##gff-version 3
# This output was generated with AUGUSTUS (version 2.3).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de)
# and Oliver Keller (keller@cs.uni-goettingen.de).
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters ...
# tomato version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C10HBa0053L19-iysm0/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 137766, name = C10HBa0053L19.1) -----
#
# Predicted genes for sequence number 1 on both strands
# start gene g1
C10HBa0053L19.1	AUGUSTUS_ab_initio	gene	28063	31439	1	-	.	ID=g1
C10HBa0053L19.1	AUGUSTUS_ab_initio	transcript	28063	31439	1	-	.	ID=g1.t1;Parent=g1
C10HBa0053L19.1	AUGUSTUS_ab_initio	stop_codon	28063	28065	.	-	0	Parent=g1.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	28501	30836	1	-	.	Parent=g1.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	28063	28500	1	-	0	ID=g1.t1.cds;Parent=g1.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	30837	31439	1	-	0	ID=g1.t1.cds;Parent=g1.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	start_codon	31437	31439	.	-	0	Parent=g1.t1
# protein sequence = [MAQKEKKSSPGIPWRTRIALSFVSTVTDYSRRQNGTVNRRLLGIFGLKTSANPNPVNGVKSYDVTVDSSRDLWFRLFI
# PTTDESRNLSSLPIIVFFHGGGFVYLSPDTKAYDAVCRRFARKTPAVVVSVNYRLAPEHKYPAQYDDGFDVLKFLDNEKSRELLPENVDLSRCFLAGD
# SAGGNLAHHVAKRASEMTSNFGALKVIGLVAIQPFFGGEERTESELKLVDVDPLISVRKTDWMWNAFIPPGEGMDRDHEVINVSGPRAVDISKLDKFP
# ATVVVVGGFDPLKDWQRRYYEWLKRSGKDVHLSEYPTMVHAFYIFPEVPEATQLILEVKDFINKQCSKVVKN]
# end gene g1
###
# start gene g2
C10HBa0053L19.1	AUGUSTUS_ab_initio	gene	37367	38528	0.79	-	.	ID=g2
C10HBa0053L19.1	AUGUSTUS_ab_initio	transcript	37367	38528	0.79	-	.	ID=g2.t1;Parent=g2
C10HBa0053L19.1	AUGUSTUS_ab_initio	stop_codon	37367	37369	.	-	0	Parent=g2.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	38171	38255	0.87	-	.	Parent=g2.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	38341	38430	0.86	-	.	Parent=g2.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	37367	38170	0.88	-	0	ID=g2.t1.cds;Parent=g2.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	38256	38340	0.87	-	1	ID=g2.t1.cds;Parent=g2.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	38431	38528	0.79	-	0	ID=g2.t1.cds;Parent=g2.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	start_codon	38526	38528	.	-	0	Parent=g2.t1
# protein sequence = [MGSNNNIFLGDEESQLSAGNTNRVQPYSSTPKKNTIDDEGKKQNFLSLSQRLGVPDFFSLDVWRASMGELLGSAVLVF
# MVDTIVISTSESDAEMPNLIMSILLAIVLIVLLLAVVPVSGGHLNPVISFSAALVGIISMSRAIIYIMAQCLGAVLGALALKAVVSSTIEDTFSLGGC
# TITIIAPGPNGPVTLGLETAQALWLEIFCTFVLLFASIWMAYDHRQAKALGLVTVLTIVGLVLGLLVFISTTVTTKRGYAGVGMNPARCLGPAIVRGG
# HLWDGHWIFWIGPTISCLAFYVYTKIIPPKHFHAEYGYKHDFVGVVKALFESNV]
# end gene g2
###
# start gene g3
C10HBa0053L19.1	AUGUSTUS_ab_initio	gene	39398	40551	0.79	-	.	ID=g3
C10HBa0053L19.1	AUGUSTUS_ab_initio	transcript	39398	40551	0.79	-	.	ID=g3.t1;Parent=g3
