<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 23:25:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316038" ref_strand="+" ref_description="SGN-E316038 [cTOA-23-I4]">
      <seq>aaaaacatctctttcttattgagccttgaagcccttcttgaaatctctttgaatttttcaaatacaatcaaaatggtgagttaactttcaaccccttttgcttttctttgcattttaaatttacttttgattacttcttgttttgttaattcttgatgtgtgtgtgttttagtatggagattttgtgaatgggtttagtttttgattgatctgattagttaatctatgtgggttttggttaaaatagtgatctttatgggaatttcactgttggttgtcttcttgttttgctttgtttttcctgctgtgtgtgtgtgtgttagtagagagattttgcgaatgggtttagtgtttgcttgatctgattggataatctatatgggtattggctaaaaaactgatctttatgggaattttactgtagggtgtcttcttgttttgctttgtttttcctgttgtgtgtgtgtgtgttaataaagagattttgtgagtgggtttagtgtttgattgaatctgattagataatctatatgagtgttggctaaaaaagtgatctttatggaatttacactgttgatttcttcttgttttgctttgtgtttcttagagtgtgtgttagtaaagcattttgtgaatgggtttagttgtttatttgtgattgtgattgatatgataagatatctacatgggtattggctaaaactgatctctattgaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="1943" stop="619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1643" g_stop="923" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E316038" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1643" e_stop="923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATCTCTTTCTTATTGAGCCTTGAAGCCCTTCTTGAAATCTCTTTGAATTTTTCAAATACAATCAAAATGGTGAGTTAACTTTCAACCCCTTTTGCTTTTCTTTGCATTTTAAATTTACTTTTGATTACTTCTTGTTTTGTTAATTCTTGATGTGTGTGTGTTTTAGTATGGAGATTTTGTGAATGGGTTTAGTTTTTGATTGATCTGATTAGTTAATCTATGTGGGTTTTGGTTAAAATAGTGATCTTTATGGGAATTTCACTGTTGGTTGTCTTCTTGTTTTGCTTTGTTTTTCCTGCTGTGTGTGTGTGTGTTAGTAGAGAGATTTTGCGAATGGGTTTAGTGTTTGCTTGATCTGATTGGATAATCTATATGGGTATTGGCTAAAAAACTGATCTTTATGGGAATTTTACTGTAGGTTGTCTTCTTGTTTTGCTTTGTTTTTCCTGTTGTGTGTGTGTGTGTTAGTAGAGAGATTTTGTGAGTGGGTTTAGTGTTTGATTGAATCTGATTAGATAATCTATATGAGTGTTGGCTAAAAAAGTGATCTTTATGGAATTTACACTGTTGATTTCTTCTTGTTTTGCTTTGTTTTTCTTAGTGTGTGTGTTAGTAAAAGCATTTTGTGAATGGGTTTAGTTGTTTATTTGTGATTGTGATTGATATGATAAGATTATCTACATGGGTATTGGCTAAAAACTGATCTCTATTGAAA</genome_strand>
        <mrna_strand>AAAAACATCTCTTTCTTATTGAGCCTTGAAGCCCTTCTTGAAATCTCTTTGAATTTTTCAAATACAATCAAAATGGTGAGTTAACTTTCAACCCCTTTTGCTTTTCTTTGCATTTTAAATTTACTTTTGATTACTTCTTGTTTTGTTAATTCTTGATGTGTGTGTGTTTTAGTATGGAGATTTTGTGAATGGGTTTAGTTTTTGATTGATCTGATTAGTTAATCTATGTGGGTTTTGGTTAAAATAGTGATCTTTATGGGAATTTCACTGTTGGTTGTCTTCTTGTTTTGCTTTGTTTTTCCTGCTGTGTGTGTGTGTGTTAGTAGAGAGATTTTGCGAATGGGTTTAGTGTTTGCTTGATCTGATTGGATAATCTATATGGGTATTGGCTAAAAAACTGATCTTTATGGGAATTTTACTGTAGGGTGTCTTCTTGTTTTGCTTTGTTTTTCCTGTTGTGTGTGTGTGTGTTAATAAAGAGATTTTGTGAGTGGGTTTAGTGTTTGATTGAATCTGATTAGATAATCTATATGAGTGTTGGCTAAAAAAGTGATCTTTATGGAATTTACACTGTTGATTTCTTCTTGTTTTGCTTTGTGTTTCTTAGAGTGTGTGTTAGT-AAAGCATTTTGTGAATGGGTTTAGTTGTTTATTTGTGATTGTGATTGATATGATAAGA-TATCTACATGGGTATTGGCT-AAAACTGATCTCTATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263107" ref_strand="+" ref_description="SGN-E263107 [cLEG-59-N14]">
