 TGATAATTTTCTTCGATTGTTTCCCCAATTTGTTCAATTGGATCTGGGTTTTGGATGCAG - - F S S I V S P I C S I G S G F W M Q D N F L R L F P Q F V Q L D L G F G C R L I I F F D C F P N L F N W I W V L D A . . . . . . 1813 GAATTGCAGAGAGAGAAAGTAGGAGAAAGCTTTGGACCAGAGGCATTCCATGGAGTTGAA E L Q R E K V G E S F G P E A F H G V E N C R E R K - E K A L D Q R H S M E L N G I A E R E S R R K L W T R G I P W S - . . . . . . 1873 TTTTGACATGAATGACAAAGGAGATTTCTCGAGTGTTTAGCTACGAGAAAATTAGCAGAA F - H E - Q R R F L E C L A T R K L A E F D M N D K G D F S S V - L R E N - Q N I L T - M T K E I S R V F S Y E K I S R . . . . . . 1933 TGAACTTTCGAATCGCAATCCCAGCAAAGGTTAGCTTGATCTGATTCACAATACATCATT - T F E S Q S Q Q R L A - S D S Q Y I I E L S N R N P S K G - L D L I H N T S L M N F R I A I P A K V S L I - F T I H H . . . . . . 1993 GATTTGTTCTCACCACATAACTCACAATTCATCATCTTCACTTCTCTTTCTATCAATCAA D L F S P H N S Q F I I F T S L S I N Q I C S H H I T H N S S S S L L F L S I K - F V L T T - L T I H H L H F S F Y Q S . . . . . . 2053 AAAATTCAAACAATTTTAGGGTTTTTTTTGAAAGGAATGTTTAAAATTGGGGGTTTTGGA K I Q T I L G F F L K G M F K I G G F G K F K Q F - G F F - K E C L K L G V L E K N S N N F R V F F E R N V - N W G F W . 2113 GTTT V F S Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1+_PGL-1_AGS-1_PPS_1 (1088 1429) (frame '2'; 339 bp, 113 residues) 1 HETKHRYLIR VRSPKICLDQ NEFNPKIDQI PNHITFLFYL KKKNVKCIRL KSLSKTTSLI 61 ICTFYYSQTS LVRLNFLYCY RRCIDGTTKS YLRIRQNSIT RKLRIYILKS TIP- >C10SLe0045H11.1+_PGL-1_AGS-1_PPS_2 (1580 1834) (frame '2'; 252 bp, 84 residues) 1 LINLHNCRKN SPNAPATARE RNHSTEKKIK EQLDSHRHNH RFHCQYSRIH LHHYPLRFDN 61 FLRLFPQFVQ LDLGFGCRNC RERK- >C10SLe0045H11.1+_PGL-1_AGS-1_PPS_3 (820 1032) (frame '1'; 210 bp, 70 residues) 1 NYTEYVSNHW FEAPSLVSRT LWMKMFSCSL PTTNSTNMPL HPVIVFNRNV RKITIMRRIQ 61 HINCKRTCMY - 3-phase translation of AGS-1 (-strand): . . . . . . 2116 AAACTCCAAAACCCCCAATTTTAAACATTCCTTTCAAAAAAAACCCTAAAATTGTTTGAA K L Q N P Q F - T F L S K K T L K L F E N S K T P N F K H S F Q K K P - N C L N T P K P P I L N I P F K K N P K I V - . . . . . . 2056 TTTTTTGATTGATAGAAAGAGAAGTGAAGATGATGAATTGTGAGTTATGTGGTGAGAACA F F D - - K E K - R - - I V S Y V V R T F L I D R K R S E D D E L - V M W - E Q I F - L I E R E V K M M N C E L C G E N . . . . . . 1996 AATCAATGATGTATTGTGAATCAGATCAAGCTAACCTTTGCTGGGATTGCGATTCGAAAG N Q - C I V N Q I K L T F A G I A I R K I N D V L - I R S S - P L L G L R F E S K S M M Y C E S D Q A N L C W D C D S K . . . . . . 1936 TTCATTCTGCTAATTTTCTCGTAGCTAAACACTCGAGAAATCTCCTTTGTCATTCATGTC F I L L I F S - L N T R E I S F V I H V S F C - F S R S - T L E K S P L S F M S V H S A N F L V A K H S R N L L C H S C . . . . . . 1876 AAAATTCAACTCCATGGAATGCCTCTGGTCCAAAGCTTTCTCCTACTTTCTCTCTCTGCA K I Q L H G M P L V Q S F L L L S L S A K F N S M E C L W S K A F S Y F L S L Q Q N S T P W N A S G P K L S P T F S L C . . . . . . 1816 ATTCCTGCATCCAAAACCCAGATCCAATTGAACAAATTGGGGAAACAATCGAAGAAAATT I P A S K T Q I Q L N K L G K Q S K K I F L H P K P R S N - T N W G N N R R K L N S C I Q N P D P I E Q I G E T I E E N . . . . . . 1756 ATCAAACCGAAGCGGATAATGATGAAGATGAATACGTGAGTACTGACAGTGAAATCGATG I K P K R I M M K M N T - V L T V K S M S N R S G - - - R - I R E Y - Q - N R - Y Q T E A D N D E D E Y V S T D S E I D . . . . . . 1696 ATTATGACGATGAGAATCAAGTTGTTCCTTTATCTTCTTCTCCGTCGAGTGATTTCTCTC I M T M R I K L F L Y L L L R R V I S L L - R - E S S C S F I F F S V E - F L S D Y D D E N Q V V P L S S S P S S D F S . . . . . . 1636 CCTCGCCGTCGCCGGTGCGTTCGGTGAGTTCTTCCGGCAGTTATGGAGATTTATCAGCTA P R R R R C V R - V L P A V M E I Y Q L L A V A G A F G E F F R Q L W R F I S Y P S P S P V R S V S S S G S Y G D L S A . . . . . . 1576 TCGGAGATTACGGCGGTGGCGCGACGGCGGCTGATAATTCATCTCCGTGGAAGCGAGTAA S E I T A V A R R R L I I H L R G S E - R R L R R W R D G G - - F I S V E A S K I G D Y G G G A T A A D N S S P W K R V . . . . . . 1516 GGGAAAGTGATTGCCTACATTTTGAGGTAATTATGTATTTAAAAGAGCGGAACAAAGCTA G K V I A Y I L R - L C I - K S G T K L G K - L P T F - G N Y V F K R A E Q S - R E S D C L H F E V I M Y L K E R N K A . . . . . . 1456 GAATTTTAAGTTTATAAATTATAGTTTTTACGGGATAGTTGATTTTAAAATATAAATACG E F - V Y K L - F L R D S - F - N I N T N F K F I N Y S F Y G I V D F K I - I R R I L S L - I I V F T G - L I L K Y K Y . . . . . . 1396 AAGTTTACGAGTTATTGAGTTTTGTCGAATGCGTAAGTAAGATTTTGTAGTTCCGTCTAT K F T S Y - V L S N A - V R F C S S V Y S L R V I E F C R M R K - D F V V P S I E V Y E L L S F V E C V S K I L - F R L . . . . . . 1336 ACATCGACGATAACAATATAGAAAGTTTAGTCTCACGAGTGATGTTTGAGAATAGTAAAA T S T I T I - K V - S H E - C L R I V K H R R - Q Y R K F S L T S D V - E - - N Y I D D N N I E S L V S R V M F E N S K . . . . . . 1276 TGTACATATTATTAGAGAGGTTGTTTTCGATAGACTTTTGAGTCGAATGCATTTGACATT C T Y Y - R G C F R - T F E S N A F D I V H I I R E V V F D R L L S R M H L T F M Y I L L E R L F S I D F - V E C I - H . . . . . . 1216 CTTTTTCTTCAAATAGAAAAGGAAGGTGATGTGATTTGGTATTTGATCTATCTTCGGATT L F L Q I E K E G D V I W Y L I Y L R I F F F K - K R K V M - F G I - S I F G L S F S S N R K G R - C D L V F D L S S D . . . . . . 1156 GAACTCATTTTGATCCAAACAAATTTTAGGTGAACGAACTCGTATCAAATATCGATGTTT E L I L I Q T N F R - T N S Y Q I S M F N S F - S K Q I L G E R T R I K Y R C L - T H F D P N K F - V N E L V S N I D V . . . . . . 1096 AGTTTCATGTTAGACATCAAGTTTGACTTCAGTTCGTTCAATTGTCACCTCTAGTCCGAG S F M L D I K F D F S S F N C H L - S E V S C - T S S L T S V R S I V T S S P R - F H V R H Q V - L Q F V Q L S P L V R . . . . . . 1036 GACATTAATACATGCATGTGCGTTTGCAGTTTATATGTTGAATCCGTCTCATTATTGTGA D I N T C M C V C S L Y V E S V S L L - T L I H A C A F A V Y M L N P S H Y C D G H - Y M H V R L Q F I C - I R L I I V . . . . . . 976 TTTTTCTAACGTTACGATTAAATACGATTACCGGATGAAGAGGCATGTTCGTCGAGTTTG F F - R Y D - I R L P D E E A C S S S L F S N V T I K Y D Y R M K R H V R R V C I F L T L R L N T I T G - R G M F V E F . . . . . . 916 TTGTTGGAAGAGAACAAGAGAACATCTTCATCCATAGGGTTCTTGAGACCAATGAAGGTG L L E E N K R T S S S I G F L R P M K V C W K R T R E H L H P - G S - D Q - R C V V G R E Q E N I F I H R V L E T N E G . . . . . . 856 CTTCGAACCAATGATTACTAACATACTCAGTGTAATTTCATAATTGAGGTCTGAAATTAT L R T N D Y - H T Q C N F I I E V - N Y F E P M I T N I L S V I S - L R S E I I A S N Q - L L T Y S V - F H N - G L K L . . . . . . 796 ATCGTCGTTATTATGCAAAATCTTGTTTCTCTACGATCGATCATTTGACTACAAAGAGAA I V V I M Q N L V S L R S I I - L Q R E S S L L C K I L F L Y D R S F D Y K E K Y R R Y Y A K S C F S T I D H L T T K R . . . . . . 736 ATACACAAATAGAATTATACATTTTCCTTTTCATGCTTCTTATTTTTTTTCTTCTTGATT I H K - N Y T F S F S C F L F F F F L I Y T N R I I H F P F H A S Y F F S S - F N T Q I E L Y I F L F M L L I F F L L D . . . . . . 676 CTCTTTGTAATTTTACTTGGAAGAATTAGTGAACCAAGATCCATTCTTTTCTTGGAACTT L F V I L L G R I S E P R S I L F L E L S L - F Y L E E L V N Q D P F F S W N F S L C N F T W K N - - T K I H S F L G T . 616 CCAA P Q S Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-1_AGS-1_PPS_1 (2048 1440) (frame '0'; 606 bp, 202 residues) 1 LIEREVKMMN CELCGENKSM MYCESDQANL CWDCDSKVHS ANFLVAKHSR NLLCHSCQNS 61 TPWNASGPKL SPTFSLCNSC IQNPDPIEQI GETIEENYQT EADNDEDEYV STDSEIDDYD 121 DENQVVPLSS SPSSDFSPSP SPVRSVSSSG SYGDLSAIGD YGGGATAADN SSPWKRVRES 181 DCLHFEVIMY LKERNKARIL SL- >C10SLe0045H11.1-_PGL-1_AGS-1_PPS_2 (1083 880) (frame '2'; 201 bp, 67 residues) 1 TSSLTSVRSI VTSSPRTLIH ACAFAVYMLN PSHYCDFSNV TIKYDYRMKR HVRRVCCWKR 61 TREHLHP- AGS-2 (1644 1709,1813 1961,8378 8721) SCR (e 1.000 d 0.866 a 0.996,e 1.000 d 0.988 a 0.383,e 1.000) Exon 1 1644 1709 ( 66 n); score: 1.000 Intron 1 1710 1812 ( 103 n); Pd: 0.866 Pa: 0.996 Exon 2 1813 1961 ( 149 n); score: 1.000 Intron 2 1962 8377 (6416 n); Pd: 0.988 Pa: 0.383 Exon 3 8378 8721 ( 344 n); score: 1.000 PGS (1644 1709,1813 1961,8378 8721) SGN-E244515+ PGS (1644 1709,1813 1961,8378 8603) SGN-E236650+ 3-phase translation of AGS-2 (+strand): . . . . . . 1644 ATCACTCGACGGAGAAGAAGATAAAGGAACAACTTGATTCTCATCGTCATAATCATCGAT I T R R R R R - R N N L I L I V I I I D S L D G E E D K G T T - F S S S - S S I H S T E K K I K E Q L D S H R H N H R . : . . . . . 1704 TTCACT : GAATTGCAGAGAGAGAAAGTAGGAGAAAGCTTTGGACCAGAGGCATTCCATGGA F T : E L Q R E K V G E S F G P E A F H G S L : N C R E R K - E K A L D Q R H S M E F H : - I A E R E S R R K L W T R G I P W . . . . . . 1867 GTTGAATTTTGACATGAATGACAAAGGAGATTTCTCGAGTGTTTAGCTACGAGAAAATTA V E F - H E - Q R R F L E C L A T R K L L N F D M N D K G D F S S V - L R E N - S - I L T - M T K E I S R V F S Y E K I . . . . : . . 1927 GCAGAATGAACTTTCGAATCGCAATCCCAGCAAAG : CCAAATCACAGAGTTGACAGCAGTG A E - T F E S Q S Q Q S : Q I T E L T A V Q N E L S N R N P S K : A K S Q S - Q Q C S R M N F R I A I P A K : P N H R V D S S . . . . . . 8403 TGCCACATTTTACATTATAAAACATGAAAGGGTCTTTCATTTCAATTAGAAAATGGAACA C H I L H Y K T - K G L S F Q L E N G T A T F Y I I K H E R V F H F N - K M E Q V P H F T L - N M K G S F I S I R K W N . . . . . . 8463 AACTGATAACCAGCAGCAAATTGCATAAATTTACATATAAAGACCCGAAAATAACTAAGC N - - P A A N C I N L H I K T R K - L S T D N Q Q Q I A - I Y I - R P E N N - A K L I T S S K L H K F T Y K D P K I T K . . . . . . 8523 AAACATTAGGATGAATTTTGCACATACCTTGACGACCATCACAAGCATCATGGTACTCGC K H - D E F C T Y L D D H H K H H G T R N I R M N F A H T L T T I T S I M V L A Q T L G - I L H I P - R P S Q A S W Y S . . . . . . 8583 CTTCCTCCTCGTTTTCTTTTGAGGCAGATGCCACAGGAACTCCGCCCTTACGAGCAGCAT L P P R F L L R Q M P Q E L R P Y E Q H F L L V F F - G R C H R N S A L T S S I P S S S F S F E A D A T G T P P L R A A . . . . . . 8643 TTCCACCATCCTTCTCATCAGGATACCTCACAACCACAACAGGGCAAACACAATGCCTAA F H H P S H Q D T S Q P Q Q G K H N A - S T I L L I R I P H N H N R A N T M P N F P P S F S S G Y L T T T T G Q T Q C L . . 8703 CACAGTAATCACTAACACT H S N H - H T V I T N T T Q - S L T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (5893 5979) SCR (e 0.908) Exon 1 5893 5979 ( 87 n); score: 0.908 PGS (5893 5979) SGN-E323373- 3-phase translation of AGS-3 (+strand): . . . . . . 5893 TTTTGACCAATTCTCGATTTGTGCGGATTATCCTTGCGCAGGGGCCATGCTAATCTTCTC F - P I L D L C G L S L R R G H A N L L F D Q F S I C A D Y P C A G A M L I F S L T N S R F V R I I L A Q G P C - S S . . . 5953 TGTATCGTTCCAATTTTATCGGATGTC C I V P I L S D V V S F Q F Y R M L Y R S N F I G C Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 5979 GACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATAA D I R - N W N D T E K I S M A P A Q G - T S D K I G T I Q R R L A W P L R K D N H P I K L E R Y R E D - H G P C A R I . . . 5919 TCCGCACAAATCGAGAATTGGTCAAAA S A Q I E N W S K P H K S R I G Q I R T N R E L V K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (- strand): 1322 613 AGS-1 (1322 613) SCR (e 0.990) Exon 1 1322 613 ( 710 n); score: 0.990 PGS (1322 613) SGN-E538252- PGS (1300 613) SGN-E548068- PGS (1286 613) SGN-E538412- PGS (1214 613) SGN-E538259- PGS (1179 613) SGN-E548105- PGS (1248 625) SGN-E538405- PGS (1217 626) SGN-E538371- PGS (1207 634) SGN-E538369- 3-phase translation of AGS-1 (-strand): . . . . . . 1322 AATATAGAAAGTTTAGTCTCACGAGTGATGTTTGAGAATAGTAAAATGTACATATTATTA N I E S L V S R V M F E N S K M Y I L L I - K V - S H E - C L R I V K C T Y Y - Y R K F S L T S D V - E - - N V H I I . . . . . . 1262 GAGAGGTTGTTTTCGATAGACTTTTGAGTCGAATGCATTTGACATTCTTTTTCTTCAAAT E R L F S I D F - V E C I - H S F S S N R G C F R - T F E S N A F D I L F L Q I R E V V F D R L L S R M H L T F F F F K . . . . . . 1202 AGAAAAGGAAGGTGATGTGATTTGGTATTTGATCTATCTTCGGATTGAACTCATTTTGAT R K G R - C D L V F D L S S D - T H F D E K E G D V I W Y L I Y L R I E L I L I - K R K V M - F G I - S I F G L N S F - . . . . . . 1142 CCAAACAAATTTTAGGTGAACGAACTCGTATCAAATATCGATGTTTAGTTTCATGTTAGA P N K F - V N E L V S N I D V - F H V R Q T N F R - T N S Y Q I S M F S F M L D S K Q I L G E R T R I K Y R C L V S C - . . . . . . 1082 CATCAAGTTTGACTTCAGTTCGTTCAATTGTCACCTCTAGTCCGAGGACATTAATACATG H Q V - L Q F V Q L S P L V R G H - Y M I K F D F S S F N C H L - S E D I N T C T S S L T S V R S I V T S S P R T L I H . . . . . . 1022 CATGTGCGTTTGCAGTTTATATGTTGAATCCGTCTCATTATTGTGATTTTTCTAACGTTA H V R L Q F I C - I R L I I V I F L T L M C V C S L Y V E S V S L L - F F - R Y A C A F A V Y M L N P S H Y C D F S N V . . . . . . 962 CGATTAAATACGATTACCGGATGAAGAGGCATGTTCGTCGAGTTTGTTGTTGGAAGAGAA R L N T I T G - R G M F V E F V V G R E D - I R L P D E E A C S S S L L L E E N T I K Y D Y R M K R H V R R V C C W K R . . . . . . 902 CAAGAGAACATCTTCATCCATAGGGTTCTTGAGACCAATGAAGGTGCTTCGAACCAATGA Q E N I F I H R V L E T N E G A S N Q - K R T S S S I G F L R P M K V L R T N D T R E H L H P - G S - D Q - R C F E P M . . . . . . 842 TTACTAACATACTCAGTGTAATTTCATAATTGAGGTCTGAAATTATATCGTCGTTATTAT L L T Y S V - F H N - G L K L Y R R Y Y Y - H T Q C N F I I E V - N Y I V V I M I T N I L S V I S - L R S E I I S S L L . . . . . . 