C10HBa0053L19.1	AUGUSTUS_ab_initio	stop_codon	39398	39400	.	-	0	Parent=g3.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	40202	40301	0.84	-	.	Parent=g3.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	40387	40456	0.97	-	.	Parent=g3.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	39398	40201	0.82	-	0	ID=g3.t1.cds;Parent=g3.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	40302	40386	0.81	-	1	ID=g3.t1.cds;Parent=g3.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	40457	40551	1	-	0	ID=g3.t1.cds;Parent=g3.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	start_codon	40549	40551	.	-	0	Parent=g3.t1
# protein sequence = [MGSNNNAVFGDEENQFSCGTNKVQPCSSTPKRSTIDDEGKKLNFLSFSERLGVSDFFSLDVWRASIGELLGTAVLVFM
# LDTIVISTLESDIKMPNLILSILAAVIITILLLAVVPVSGGHINPVISFSAALVGIISMSRAIIYIMAQCLGAILGALALKAVVSSSIEDTFSLGGCT
# ITIIAPGPNGPISVGLETAQALWLEIFCTFVFLFASIWMAYDHRQAKALGHVTVLSIVGVVLGLLVFISTTVTAKKGYAGAGMNPARCFGPAIVRGGH
# LWDGHWIFWVGPIIGCVAFYVYTKIIPTKHFNAEYGYKHDFVGVVKALVGSNV]
# end gene g3
###
# start gene g4
C10HBa0053L19.1	AUGUSTUS_ab_initio	gene	43146	50369	0.42	-	.	ID=g4
C10HBa0053L19.1	AUGUSTUS_ab_initio	transcript	43146	50369	0.42	-	.	ID=g4.t1;Parent=g4
C10HBa0053L19.1	AUGUSTUS_ab_initio	stop_codon	43146	43148	.	-	0	Parent=g4.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	43950	46537	0.78	-	.	Parent=g4.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	46642	46908	0.63	-	.	Parent=g4.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	47033	49163	0.98	-	.	Parent=g4.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	49260	50339	0.89	-	.	Parent=g4.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	43146	43949	0.99	-	0	ID=g4.t1.cds;Parent=g4.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	46538	46641	0.51	-	2	ID=g4.t1.cds;Parent=g4.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	46909	47032	0.85	-	0	ID=g4.t1.cds;Parent=g4.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	49164	49259	0.98	-	0	ID=g4.t1.cds;Parent=g4.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	50340	50369	0.91	-	0	ID=g4.t1.cds;Parent=g4.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	start_codon	50367	50369	.	-	0	Parent=g4.t1
# protein sequence = [MECEEDEDGETLSLIALCRPSRSSPALHRQLQSPQQQHLHLQMDRNWMYNMTNFGRMGLRPEFVEGVIGFVEYAKTLD
# PFQLSGEEAPNVECKIFFEQLESASRPLYEGSPHSQLSIAVWRASMGELIGSAVLVFMLDTIVISTLESDTKMPNLIMSILIAIVITILLLAVVPVSG
# GHINPIISFSAALVGIISMSRAIIYIMAQCVGAILGALALRAVVSSSIEDTFSLGGCTITIIASGPNGPVIVGLEMAQALWLEIFCTFVFLFASIWMA
# YDHRQAKALGLVTVLSIVGLVLGLLVFISTTITAKRGYGGAGMNPARCLGPALVRGGHLWDGHWIFWVGPTIGCVAFYVYTKIIPAEHFNAEYGYKHD
# FVGVVKALFGSNV]
# end gene g4
###
# start gene g5
C10HBa0053L19.1	AUGUSTUS_ab_initio	gene	60236	61524	0.98	-	.	ID=g5
C10HBa0053L19.1	AUGUSTUS_ab_initio	transcript	60236	61524	0.98	-	.	ID=g5.t1;Parent=g5
C10HBa0053L19.1	AUGUSTUS_ab_initio	stop_codon	60236	60238	.	-	0	Parent=g5.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	61034	61130	0.98	-	.	Parent=g5.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	61216	61429	0.98	-	.	Parent=g5.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	60236	61033	1	-	0	ID=g5.t1.cds;Parent=g5.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	61131	61215	0.98	-	1	ID=g5.t1.cds;Parent=g5.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	61430	61524	1	-	0	ID=g5.t1.cds;Parent=g5.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	start_codon	61522	61524	.	-	0	Parent=g5.t1
# protein sequence = [MASKNNVVFGDEENQLPGGTNKVQPCSSTSRKNTIDDEGKKPIFLSFSERLGVPDFFCLDVWRASMGELLGSAVLVFM
# LDTIVISTLESDTKMPNLIMSILIAIVITILLLAVVPVSGGHINPIISFSAALVGIISMSRAIIYIMAQCVGAILGALALRAVVSSSIEDTFSLGGCT
# ITIIAPGPNGPVIVGLEMAQALWLEIFCTFVFLFASIWMAYDHRQAKSLGHVTVLSIVGVVLGLLVFISTTVTARKGYGGAGMNPARCLGPAIIRGGH
# LWDGHWIFWVGPTIGCVAFYVYTKIIPPKHFLGEYGFKHDFVGVVKALSNV]
# end gene g5
###
# start gene g6
C10HBa0053L19.1	AUGUSTUS_ab_initio	gene	84177	85355	1	-	.	ID=g6
C10HBa0053L19.1	AUGUSTUS_ab_initio	transcript	84177	85355	1	-	.	ID=g6.t1;Parent=g6
C10HBa0053L19.1	AUGUSTUS_ab_initio	stop_codon	84177	84179	.	-	0	Parent=g6.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	84975	85070	1	-	.	Parent=g6.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	85162	85260	1	-	.	Parent=g6.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	84177	84974	1	-	0	ID=g6.t1.cds;Parent=g6.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	85071	85161	1	-	1	ID=g6.t1.cds;Parent=g6.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	85261	85355	1	-	0	ID=g6.t1.cds;Parent=g6.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	start_codon	85353	85355	.	-	0	Parent=g6.t1
# protein sequence = [MASNSNVVFGDEESQISGGTNRVQPCSSTPRKINTIDDDEGKKHNFLSLSQRLGVADFFCLDVWRASMGELLGSAVLV
# FMLDTIVISTFESETKMPNLIMSILIAVVITILLLAVVPVSGGHINPVISFSAALVGIISMSRAIIYIVAQCVGAILGALALRAVVSSSIEDTFSLGG
# CTVTIIAPGPNGPVIVGLETAQALWLEIFCTFVFLFASIWMAYDHRQAKALGHVTVLSIVGLVLGLLVFISTTVTAKKGYGGAGINPARCLGPAIIRG
# GHLWDGHWIFWVGPTIGCVAFYVYTKIIPTKHFLAEYGFKHDFVGVVKALSNV]
# end gene g6
###
# start gene g7
C10HBa0053L19.1	AUGUSTUS_ab_initio	gene	92645	97414	0.21	-	.	ID=g7
C10HBa0053L19.1	AUGUSTUS_ab_initio	transcript	92645	97414	0.21	-	.	ID=g7.t1;Parent=g7
C10HBa0053L19.1	AUGUSTUS_ab_initio	stop_codon	92645	92647	.	-	0	Parent=g7.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	92694	92780	1	-	.	Parent=g7.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	92906	93355	0.56	-	.	Parent=g7.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	93437	93561	0.98	-	.	Parent=g7.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	93703	94324	0.9	-	.	Parent=g7.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	94525	97191	0.49	-	.	Parent=g7.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	92645	92693	1	-	1	ID=g7.t1.cds;Parent=g7.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	92781	92905	1	-	0	ID=g7.t1.cds;Parent=g7.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	93356	93436	0.62	-	0	ID=g7.t1.cds;Parent=g7.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	93562	93702	1	-	0	ID=g7.t1.cds;Parent=g7.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	94325	94524	0.89	-	2	ID=g7.t1.cds;Parent=g7.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	97192	97414	0.76	-	0	ID=g7.t1.cds;Parent=g7.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	start_codon	97412	97414	.	-	0	Parent=g7.t1