782 GCAAAATCTTGTTTCTCTACGATCGATCATTTGACTACAAAGAGAAATACACAAATAGAA A K S C F S T I D H L T T K R N T Q I E Q N L V S L R S I I - L Q R E I H K - N C K I L F L Y D R S F D Y K E K Y T N R . . . . . . 722 TTATACATTTTCCTTTTCATGCTTCTTATTTTTTTTCTTCTTGATTCTCTTTGTAATTTT L Y I F L F M L L I F F L L D S L C N F Y T F S F S C F L F F F F L I L F V I L I I H F P F H A S Y F F S S - F S L - F . . . . . 662 ACTTGGAAGAATTAGTGAACCAAGATCCATTCTTTTCTTGGAACTTCCAA T W K N - - T K I H S F L G T S L G R I S E P R S I L F L E L P Y L E E L V N Q D P F F S W N F Q Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-2_AGS-1_PPS_1 (1083 880) (frame '0'; 201 bp, 67 residues) 1 TSSLTSVRSI VTSSPRTLIH ACAFAVYMLN PSHYCDFSNV TIKYDYRMKR HVRRVCCWKR 61 TREHLHP- 3-phase translation of AGS-1 (+strand): . . . . . . 613 TTGGAAGTTCCAAGAAAAGAATGGATCTTGGTTCACTAATTCTTCCAAGTAAAATTACAA L E V P R K E W I L V H - F F Q V K L Q W K F Q E K N G S W F T N S S K - N Y K G S S K K R M D L G S L I L P S K I T . . . . . . 673 AGAGAATCAAGAAGAAAAAAAATAAGAAGCATGAAAAGGAAAATGTATAATTCTATTTGT R E S R R K K I R S M K R K M Y N S I C E N Q E E K K - E A - K G K C I I L F V K R I K K K K N K K H E K E N V - F Y L . . . . . . 733 GTATTTCTCTTTGTAGTCAAATGATCGATCGTAGAGAAACAAGATTTTGCATAATAACGA V F L F V V K - S I V E K Q D F A - - R Y F S L - S N D R S - R N K I L H N N D C I S L C S Q M I D R R E T R F C I I T . . . . . . 793 CGATATAATTTCAGACCTCAATTATGAAATTACACTGAGTATGTTAGTAATCATTGGTTC R Y N F R P Q L - N Y T E Y V S N H W F D I I S D L N Y E I T L S M L V I I G S T I - F Q T S I M K L H - V C - - S L V . . . . . . 853 GAAGCACCTTCATTGGTCTCAAGAACCCTATGGATGAAGATGTTCTCTTGTTCTCTTCCA E A P S L V S R T L W M K M F S C S L P K H L H W S Q E P Y G - R C S L V L F Q R S T F I G L K N P M D E D V L L F S S . . . . . . 913 ACAACAAACTCGACGAACATGCCTCTTCATCCGGTAATCGTATTTAATCGTAACGTTAGA T T N S T N M P L H P V I V F N R N V R Q Q T R R T C L F I R - S Y L I V T L E N N K L D E H A S S S G N R I - S - R - . . . . . . 973 AAAATCACAATAATGAGACGGATTCAACATATAAACTGCAAACGCACATGCATGTATTAA K I T I M R R I Q H I N C K R T C M Y - K S Q - - D G F N I - T A N A H A C I N K N H N N E T D S T Y K L Q T H M H V L . . . . . . 1033 TGTCCTCGGACTAGAGGTGACAATTGAACGAACTGAAGTCAAACTTGATGTCTAACATGA C P R T R G D N - T N - S Q T - C L T - V L G L E V T I E R T E V K L D V - H E M S S D - R - Q L N E L K S N L M S N M . . . . . . 1093 AACTAAACATCGATATTTGATACGAGTTCGTTCACCTAAAATTTGTTTGGATCAAAATGA N - T S I F D T S S F T - N L F G S K - T K H R Y L I R V R S P K I C L D Q N E K L N I D I - Y E F V H L K F V W I K M . . . . . . 1153 GTTCAATCCGAAGATAGATCAAATACCAAATCACATCACCTTCCTTTTCTATTTGAAGAA V Q S E D R S N T K S H H L P F L F E E F N P K I D Q I P N H I T F L F Y L K K S S I R R - I K Y Q I T S P S F S I - R . . . . . . 1213 AAAGAATGTCAAATGCATTCGACTCAAAAGTCTATCGAAAACAACCTCTCTAATAATATG K E C Q M H S T Q K S I E N N L S N N M K N V K C I R L K S L S K T T S L I I C K R M S N A F D S K V Y R K Q P L - - Y . . . . . 1273 TACATTTTACTATTCTCAAACATCACTCGTGAGACTAAACTTTCTATATT Y I L L F S N I T R E T K L S I T F Y Y S Q T S L V R L N F L Y V H F T I L K H H S - D - T F Y I Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1+_PGL-2_AGS-1_PPS_1 (1088 1321) (frame '2'; 234 bp, 78 residues) 1 HETKHRYLIR VRSPKICLDQ NEFNPKIDQI PNHITFLFYL KKKNVKCIRL KSLSKTTSLI 61 ICTFYYSQTS LVRLNFLY >C10SLe0045H11.1+_PGL-2_AGS-1_PPS_2 (820 1032) (frame '1'; 210 bp, 70 residues) 1 NYTEYVSNHW FEAPSLVSRT LWMKMFSCSL PTTNSTNMPL HPVIVFNRNV RKITIMRRIQ 61 HINCKRTCMY - PGL 3 (- strand): 9338 6402 AGS-1 (9338 8550,8027 7939,6660 6402) SCR (e 0.996 d 0.999 a 0.960,e 1.000 d 0.995 a 0.986,e 0.981) Exon 1 9338 8550 ( 789 n); score: 0.996 Intron 1 8549 8028 ( 522 n); Pd: 0.999 Pa: 0.960 Exon 2 8027 7939 ( 89 n); score: 1.000 Intron 2 7938 6661 (1278 n); Pd: 0.995 Pa: 0.986 Exon 3 6660 6402 ( 259 n); score: 0.981 PGS (8749 8550,8027 7939,6660 6402) SGN-E391964- PGS (8690 8550,8027 7939,6660 6500) SGN-E287049+ PGS (8984 8550,8027 7944) SGN-E310178+ PGS (8790 8550,8027 7948) SGN-E335947+ PGS (9275 8715) SGN-E391715+ PGS (9274 8765) SGN-E271319+ PGS (9338 8766) SGN-E329725+ PGS (9251 8916) SGN-E210256+ PGS (9338 8919) SGN-E329642+ PGS (9312 8991) SGN-E308308+ 3-phase translation of AGS-1 (-strand): . . . . . . 9338 GTCAACATAGAAAAAAAAGGTCATTTCAATTGTAATTTTAAAAACCCTAACCCTAGCTCC V N I E K K G H F N C N F K N P N P S S S T - K K K V I S I V I L K T L T L A P Q H R K K R S F Q L - F - K P - P - L . . . . . . 9278 GATCAAACAGAATGCAGAAACAGCCACCGCACACGGCGGATTCCGGCATGCCAAACCTCG D Q T E C R N S H R T R R I P A C Q T S I K Q N A E T A T A H G G F R H A K P R R S N R M Q K Q P P H T A D S G M P N L . . . . . . 9218 CGAACATCAAAATCAAGTGTTCATCACCACGTTTTCCACCACCGACAACTCCTTCCGCCA R T S K S S V H H H V F H H R Q L L P P E H Q N Q V F I T T F S T T D N S F R H A N I K I K C S S P R F P P P T T P S A . . . . . . 9158 CCGACACTCCGACCGCCGGTGCGCAGCGCAAAATTGGAATCGCCGTTGATCTTAGTGACG P T L R P P V R S A K L E S P L I L V T R H S D R R C A A Q N W N R R - S - - R T D T P T A G A Q R K I G I A V D L S D . . . . . . 9098 AATCTGCCTTCGCCGTCAAGTGGGCTGTCCACCACTACCTCCGTCCTGGTGACGCAGTTA N L P S P S S G L S T T T S V L V T Q L I C L R R Q V G C P P L P P S W - R S Y E S A F A V K W A V H H Y L R P G D A V . . . . . . 9038 TCCTTGTCCACGTCCGCCCTACCTCCGTACTCTACGGTGCTGATTGGGGTTCTGTTGATG S L S T S A L P P Y S T V L I G V L L M P C P R P P Y L R T L R C - L G F C - C I L V H V R P T S V L Y G A D W G S V D . . . . . . 8978 TATCCATCGCCGATACTGATAACATAGAGACTCAAAAGAAGCTTGAAGATGATTTTGATG Y P S P I L I T - R L K R S L K M I L M I H R R Y - - H R D S K E A - R - F - C V S I A D T D N I E T Q K K L E D D F D . . . . . . 8918 CGTTTACTTCTGCTAAGTCTTCTGATTTGGCTCAGCCACTTGTTGAGGCGCAAATTCCGT R L L L L S L L I W L S H L L R R K F R V Y F C - V F - F G S A T C - G A N S V A F T S A K S S D L A Q P L V E A Q I P . . . . . . 8858 ACAAAATTCATATTGTGAAGGATCATGATATGAAGGAAAGGCTATGTCTTGAGGTTGAGA T K F I L - R I M I - R K G Y V L R L R Q N S Y C E G S - Y E G K A M S - G - E Y K I H I V K D H D M K E R L C L E V E . . . . . . 8798 GGCTAGGATTGAGTGCAGTTATCATGGGTAGTCGAGGATTCGGGGCTACTAAGAGAGGAA G - D - V Q L S W V V E D S G L L R E E A R I E C S Y H G - S R I R G Y - E R K R L G L S A V I M G S R G F G A T K R G . . . . . . 8738 ATGATGGGAGGCTTGGAAGTGTTAGTGATTACTGTGTTAGGCATTGTGTTTGCCCTGTTG M M G G L E V L V I T V L G I V F A L L - W E A W K C - - L L C - A L C L P C C N D G R L G S V S D Y C V R H C V C P V . . . . . . 8678 TGGTTGTGAGGTATCCTGATGAGAAGGATGGTGGAAATGCTGCTCGTAAGGGCGGAGTTC W L - G I L M R R M V E M L L V R A E F G C E V S - - E G W W K C C S - G R S S V V V R Y P D E K D G G N A A R K G G V . . . . . . 8618 CTGTGGCATCTGCCTCAAAAGAAAACGAGGAGGAAGGCGAGTACCATGATGCTTGTGATG L W H L P Q K K T R R K A S T M M L V M C G I C L K R K R G G R R V P - C L - W P V A S A S K E N E E E G E Y H D A C D . : . . . . . 8558 GTCGTCAAG : GATCACAACCAGCCATAGGAAAAGGCTCGAGAACTGACAATTGACTTAGAG V V K : D H N Q P - E K A R E L T I D L E S S R : I T T S H R K R L E N - Q L T - S G R Q : G S Q P A I G K G S R T D N - L R . . . . : . . 7976 TTGCTTAAGAAGTCCTTTGAAGAGACAGTGAACGTAAG : ATTCCAGGTGCGGAAGTTGGGT L L K K S F E E T V N V R : F Q V R K L G C L R S P L K R Q - T - : D S R C G S W V V A - E V L - R D S E R K : I P G A E V G . . . . . . 6638 TAAGCAATCCTTTTAGCCGACTTATGTGAAAACCACTTGGTATTTTGTTATATCCGGAGT - A I L L A D L C E N H L V F C Y I R S K Q S F - P T Y V K T T W Y F V I S G V L S N P F S R L M - K P L G I L L Y P E . . . . . . 6578 CTCATCTTCTTTAACTGAATTGTGGTTTCCTGTCTTTCAGTTTAGTTTACAGTAGTTCGC L I F F N - I V V S C L S V - F T V V R S S S L T E L W F P V F Q F S L Q - F A S H L L - L N C G F L S F S L V Y S S S . . . . . . 6518 TAGATGATGTTGTATCTCTAAAGATTGTTGTCTTCATAGAGTTTCACTTAAACCTGCCCC - M M L Y L - R L L S S - S F T - T C P R - C C I S K D C C L H R V S L K P A P L D D V V S L K I V V F I E F H L N L P . . . . . . 6458 TTTTTATCACTTCTTATCTTTATGGTGCAAATATAAAATCTTACTTTTAAGATGTAA F L S L L I F M V Q I - N L T F K M - F Y H F L S L W C K Y K I L L L R C L F I T S Y L Y G A N I K S Y F - D V Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-3_AGS-1_PPS_1 (9282 8550,8027 7984) (frame '0'; 774 bp, 258 residues) 1 LRSNRMQKQP PHTADSGMPN LANIKIKCSS PRFPPPTTPS ATDTPTAGAQ RKIGIAVDLS 61 DESAFAVKWA VHHYLRPGDA VILVHVRPTS VLYGADWGSV DVSIADTDNI ETQKKLEDDF 121 DAFTSAKSSD LAQPLVEAQI PYKIHIVKDH DMKERLCLEV ERLGLSAVIM GSRGFGATKR 181 GNDGRLGSVS DYCVRHCVCP VVVVRYPDEK DGGNAARKGG VPVASASKEN EEEGEYHDAC 241 DGRQGSQPAI GKGSRTDN- AGS-2 (8434 7939,6660 6402) SCR (e 1.000 d 0.995 a 0.986,e 1.000) Exon 1 8434 7939 ( 496 n); score: 1.000 Intron 1 7938 6661 (1278 n); Pd: 0.995 Pa: 0.986 Exon 2 6660 6402 ( 259 n); score: 1.000 PGS (8433 7939,6660 6402) SGN-E257428+ PGS (8432 7939,6660 6403) SGN-E257429- PGS (8434 7939,6660 6612) SGN-E551003+ 3-phase translation of AGS-2 (-strand): . . . . . . 8434 CCCTTTCATGTTTTATAATGTAAAATGTGGCACACTGCTGTCAACTCTGTGATTTGGCTG P F H V L - C K M W H T A V N S V I W L P F M F Y N V K C G T L L S T L - F G C L S C F I M - N V A H C C Q L C D L A . . . . . . 8374 TGTGTTATACCAAAAGGAAAATTAGGTGGGTACTCCCCAAAATAGTCACATTCAAGAAAG C V I P K G K L G G Y S P K - S H S R K V L Y Q K E N - V G T P Q N S H I Q E R V C Y T K R K I R W V L P K I V T F K K . . . . . . 8314 GTAATGCCTGTTACAGTTTATGCATATGATTTTGACATGCAATAGAGTGCAGGAAATCCG V M P V T V Y A Y D F D M Q - S A G N P - C L L Q F M H M I L T C N R V Q E I R G N A C Y S L C I - F - H A I E C R K S . . . . . . 8254 TGATACTTGTAACAATTATGATATGTTTGGCAACAATATCGTTAGAGTATATAGCTTTAA - Y L - Q L - Y V W Q Q Y R - S I - L - D T C N N Y D M F G N N I V R V Y S F K V I L V T I M I C L A T I S L E Y I A L . . . . . . 8194 AAGTTCCAAAATGTGAGTGCATTTTTGGAAAATGGAATAAATGACTCGTGTTGAAATGGG K F Q N V S A F L E N G I N D S C - N G S S K M - V H F W K M E - M T R V E M G K V P K C E C I F G K W N K - L V L K W . . . . . . 8134 AACTTGAACTGAAGCACCCTCTTGAAAACTTAGTATTACAATGCTCAAACATGTGTTCTG N L N - S T L L K T - Y Y N A Q T C V L T - T E A P S - K L S I T M L K H V F - E L E L K H P L E N L V L Q C S N M C S . . . . . . 8074 AATCCTGAGGTCAATTTTGTTTTAAATTGTCATTCTCCATGAAGCAGGATCACAACCAGC N P E V N F V L N C H S P - S R I T T S I L R S I L F - I V I L H E A G S Q P A E S - G Q F C F K L S F S M K Q D H N Q . . . . . . 8014 CATAGGAAAAGGCTCGAGAACTGACAATTGACTTAGAGTTGCTTAAGAAGTCCTTTGAAG H R K R L E N - Q L T - S C L R S P L K I G K G S R T D N - L R V A - E V L - R P - E K A R E L T I D L E L L K K S F E . . : . . . . 7954 AGACAGTGAACGTAAG : ATTCCAGGTGCGGAAGTTGGGTTAAGCAATCCTTTTAGCCGACT R Q - T - : D S R C G S W V K Q S F - P T D S E R K : I P G A E V G L S N P F S R L E T V N V R : F Q V R K L G - A I L L A D . . . . . . 6616 TATGTGAAAACCACTTGGTATTTTGTTATATCCGGAGTCTCATCTTCTTTAACTGAATTG Y V K T T W Y F V I S G V S S S L T E L M - K P L G I L L Y P E S H L L - L N C L C E N H L V F C Y I R S L I F F N - I . . . . . . 6556 TGGTTTCCTGTCTTTCAGTTTAGTTTACAGTAGTTCGCTAGATGATGTTGTATCTCTAAA W F P V F Q F S L Q - F A R - C C I S K G F L S F S L V Y S S S L D D V V S L K V V S C L S V - F T V V R - M M L Y L - . . . . . . 6496 GATTGTTGTCTTCATAGAGTTTCACTTAAACCTGCCCCTTTTTATCACTTCTTATCTTTA D C C L H R V S L K P A P F Y H F L S L I V V F I E F H L N L P L F I T S Y L Y R L L S S - S F T - T C P F L S L L I F . . . . 6436 TGGTGCAAATATAAAATCTTACTTTTAAGATGTAA W C K Y K I L L L R C G A N I K S Y F - D V M V Q I - N L T F K M - Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (+ strand): 15934 16895 AGS-1 (15934 16370) SCR (e 1.000) Exon 1 15934 16370 ( 437 n); score: 1.000 PGS (15934 16370) SGN-E240128+ 3-phase translation of AGS-1 (+strand): . . . . . . 15934 GCCCTATAAATCATCAGCATTCATTGTGCCAACCTCAAGCTGTTTGGTTGAGCTGATAGA A L - I I S I H C A N L K L F G - A D R P Y K S S A F I V P T S S C L V E L I E P I N H Q H S L C Q P Q A V W L S - - . . . . . . 15994 GACCCCATTTCTCGTAATAACCTTAAGTGATATTGAGATTGTCAACTTGGAGAGAGTTGG D P I S R N N L K - Y - D C Q L G E S W T P F L V I T L S D I E I V N L E R V G R P H F S - - P - V I L R L S T W R E L . . . . . . 16054 ATTTGGGCAGAAGAATTTTGATATGGCAATTGTCTTCAAGGACTTCAAGCGTGATGTCAT I W A E E F - Y G N C L Q G L Q A - C H F G Q K N F D M A I V F K D F K R D V M D L G R R I L I W Q L S S R T S S V M S . . . . . . 16114 GCGCATAGATTCAATTCCTGTCTCTGCACTTGATGGCATCAAGGAGTGGCTTGACACAAC A H R F N S C L C T - W H Q G V A - H N R I D S I P V S A L D G I K E W L D T T C A - I Q F L S L H L M A S R S G L T Q . . . . . . 16174 TGACATCAAGTATTATGAGAGCAAGATGAACCTGAATTGGCGTGAAGTACTGAAGACCAT - H Q V L - E Q D E P E L A - S T E D H D I K Y Y E S K M N L N W R E V L K T I L T S S I M R A R - T - I G V K Y - R P . . . . . . 16234 AACTGAAGATCCCCAAAGGTTTATAGATGAAGGTGGTTGGGAATTTTTAAACATAGATGC N - R S P K V Y R - R W L G I F K H R C T E D P Q R F I D E G G W E F L N I D A - L K I P K G L - M K V V G N F - T - M . . . . . . 16294 TTCTGACTCAGAATCTGAAAATTCGGAGGAGTCAGACCAAGGCTATGAACCCTCAGACGC F - L R I - K F G G V R P R L - T L R R S D S E S E N S E E S D Q G Y E P S D A L L T Q N L K I R R S Q T K A M N P Q T . . 16354 TGAACCTGAGTCAGATT - T - V R E P E S D L N L S Q I Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1+_PGL-4_AGS-1_PPS_1 (15935 16369) (frame '2'; 435 bp, 145 residues) 1 PYKSSAFIVP TSSCLVELIE TPFLVITLSD IEIVNLERVG FGQKNFDMAI VFKDFKRDVM 61 RIDSIPVSAL DGIKEWLDTT DIKYYESKMN LNWREVLKTI TEDPQRFIDE GGWEFLNIDA 121 SDSESENSEE SDQGYEPSDA EPESD 3-phase translation of AGS-1 (-strand): . . . . . . 16370 AATCTGACTCAGGTTCAGCGTCTGAGGGTTCATAGCCTTGGTCTGACTCCTCCGAATTTT N L T Q V Q R L R V H S L G L T P P N F I - L R F S V - G F I A L V - L L R I F S D S G S A S E G S - P W S D S S E F . . . . . . 16310 CAGATTCTGAGTCAGAAGCATCTATGTTTAAAAATTCCCAACCACCTTCATCTATAAACC Q I L S Q K H L C L K I P N H L H L - T R F - V R S I Y V - K F P T T F I Y K P S D S E S E A S M F K N S Q P P S S I N . . . . . . 16250 TTTGGGGATCTTCAGTTATGGTCTTCAGTACTTCACGCCAATTCAGGTTCATCTTGCTCT F G D L Q L W S S V L H A N S G S S C S L G I F S Y G L Q Y F T P I Q V H L A L L W G S S V M V F S T S R Q F R F I L L . . . . . . 16190 CATAATACTTGATGTCAGTTGTGTCAAGCCACTCCTTGATGCCATCAAGTGCAGAGACAG H N T - C Q L C Q A T P - C H Q V Q R Q I I L D V S C V K P L L D A I K C R D R S - Y L M S V V S S H S L M P S S A E T . . . . . . 16130 GAATTGAATCTATGCGCATGACATCACGCTTGAAGTCCTTGAAGACAATTGCCATATCAA E L N L C A - H H A - S P - R Q L P Y Q N - I Y A H D I T L E V L E D N C H I K G I E S M R M T S R L K S L K T I A I S . . . . . . 16070 AATTCTTCTGCCCAAATCCAACTCTCTCCAAGTTGACAATCTCAATATCACTTAAGGTTA N S S A Q I Q L S P S - Q S Q Y H L R L I L L P K S N S L Q V D N L N I T - G Y K F F C P N P T L S K L T I S I S L K V . . . . . . 16010 TTACGAGAAATGGGGTCTCTATCAGCTCAACCAAACAGCTTGAGGTTGGCACAATGAATG L R E M G S L S A Q P N S L R L A Q - M Y E K W G L Y Q L N Q T A - G W H N E C I T R N G V S I S S T K Q L E V G T M N . . 15950 CTGATGATTTATAGGGC L M I Y R - - F I G A D D L - G Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-4_AGS-1_PPS_1 (16185 15937) (frame '0'; 246 bp, 82 residues) 1 YLMSVVSSHS LMPSSAETGI ESMRMTSRLK SLKTIAISKF FCPNPTLSKL TISISLKVIT 61 RNGVSISSTK QLEVGTMNAD DL- AGS-2 (16506 16895) SCR (e 0.987) Exon 1 16506 16895 ( 390 n); score: 0.987 PGS (16506 16895) SGN-E233859- 3-phase translation of AGS-2 (+strand): . . . . . . 16506 AGAAAGGAGATGAACCTGACAGTGAGGATGAGAGGAGGAGAAAGAAGAACTTTGGCAAGT R K E M N L T V R M R G G E R R T L A S E R R - T - Q - G - E E E K E E L W Q V K G D E P D S E D E R R R K K N F G K . . . . . . 16566 CCCGATCCGGTCCAAGTTCTGCTGGTTCTAAGCGAATGAAGTTCAGGTAGTTTTGCTGAT P D P V Q V L L V L S E - S S G S F A D P I R S K F C W F - A N E V Q V V L L I S R S G P S S A G S K R M K F R - F C - . . . . . . 16626 TCAATTCCGTCTTAGAACATTACAAGTAGGTCTTCCTTGGAAGTTTTAGTTAGTTATCAA S I P S - N I T S R S S L E V L V S Y Q Q F R L R T L Q V G L P W K F - L V I K F N S V L E H Y K - V F L G S F S - L S . . . . . . 16686 GTTCAGTTTTCTCTTGTATATTACTTCTAAATTGTTTCTCTTTGCACTCCACTTTGGGTT V Q F S L V Y Y F - I V S L C T P L W V F S F L L Y I T S K L F L F A L H F G L S S V F S C I L L L N C F S L H S T L G . . . . . . 16746 GTTAGACGCCGGTGGAGTTTGTCAGACTAGGTTCAGGTTCAAATGTTTCTGTTTACCTTC V R R R W S L S D - V Q V Q M F L F T F L D A G G V C Q T R F R F K C F C L P S C - T P V E F V R L G S G S N V S V Y L . . . . . . 16806 GTTCAGCTAGATATCATGTTTTTATGTATGCGTTTACAGTTGGCTGTGCGCGCAAACTTC V Q L D I M F L C M R L Q L A V R A N F F S - I S C F Y V C V Y S W L C A Q T S R S A R Y H V F M Y A F T V G C A R K L . . . 16866 TCATATTGAATTCCAACTGGAAACTTCTCC S Y - I P T G N F S H I E F Q L E T S L I L N S N W K L L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 16895 GGAGAAGTTTCCAGTTGGAATTCAATATGAGAAGTTTGCGCGCACAGCCAACTGTAAACG G E V S S W N S I - E V C A H S Q L - T E K F P V G I Q Y E K F A R T A N C K R R S F Q L E F N M R S L R A Q P T V N . . . . . . 16835 CATACATAAAAACATGATATCTAGCTGAACGAAGGTAAACAGAAACATTTGAACCTGAAC H T - K H D I - L N E G K Q K H L N L N I H K N M I S S - T K V N R N I - T - T A Y I K T - Y L A E R R - T E T F E P E . . . . . . 16775 CTAGTCTGACAAACTCCACCGGCGTCTAACAACCCAAAGTGGAGTGCAAAGAGAAACAAT L V - Q T P P A S N N P K W S A K R N N - S D K L H R R L T T Q S G V Q R E T I P S L T N S T G V - Q P K V E C K E K Q . . . . . . 16715 TTAGAAGTAATATACAAGAGAAAACTGAACTTGATAACTAACTAAAACTTCCAAGGAAGA L E V I Y K R K L N L I T N - N F Q G R - K - Y T R E N - T - - L T K T S K E D F R S N I Q E K T E L D N - L K L P R K . . . . . . 16655 CCTACTTGTAATGTTCTAAGACGGAATTGAATCAGCAAAACTACCTGAACTTCATTCGCT P T C N V L R R N - I S K T T - T S F A L L V M F - D G I E S A K L P E L H S L T Y L - C S K T E L N Q Q N Y L N F I R . . . . . . 16595 TAGAACCAGCAGAACTTGGACCGGATCGGGACTTGCCAAAGTTCTTCTTTCTCCTCCTCT - N Q Q N L D R I G T C Q S S S F S S S R T S R T W T G S G L A K V L L S P P L L E P A E L G P D R D L P K F F F L L L . . . 16535 CATCCTCACTGTCAGGTTCATCTCCTTTCT H P H C Q V H L L S I L T V R F I S F S S S L S G S S P F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (- strand): 17751 17299 AGS-1 (17751 17299) SCR (e 1.000) Exon 1 17751 17299 ( 453 n); score: 1.000 PGS (17684 17299) SGN-E237057- PGS (17630 17299) SGN-E236870- PGS (17751 17364) SGN-E228536- 3-phase translation of AGS-1 (-strand): . . . . . . 17751 GGTAAGTTTCTTGGAATCGAAAGGATGATACATGTTCTCGTTTTCTTTTAAGACCAACTT G K F L G I E R M I H V L V F F - D Q L V S F L E S K G - Y M F S F S F K T N L - V S W N R K D D T C S R F L L R P T . . . . . . 17691 GTCATTTCGTGCATCAAAATGCAGCACAAAGCTTAGCAATGCTGAAATTCATTGGTTTGA V I S C I K M Q H K A - Q C - N S L V - S F R A S K C S T K L S N A E I H W F E C H F V H Q N A A Q S L A M L K F I G L . . . . . . 17631 GATCCTAAAGTTTGATAAATGTTGACATGTTAGCAACCTCCATTCGATGTAGCTTGCTGA D P K V - - M L T C - Q P P F D V A C - I L K F D K C - H V S N L H S M - L A D R S - S L I N V D M L A T S I R C S L L . . . . . . 17571 TATGATCCTGGTTAGCCCCGTTAACACAGAAATCATCGCGGAAGGATCAAAACGTCTGTT Y D P G - P R - H R N H R G R I K T S V M I L V S P V N T E I I A E G S K R L L I - S W L A P L T Q K S S R K D Q N V C . . . . . . 17511 GTTTTCCTCTGAAAAATATGACTTTTGTGTGTTCTGTTTCCTTTTACCATATTGGTTTAG V F L - K I - L L C V L F P F T I L V - F S S E K Y D F C V F C F L L P Y W F S C F P L K N M T F V C S V S F Y H I G L . . . . . . 17451 TATTTGTTTCCTACAATGGATGTCTTGTTTTTCCTTTCTTAGAATGTAATATTTGTCAAG Y L F P T M D V L F F L S - N V I F V K I C F L Q W M S C F S F L R M - Y L S S V F V S Y N G C L V F P F L E C N I C Q . . . . . . 17391 CTGTATTTCAATTTTATGCTTTTCCCCTGCGTTACTCTTTTTAGCTGTTAAATGTAATAC L Y F N F M L F P C V T L F S C - M - Y C I S I L C F S P A L L F L A V K C N T A V F Q F Y A F P L R Y S F - L L N V I . . . . 17331 TAAAATATTTATGCCATTCATCACTAGTGTCAC - N I Y A I H H - C H K I F M P F I T S V L K Y L C H S S L V S Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-5_AGS-1_PPS_1 (17566 17348) (frame '0'; 216 bp, 72 residues) 1 SWLAPLTQKS SRKDQNVCCF PLKNMTFVCS VSFYHIGLVF VSYNGCLVFP FLECNICQAV 61 FQFYAFPLRY SF- 3-phase translation of AGS-1 (+strand): . . . . . . 17299 GTGACACTAGTGATGAATGGCATAAATATTTTAGTATTACATTTAACAGCTAAAAAGAGT V T L V M N G I N I L V L H L T A K K S - H - - - M A - I F - Y Y I - Q L K R V D T S D E W H K Y F S I T F N S - K E . . . . . . 17359 AACGCAGGGGAAAAGCATAAAATTGAAATACAGCTTGACAAATATTACATTCTAAGAAAG N A G E K H K I E I Q L D K Y Y I L R K T Q G K S I K L K Y S L T N I T F - E R - R R G K A - N - N T A - Q I L H S K K . . . . . . 17419 GAAAAACAAGACATCCATTGTAGGAAACAAATACTAAACCAATATGGTAAAAGGAAACAG E K Q D I H C R K Q I L N Q Y G K R K Q K N K T S I V G N K Y - T N M V K G N R G K T R H P L - E T N T K P I W - K E T . . . . . . 17479 AACACACAAAAGTCATATTTTTCAGAGGAAAACAACAGACGTTTTGATCCTTCCGCGATG N T Q K S Y F S E E N N R R F D P S A M T H K S H I F Q R K T T D V L I L P R - E H T K V I F F R G K Q Q T F - S F R D . . . . . . 17539 ATTTCTGTGTTAACGGGGCTAACCAGGATCATATCAGCAAGCTACATCGAATGGAGGTTG I S V L T G L T R I I S A S Y I E W R L F L C - R G - P G S Y Q Q A T S N G G C D F C V N G A N Q D H I S K L H R M E V . . . . . . 17599 CTAACATGTCAACATTTATCAAACTTTAGGATCTCAAACCAATGAATTTCAGCATTGCTA L T C Q H L S N F R I S N Q - I S A L L - H V N I Y Q T L G S Q T N E F Q H C - A N M S T F I K L - D L K P M N F S I A . . . . . . 17659 AGCTTTGTGCTGCATTTTGATGCACGAAATGACAAGTTGGTCTTAAAAGAAAACGAGAAC S F V L H F D A R N D K L V L K E N E N A L C C I L M H E M T S W S - K K T R T K L C A A F - C T K - Q V G L K R K R E . . . . 17719 ATGTATCATCCTTTCGATTCCAAGAAACTTACC M Y H P F D S K K L T C I I L S I P R N L H V S S F R F Q E T Y Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1+_PGL-5_AGS-1_PPS_1 (17299 17643) (frame '1'; 342 bp, 114 residues) 1 VTLVMNGINI LVLHLTAKKS NAGEKHKIEI QLDKYYILRK EKQDIHCRKQ ILNQYGKRKQ 61 NTQKSYFSEE NNRRFDPSAM ISVLTGLTRI ISASYIEWRL LTCQHLSNFR ISNQ- PGL 6 (- strand): 21148 20287 AGS-1 (21148 21052,20954 20287) SCR (e 1.000 d 0.921 a 0.998,e 0.993) Exon 1 21148 21052 ( 97 n); score: 1.000 Intron 1 21051 20955 ( 97 n); Pd: 0.921 Pa: 0.998 Exon 2 20954 20287 ( 668 n); score: 0.993 PGS (21148 21052,20954 20287) SGN-E334591+ PGS (21148 21052,20954 20321) SGN-E332654+ PGS (21088 21052,20954 20454) SGN-E245577+ 3-phase translation of AGS-1 (-strand): . . . . . . 21148 ATAACTGCTGCCTTAGGCCTTTGCTTAGAGAAGATGTCTAAAGAAGATTTAGATGCAACC I T A A L G L C L E K M S K E D L D A T - L L P - A F A - R R C L K K I - M Q P N C C L R P L L R E D V - R R F R C N . . . . : . . 21088 AAGGATGCAATGCACTGTATTCTTGAAGGAGTGAGCT : GTAGGTTGGGAAGTACTGACCAT K D A M H C I L E G V S : C R L G S T D H R M Q C T V F L K E - A : V G W E V L T I Q G C N A L Y S - R S E L : - V G K Y - P . . . . . . 20931 TTGATTCGAAAAATGGCTAGCAGTGTTGCATTAGCATTTTCCAAAGTAATTGACCCCCAA L I R K M A S S V A L A F S K V I D P Q - F E K W L A V L H - H F P K - L T P K F D S K N G - Q C C I S I F Q S N - P P . . . . . . 20871 AATCCTCTCTACCTTGACGATAGTTGCCGTGAGGAAGCTATTGACTGGGACTTTGGTTTA N P L Y L D D S C R E E A I D W D F G L I L S T L T I V A V R K L L T G T L V Y K S S L P - R - L P - G S Y - L G L W F . . . . . . 20811 TTAACCCCAGAAAAAAGATTATTGGCTAGGCCCACAGACATAGATGGAAATAAGGGTTGT L T P E K R L L A R P T D I D G N K G C - P Q K K D Y W L G P Q T - M E I R V V I N P R K K I I G - A H R H R W K - G L . . . . . . 20751 TCAACCACAGCAGCTGGAAAGGTCAATATAGCTGCCAGCAGACATGATAATAAGATGACT S T T A A G K V N I A A S R H D N K M T Q P Q Q L E R S I - L P A D M I I R - L F N H S S W K G Q Y S C Q Q T - - - D D . . . . . . 20691 AAAAAGAAGAAATTATTTGGATATGAAGCTGTTGATCCAGATGAGATCATTGATCCAGCA K K K K L F G Y E A V D P D E I I D P A K R R N Y L D M K L L I Q M R S L I Q H - K E E I I W I - S C - S R - D H - S S . . . . . . 20631 TCCCTAAATAATGAGGTTGACTCTAGTAAAGATGATGATGATAATGCAAGTGAAACTTCC S L N N E V D S S K D D D D N A S E T S P - I M R L T L V K M M M I M Q V K L P I P K - - G - L - - R - - - - C K - N F . . . . . . 20571 GAGTCCTCGAATGACTCGTCTTTGCAGCCATATGACTTGTCAGATGATGGTGCAGATCTA E S S N D S S L Q P Y D L S D D G A D L S P R M T R L C S H M T C Q M M V Q I - R V L E - L V F A A I - L V R - W C R S . . . . . . 20511 AAAAGAAATTTCTCACAGTTAGTGGATGTGATTGGAGCACTAAGGAAATCTGATGATGCT K R N F S Q L V D V I G A L R K S D D A K E I S H S - W M - L E H - G N L M M L K K K F L T V S G C D W S T K E I - - C . . . . . . 20451 GATGGTGTGAGTTCAAAATTCTTATATCCATATATCAGACAATCTGTAGAGTGTTAATTT D G V S S K F L Y P Y I R Q S V E C - F M V - V Q N S Y I H I S D N L - S V N F - W C E F K I L I S I Y Q T I C R V L I . . . . . . 20391 TGTCATCCTTCTAAGAAATGAACAAGCTTTGATGCCCTTTTTGTTTCTATGAATGATCTG C H P S K K - T S F D A L F V S M N D L V I L L R N E Q A L M P F L F L - M I C L S S F - E M N K L - C P F C F Y E - S . . . . . 20331 TACCAGCGTATAGTAGAACGAGAATTGATCAGATAACTATAAGCT Y Q R I V E R E L I R - L - A T S V - - N E N - S D N Y K V P A Y S R T R I D Q I T I S Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-6_AGS-1_PPS_1 (21148 21052,20954 20395) (frame '1'; 654 bp, 218 residues) 1 ITAALGLCLE KMSKEDLDAT KDAMHCILEG VSCRLGSTDH LIRKMASSVA LAFSKVIDPQ 61 NPLYLDDSCR EEAIDWDFGL LTPEKRLLAR PTDIDGNKGC STTAAGKVNI AASRHDNKMT 121 KKKKLFGYEA VDPDEIIDPA SLNNEVDSSK DDDDNASETS ESSNDSSLQP YDLSDDGADL 181 KRNFSQLVDV IGALRKSDDA DGVSSKFLYP YIRQSVEC- PGL 7 (+ strand): 30386 32380 AGS-1 (30386 30500,31140 31295,31997 32380) SCR (e 1.000 d 0.970 a 0.999,e 1.000 d 0.929 a 1.000,e 1.000) Exon 1 30386 30500 ( 115 n); score: 1.000 Intron 1 30501 31139 ( 639 n); Pd: 0.970 Pa: 0.999 Exon 2 31140 31295 ( 156 n); score: 1.000 Intron 2 31296 31996 ( 701 n); Pd: 0.929 Pa: 1.000 Exon 3 31997 32380 ( 384 n); score: 1.000 PGS (30386 30500,31140 31295,31997 32380) SGN-E353553+ 3-phase translation of AGS-1 (+strand): . . . . . . 