# protein sequence = [MMAPRRPIHAVSTWVKRQPPKVKAFLAVVTGMTVLVLLRAIVHDHDNLFVAAEAVHAIGISVLIYKLTKEKTCAGISL
# KSQELTALFLAVRLYCSFVMEYDIHTLLDLATLATTLWVIFMIRFKLESSYMEDKDNCSVYYVVIPCAALALLIHPSTSHHLINRIFWAFCVYLEAVS
# VLPQLRVMQNTQIVEPFTAHYVFALGVARFLSCAHWILQVLDSNGHLLVALGHGLWPSMVLISEVVQTFILADFCYYYVKSVFGGQLVLRLPSGVV]
# end gene g7
###
# start gene g8
C10HBa0053L19.1	AUGUSTUS_ab_initio	gene	102945	113912	0.06	+	.	ID=g8
C10HBa0053L19.1	AUGUSTUS_ab_initio	transcript	102945	113912	0.06	+	.	ID=g8.t1;Parent=g8
C10HBa0053L19.1	AUGUSTUS_ab_initio	start_codon	102945	102947	.	+	0	Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	103160	103816	0.87	+	.	Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	105426	105669	0.62	+	.	Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	107229	108250	0.49	+	.	Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	108614	108770	0.93	+	.	Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	110432	111964	0.97	+	.	Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	112404	112601	0.84	+	.	Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	112762	113440	0.84	+	.	Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	113545	113653	0.93	+	.	Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	113746	113835	0.77	+	.	Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	102945	103159	0.71	+	0	ID=g8.t1.cds;Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	103817	105425	0.54	+	1	ID=g8.t1.cds;Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	105670	107228	0.29	+	0	ID=g8.t1.cds;Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	108251	108613	0.97	+	1	ID=g8.t1.cds;Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	108771	110431	0.91	+	1	ID=g8.t1.cds;Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	111965	112403	0.69	+	2	ID=g8.t1.cds;Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	112602	112761	0.87	+	1	ID=g8.t1.cds;Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	113441	113544	0.93	+	0	ID=g8.t1.cds;Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	113654	113745	0.98	+	1	ID=g8.t1.cds;Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	113836	113912	0.56	+	2	ID=g8.t1.cds;Parent=g8.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	stop_codon	113910	113912	.	+	0	Parent=g8.t1
# protein sequence = [MKMKKRKQHSTDKEEGCSRPSKSHRTEQLAGEVEEPIAVPESEEAINIQDDSPWRNLQLILSLQNNSIPLQEKLELAY
# NYVKSRTEGAGECREDIQTVNFSRVVVFLNNWVQRILVSSEKKIRVEGDKHAMEIAGSYSDCRCWVIFRFCLEESKKMGVSLHFLRDLLRVIQYISRD
# ALIRLGDQPMVSEDLELHNIVLDCISLVFSSHGGISNENLDLWISLISVVLEFLRKVLNDKLDGTKAGIFAKQLSCCLLEPFVKFLKVHPTRKNGFRE
# FIDKLFEDLVIVWDVLDVHGCESNPEWKRNLLVLIEEVLSQALFHPTHIDGFLSLQSTSKYRHSDDKKSKEEKTFIKSYHRHLFDKLGKIITGKNESA
# LSGAGELLRLFINCIYMKNGVVVGAEAFRHQEGNSTAFSRSSSNSSAISTSPPQYALPAEARKSVFDFFVEIMELFLSEIYTHSQAGVDAEPLYMGLS