30386 CCTCCTGCTGGAGTTCTTTAAGGCTGTGGCACTTCGAGATGGCCGCACTGCTGCAGAAAG P P A G V L - G C G T S R W P H C C R K L L L E F F K A V A L R D G R T A A E S S C W S S L R L W H F E M A A L L Q K . . . . . . : 30446 TACTCTTGGACTATCTAAACAACAGAGCTGTCCGAACCCAGAGGAATTCATCAAG : GATGT Y S W T I - T T E L S E P R G I H Q : G C T L G L S K Q Q S C P N P E E F I K : D V V L L D Y L N N R A V R T Q R N S S R : M . . . . . . 31145 GGAGGGAACTTTTGACTTCTGGAAGACAGCTGAAGGGGATGGCATTCATCCGGCAGATTG G G N F - L L E D S - R G W H S S G R L E G T F D F W K T A E G D G I H P A D C W R E L L T S G R Q L K G M A F I R Q I . . . . . . 31205 CATGCAACAATTGCTTGAGCAAGTTAGACGTCATCGGGTGAACATTGATGGCAACATTTG H A T I A - A S - T S S G E H - W Q H L M Q Q L L E Q V R R H R V N I D G N I C A C N N C L S K L D V I G - T L M A T F . . . . : . . 31265 CACTGTGATTGTGACTACTTTGGTGTTGGAG : GGATGGCAGCGGAAACTGGACCCTGAATA H C D C D Y F G V G : G M A A E T G P - I T V I V T T L V L E : G W Q R K L D P E Y A L - L - L L W C W R : D G S G N W T L N . . . . . . 32026 CGACGTGCTACAGACACTGCAAAAGTTGCTTTTCAAAGACGATTGGGCAGAGTCTCTCTT R R A T D T A K V A F Q R R L G R V S L D V L Q T L Q K L L F K D D W A E S L F T T C Y R H C K S C F S K T I G Q S L S . . . . . . 32086 TCACACAATTGGAGGGTTGATGGCGCCATAAAAAAGGTGTCTCATTTGCTCGCTTCCCCG S H N W R V D G A I K K V S H L L A S P H T I G G L M A P - K R C L I C S L P R F T Q L E G - W R H K K G V S F A R F P . . . . . . 32146 CCCCACCCAGCCTACCTAAAACAATCCCACAATTTTGATGGAGTAATATATAGTAAAGGG P H P A Y L K Q S H N F D G V I Y S K G P T Q P T - N N P T I L M E - Y I V K G A P P S L P K T I P Q F - W S N I - - R . . . . . . 32206 AAGATAAGTGAAATATACACACAGCATCTGGCTTTAGAGAATAAGGATTGTATACCTTTC K I S E I Y T Q H L A L E N K D C I P F R - V K Y T H S I W L - R I R I V Y L S E D K - N I H T A S G F R E - G L Y T F . . . . . . 32266 ACTCTTTTTCGTTTTAGATTTTACAATTAGATTAGTTCTAACCTTGATATCATTGTTTCT T L F R F R F Y N - I S S N L D I I V S L F F V L D F T I R L V L T L I S L F L H S F S F - I L Q L D - F - P - Y H C F . . . . . . 32326 TATTTATTTTTCGTCACAGTGTGAGACGATAATAAGTACTTATCAAGAATGTATT Y L F F V T V - D D N K Y L S R M Y I Y F S S Q C E T I I S T Y Q E C I L F I F R H S V R R - - V L I K N V Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1+_PGL-7_AGS-1_PPS_1 (30387 30500,31140 31295,31997 32116) (frame '2'; 387 bp, 129 residues) 1 LLLEFFKAVA LRDGRTAAES TLGLSKQQSC PNPEEFIKDV EGTFDFWKTA EGDGIHPADC 61 MQQLLEQVRR HRVNIDGNIC TVIVTTLVLE GWQRKLDPEY DVLQTLQKLL FKDDWAESLF 121 HTIGGLMAP- PGL 8 (- strand): 37855 35721 AGS-1 (37855 37619,37344 37258,37123 36858,36107 35721) SCR (e 1.000 d 0.981 a 0.974,e 1.000 d 0.978 a 0.994,e 1.000 d 0.999 a 0.977,e 0.994) Exon 1 37855 37619 ( 237 n); score: 1.000 Intron 1 37618 37345 ( 274 n); Pd: 0.981 Pa: 0.974 Exon 2 37344 37258 ( 87 n); score: 1.000 Intron 2 37257 37124 ( 134 n); Pd: 0.978 Pa: 0.994 Exon 3 37123 36858 ( 266 n); score: 1.000 Intron 3 36857 36108 ( 750 n); Pd: 0.999 Pa: 0.977 Exon 4 36107 35721 ( 387 n); score: 0.994 PGS (37309 37258,37123 36858,36107 35721) SGN-E548411- PGS (37855 37619,37344 37258,37123 36858) SGN-E540599+ PGS (37855 37619,37344 37258) SGN-E289570+ 3-phase translation of AGS-1 (-strand): . . . . . . 37855 GTGTTTTTGCATGCAACAACATCAAAGAAACAATCAATGCAACTAAATATGAGAAACATA V F L H A T T S K K Q S M Q L N M R N I C F C M Q Q H Q R N N Q C N - I - E T - V F A C N N I K E T I N A T K Y E K H . . . . . . 37795 GAATGGTGGATGAGAAGAAGAAGGTTCCCTAGAGAGTTAAAGCAAAGAACTAGAAATTTT E W W M R R R R F P R E L K Q R T R N F N G G - E E E G S L E S - S K E L E I F R M V D E K K K V P - R V K A K N - K F . . . . . . 37735 CAAAGGCAAAAATGGGCTGCAATGCGTGGTGTTGATGAATGTGACATGATTAGAAATATT Q R Q K W A A M R G V D E C D M I R N I K G K N G L Q C V V L M N V T - L E I F S K A K M G C N A W C - - M - H D - K Y . . . . . . : 37675 CCTGAGGGTCTAAGGAGGGACATCAAGTATCATTTGTGCTTAGACTTGGTCAAACAG : GTC P E G L R R D I K Y H L C L D L V K Q : V L R V - G G T S S I I C A - T W S N R : S S - G S K E G H Q V S F V L R L G Q T : G . . . . . . 37341 CCTTTGTTTCAACATATGGACAGTTTGGTTCTAGAGAACATATGTGATCGTGTCAAGTCA P L F Q H M D S L V L E N I C D R V K S L C F N I W T V W F - R T Y V I V S S H P F V S T Y G Q F G S R E H M - S C Q V . . . : . . . 37281 TTGATTTTCACTAAGGGGGAAACA : GTATCTAGAGAGGGTGATCCAGTACAAAGAATGTTA L I F T K G E T : V S R E G D P V Q R M L - F S L R G K Q : Y L E R V I Q Y K E C Y I D F H - G G N : S I - R G - S S T K N V . . . . . . 37087 TTTATTGTAAGAGGACACCTTCAAAGTAGCCAATATTTACGAGATGGTGTCAAAAGTTAT F I V R G H L Q S S Q Y L R D G V K S Y L L - E D T F K V A N I Y E M V S K V I I Y C K R T P S K - P I F T R W C Q K L . . . . . . 37027 TGCATGTTAGGCCCTGGAAATTTTAGTGGAGATGAACTTTTGTCCTGGTGTCTCCGGCGA C M L G P G N F S G D E L L S W C L R R A C - A L E I L V E M N F C P G V S G D L H V R P W K F - W R - T F V L V S P A . . . . . . 36967 CCTTTCGTCGAGCGGTTGCCACCGTCCTCCTCCACGTTGGTGACCCTCGAGACCACCGAG P F V E R L P P S S S T L V T L E T T E L S S S G C H R P P P R W - P S R P P R T F R R A V A T V L L H V G D P R D H R . . . . . : . 36907 GCCTTCGGCCTCGAGGCCGAAGACGTCAAGTATGTGACACAACATTTCAG : ATATACATTT A F G L E A E D V K Y V T Q H F R : Y T F P S A S R P K T S S M - H N I S : D I H L G L R P R G R R R Q V C D T T F Q : I Y I . . . . . . 36097 GTGGATGAGAAAGTGAAGAGAAGTGCAAGGTATTATTCACCAGGGTGGAGAACTTGGGGT V D E K V K R S A R Y Y S P G W R T W G W M R K - R E V Q G I I H Q G G E L G V C G - E S E E K C K V L F T R V E N L G . . . . . . 36037 GCTGTTGCTATTCAATTAGCTTGGAGAAGATATAAACATCGTTTGACACTTTCTTCTTTG A V A I Q L A W R R Y K H R L T L S S L L L L F N - L G E D I N I V - H F L L C C C C Y S I S L E K I - T S F D T F F F . . . . . . 35977 TCTTTTATTAGACCAAGAAGGCCATTGTCTCGTTGTTCGTCGCTCGGGGAGAATCGTCTA S F I R P R R P L S R C S S L G E N R L L L L D Q E G H C L V V R R S G R I V - V F Y - T K K A I V S L F V A R G E S S . . . . . . 35917 AGACTATATACTGCGTTGTTGACTTCACCAAAACCTAACCTAGATGATTTTGATTTTTAA R L Y T A L L T S P K P N L D D F D F - D Y I L R C - L H Q N L T - M I L I F N K T I Y C V V D F T K T - P R - F - F L . . . . . . 35857 TTTTTTTTTTAAAAAATAAATAATATAATAATAAGTCATATGTACTTATGTATATTTATA F F F - K I N N I I I S H M Y L C I F I F F F K K - I I - - - V I C T Y V Y L - I F F L K N K - Y N N K S Y V L M Y I Y . . . . . . 35797 ATTAGGTTGTGATTAACACTTAATGAGATACTACACATGATGGTCTCATGATATACATGA I R L - L T L N E I L H M M V S - Y T - L G C D - H L M R Y Y T - W S H D I H E N - V V I N T - - D T T H D G L M I Y M . . 35737 ATTTGGTTATTTTTTGT I W L F F F G Y F L N L V I F C Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-8_AGS-1_PPS_1 (37855 37619,37344 37258,37123 36858,36107 35858) (frame '1'; 837 bp, 279 residues) 1 VFLHATTSKK QSMQLNMRNI EWWMRRRRFP RELKQRTRNF QRQKWAAMRG VDECDMIRNI 61 PEGLRRDIKY HLCLDLVKQV PLFQHMDSLV LENICDRVKS LIFTKGETVS REGDPVQRML 121 FIVRGHLQSS QYLRDGVKSY CMLGPGNFSG DELLSWCLRR PFVERLPPSS STLVTLETTE 181 AFGLEAEDVK YVTQHFRYTF VDEKVKRSAR YYSPGWRTWG AVAIQLAWRR YKHRLTLSSL 241 SFIRPRRPLS RCSSLGENRL RLYTALLTSP KPNLDDFDF- PGL 9 (- strand): 47429 42828 AGS-1 (47429 47284,46934 46905,45615 45610,44722 44709,43411 43368,42849 42828) SCR (e 0.979 d 0.000 a 0.576,e 0.633 d 0.000 a 1.000,e 0.833 d 0.000 a 0.000,e 0.786 d 0.650 a 0.000,e 0.682 d 0.000 a 0.000,e 0.727) Exon 1 47429 47284 ( 146 n); score: 0.979 Intron 1 47283 46935 ( 349 n); Pd: 0.000 Pa: 0.576 Exon 2 46934 46905 ( 30 n); score: 0.633 Intron 2 46904 45616 (1289 n); Pd: 0.000 Pa: 1.000 Exon 3 45615 45610 ( 6 n); score: 0.833 Intron 3 45609 44723 ( 887 n); Pd: 0.000 Pa: 0.000 Exon 4 44722 44709 ( 14 n); score: 0.786 Intron 4 44708 43412 (1297 n); Pd: 0.650 Pa: 0.000 Exon 5 43411 43368 ( 44 n); score: 0.682 Intron 5 43367 42850 ( 518 n); Pd: 0.000 Pa: 0.000 Exon 6 42849 42828 ( 22 n); score: 0.727 PGS (47429 47284,46934 46905,45615 45610,44722 44709,43411 43368,42849 42828) SGN-E301194+ PGS (47429 47284) SGN-E301078+ 3-phase translation of AGS-1 (-strand): . . . . . . 47429 TGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGC C N S V F A S P - - N C S L S S R G R S V I L F L P L H N K T A P S L P V D V A - F C F C L S I I K L L P L F P W T - . . . . . . 47369 CAATTTATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATATTTTCTC Q F I G E P R K S V V L F F A F I Y F L N L L V N H V N L L S C F S R L Y I F S P I Y W - T T - I C C L V F R V Y I F S . . . : . . . : 47309 GTATTATCTCAAATTCCGCACAACAT : TTTTTCAATCCAGCATTTTCATCTTTTTGT : GTTC V L S Q I P H N I : F S I Q H F H L F V : F Y Y L K F R T T : F F Q S S I F I F L : C S R I I S N S A Q H : F F N P A F S S F C : V . : . : . . . . : 45611 AT : ATCCTCCAAAAAAT : TAAATTAAAATGGAGGAATTGCTTATTTATTACTCCTTTTCTTT : I : S S K K : L N - N G G I A Y L L L L F F : : Y P P K N : - I K M E E L L I Y Y S F S F : H : I L Q K I : K L K W R N C L F I T P F L : . . . 42849 TTGTGTTTTTTCAAACTTATTT L C F F K L I C V F S N L F F V F F Q T Y Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-9_AGS-1_PPS_1 (47428 47284,46934 46905,45615 45610,44722 44709,43411 43409) (frame '2'; 195 bp, 65 residues) 1 VILFLPLHNK TAPSLPVDVA NLLVNHVNLL SCFSRLYIFS YYLKFRTTFF QSSIFIFLCS 61 YPPKN- PGL 10 (- strand): 54301 52652 AGS-1 (54301 54281,54202 54067,53401 53272,52911 52798,52719 52652) SCR (e 1.000 d 0.397 a 0.997,e 1.000 d 1.000 a 0.997,e 1.000 d 0.578 a 0.921,e 1.000 d 0.995 a 0.998,e 1.000) Exon 1 54301 54281 ( 21 n); score: 1.000 Intron 1 54280 54203 ( 78 n); Pd: 0.397 Pa: 0.997 Exon 2 54202 54067 ( 136 n); score: 1.000 Intron 2 54066 53402 ( 665 n); Pd: 1.000 Pa: 0.997 Exon 3 53401 53272 ( 130 n); score: 1.000 Intron 3 53271 52912 ( 360 n); Pd: 0.578 Pa: 0.921 Exon 4 52911 52798 ( 114 n); score: 1.000 Intron 4 52797 52720 ( 78 n); Pd: 0.995 Pa: 0.998 Exon 5 52719 52652 ( 68 n); score: 1.000 PGS (54301 54281,54202 54067,53401 53272,52911 52798,52719 52652) SGN-E208654+ 3-phase translation of AGS-1 (-strand): . . . : . . . 54301 ACATCAAGAATTCTGTATAAG : GTATGGTGTCCTCCTTCCAGAAGACCATGAACGCAAAGA T S R I L Y K : V W C P P S R R P - T Q R H Q E F C I R : Y G V L L P E D H E R K D I K N S V - : G M V S S F Q K T M N A K . . . . . . 54163 TCCCTTAAGCATGTCTGTTACCATTCTGCGGCAATATGACATCCTTCCTGAGATGTACCA S L K H V C Y H S A A I - H P S - D V P P L S M S V T I L R Q Y D I L P E M Y Q I P - A C L L P F C G N M T S F L R C T . . . . : . . 54103 AGTTGGGTTTACAAAGTTATATTTTCGGGCAGGACAG : ATTGCTGTGCTGGAGGATGTGAG S W V Y K V I F S G R T : D C C A G G C E V G F T K L Y F R A G Q : I A V L E D V R K L G L Q S Y I F G Q D R : L L C W R M - . . . . . . 53378 GAAACAAGTTCTGCAAGGCACTCTTGAGGTGCAAAAGTGCTACAGTGGTCCTCATGCTCG E T S S A R H S - G A K V L Q W S S C S K Q V L Q G T L E V Q K C Y S G P H A R G N K F C K A L L R C K S A T V V L M L . . . . . : . 53318 TCGTGACTTCCATGAGCTCAAAGGAGTAGTGATCGTACTTCAATCAT : TTGTTCGTGGTGA S - L P - A Q R S S D R T S I I : C S W - R D F H E L K G V V I V L Q S : F V R G E V V T S M S S K E - - S Y F N H : L F V V . . . . . . 52898 AATTGCTCGAATGCAGTATAAGGATTTTCTGGAGTCTAAACAGAAAAACGCTAATAAAGA N C S N A V - G F S G V - T E K R - - R I A R M Q Y K D F L E S K Q K N A N K E K L L E C S I R I F W S L N R K T L I K . . . . . : . 52838 AAATGATGAGCAGCTGGTGGCTGCTCTGCAGATACAATCAG : CTATTCGTTGCTGGTTGGC K - - A A G G C S A D T I S : Y S L L V G N D E Q L V A A L Q I Q S : A I R C W L A K M M S S W W L L C R Y N Q : L F V A G W . . . . . 52700 TCATAGGCAACTTAATCAACTGCAGAAGTCAAAAAAGTTAAATCAAGAC S - A T - S T A E V K K V K S R H R Q L N Q L Q K S K K L N Q D L I G N L I N C R S Q K S - I K Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-10_AGS-1_PPS_1 (54300 54281,54202 54067,53401 53272,52911 52798,52719 52652) (frame '2'; 468 bp, 156 residues) 1 HQEFCIRYGV LLPEDHERKD PLSMSVTILR QYDILPEMYQ VGFTKLYFRA GQIAVLEDVR 61 KQVLQGTLEV QKCYSGPHAR RDFHELKGVV IVLQSFVRGE IARMQYKDFL ESKQKNANKE 121 NDEQLVAALQ IQSAIRCWLA HRQLNQLQKS KKLNQD AGS-2 (53750 53512) SCR (e 0.797) Exon 1 53750 53512 ( 239 n); score: 0.797 PGS (53750 53512) SGN-E540411- PGS (53747 53515) SGN-E540167+ 3-phase translation of AGS-2 (-strand): . . . . . . 53750 TACCCCTGAACTTATTTTATAAGTAATTTTCTATCCCTTTTCAGCCTACGTGGCACTAGC Y P - T Y F I S N F L S L F S L R G T S T P E L I L - V I F Y P F S A Y V A L A P L N L F Y K - F S I P F Q P T W H - . . . . . . 53690 TTGAAAAAAAAGTCAAGCAGTGTTGGGCCCACAAGATAGTGCCACGTAGGCCAAAAAGGG L K K K S S S V G P T R - C H V G Q K G - K K S Q A V L G P Q D S A T - A K K G L E K K V K Q C W A H K I V P R R P K R . . . . . . 53630 GTAGAAAATTACTTATAAAATAAGTTCAGGTGGGTAATAGGACTTTAATATAGTATAAGT V E N Y L - N K F R W V I G L - Y S I S - K I T Y K I S S G G - - D F N I V - V G R K L L I K - V Q V G N R T L I - Y K . . . . . . 53570 GTGTCTCTGACATTTCAGGCATAGGTTGAGGGGGTACTTGTGCATTATCCCATTTTTCT V S L T F Q A - V E G V L V H Y P I F C L - H F R H R L R G Y L C I I P F F C V S D I S G I G - G G T C A L S H F S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 53512 AGAAAAATGGGATAATGCACAAGTACCCCCTCAACCTATGCCTGAAATGTCAGAGACACA R K M G - C T S T P S T Y A - N V R D T E K W D N A Q V P P Q P M P E M S E T H K N G I M H K Y P L N L C L K C Q R H . . . . . . 53572 CTTATACTATATTAAAGTCCTATTACCCACCTGAACTTATTTTATAAGTAATTTTCTACC L I L Y - S P I T H L N L F Y K - F S T L Y Y I K V L L P T - T Y F I S N F L P T Y T I L K S Y Y P P E L I L - V I F Y . . . . . . 53632 CCTTTTTGGCCTACGTGGCACTATCTTGTGGGCCCAACACTGCTTGACTTTTTTTTCAAG P F W P T W H Y L V G P T L L D F F F K L F G L R G T I L W A Q H C L T F F S S P F L A Y V A L S C G P N T A - L F F Q . . . . . . 53692 CTAGTGCCACGTAGGCTGAAAAGGGATAGAAAATTACTTATAAAATAAGTTCAGGGGTA L V P R R L K R D R K L L I K - V Q G - C H V G - K G I E N Y L - N K F R G A S A T - A E K G - K I T Y K I S S G V Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (- strand): 71274 69654 AGS-1 (71274 71035,70977 70930,69677 69654) SCR (e 0.744 d 0.999 a 0.000,e 0.604 d 0.950 a 0.000,e 0.750) Exon 1 71274 71035 ( 240 n); score: 0.744 Intron 1 71034 70978 ( 57 n); Pd: 0.999 Pa: 0.000 Exon 2 70977 70930 ( 48 n); score: 0.604 Intron 2 70929 69678 (1252 n); Pd: 0.950 Pa: 0.000 Exon 3 69677 69654 ( 24 n); score: 0.750 PGS (71260 71035,70977 70930,69677 69654) SGN-E220828+ PGS (71260 71035,70977 70930,69677 69654) SGN-E220902+ PGS (71239 71035) SGN-E322543+ PGS (71274 71151) SGN-E380042- PGS (71274 71151) SGN-E209785- 3-phase translation of AGS-1 (-strand): . . . . . . 71274 TCTTTAAAAAAAAATTATTTTTTTTATGACAAGGAAAACCCGTAGCCGCTACCCTATGGG S L K K N Y F F Y D K E N P - P L P Y G L - K K I I F F M T R K T R S R Y P M G F K K K L F F L - Q G K P V A A T L W . . . . . . 71214 TGCGCAGAGGGTAAAACCCCCACTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGTA C A E G K T P T P M Q - L A N H I G E V A Q R V K P P L L C N S S Q T T - E R - V R R G - N P H S Y A I A R K P H R R G . . . . . . 71154 ACCCGCACCAGGCCGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCGGCAAGGGGTT T R T R P S S T Q K A N P L L S R Q G V P A P G R A R P R R Q T P C F R G K G F N P H Q A E L D P E G K P L A F A A R G . . . . . . : 71094 TCGAACTTGAGACCTCCAATAAGGAAGTCCCAAGCTCAAATCACTGGTCCACCTTGAAGG : S N L R P P I R K S Q A Q I T G P P - R : R T - D L Q - G S P K L K S L V H L E G : F E L E T S N K E V P S S N H W S T L K : . . . . . : . 70977 ATTTTTAAGAGTTTAATGATAAAAAAAAACATATCTAAACTATCTCTT : ATAATTATGTAA I F K S L M I K K N I S K L S L : I I M - F L R V - - - K K T Y L N Y L L : - L C N D F - E F N D K K K H I - T I S : Y N Y V . . 69665 TTACTTTGATTA L L - L Y F D I T L I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 12 (+ strand): 73036 76953 AGS-1 (73036 73104,74051 74150,74484 74658,74966 75045,76809 76953) SCR (e 1.000 d 0.990 a 0.741,e 1.000 d 1.000 a 0.982,e 1.000 d 0.957 a 0.954,e 1.000 d 0.991 a 0.918,e 1.000) Exon 1 73036 73104 ( 69 n); score: 1.000 Intron 1 73105 74050 ( 946 n); Pd: 0.990 Pa: 0.741 Exon 2 74051 74150 ( 100 n); score: 1.000 Intron 2 74151 74483 ( 333 n); Pd: 1.000 Pa: 0.982 Exon 3 74484 74658 ( 175 n); score: 1.000 Intron 3 74659 74965 ( 307 n); Pd: 0.957 Pa: 0.954 Exon 4 74966 75045 ( 80 n); score: 1.000 Intron 4 75046 76808 (1763 n); Pd: 0.991 Pa: 0.918 Exon 5 76809 76953 ( 145 n); score: 1.000 PGS (73036 73104,74051 74150,74484 74658,74966 75045,76809 76953) SGN-E336504+ 3-phase translation of AGS-1 (+strand): . . . . . . 73036 ACAAACCATGATAGAATCTCAGTACAGGCCTCGTGTCACAGAGTCAAAATTGCAGAAGAT T N H D R I S V Q A S C H R V K I A E D Q T M I E S Q Y R P R V T E S K L Q K I K P - - N L S T G L V S Q S Q N C R R . : . . . . . 73096 CTCCATAAA : CTGTGGGCATGGTGTCACCCCTTTGTTTCAAAAATCGTTGACTGCCACTGA L H K : L W A W C H P F V S K I V D C H - S I N : C G H G V T P L F Q K S L T A T D S P - : T V G M V S P L C F K N R - L P L . . . . . : . 74102 TGCTGATCTCACATTATCACGTCTTGTGATTCCCAAAAAGTGTGCTGAG : GCTTACTTTCC C - S H I I T S C D S Q K V C - : G L L S A D L T L S R L V I P K K C A E : A Y F P M L I S H Y H V L - F P K S V L R : L T F . . . . . . 74495 TCCACTTTCTGGGCCACACAAGATCCCCATTAATATACTGGATACCGACGGCAAGGAATG S T F W A T Q D P H - Y T G Y R R Q G M P L S G P H K I P I N I L D T D G K E W L H F L G H T R S P L I Y W I P T A R N . . . . . . 74555 GAATTTTCACTTCCGGTTTTGGCCTAATTCAAGGAGTAAAATGTATGTGCTGGAAGGACT E F S L P V L A - F K E - N V C A G R T N F H F R F W P N S R S K M Y V L E G L G I F T S G F G L I Q G V K C M C W K D . . . . . : . 74615 TAGAGATTACATGGTCTCGAAGAAGTGGCAAGCAGGTGATGTAG : TTACTTTTTATCGAAT - R L H G L E E V A S R - C S : Y F L S N R D Y M V S K K W Q A G D V : V T F Y R I L E I T W S R R S G K Q V M - : L L F I E . . . . . . 74982 TGAACCAGGACAGAAACTGGTCATGGGATTAAGGAATACTTCGCCTGGTTCTTCCACCTC - T R T E T G H G I K E Y F A W F F H L E P G Q K L V M G L R N T S P G S S T S L N Q D R N W S W D - G I L R L V L P P . : . . . . . 75042 ATAG : ATCTCAGCTCGATGCCGGAGGCGGATCTACATGTAACTTATGAGGTTCACAGGAAC I : D L S S M P E A D L H V T Y E V H R N - : I S A R C R R R I Y M - L M R F T G T H R : S Q L D A G G G S T C N L - G S Q E . . . . . . 76865 TATACTCAGATCTTGTACGTGTATTATGGAATTGATGGAATATCTATAGATACTTTGATT Y T Q I L Y V Y Y G I D G I S I D T L I I L R S C T C I M E L M E Y L - I L - L L Y S D L V R V L W N - W N I Y R Y F D . . . 76925 GTAAACCCAATCATTATTTTGTATCAACT V N P I I I L Y Q - T Q S L F C I N C K P N H Y F V S T Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1+_PGL-12_AGS-1_PPS_1 (73037 73104,74051 74150,74484 74658,74966 75045) (frame '2'; 420 bp, 140 residues) 1 QTMIESQYRP RVTESKLQKI SINCGHGVTP LFQKSLTATD ADLTLSRLVI PKKCAEAYFP 61 PLSGPHKIPI NILDTDGKEW NFHFRFWPNS RSKMYVLEGL RDYMVSKKWQ AGDVVTFYRI 121 EPGQKLVMGL RNTSPGSSTS - PGL 13 (- strand): 81426 78821 AGS-1 (81426 81263,80053 79866,79667 79431,79346 79297,78899 78821) SCR (e 1.000 d 0.889 a 0.966,e 1.000 d 0.999 a 0.882,e 1.000 d 0.996 a 1.000,e 1.000 d 0.982 a 0.974,e 1.000) Exon 1 81426 81263 ( 164 n); score: 1.000 Intron 1 81262 80054 (1209 n); Pd: 0.889 Pa: 0.966 Exon 2 80053 79866 ( 188 n); score: 1.000 Intron 2 79865 79668 ( 198 n); Pd: 0.999 Pa: 0.882 Exon 3 79667 79431 ( 237 n); score: 1.000 Intron 3 79430 79347 ( 84 n); Pd: 0.996 Pa: 1.000 Exon 4 79346 79297 ( 50 n); score: 1.000 Intron 4 79296 78900 ( 397 n); Pd: 0.982 Pa: 0.974 Exon 5 78899 78821 ( 79 n); score: 1.000 PGS (81425 81263,80053 79866,79667 79431,79346 79297,78899 78821) SGN-E262130+ PGS (81426 81263,80053 79866,79667 79434) SGN-E551144+ 3-phase translation of AGS-1 (-strand): . . . . . . 81426 TGCAGTCACTGAATCTGCAAAGCAGGTCACAGCAATTGCTGATCCTCCTAAAGTTGAGAC C S H - I C K A G H S N C - S S - S - D A V T E S A K Q V T A I A D P P K V E T Q S L N L Q S R S Q Q L L I L L K L R . . . . . . 81366 TGCTACTGATCTTTTCGACATGCTTTCTATGGATTCTCCAAGTGACAATTGTGCAAGTGC C Y - S F R H A F Y G F S K - Q L C K C A T D L F D M L S M D S P S D N C A S A L L L I F S T C F L W I L Q V T I V Q V . . . . . : . 81306 TGCTCCTGTAGAGGATAACACATGGACAGCTTTTCAATGTATTC : CTTCTCAAGAAGAAGT C S C R G - H M D S F S M Y S : F S R R S A P V E D N T W T A F Q C I : P S Q E E V L L L - R I T H G Q L F N V F : L L K K K . . . . . . 80037 AGAAGCAAAAAGCGGTGTTGCAAAATCTGATCATCGGAAATGCCAATCCGCTTCTGCAAT R S K K R C C K I - S S E M P I R F C N E A K S G V A K S D H R K C Q S A S A I - K Q K A V L Q N L I I G N A N P L L Q . . . . . . 79977 TGATGATTTATTCAAGGATTCATCAACACTGTCATCATCAGTTTCAACTTCTTCCTTGTC - - F I Q G F I N T V I I S F N F F L V D D L F K D S S T L S S S V S T S S L S L M I Y S R I H Q H C H H Q F Q L L P C . . . . . . : 79917 AGAGAAGCTTCCGAAAGATGTCAAAAATGATATCATGAACCTTTTCGACAAG : TCCAATAT R E A S E R C Q K - Y H E P F R Q : V Q Y E K L P K D V K N D I M N L F D K : S N M Q R S F R K M S K M I S - T F S T S : P I . . . . . . 79659 GGTGTCACCATTTGCTATGCATCAGCAACAACTTGCCCAGCTAGCTCAACAACAATCTCT G V T I C Y A S A T T C P A S S T T I S V S P F A M H Q Q Q L A Q L A Q Q Q S L W C H H L L C I S N N L P S - L N N N L . . . . . . 79599 TCTTATGGCTGCTGCCGCTGCTAGTGGCAATTTGAAAATCCCTGGGGATGTTCAACAAAG S Y G C C R C - W Q F E N P W G C S T K L M A A A A A S G N L K I P G D V Q Q S F L W L L P L L V A I - K S L G M F N K . . . . . . 79539 CCCAAATGGCTCCAACATAGTAAACCAAAGTTGGCCACATGCAGGCTACCAGTTCCCTGG P K W L Q H S K P K L A T C R L P V P W P N G S N I V N Q S W P H A G Y Q F P G A Q M A P T - - T K V G H M Q A T S S L . . . . . : . 79479 AATGATGATGCCAGCCAGTGGAAAGACTGAACTGGAGAAATATTTTCAG : GCGGGAGCAGC N D D A S Q W K D - T G E I F S : G G S S M M M P A S G K T E L E K Y F Q : A G A A E - - C Q P V E R L N W R N I F R : R E Q . . . . : . . 79335 ACATTCAGCTGGAAACTTTGTGCCAGTATCGACATCCAG : TGTTTATCAAATGGGACAGAA T F S W K L C A S I D I Q : C L S N G T E H S A G N F V P V S T S S : V Y Q M G Q N H I Q L E T L C Q Y R H P : V F I K W D R . . . . . . 78878 TTATTCCGGCAATGGTACAGTTCCTTCTATGCCGAGTGGAGATGCTGCTACCACACTT L F R Q W Y S S F Y A E W R C C Y H T Y S G N G T V P S M P S G D A A T T L I I P A M V Q F L L C R V E M L L P H Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-13_AGS-1_PPS_1 (81425 81263,80053 79866,79667 79431,79346 79297,78899 78821) (frame '2'; 717 bp, 239 residues) 1 AVTESAKQVT AIADPPKVET ATDLFDMLSM DSPSDNCASA APVEDNTWTA FQCIPSQEEV 61 EAKSGVAKSD HRKCQSASAI DDLFKDSSTL SSSVSTSSLS EKLPKDVKND IMNLFDKSNM 121 VSPFAMHQQQ LAQLAQQQSL LMAAAAASGN LKIPGDVQQS PNGSNIVNQS WPHAGYQFPG 181 MMMPASGKTE LEKYFQAGAA HSAGNFVPVS TSSVYQMGQN YSGNGTVPSM PSGDAATTL PGL 14 (+ strand): 82705 86492 AGS-1 (82705 82771,83461 83466,84850 84860,84992 85087,85151 85203,85764 86075,86378 86468) SCR (e 0.746 d 0.000 a 0.000,e 0.833 d 0.809 a 0.620,e 0.500 d 0.923 a 0.000,e 0.661 d 0.000 a 0.830,e 0.594 d 0.000 a 0.000,e 0.841 d 0.000 a 0.330,e 0.808) Exon 1 82705 82771 ( 67 n); score: 0.746 Intron 1 82772 83460 ( 689 n); Pd: 0.000 Pa: 0.000 Exon 2 83461 83466 ( 6 n); score: 0.833 Intron 2 83467 84849 (1383 n); Pd: 0.809 Pa: 0.620 Exon 3 84850 84860 ( 11 n); score: 0.500 Intron 3 84861 84991 ( 131 n); Pd: 0.923 Pa: 0.000 Exon 4 84992 85087 ( 96 n); score: 0.661 Intron 4 85088 85150 ( 63 n); Pd: 0.000 Pa: 0.830 Exon 5 85151 85203 ( 53 n); score: 0.594 Intron 5 85204 85763 ( 560 n); Pd: 0.000 Pa: 0.000 Exon 6 85764 86075 ( 312 n); score: 0.841 Intron 6 86076 86377 ( 302 n); Pd: 0.000 Pa: 0.330 Exon 7 86378 86468 ( 91 n); score: 0.808 PGS (82705 82771,83461 83466,84850 84860,84992 85087,85151 85203,85764 86075,86378 86468) SGN-E213530+ 3-phase translation of AGS-1 (+strand): . . . . . . 82705 AAGCACTCCCAAGGGTGTGGTCTGGTCGTTAATAGAGTGGATTGAGAGCCAAGAGGTCTC K H S Q G C G L V V N R V D - E P R G L S T P K G V V W S L I E W I E S Q E V S A L P R V W S G R - - S G L R A K R S . : . : . : . . . 82765 ACGTTAA : ATTCAC : GTTAAAGAGAA : AAAATAAGACTCGGTGATTTCTTTTCATCTGTCCTA T L : N S : R - R E : K I R L G D F F S S V L R - : I H : V K E K : K - D S V I S F H L S - H V K : F T : L K R : K N K T R - F L F I C P . . . . . . : 85028 GCTTGGTGTATAGAGCTACCTATTGTTGCTGCTTGCTGCGAGGTGACAGATATCCCGTGG : A W C I E L P I V A A C C E V T D I P W : L G V - S Y L L L L L A A R - Q I S R G : S L V Y R A T Y C C C L L R G D R Y P V : . . . . . . : 85151 ATTAATCACCTGTTTTGAAGCAGATCATACCTTCAATAATCAAAATATCATAA : AGGGAAA I N H L F - S R S Y L Q - S K Y H K : G K L I T C F E A D H T F N N Q N I I : K G N D - S P V L K Q I I P S I I K I S - : R E . . . . . . 85771 CTTACATAAATATACTAAAATAAAAAAATATTTACCATTTATAGCAATAATATCTTTTTT L T - I Y - N K K I F T I Y S N N I F F L H K Y T K I K K Y L P F I A I I S F F T Y I N I L K - K N I Y H L - Q - Y L F . . . . . . 85831 TCACTTGATCACTTTTAATTCATTTTTAATACAAGTTTAATACATATTACAAATAACAAT S L D H F - F I F N T S L I H I T N N N H L I T F N S F L I Q V - Y I L Q I T I F T - S L L I H F - Y K F N T Y Y K - Q . . . . . . 85891 TTATTATTCATATATAATACAAATTTTAATAATGGATAATACATTTATCGCACATTTTAA L L F I Y N T N F N N G - Y I Y R T F - Y Y S Y I I Q I L I M D N T F I A H F N F I I H I - Y K F - - W I I H L S H I L . . . . . . 85951 TACACTTATAATACAATATGTCAAATTTTTACCAAACAAACATAATATATTTCAAAAAAC Y T Y N T I C Q I F T K Q T - Y I S K N T L I I Q Y V K F L P N K H N I F Q K T I H L - Y N M S N F Y Q T N I I Y F K K . . . . . . 86011 AATTATAATTCATATATATTGCATACATAATTCACTTTTAATTCATATTGTAGATTTAAC N Y N S Y I L H T - F T F N S Y C R F N I I I H I Y C I H N S L L I H I V D L T Q L - F I Y I A Y I I H F - F I L - I - . : . . . . . 86071 ATAGC : ATTTGTCATAATATTACTATAAATGGTAATAAACAAAAAATATCGCTAAAATCAG I A : F V I I L L - M V I N K K Y R - N Q - : H L S - Y Y Y K W - - T K N I A K I S H S : I C H N I T I N G N K Q K I S L K S . . . . 