# TLRSINKLLATCVQEKVYIRTEDTSEGACFNFLKLIYDAIMSLAVQMNRLLQSFDSPEERIPGQLLILAAKEIFLAIHYLVDIEYEVVGDDLEKLWGM
# ILALTTSSHPLMKASDQHLLTSEVLKLGCRLVHLYSELRQVNIAIFTLSKAVRDVLSSFRSNKVIKSSMLCHSFANSMSMLLCSPEFRLSIRNAVKSI
# PEGQASGCIRQMIVDVAESLEWIKSEYQLPAESDFAEPCFSSCGTLCFDLKAEILGKSLTEMYTLILDSITITTGNSNLIALSVKDLMAVIRPGLSSL
# VSQGPDILSVFFTLVTGRGFSKAAALGNDILSACWIVVFFFRLYMSCRSLQRQAISLMPPDASRKMSRVLTDSFSAYSAKDWLESSGWEDESYFSWVV
# QPSAPLPAVLHIIAEFCDQHTVIVCYPLIYVLSGMALQRLVDLNRQMKSIDYLLQRNNNIVQTILDNDAGLSSYSKDTKKWNKHVSTLKKEAADLTEF
# MIRYLSLVTEDRIYKSTVDQVSSKNTYLNHLYETEVWDLGTGSIDEKLFPSALWWIICQNVDIWCPHASKKDMKKFLLALIQNSRPCLSTNMSDLRNY
# IEKSGHVTGVNRHLISVELLSNIILYEQRVSSWVASSAHTFSTVLALLMTIKSSCITCHNFVKEPFYESMHMASVFCQILKKSVSSIFSYVGEVDVNG
# APDWENAILMLEKSSTIFFRSNHPQDNDSLLIEPVHHLLNDIPAELIEKEPSPLNAEITRCRAFLNLLSWIPKGHLSSKSFSRYATSILNIDRLVVGC
# LFDQHGSVALCSRYELLRLLLTCRRTFKNLLMASREGKKGHQSLLACFLSESSPVFWLLKSLSAVTGFLSVISQETSPQLKHMIFSLMDHTSFILLTL
# FKDQFEAIFADGQEETVLRENGPCSQFSDNNDAWRSVSSVAGTLTGHAQELLDSLNLAVVNRKVGDLAGLQEMDKISPVISCFQGFLCGLVSAMDSLD
# IKSSSTFIESTICNLKMKPCIETCANLLYSILHLLFLEGDQCPQGLSSTHTTIETECCNELLAAGTYQSRDSADEANNVNKEEHYSGSADSLQSNDSK
# NDLQKFGGIESLLANVDFEQQYLRKSLLQALSIGENLEAAFCLKHIFGASSAILKFSLHTKSTSLPKNLLPLLIRVSHVLLSDFANHSGSLEQFSFIW
# LDGVAKFIGELGKVFPLLNPLSSRDLFVKHIELHLRAMGKCISLQGKEATLASREIESSTKMLSGLPEHDLSNSHWLNHLDELKSRLRMSFANFVSRA
# SELHLLSAIQAIERALVGVQEHCIINYEITTGSSHGAQVSAYVAAGIDCLDLILESVSGRKKVAVIKRHIQNLVSSLLNVILHLQGPKMFFRNHKFRK
# DFAEPDPGSVCLMCISVLTKISAKHAFFQLEACHIGQLLHLPATVFQCAFQLWTSKVLLCSNYTGGSTFEETEVPGSERSVVDREFCIKLYAACCRML
# CTVLKHHRSETRRCIALLEDSVGRLLNCLEMVCTSPVGGDYFGWEVQVGVKCASFLRRVYEEIRQHKDVYGNNCFQFLSCYIWVYCGYGRLRNGIIRE
# IDEALRPGVYALVDACSEDDLQRLHTVFGEGPCRNTLATLQHDYKIHFQYGGKV]
# end gene g8
###
# start gene g9
C10HBa0053L19.1	AUGUSTUS_ab_initio	gene	119737	125450	0.14	-	.	ID=g9
C10HBa0053L19.1	AUGUSTUS_ab_initio	transcript	119737	125450	0.14	-	.	ID=g9.t1;Parent=g9
C10HBa0053L19.1	AUGUSTUS_ab_initio	stop_codon	119737	119739	.	-	0	Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	119794	120640	0.75	-	.	Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	120724	121188	0.58	-	.	Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	121363	121609	0.99	-	.	Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	121743	121906	0.73	-	.	Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	121992	123488	0.49	-	.	Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	123642	124548	0.57	-	.	Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	124740	124870	1	-	.	Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	124898	125264	0.99	-	.	Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	119737	119793	0.76	-	0	ID=g9.t1.cds;Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	120641	120723	0.66	-	2	ID=g9.t1.cds;Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	121189	121362	0.88	-	2	ID=g9.t1.cds;Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	121610	121742	0.99	-	0	ID=g9.t1.cds;Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	121907	121991	0.6	-	1	ID=g9.t1.cds;Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	123489	123641	0.36	-	1	ID=g9.t1.cds;Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	124549	124739	0.97	-	0	ID=g9.t1.cds;Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	124871	124897	1	-	0	ID=g9.t1.cds;Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	125265	125450	1	-	0	ID=g9.t1.cds;Parent=g9.