86433 TAATTATTTTTTAAAATGTATTAATTTATGTAATTT - L F F K M Y - F M - F N Y F L K C I N L C N V I I F - N V L I Y V I Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1+_PGL-14_AGS-1_PPS_1 (85871 86074) (frame '2'; 201 bp, 67 residues) 1 YILQITIYYS YIIQILIMDN TFIAHFNTLI IQYVKFLPNK HNIFQKTIII HIYCIHNSLL 61 IHIVDLT- AGS-2 (85801 86056,86378 86492) SCR (e 0.844 d 0.000 a 0.330,e 0.796) Exon 1 85801 86056 ( 256 n); score: 0.844 Intron 1 86057 86377 ( 321 n); Pd: 0.000 Pa: 0.330 Exon 2 86378 86492 ( 115 n); score: 0.796 PGS (85801 86056,86378 86492) SGN-E395471+ 3-phase translation of AGS-2 (+strand): . . . . . . 85801 TTTACCATTTATAGCAATAATATCTTTTTTTCACTTGATCACTTTTAATTCATTTTTAAT F T I Y S N N I F F S L D H F - F I F N L P F I A I I S F F H L I T F N S F L I Y H L - Q - Y L F F T - S L L I H F - . . . . . . 85861 ACAAGTTTAATACATATTACAAATAACAATTTATTATTCATATATAATACAAATTTTAAT T S L I H I T N N N L L F I Y N T N F N Q V - Y I L Q I T I Y Y S Y I I Q I L I Y K F N T Y Y K - Q F I I H I - Y K F - . . . . . . 85921 AATGGATAATACATTTATCGCACATTTTAATACACTTATAATACAATATGTCAAATTTTT N G - Y I Y R T F - Y T Y N T I C Q I F M D N T F I A H F N T L I I Q Y V K F L - W I I H L S H I L I H L - Y N M S N F . . . . . . 85981 ACCAAACAAACATAATATATTTCAAAAAACAATTATAATTCATATATATTGCATACATAA T K Q T - Y I S K N N Y N S Y I L H T - P N K H N I F Q K T I I I H I Y C I H N Y Q T N I I Y F K K Q L - F I Y I A Y I . . : . . . . 86041 TTCACTTTTAATTCAT : ATTTGTCATAATATTACTATAAATGGTAATAAACAAAAAATATC F T F N S : Y L S - Y Y Y K W - - T K N I S L L I H : I C H N I T I N G N K Q K I S I H F - F I : F V I I L L - M V I N K K Y . . . . . . 86422 GCTAAAATCAGTAATTATTTTTTAAAATGTATTAATTTATGTAATTTTTCTTGTCTTTTT A K I S N Y F L K C I N L C N F S C L F L K S V I I F - N V L I Y V I F L V F F R - N Q - L F F K M Y - F M - F F L S F . . 86482 TAGTAGTAACA - - - S S N L V V T Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1+_PGL-14_AGS-2_PPS_1 (85871 86056,86378 86446) (frame '2'; 252 bp, 84 residues) 1 YILQITIYYS YIIQILIMDN TFIAHFNTLI IQYVKFLPNK HNIFQKTIII HIYCIHNSLL 61 IHICHNITIN GNKQKISLKS VIIF- PGL 15 (- strand): 90206 90043 AGS-1 (90206 90043) SCR (e 0.750) Exon 1 90206 90043 ( 164 n); score: 0.750 PGS (90206 90043) SGN-E542725- PGS (90206 90043) SGN-E301580- PGS (90206 90067) SGN-E542724+ 3-phase translation of AGS-1 (-strand): . . . . . . 90206 TTTCAATAAGAGGTTCAAAATTAATAGAATTAGACACATGGAGTAGCCGAAGGGGGTTCG F Q - E V Q N - - N - T H G V A E G G S F N K R F K I N R I R H M E - P K G V R S I R G S K L I E L D T W S S R R G F . . . . . . 90146 ACATCTATCTTATATAGAAAAAATATTATTTTAACCATGTATAATTAATTTTCCATAGAA T S I L Y R K N I I L T M Y N - F S I E H L S Y I E K I L F - P C I I N F P - K D I Y L I - K K Y Y F N H V - L I F H R . . . . . 90086 GGGGGTTCGGATGAACCCCTGTAACCAAAGGTGGCTCCGCCCCT G G S D E P L - P K V A P P G V R M N P C N Q R W L R P R G F G - T P V T K G G S A P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 90043 AGGGGCGGAGCCACCTTTGGTTACAGGGGTTCATCCGAACCCCCTTCTATGGAAAATTAA R G G A T F G Y R G S S E P P S M E N - G A E P P L V T G V H P N P L L W K I N G R S H L W L Q G F I R T P F Y G K L . . . . . . 90103 TTATACATGGTTAAAATAATATTTTTTCTATATAAGATAGATGTCGAACCCCCTTCGGCT L Y M V K I I F F L Y K I D V E P P S A Y T W L K - Y F F Y I R - M S N P L R L I I H G - N N I F S I - D R C R T P F G . . . . . 90163 ACTCCATGTGTCTAATTCTATTAATTTTGAACCTCTTATTGAAA T P C V - F Y - F - T S Y - L H V S N S I N F E P L I E Y S M C L I L L I L N L L L K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 16 (+ strand): 90822 91146 AGS-1 (90822 91146) SCR (e 0.997) Exon 1 90822 91146 ( 325 n); score: 0.997 PGS (90822 91146) SGN-E229471- 3-phase translation of AGS-1 (+strand): . . . . . . 90822 TATGTATCGGGCAATGTTTTCATTGTCGATAGTGGAGCTACCTTAATAGGCGTGCCAATA Y V S G N V F I V D S G A T L I G V P I M Y R A M F S L S I V E L P - - A C Q Y C I G Q C F H C R - W S Y L N R R A N . . . . . . 90882 TTCTCGTCACTCTAAAAGGATAGAGGTACAAACAAATTGAAACGAAGGGAGTAACAAATA F S S L - K D R G T N K L K R R E - Q I S R H S K R I E V Q T N - N E G S N K - I L V T L K G - R Y K Q I E T K G V T N . . . . . . 90942 GAAGAGAAAGGCAACATATGCTTAATATTTATTATCTGTGAATGGATACAATTATAGTGC E E K G N I C L I F I I C E W I Q L - C K R K A T Y A - Y L L S V N G Y N Y S A R R E R Q H M L N I Y Y L - M D T I I V . . . . . . 91002 TTTTACAAATACATATTCATATGACTATCTATCAGATGCAATGTATCACCTAACAATGGA F Y K Y I F I - L S I R C N V S P N N G F T N T Y S Y D Y L S D A M Y H L T M E L L Q I H I H M T I Y Q M Q C I T - Q W . . . . . . 91062 AACAATACTACAACTTGCAGTATTTGAACGATGATTTTCATCGTATATGCTAGGTACATC N N T T T C S I - T M I F I V Y A R Y I T I L Q L A V F E R - F S S Y M L G T S K Q Y Y N L Q Y L N D D F H R I C - V H . . . 91122 AATGAAAAACAATACACACTCGAAA N E K Q Y T L E M K N N T H S K Q - K T I H T R Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 91146 TTTCGAGTGTGTATTGTTTTTCATTGATGTACCTAGCATATACGATGAAAATCATCGTTC F R V C I V F H - C T - H I R - K S S F F E C V L F F I D V P S I Y D E N H R S S S V Y C F S L M Y L A Y T M K I I V . . . . . . 91086 AAATACTGCAAGTTGTAGTATTGTTTCCATTGTTAGGTGATACATTGCATCTGATAGATA K Y C K L - Y C F H C - V I H C I - - I N T A S C S I V S I V R - Y I A S D R - Q I L Q V V V L F P L L G D T L H L I D . . . . . . 91026 GTCATATGAATATGTATTTGTAAAAGCACTATAATTGTATCCATTCACAGATAATAAATA V I - I C I C K S T I I V S I H R - - I S Y E Y V F V K A L - L Y P F T D N K Y S H M N M Y L - K H Y N C I H S Q I I N . . . . . . 90966 TTAAGCATATGTTGCCTTTCTCTTCTATTTGTTACTCCCTTCGTTTCAATTTGTTTGTAC L S I C C L S L L F V T P F V S I C L Y - A Y V A F L F Y L L L P S F Q F V C T I K H M L P F S S I C Y S L R F N L F V . . . . . . 90906 CTCTATCCTTTTAGAGTGACGAGAATATTGGCACGCCTATTAAGGTAGCTCCACTATCGA L Y P F R V T R I L A R L L R - L H Y R S I L L E - R E Y W H A Y - G S S T I D P L S F - S D E N I G T P I K V A P L S . . . 90846 CAATGAAAACATTGCCCGATACATA Q - K H C P I H N E N I A R Y I T M K T L P D T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 17 (- strand): 92129 91723 AGS-1 (92129 91723) SCR (e 0.885) Exon 1 92129 91723 ( 407 n); score: 0.885 PGS (92129 91723) SGN-E274173+ 3-phase translation of AGS-1 (-strand): . . . . . . 92129 CTAGCTGAATTTCAAACTGAGATTGAAATGTTGTCCAAACTTCGCCACCGTCACCTCGTG L A E F Q T E I E M L S K L R H R H L V - L N F K L R L K C C P N F A T V T S C S - I S N - D - N V V Q T S P P S P R . . . . . . 92069 TCTTTGATTGGTTATTGTGATGAGAGGTCTGAAATGATTCTTGTATATGAATACATGGCA S L I G Y C D E R S E M I L V Y E Y M A L - L V I V M R G L K - F L Y M N T W Q V F D W L L - - E V - N D S C I - I H G . . . . . . 92009 AATGGTCCTCTCAGAAGTCATCTTTATGGAACAGATCTCCCACCTCTCTCGTGGAAGCAG N G P L R S H L Y G T D L P P L S W K Q M V L S E V I F M E Q I S H L S R G S S K W S S Q K S S L W N R S P T S L V E A . . . . . . 91949 CGTCTTGAGATTTGTATCGGTGCTGCAAGAGGGCTGCATTACCTCCACACAGGTGCAGCT R L E I C I G A A R G L H Y L H T G A A V L R F V S V L Q E G C I T S T Q V Q L A S - D L Y R C C K R A A L P P H R C S . . . . . . 91889 CAGAGCATCATTCACCGCGATGTCAAAACCACCAACATACTTTTGGATGATAACTTTTTG Q S I I H R D V K T T N I L L D D N F L R A S F T A M S K P P T Y F W M I T F W S E H H S P R C Q N H Q H T F G - - L F . . . . . . 91829 GCTAAAGTTGCTGACTTTGGTCTTTCTAAAGCCGGACCAGCTCTAGATCAGACGCATGTC A K V A D F G L S K A G P A L D Q T H V L K L L T L V F L K P D Q L - I R R M S G - S C - L W S F - S R T S S R S D A C . . . . . 91769 AGTACTGCCGTTAAGGGTAGCTTTGGGTACCTTGATCCTGAATACTT S T A V K G S F G Y L D P E Y V L P L R V A L G T L I L N T Q Y C R - G - L W V P - S - I L Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-17_AGS-1_PPS_1 (92129 91725) (frame '1'; 405 bp, 135 residues) 1 LAEFQTEIEM LSKLRHRHLV SLIGYCDERS EMILVYEYMA NGPLRSHLYG TDLPPLSWKQ 61 RLEICIGAAR GLHYLHTGAA QSIIHRDVKT TNILLDDNFL AKVADFGLSK AGPALDQTHV 121 STAVKGSFGY LDPEY 3-phase translation of AGS-1 (+strand): . . . . . . 91723 AAGTATTCAGGATCAAGGTACCCAAAGCTACCCTTAACGGCAGTACTGACATGCGTCTGA K Y S G S R Y P K L P L T A V L T C V - S I Q D Q G T Q S Y P - R Q Y - H A S D V F R I K V P K A T L N G S T D M R L . . . . . . 91783 TCTAGAGCTGGTCCGGCTTTAGAAAGACCAAAGTCAGCAACTTTAGCCAAAAAGTTATCA S R A G P A L E R P K S A T L A K K L S L E L V R L - K D Q S Q Q L - P K S Y H I - S W S G F R K T K V S N F S Q K V I . . . . . . 91843 TCCAAAAGTATGTTGGTGGTTTTGACATCGCGGTGAATGATGCTCTGAGCTGCACCTGTG S K S M L V V L T S R - M M L - A A P V P K V C W W F - H R G E - C S E L H L C I Q K Y V G G F D I A V N D A L S C T C . . . . . . 91903 TGGAGGTAATGCAGCCCTCTTGCAGCACCGATACAAATCTCAAGACGCTGCTTCCACGAG W R - C S P L A A P I Q I S R R C F H E G G N A A L L Q H R Y K S Q D A A S T R V E V M Q P S C S T D T N L K T L L P R . . . . . . 91963 AGAGGTGGGAGATCTGTTCCATAAAGATGACTTCTGAGAGGACCATTTGCCATGTATTCA R G G R S V P - R - L L R G P F A M Y S E V G D L F H K D D F - E D H L P C I H E R W E I C S I K M T S E R T I C H V F . . . . . . 92023 TATACAAGAATCATTTCAGACCTCTCATCACAATAACCAATCAAAGACACGAGGTGACGG Y T R I I S D L S S Q - P I K D T R - R I Q E S F Q T S H H N N Q S K T R G D G I Y K N H F R P L I T I T N Q R H E V T . . . . . 92083 TGGCGAAGTTTGGACAACATTTCAATCTCAGTTTGAAATTCAGCTAG W R S L D N I S I S V - N S A G E V W T T F Q S Q F E I Q L V A K F G Q H F N L S L K F S - Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1+_PGL-17_AGS-1_PPS_1 (91788 92129) (frame '0'; 339 bp, 113 residues) 1 SWSGFRKTKV SNFSQKVIIQ KYVGGFDIAV NDALSCTCVE VMQPSCSTDT NLKTLLPRER 61 WEICSIKMTS ERTICHVFIY KNHFRPLITI TNQRHEVTVA KFGQHFNLSL KFS- PGL 18 (- strand): 105009 96134 AGS-1 (100735 100681,99453 99421,96557 96534,96499 96134) SCR (e 0.709 d 0.000 a 0.000,e 0.667 d 0.900 a 0.000,e 0.875 d 0.000 a 0.000,e 0.908) Exon 1 100735 100681 ( 55 n); score: 0.709 Intron 1 100680 99454 (1227 n); Pd: 0.000 Pa: 0.000 Exon 2 99453 99421 ( 33 n); score: 0.667 Intron 2 99420 96558 (2863 n); Pd: 0.900 Pa: 0.000 Exon 3 96557 96534 ( 24 n); score: 0.875 Intron 3 96533 96500 ( 34 n); Pd: 0.000 Pa: 0.000 Exon 4 96499 96134 ( 366 n); score: 0.908 PGS (96279 96134) SGN-E376754+ PGS (96254 96150) SGN-E577960- PGS (96487 96157) SGN-E253695- PGS (96428 96157) SGN-E249253- PGS (96406 96157) SGN-E242674+ PGS (96406 96157) SGN-E233074+ PGS (96406 96157) SGN-E233735+ PGS (96406 96157) SGN-E377238+ PGS (96406 96157) SGN-E240879+ PGS (96405 96157) SGN-E237992+ PGS (96242 96157) SGN-E240526- PGS (96207 96157) SGN-E256217+ PGS (96406 96158) SGN-E233594+ PGS (96262 96192) SGN-E377316+ PGS (96255 96192) SGN-E217478+ PGS (96255 96192) SGN-E228654+ PGS (96255 96192) SGN-E229134+ PGS (100735 100681,99453 99421,96557 96534,96499 96230) SGN-E204223+ PGS (100735 100681,99453 99421,96557 96534,96499 96255) SGN-E374844+ 3-phase translation of AGS-1 (-strand): . . . . . . : 100735 CTTATTTAATGATTTTAAATTTTTAAACTATTTAAATATTTATAAAATTATATTT : ATTTT L I - - F - I F K L F K Y L - N Y I : Y F L F N D F K F L N Y L N I Y K I I F : I L Y L M I L N F - T I - I F I K L Y L : F . . . : . . . : 99448 GATAATCAAATTTATTTATGTTTCACTA : TAAGGGTCCGTTTGGATGGGCTTA : GCTGAAAC D N Q I Y L C F T : I R V R L D G L : S - N I I K F I Y V S L : - G S V W M G L : A E T - - S N L F M F H Y : K G P F G W A - : L K . . . . . . 96491 TTATTTTTAAAAAAAGCAATTATGCGTTTGGATAAAAGTGCTGAAGTTGTTATGTCAAAT L F L K K A I M R L D K S A E V V M S N Y F - K K Q L C V W I K V L K L L C Q M L I F K K S N Y A F G - K C - S C Y V K . . . . . . 96431 GTGAAAAAGAAAAATAGAAGAAAGAGATGTTAGGGTTATATGGGTAATTTGGAGATTGTA V K K K N R R K R C - G Y M G N L E I V - K R K I E E R D V R V I W V I W R L Y C E K E K - K K E M L G L Y G - F G D C . . . . . . 96371 TAAAAATATTAAGGGAAAAAACATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAA - K Y - G K K H K N V V N L K Q L I S - K N I K G K N I K M W S T - N S L - A K I K I L R E K T - K C G Q L K T A Y K L . . . . . . 96311 AAAAAAAAAGCACCCCTACCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTAAC K K K A P L P Q L L T F G L K - V F F N K K K H P Y P S F - L L A - N K F F L T K K K S T P T P A F N F W L K I S F F - . . . . . . 96251 TTAAAATAAGCTATTTTGAGTATTGCCAAACAGTTAAATAAGTCAAAAACCAGCTTTTAA L K - A I L S I A K Q L N K S K T S F - - N K L F - V L P N S - I S Q K P A F K L K I S Y F E Y C Q T V K - V K N Q L L . . . . . . 96191 GTCAGTTTAACCAGCTTTTAAGCTGAGCCAAACAGGCTCTAACTAATTAAAAACAATA V S L T S F - A E P N R L - L I K N N S V - P A F K L S Q T G S N - L K T I S Q F N Q L L S - A K Q A L T N - K Q Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (99493 99126,99077 99051,99013 98956,96337 96303) SCR (e 0.890 d 0.000 a 0.943,e 0.704 d 0.006 a 0.000,e 0.724 d 0.000 a 0.000,e 0.714) Exon 1 99493 99126 ( 368 n); score: 0.890 Intron 1 99125 99078 ( 48 n); Pd: 0.000 Pa: 0.943 Exon 2 99077 99051 ( 27 n); score: 0.704 Intron 2 99050 99014 ( 37 n); Pd: 0.006 Pa: 0.000 Exon 3 99013 98956 ( 58 n); score: 0.724 Intron 3 98955 96338 (2618 n); Pd: 0.000 Pa: 0.000 Exon 4 96337 96303 ( 35 n); score: 0.714 PGS (99493 99126,99077 99051,99013 98956,96337 96303) SGN-E542827+ 3-phase translation of AGS-2 (-strand): . . . . . . 99493 TTTTGACTTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTAT F - L F L F Q - L I Y N Y Y F D N Q I Y F D F F C F N D - F I I I I L I I K F I L T F F V S M T N L - L L F - - S N L . . . . . . 99433 TTATGTTTCACTAATATTCTTGTAAAACTTATTGTAGATGACCAAATTTTTTCTTCCAAT L C F T N I L V K L I V D D Q I F S S N Y V S L I F L - N L L - M T K F F L P I F M F H - Y S C K T Y C R - P N F F F Q . . . . . . 99373 ACGAAATTAAATTACAATATACACAAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAA T K L N Y N I H K K N S L I F Y S L N - R N - I T I Y T K K I V - F F I L - T K Y E I K L Q Y T Q K K - F N F L F F K L . . . . . . 99313 GGAATGAAAGAAAACAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGT G M K E N N K I R I R N S N N Y N K R S E - K K T T K - E - E I Q I I I I K E V R N E R K Q Q N K N K K F K - L - - K K . . . . . . 99253 CAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTAAGCTTTGATAGAAGAATA Q K I I Y V - K K L K Y T L S F D R R I K K - F M Y E K N - N I P - A L I E E - S K N N L C M K K I K I Y L K L - - K N . . . . . . 99193 ATATATACCCCTAAATAATTTTTTTTTAAAAATTAGAAGTAATAAATATAAATTTAAAAC I Y T P K - F F F K N - K - - I - I - N Y I P L N N F F L K I R S N K Y K F K T N I Y P - I I F F - K L E V I N I N L K . : . . . : . . 99133 TAATTTTT : GGGTATATGTGAGCCGTTTGTATAACG : ATATCAGCTCCAAATGTCAAAGTTG - F L : G I C E P F V - R : Y Q L Q M S K L N F : W V Y V S R L Y N : D I S S K C Q S - L I F : G Y M - A V C I T : I S A P N V K V . . . . : . . 98988 AGGGGTATATCAGACCCTTTTCCCTAAAATTTA : TCAACTTAAAACAGCTTATAAGCTAAA R G I S D P F P - N L : S T - N S L - A K G V Y Q T L F P K I Y : Q L K T A Y K L K E G Y I R P F S L K F : I N L K Q L I S - . 96310 AAAAAAAA K K K K K K K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (98125 98094,97265 97235,96559 96304) SCR (e 0.812 d 0.000 a 0.000,e 0.677 d 0.000 a 0.000,e 0.912) Exon 1 98125 98094 ( 32 n); score: 0.812 Intron 1 98093 97266 ( 828 n); Pd: 0.000 Pa: 0.000 Exon 2 97265 97235 ( 31 n); score: 0.677 Intron 2 97234 96560 ( 675 n); Pd: 0.000 Pa: 0.000 Exon 3 96559 96304 ( 256 n); score: 0.912 PGS (98125 98094,97265 97235,96559 96304) SGN-E578392+ PGS (96550 96473) SGN-E391901- 3-phase translation of AGS-3 (-strand): . . . . : . . 98125 AAATTAAAAAATAATATAGTATCTTAATTTAT : TTGAGGATATTTTAGTCTGAAATATGTT K L K N N I V S - F I : - G Y F S L K Y V N - K I I - Y L N L : F E D I L V - N M F I K K - Y S I L I Y : L R I F - S E I C . : . . . . . 97237 CAT : ACTAAGGGTCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTACTTTTGAA H : T K G P F G W A - - K Q L - K S T F E I : L R V R L D G L N K S S F K K V L L K S : Y - G S V W M G L I K A A L K K Y F - . . . . . . 96502 AGTGCTGAAACTTATTTTTAAAAAAAGCAATTATGCGTTTGGATAAAAGTGCTGAAGTTG S A E T Y F - K K Q L C V W I K V L K L V L K L I F K K S N Y A F G - K C - S C K C - N L F L K K A I M R L D K S A E V . . . . . . 96442 TTATGTCAAATGTGAAAAAGAAAAATAGAAGAAAGAGATGTTAGGGTTATATGGGTAATT L C Q M - K R K I E E R D V R V I W V I Y V K C E K E K - K K E M L G L Y G - F V M S N V K K K N R R K R C - G Y M G N . . . . . . 96382 TGGAGATTGTATAAAAATATTAAGGGAAAAAACATAAAAATGTGGTCAACTTAAAACAGC W R L Y K N I K G K N I K M W S T - N S G D C I K I L R E K T - K C G Q L K T A L E I V - K Y - G K K H K N V V N L K Q . . 96322 TTATAAGCTAAAAAAAAAA L - A K K K Y K L K K K L I S - K K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (99405 98947) SCR (e 0.908) Exon 1 99405 98947 ( 459 n); score: 0.908 PGS (99405 98947) SGN-E243215+ PGS (99277 98961) SGN-E578389- 3-phase translation of AGS-4 (-strand): . . . . . . 99405 TTATTGTAGATGACCAAATTTTTTCTTCCAATACGAAATTAAATTACAATATACACAAAA L L - M T K F F L P I R N - I T I Y T K Y C R - P N F F F Q Y E I K L Q Y T Q K I V D D Q I F S S N T K L N Y N I H K . . . . . . 99345 AAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAACAACAAAATAAGAA K I V - F F I L - T K E - K K T T K - E K - F N F L F F K L R N E R K Q Q N K N K N S L I F Y S L N - G M K E N N K I R . . . . . . 99285 TAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAAT - E I Q I I I I K E V K K - F M Y E K N K K F K - L - - K K S K N N L C M K K I I R N S N N Y N K R S Q K I I Y V - K K . . . . . . 99225 TAAAATATACCTTAAGCTTTGATAGAAGAATAATATATACCCCTAAATAATTTTTTTTTA - N I P - A L I E E - Y I P L N N F F L K I Y L K L - - K N N I Y P - I I F F - L K Y T L S F D R R I I Y T P K - F F F . . . . . . 99165 AAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGG K I R S N K Y K F K T N F L T S V K - R K L E V I N I N L K L I F - L P L N E G K N - K - - I - I - N - F F N F R - M K . . . . . . 99105 GTATATGTGAGCCATTTTATAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAG V Y V S H F I T A G V Y V S R L Y N G K Y M - A I L - R Q G Y M - A V C I T V R G I C E P F Y N G R G I C E P F V - R - . . . . . . 99045 GGCATATATAAGCCACTTTTATAACGAGGGGTATATCAGCTCCAAATGTCAAAGTTGAGG G I Y K P L L - R G V Y Q L Q M S K L R A Y I S H F Y N E G Y I S S K C Q S - G G H I - A T F I T R G I S A P N V K V E . . . . 98985 GGTATATCAGACCCTTTTCCCTAAAATTTAATAGCTAAT G I S D P F P - N L I A N V Y Q T L F P K I - - L G Y I R P F S L K F N S - Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (+strand): . . . . . . 98947 ATTAGCTATTAAATTTTAGGGAAAAGGGTCTGATATACCCCTCAACTTTGACATTTGGAG I S Y - I L G K R V - Y T P Q L - H L E L A I K F - G K G S D I P L N F D I W S - L L N F R E K G L I Y P S T L T F G . . . . . . 99007 CTGATATACCCCTCGTTATAAAAGTGGCTTATATATGCCCTTACCGTTATACAAACGGCT L I Y P S L - K W L I Y A L T V I Q T A - Y T P R Y K S G L Y M P L P L Y K R L A D I P L V I K V A Y I C P Y R Y T N G . . . . . . 99067 CACATATACCCCTGCCGTTATAAAATGGCTCACATATACCCTTCATTTAACGGAAGTTAA H I Y P C R Y K M A H I Y P S F N G S - T Y T P A V I K W L T Y T L H L T E V K S H I P L P L - N G S H I P F I - R K L . . . . . . 99127 AAAATTAGTTTTAAATTTATATTTATTACTTCTAATTTTTAAAAAAAAATTATTTAGGGG K I S F K F I F I T S N F - K K I I - G K L V L N L Y L L L L I F K K K L F R G K N - F - I Y I Y Y F - F L K K N Y L G . . . . . . 99187 TATATATTATTCTTCTATCAAAGCTTAAGGTATATTTTAATTTTTTTCATACATAAATTA Y I L F F Y Q S L R Y I L I F F I H K L I Y Y S S I K A - G I F - F F S Y I N Y V Y I I L L S K L K V Y F N F F H T - I . . . . . . 99247 TTTTTTGACTTCTTTTATTATAATTATTTGAATTTCTTATTCTTATTTTGTTGTTTTCTT F F D F F Y Y N Y L N F L F L F C C F L F L T S F I I I I - I S Y S Y F V V F F I F - L L L L - L F E F L I L I L L F S . . . . . . 99307 TCATTCCTTAGTTTAAAGAATAAAAAATTAAACTATTTTTTTTGTGTATATTGTAATTTA S F L S L K N K K L N Y F F C V Y C N L H S L V - R I K N - T I F F V Y I V I - F I P - F K E - K I K L F F L C I L - F . . . . 99367 ATTTCGTATTGGAAGAAAAAATTTGGTCATCTACAATAA I S Y W K K K F G H L Q - F R I G R K N L V I Y N N F V L E E K I W S S T I Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1+_PGL-18_AGS-4_PPS_1 (99184 99405) (frame '1'; 219 bp, 73 residues) 1 GYILFFYQSL RYILIFFIHK LFFDFFYYNY LNFLFLFCCF LSFLSLKNKK LNYFFCVYCN 61 LISYWKKKFG HLQ- >C10SLe0045H11.1+_PGL-18_AGS-4_PPS_2 (99011 99214) (frame '2'; 201 bp, 67 residues) 1 YTPRYKSGLY MPLPLYKRLT YTPAVIKWLT YTLHLTEVKK LVLNLYLLLL IFKKKLFRGI 61 YYSSIKA- AGS-5 (105009 104988,104903 104852,103691 103498,102869 102586,102369 102346,101687 101629,99749 99726) SCR (e 0.773 d 0.900 a 0.000,e 0.771 d 0.000 a 0.000,e 0.880 d 0.997 a 0.995,e 0.832 d 0.000 a 0.944,e 0.667 d 0.000 a 0.993,e 0.881 d 0.000 a 0.077,e 0.708) Exon 1 105009 104988 ( 22 n); score: 0.773 Intron 1 104987 104904 ( 84 n); Pd: 0.900 Pa: 0.000 Exon 2 104903 104852 ( 52 n); score: 0.771 Intron 2 104851 103692 (1160 n); Pd: 0.000 Pa: 0.000 Exon 3 103691 103498 ( 194 n); score: 0.880 Intron 3 103497 102870 ( 628 n); Pd: 0.997 Pa: 0.995 Exon 4 102869 102586 ( 284 n); score: 0.832 Intron 4 102585 102370 ( 216 n); Pd: 0.000 Pa: 0.944 Exon 5 102369 102346 ( 24 n); score: 0.667 Intron 5 102345 101688 ( 658 n); Pd: 0.000 Pa: 0.993 Exon 6 101687 101629 ( 59 n); score: 0.881 Intron 6 101628 99750 (1879 n); Pd: 0.000 Pa: 0.077 Exon 7 99749 99726 ( 24 n); score: 0.708 PGS (103522 103498,102869 102586,102369 102346,101687 101629,99749 99726) SGN-E260847+ PGS (105009 104988,104903 104852,103691 103498,102869 102586,102369 102346,101687 101625) SGN-E260891+ PGS (103675 103498,102869 102586,102369 102346,101687 101625) SGN-E204609+ PGS (103672 103498,102869 102586,102369 102346,101687 101625) SGN-E213435+ PGS (103672 103498,102869 102586,102369 102346,101687 101625) SGN-E375922+ PGS (103522 103498,102869 102586,102369 102346,101687 101625) SGN-E264899+ PGS (105009 104988,104903 104852,103691 103498,102869 102586,102369 102346,101687 101632) SGN-E261511+ PGS (103689 103498,102869 102586) SGN-E271397+ PGS (104886 104852,103691 103498,102869 102591) SGN-E249267+ PGS (103691 103498,102869 102635) SGN-E206895+ PGS (105009 104988,104903 104852,103691 103498,102869 102688) SGN-E256826+ PGS (104886 104852,103691 103498,102869 102698) SGN-E201821+ PGS (105009 104988,104903 104852,103691 103498,102869 102722) SGN-E244975+ PGS (105009 104988,104903 104852,103691 103498,102869 102734) SGN-E271466+ PGS (105009 104988,104903 104852,103691 103498,102869 102742) SGN-E264715+ 3-phase translation of AGS-5 (-strand): . . . : . . . 105009 TCATTTTTACTATATATAATTA : GAATCTTGAAATATGATTTAAATATATTCACAAAATTA S F L L Y I I : R I L K Y D L N I F T K L H F Y Y I - L : E S - N M I - I Y S Q N Y I F T I Y N - : N L E I - F K Y I H K I . . : . . . . 104865 TATCAGAAAAATAA : TTTCTTTATGGAAAGTACGGATTCATCAACCGGGACACGTCATCAG Y Q K N N : F F M E S T D S S T G T R H Q I R K I : I S L W K V R I H Q P G H V I S I S E K - : F L Y G K Y G F I N R D T S S . . . . . . 103645 CCTCAACTCCCACCGGGGTTTCGATTCCACCCGACGGACGAAGAACTCATCGTCCACTAC P Q L P P G F R F H P T D E E L I V H Y L N S H R G F D S T R R T K N S S S T T A S T P T G V S I P P D G R R T H R P L . . . . . . 103585 CTCAAAAAACGAGTCGCCGGCGCTCCGATTCCGGTGGATATTATTGGTGAAATTGATCTT L K K R V A G A P I P V D I I G E I D L S K N E S P A L R F R W I L L V K L I F P Q K T S R R R S D S G G Y Y W - N - S . . . : . . . 103525 TATAAGTTTGATCCATGGGAACTCCCTG : CTAAGGCAATATTCGGAGAGCAAGAATGGTTC Y K F D P W E L P : A K A I F G E Q E W F I S L I H G N S L : L R Q Y S E S K N G S L - V - S M G T P C : - G N I R R A R M V . . . . . . 102837 TTTTTTAGTCCAAGAGATAGAAAATATCCTAACGGGGCGAGGCCAAATCGGGCTGCAACA F F S P R D R K Y P N G A R P N R A A T F L V Q E I E N I L T G R G Q I G L Q H L F - S K R - K I S - R G E A K S G C N . . . . . . 102777 TCGGGTTATTGGAAGGCTACCGGAACCGACAAGCCGGTTTTTACTTCCGGTGGAACACAA S G Y W K A T G T D K P V F T S G G T Q R V I G R L P E P T S R F L L P V E H K I G L L E G Y R N R Q A G F Y F R W N T . . . . . . 102717 AAGGTTGGGGTAAAAAAGGCGCTCGTTTTTTACGGCGGTAAACCACCAAAAGGGGTAAAA K V G V K K A L V F Y G G K P P K G V K R L G - K R R S F F T A V N H Q K G - K K G W G K K G A R F L R R - T T K R G K . . . . . . 102657 ACTAATTGGATCATGCATGAATACAGAGTTGTAGAAAATAAAACAAATAACAAGCCACTT T N W I M H E Y R V V E N K T N N K P L L I G S C M N T E L - K I K Q I T S H L N - L D H A - I Q S C R K - N K - Q A T . . : . . : . . 102597 GGTTGTGATAAT : GCGGAGCTAAAAATTTCGATAAGG : CTAGATGATTGGGTTTTATGTCGA G C D N : A E L K I S I R : L D D W V L C R V V I M : R S - K F R - G : - M I G F Y V E W L - - : C G A K N F D K : A R - L G F M S . . . . : . . 101663 ATTTACAAGAAGAATAACACACAAAGGTCCATAGA : ACATTTTATAGTTGATTTGACATA I Y K K N N T Q R S I E : H F I V D L T F T R R I T H K G P - : N I L - L I - H N L Q E E - H T K V H R : T F Y S - F D I Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-18_AGS-5_PPS_1 (105009 104988,104903 104852,103691 103498,102869 102586,102369 102346,101687 101629,99749 99728) (frame '1'; 657 bp, 219 residues) 1 SFLLYIIRIL KYDLNIFTKL YQKNNFFMES TDSSTGTRHQ PQLPPGFRFH PTDEELIVHY 61 LKKRVAGAPI PVDIIGEIDL YKFDPWELPA KAIFGEQEWF FFSPRDRKYP NGARPNRAAT 121 SGYWKATGTD KPVFTSGGTQ KVGVKKALVF YGGKPPKGVK TNWIMHEYRV VENKTNNKPL 181 GCDNAELKIS IRLDDWVLCR IYKKNNTQRS IEHFIVDLT AGS-6 (103848 103498,102869 102556,101687 100920) SCR (e 0.993 d 0.997 a 0.995,e 1.000 d 0.984 a 0.993,e 0.991) Exon 1 103848 103498 ( 351 n); score: 0.993 Intron 1 103497 102870 ( 628 n); Pd: 0.997 Pa: 0.995 Exon 2 102869 102556 ( 314 n); score: 1.000 Intron 2 102555 101688 ( 868 n); Pd: 0.984 Pa: 0.993 Exon 3 101687 100920 ( 768 n); score: 0.991 PGS (101307 100920) SGN-E224605- PGS (101206 100920) SGN-E224681- PGS (101648 100954) SGN-E391830+ PGS (101648 100955) SGN-E397883- PGS (101416 100955) SGN-E391829- PGS (101395 100955) SGN-E392194- PGS (101216 100955) SGN-E391888- PGS (101647 101100) SGN-E246704+ PGS (101648 101341) SGN-E392195+ PGS (103625 103498,102869 102556,101687 101353) SGN-E263296+ PGS (103625 103498,102869 102556,101687 101395) SGN-E260846+ PGS (103625 103498,102869 102556,101687 101507) SGN-E262770+ PGS (103680 103498,102869 102556,101687 101606) SGN-E276952+ PGS (103827 103498,102869 102556,101687 101655) SGN-E276804+ PGS (103848 103498,102869 102575) SGN-E260313+ PGS (103827 103498,102869 102686) SGN-E276640+ PGS (103827 103498,102869 102767) SGN-E276646+ PGS (103742 103530) SGN-E264205+ 3-phase translation of AGS-6 (-strand): . . . . . . 