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	start_codon	125448	125450	.	-	0	Parent=g9.t1
# protein sequence = [MATSLASQLSGPKSAIAFSTPPHFSGLRPSSNFKLDNTRSFFQNVDSHKGCRPVVSMAGSGKFFVGGNWKCNGTKDSI
# SKLVSDLNSAKLESDVGEFFNIAHFLLPQAVYAYPAFYEAVSMTFYPIQILIAEQSLIICSTWILADVVVAPPFMYIDQVKSSLTDRIEISGQNCWTG
# KGGAFTGEISVEQLKDIGCKWVILGHSERRHVIGENDEFIGKKAAYALSQNVGVIACIGELLEEREAGKTFDVCFNQLKAFADALPSWDDVVIAYEPV
# WAIGTGKVASPEQAQEVHAAVRDWLSKNVSAEVASKTRIIYGGSVNGGNSSDLAKKEDIDGFLVGGASLKGPEFATIINSVTSKKVAA]
# end gene g9
###
# start gene g10
C10HBa0053L19.1	AUGUSTUS_ab_initio	gene	128740	132925	0.2	+	.	ID=g10
C10HBa0053L19.1	AUGUSTUS_ab_initio	transcript	128740	132925	0.2	+	.	ID=g10.t1;Parent=g10
C10HBa0053L19.1	AUGUSTUS_ab_initio	start_codon	128740	128742	.	+	0	Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	128834	129544	0.31	+	.	Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	129710	130060	0.84	+	.	Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	130112	130200	0.91	+	.	Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	130290	131851	0.94	+	.	Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	131930	132057	0.99	+	.	Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	132262	132670	0.97	+	.	Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	intron	132749	132874	0.98	+	.	Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	128740	128833	0.31	+	0	ID=g10.t1.cds;Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	129545	129709	0.48	+	2	ID=g10.t1.cds;Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	130061	130111	0.94	+	2	ID=g10.t1.cds;Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	130201	130289	0.95	+	2	ID=g10.t1.cds;Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	131852	131929	0.99	+	0	ID=g10.t1.cds;Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	132058	132261	1	+	0	ID=g10.t1.cds;Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	132671	132748	0.99	+	0	ID=g10.t1.cds;Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	CDS	132875	132925	0.98	+	0	ID=g10.t1.cds;Parent=g10.t1
C10HBa0053L19.1	AUGUSTUS_ab_initio	stop_codon	132923	132925	.	+	0	Parent=g10.t1
# protein sequence = [MSIRVFSVSSLSSSSLHHSFKVSFLRSRSLLFARCQSDPETDVVEGTGEAGDLGIVDEDVRDFGSDSFSPAPGIETVC
# VFPKNPSKVVAAGEESELLVGMKNDGDSSLNIIAIQASVHLPFDHRYLVQNLSVQAFNNATVPPSAQATFPYIFAVSKFMQPGSFDLVGIIVYEIDQN
# PFQSTFYNGTIEVTEPGGLLSVESVFLFCLGIALLALLGFWIRGQIQNLSKKTKRAPKAKVEVGTATTDASTDEWLEGTAYSQSLSNKSKKKK]
# end gene g10
###
# command line:
# /usr/bin/augustus.real --species=tomato --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C10HBa0053L19-iysm0/AUGUSTUS_ab_initio/seq_with_defline_removed