103848 TAAATTCCTTCTTGTTTATCATTTTCTCTCTTCCCAAAAAAAAATCCCAAAATTTAATCA - I P S C L S F S L F P K K N P K I - S K F L L V Y H F L S S Q K K I P K F N H N S F L F I I F S L P K K K S Q N L I . . . . . . 103788 TAATACAATTCGAATTTATCAACCTCGTACTACGTACATATTTTTGTTGGTACGTAAAAT - Y N S N L S T S Y Y V H I F V G T - N N T I R I Y Q P R T T Y I F L L V R K I I I Q F E F I N L V L R T Y F C W Y V K . . . . . . 103728 ACTGAATTCAGGTCAACTCAAACATCGTAAATTGTGATTTCTTTATGGAAAGTACGGATT T E F R S T Q T S - I V I S L W K V R I L N S G Q L K H R K L - F L Y G K Y G F Y - I Q V N S N I V N C D F F M E S T D . . . . . . 103668 CATCAACCGGGACACGTCATCAGCCTCAACTCCCACCGGGGTTTCGATTCCACCCGACGG H Q P G H V I S L N S H R G F D S T R R I N R D T S S A S T P T G V S I P P D G S S T G T R H Q P Q L P P G F R F H P T . . . . . . 103608 ACGAAGAACTCATCGTCCACTACCTCAAAAAACGAGTCGCCGGCGCTCCGATTCCGGTGG T K N S S S T T S K N E S P A L R F R W R R T H R P L P Q K T S R R R S D S G G D E E L I V H Y L K K R V A G A P I P V . . . . . . : 103548 ATATTATTGGTGAAATTGATCTTTATAAGTTTGATCCATGGGAACTCCCTG : CTAAGGCAA I L L V K L I F I S L I H G N S L : L R Q Y Y W - N - S L - V - S M G T P C : - G N D I I G E I D L Y K F D P W E L P : A K A . . . . . . 102860 TATTCGGAGAGCAAGAATGGTTCTTTTTTAGTCCAAGAGATAGAAAATATCCTAACGGGG Y S E S K N G S F L V Q E I E N I L T G I R R A R M V L F - S K R - K I S - R G I F G E Q E W F F F S P R D R K Y P N G . . . . . . 102800 CGAGGCCAAATCGGGCTGCAACATCGGGTTATTGGAAGGCTACCGGAACCGACAAGCCGG R G Q I G L Q H R V I G R L P E P T S R E A K S G C N I G L L E G Y R N R Q A G A R P N R A A T S G Y W K A T G T D K P . . . . . . 102740 TTTTTACTTCCGGTGGAACACAAAAGGTTGGGGTAAAAAAGGCGCTCGTTTTTTACGGCG F L L P V E H K R L G - K R R S F F T A F Y F R W N T K G W G K K G A R F L R R V F T S G G T Q K V G V K K A L V F Y G . . . . . . 102680 GTAAACCACCAAAAGGGGTAAAAACTAATTGGATCATGCATGAATACAGAGTTGTAGAAA V N H Q K G - K L I G S C M N T E L - K - T T K R G K N - L D H A - I Q S C R K G K P P K G V K T N W I M H E Y R V V E . . . . . . 102620 ATAAAACAAATAACAAGCCACTTGGTTGTGATAATATTGTTGCCAACAAAAAAGGATCTT I K Q I T S H L V V I I L L P T K K D L - N K - Q A T W L - - Y C C Q Q K R I F N K T N N K P L G C D N I V A N K K G S . : . . . . . 102560 TGAGG : CTAGATGATTGGGTTTTATGTCGAATTTACAAGAAGAATAACACACAAAGGTCCA - G : - M I G F Y V E F T R R I T H K G P E : A R - L G F M S N L Q E E - H T K V H L R : L D D W V L C R I Y K K N N T Q R S . . . . . . 101632 TAGATGATTTGCATGATATGTTGGGATCGATACCACAAAATGTACCAAATTCAATATTAC - M I C M I C W D R Y H K M Y Q I Q Y Y R - F A - Y V G I D T T K C T K F N I T I D D L H D M L G S I P Q N V P N S I L . . . . . . 101572 AAGGAATAAAGCCTTCAAACTATGGTACAATATTGCTCGAAAATGAATCGAATATGTACG K E - S L Q T M V Q Y C S K M N R I C T R N K A F K L W Y N I A R K - I E Y V R Q G I K P S N Y G T I L L E N E S N M Y . . . . . . 101512 ATGGAATTATGAATAACACGAACGATATTATCAACAATAATAATAGATCCATTCCACAAA M E L - I T R T I L S T I I I D P F H K W N Y E - H E R Y Y Q Q - - - I H S T N D G I M N N T N D I I N N N N R S I P Q . . . . . . 101452 TATCGTCAAAGAGAACGATGCATGGAGGTTTGTATTGGAATAACGACGAAGCAACAACAA Y R Q R E R C M E V C I G I T T K Q Q Q I V K E N D A W R F V L E - R R S N N N I S S K R T M H G G L Y W N N D E A T T . . . . . . 101392 CAACAACAACTATTGATAGGAACCATTCTCCAAATACAAAAAGGTTCCTTGTTGAGAACA Q Q Q L L I G T I L Q I Q K G S L L R T N N N Y - - E P F S K Y K K V P C - E Q T T T T I D R N H S P N T K R F L V E N . . . . . . 101332 ACGAGGACGATGGACTTAACATGAATAATATTTCGCGAATTACAAATCATGAACAAAGTA T R T M D L T - I I F R E L Q I M N K V R G R W T - H E - Y F A N Y K S - T K - N E D D G L N M N N I S R I T N H E Q S . . . . . . 101272 GCTCCATTGCCAATTTCCTGAGCCAGTTTCCTCAAAATCCTTCGATTCAACAACAACAAC A P L P I S - A S F L K I L R F N N N N L H C Q F P E P V S S K S F D S T T T T S S I A N F L S Q F P Q N P S I Q Q Q Q . . . . . . 101212 AACAACAAGAAGAAGTATTGGGATCTCTTAATGATGGGGTCGTCTTTCGACAACCTTATA N N K K K Y W D L L M M G S S F D N L I T T R R S I G I S - - W G R L S T T L - Q Q Q E E V L G S L N D G V V F R Q P Y . . . . . . 101152 ATCAAGTTACTGGCATGAATTGGTACTCTTAAAGATATAAAAAGGCAAAAAATAGTTAGC I K L L A - I G T L K D I K R Q K I V S S S Y W H E L V L L K I - K G K K - L A N Q V T G M N W Y S - R Y K K A K N S - . . . . . . 101092 CCTGTAAAATCAATCGATCAATCAATCATAGATATATTATATATGGATTTCGTTATATTT P V K S I D Q S I I D I L Y M D F V I F L - N Q S I N Q S - I Y Y I W I S L Y F P C K I N R S I N H R Y I I Y G F R Y I . . . . . . 101032 TACTTTTAGTTAGAATTAATATATAGAATATCTTCTATCTCACATTAACAAATAAGAACA Y F - L E L I Y R I S S I S H - Q I R T T F S - N - Y I E Y L L S H I N K - E H L L L V R I N I - N I F Y L T L T N K N . . . . . . 100972 TTTATAACAAATAGTGAAACTAAACTATCTACCATTAGATAGACATTTTGTTA F I T N S E T K L S T I R - T F C L - Q I V K L N Y L P L D R H F V I Y N K - - N - T I Y H - I D I L L Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-18_AGS-6_PPS_1 (103723 103498,102869 102556,101687 101121) (frame '0'; 1104 bp, 368 residues) 1 IQVNSNIVNC DFFMESTDSS TGTRHQPQLP PGFRFHPTDE ELIVHYLKKR VAGAPIPVDI 61 IGEIDLYKFD PWELPAKAIF GEQEWFFFSP RDRKYPNGAR PNRAATSGYW KATGTDKPVF 121 TSGGTQKVGV KKALVFYGGK PPKGVKTNWI MHEYRVVENK TNNKPLGCDN IVANKKGSLR 181 LDDWVLCRIY KKNNTQRSID DLHDMLGSIP QNVPNSILQG IKPSNYGTIL LENESNMYDG 241 IMNNTNDIIN NNNRSIPQIS SKRTMHGGLY WNNDEATTTT TTIDRNHSPN TKRFLVENNE 301 DDGLNMNNIS RITNHEQSSS IANFLSQFPQ NPSIQQQQQQ QEEVLGSLND GVVFRQPYNQ 361 VTGMNWYS- AGS-7 (103684 103498,102869 102586,102369 102346,101687 101592) SCR (e 0.765 d 0.997 a 0.995,e 0.824 d 0.000 a 0.944,e 0.667 d 0.000 a 0.993,e 0.740) Exon 1 103684 103498 ( 187 n); score: 0.765 Intron 1 103497 102870 ( 628 n); Pd: 0.997 Pa: 0.995 Exon 2 102869 102586 ( 284 n); score: 0.824 Intron 2 102585 102370 ( 216 n); Pd: 0.000 Pa: 0.944 Exon 3 102369 102346 ( 24 n); score: 0.667 Intron 3 102345 101688 ( 658 n); Pd: 0.000 Pa: 0.993 Exon 4 101687 101592 ( 96 n); score: 0.740 PGS (103684 103498,102869 102586,102369 102346,101687 101592) SGN-E263151+ 3-phase translation of AGS-7 (-strand): . . . . . . 103684 ATGGAAAGTACGGATTCATCAACCGGGACACGTCATCAGCCTCAACTCCCACCGGGGTTT M E S T D S S T G T R H Q P Q L P P G F W K V R I H Q P G H V I S L N S H R G F G K Y G F I N R D T S S A S T P T G V . . . . . . 103624 CGATTCCACCCGACGGACGAAGAACTCATCGTCCACTACCTCAAAAAACGAGTCGCCGGC R F H P T D E E L I V H Y L K K R V A G D S T R R T K N S S S T T S K N E S P A S I P P D G R R T H R P L P Q K T S R R . . . . . . 103564 GCTCCGATTCCGGTGGATATTATTGGTGAAATTGATCTTTATAAGTTTGATCCATGGGAA A P I P V D I I G E I D L Y K F D P W E L R F R W I L L V K L I F I S L I H G N R S D S G G Y Y W - N - S L - V - S M G . : . . . . . 103504 CTCCCTG : CTAAGGCAATATTCGGAGAGCAAGAATGGTTCTTTTTTAGTCCAAGAGATAGA L P : A K A I F G E Q E W F F F S P R D R S L : L R Q Y S E S K N G S F L V Q E I E T P C : - G N I R R A R M V L F - S K R - . . . . . . 102816 AAATATCCTAACGGGGCGAGGCCAAATCGGGCTGCAACATCGGGTTATTGGAAGGCTACC K Y P N G A R P N R A A T S G Y W K A T N I L T G R G Q I G L Q H R V I G R L P K I S - R G E A K S G C N I G L L E G Y . . . . . . 102756 GGAACCGACAAGCCGGTTTTTACTTCCGGTGGAACACAAAAGGTTGGGGTAAAAAAGGCG G T D K P V F T S G G T Q K V G V K K A E P T S R F L L P V E H K R L G - K R R R N R Q A G F Y F R W N T K G W G K K G . . . . . . 102696 CTCGTTTTTTACGGCGGTAAACCACCAAAAGGGGTAAAAACTAATTGGATCATGCATGAA L V F Y G G K P P K G V K T N W I M H E S F F T A V N H Q K G - K L I G S C M N A R F L R R - T T K R G K N - L D H A - . . . . . . : 102636 TACAGAGTTGTAGAAAATAAAACAAATAACAAGCCACTTGGTTGTGATAAT : GCGGAGCTA Y R V V E N K T N N K P L G C D N : A E L T E L - K I K Q I T S H L V V I M : R S - I Q S C R K - N K - Q A T W L - - : C G A . . : . . . . 102360 AAAATTTCGATAAGG : CTAGATGATTGGGTTTTATGTCGAATTTACAAGAAGAATAACACA K I S I R : L D D W V L C R I Y K K N N T K F R - G : - M I G F Y V E F T R R I T H K N F D K : A R - L G F M S N L Q E E - H . . . . . . 101642 CAAAGGTCCATAGATGATTTGCATGATATGTTGGGATCGATACCACAAAAT Q R S I D D L H D M L G S I P Q N K G P - M I C M I C W D R Y H K T K V H R - F A - Y V G I D T T K Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-18_AGS-7_PPS_1 (103684 103498,102869 102586,102369 102346,101687 101592) (frame '1'; 591 bp, 197 residues) 1 MESTDSSTGT RHQPQLPPGF RFHPTDEELI VHYLKKRVAG APIPVDIIGE IDLYKFDPWE 61 LPAKAIFGEQ EWFFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVFTSG GTQKVGVKKA 121 LVFYGGKPPK GVKTNWIMHE YRVVENKTNN KPLGCDNAEL KISIRLDDWV LCRIYKKNNT 181 QRSIDDLHDM LGSIPQN AGS-8 (105009 104988,104903 104852,103691 103498,102869 102588,102369 102346,101687 101644) SCR (e 0.773 d 0.900 a 0.000,e 0.644 d 0.000 a 0.000,e 0.753 d 0.997 a 0.995,e 0.826 d 0.000 a 0.944,e 0.583 d 0.000 a 0.993,e 0.935) Exon 1 105009 104988 ( 22 n); score: 0.773 Intron 1 104987 104904 ( 84 n); Pd: 0.900 Pa: 0.000 Exon 2 104903 104852 ( 52 n); score: 0.644 Intron 2 104851 103692 (1160 n); Pd: 0.000 Pa: 0.000 Exon 3 103691 103498 ( 194 n); score: 0.753 Intron 3 103497 102870 ( 628 n); Pd: 0.997 Pa: 0.995 Exon 4 102869 102588 ( 282 n); score: 0.826 Intron 4 102587 102370 ( 218 n); Pd: 0.000 Pa: 0.944 Exon 5 102369 102346 ( 24 n); score: 0.583 Intron 5 102345 101688 ( 658 n); Pd: 0.000 Pa: 0.993 Exon 6 101687 101644 ( 44 n); score: 0.935 PGS (103672 103498,102869 102588,102369 102346,101687 101644) SGN-E375426+ PGS (105009 104988,104903 104852,103691 103498,102869 102588,102369 102346,101687 101657) SGN-E328666+ PGS (103672 103498,102869 102588,102369 102346,101687 101662) SGN-E204868+ 3-phase translation of AGS-8 (-strand): . . . : . . . 105009 TCATTTTTACTATATATAATTA : GAATCTTGAAATATGATTTAAATATATTCACAAAATTA S F L L Y I I : R I L K Y D L N I F T K L H F Y Y I - L : E S - N M I - I Y S Q N Y I F T I Y N - : N L E I - F K Y I H K I . . : . . . . 104865 TATCAGAAAAATAA : TTTCTTTATGGAAAGTACGGATTCATCAACCGGGACACGTCATCAG Y Q K N N : F F M E S T D S S T G T R H Q I R K I : I S L W K V R I H Q P G H V I S I S E K - : F L Y G K Y G F I N R D T S S . . . . . . 103645 CCTCAACTCCCACCGGGGTTTCGATTCCACCCGACGGACGAAGAACTCATCGTCCACTAC P Q L P P G F R F H P T D E E L I V H Y L N S H R G F D S T R R T K N S S S T T A S T P T G V S I P P D G R R T H R P L . . . . . . 103585 CTCAAAAAACGAGTCGCCGGCGCTCCGATTCCGGTGGATATTATTGGTGAAATTGATCTT L K K R V A G A P I P V D I I G E I D L S K N E S P A L R F R W I L L V K L I F P Q K T S R R R S D S G G Y Y W - N - S . . . : . . . 103525 TATAAGTTTGATCCATGGGAACTCCCTG : CTAAGGCAATATTCGGAGAGCAAGAATGGTTC Y K F D P W E L P : A K A I F G E Q E W F I S L I H G N S L : L R Q Y S E S K N G S L - V - S M G T P C : - G N I R R A R M V . . . . . . 102837 TTTTTTAGTCCAAGAGATAGAAAATATCCTAACGGGGCGAGGCCAAATCGGGCTGCAACA F F S P R D R K Y P N G A R P N R A A T F L V Q E I E N I L T G R G Q I G L Q H L F - S K R - K I S - R G E A K S G C N . . . . . . 102777 TCGGGTTATTGGAAGGCTACCGGAACCGACAAGCCGGTTTTTACTTCCGGTGGAACACAA S G Y W K A T G T D K P V F T S G G T Q R V I G R L P E P T S R F L L P V E H K I G L L E G Y R N R Q A G F Y F R W N T . . . . . . 102717 AAGGTTGGGGTAAAAAAGGCGCTCGTTTTTTACGGCGGTAAACCACCAAAAGGGGTAAAA K V G V K K A L V F Y G G K P P K G V K R L G - K R R S F F T A V N H Q K G - K K G W G K K G A R F L R R - T T K R G K . . . . . . 102657 ACTAATTGGATCATGCATGAATACAGAGTTGTAGAAAATAAAACAAATAACAAGCCACTT T N W I M H E Y R V V E N K T N N K P L L I G S C M N T E L - K I K Q I T S H L N - L D H A - I Q S C R K - N K - Q A T . : . . . : . . 102597 GGTTGTGATA : GCGGAGCTAAAAATTTCGATAAGG : CTAGATGATTGGGTTTTATGTCGAAT G C D : S G A K N F D K : A R - L G F M S N V V I : A E L K I S I R : L D D W V L C R I W L - - : R S - K F R - G : - M I G F Y V E . . 101661 TTACAAGAAGAATAACAC L Q E E - H Y K K N N F T R R I T Maximal non-overlapping open reading frames (>= 64 codons): >C10SLe0045H11.1-_PGL-18_AGS-8_PPS_1 (105009 104988,104903 104852,103691 103498,102869 102588,102369 102346,101687 101680) (frame '1'; 579 bp, 193 residues) 1 SFLLYIIRIL KYDLNIFTKL YQKNNFFMES TDSSTGTRHQ PQLPPGFRFH PTDEELIVHY 61 LKKRVAGAPI PVDIIGEIDL YKFDPWELPA KAIFGEQEWF FFSPRDRKYP NGARPNRAAT 121 SGYWKATGTD KPVFTSGGTQ KVGVKKALVF YGGKPPKGVK TNWIMHEYRV VENKTNNKPL 181 GCDSGAKNFD KAR- ... finished at: Mon Aug 21 22:56:06 2006