      <seq>aaatcgaaaaaatgtcttcagaaagggcaaatcgccatcaaaggaggccatctcagagcttcaattttgttttgccggagaacatttcgttagctgatccagtggacggcgattccgacaatggcgccggtgccggcgagcaaaataaggttgttacgccgccgcctgcaaattcgaaatctggactcggccgtactgctagcggagtttcattgccgccgctgccggtggagatgtcgtcggagaaggagggaacgtcacgacgtcaaggatgaacctaagaaattttttttatgaagttgatttttttttagttaattactttgttttttttgttttttttgctttgtgatcagttgataatctacctgaatcttttttattaattttaattaataaaaaagtactttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="+" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="11595" stop="12607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11895" g_stop="12307" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="+" ref_id="SGN-E263107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11895" e_stop="12307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCGAAAAAATGTCTTCAGAAAGGGCAAATCGCCATCAAAGGAGGCCATCTCAGAGCTTCAATTTTGTTTTGCCGGAGAACATTTCGTTAGCTGATCCAGTGGACGGCGATTCCGACAATGGCGCCGGTGCCGGCGAGCAAAATAAGGTTGTTACGCCGCCGCCTGCAAATTCGAAATCTGGACTCGGCCGTACTGCTAGCGGAGTTTCATTGCCGCCGCTGCCGGTGGAGATGTCGTCGGAGAAGGAGGGAACGTCACGACGTCAAGGATGAACCTAAGAAATTTTTTTTATGAAGTTGATTTTTTTTTAGTTAATTACTTTGTTTTTTTTGTTTTTTTTGCTTTGTGATCAGTTGATAATCTACCTGAATCTTTTTTATTAATTTTAATTAATAAAAAAGTACTTTTTT</genome_strand>
        <mrna_strand>AAATCGAAAAAATGTCTTCAGAAAGGGCAAATCGCCATCAAAGGAGGCCATCTCAGAGCTTCAATTTTGTTTTGCCGGAGAACATTTCGTTAGCTGATCCAGTGGACGGCGATTCCGACAATGGCGCCGGTGCCGGCGAGCAAAATAAGGTTGTTACGCCGCCGCCTGCAAATTCGAAATCTGGACTCGGCCGTACTGCTAGCGGAGTTTCATTGCCGCCGCTGCCGGTGGAGATGTCGTCGGAGAAGGAGGGAACGTCACGACGTCAAGGATGAACCTAAGAAATTTTTTTTATGAAGTTGATTTTTTTTTAGTTAATTACTTTGTTTTTTTTGTTTTTTTTGCTTTGTGATCAGTTGATAATCTACCTGAATCTTTTTTATTAATTTTAATTAATAAAAAAGTACTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370047" ref_strand="+" ref_description="SGN-E370047 [TUS-26-J18]">
      <seq>aaatcgaaaaaatgtcttcagaaagggcaaatcgccatcaaaggaggccatctcagagcttcaattttgttttgccggagaacatttcgttagctgatccagtggacggcgattccgacaatggcgccggtgccggcgagcaaaataaggttgttacgccgccgcctgcaaattcgaaatctggactcggccgtactgctagcggagtttcattgccgccgctgccggtggagatgtcgtcggagaaggagggaacgtcacgacgtcaaggatgaacctaagaaattttttttatgaagatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="+" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="11595" stop="12500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11895" g_stop="12200" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="+" ref_id="SGN-E370047" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11895" e_stop="12200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCGAAAAAATGTCTTCAGAAAGGGCAAATCGCCATCAAAGGAGGCCATCTCAGAGCTTCAATTTTGTTTTGCCGGAGAACATTTCGTTAGCTGATCCAGTGGACGGCGATTCCGACAATGGCGCCGGTGCCGGCGAGCAAAATAAGGTTGTTACGCCGCCGCCTGCAAATTCGAAATCTGGACTCGGCCGTACTGCTAGCGGAGTTTCATTGCCGCCGCTGCCGGTGGAGATGTCGTCGGAGAAGGAGGGAACGTCACGACGTCAAGGATGAACCTAAGAAATTTTTTTTATGAAGTTGATTT</genome_strand>
        <mrna_strand>AAATCGAAAAAATGTCTTCAGAAAGGGCAAATCGCCATCAAAGGAGGCCATCTCAGAGCTTCAATTTTGTTTTGCCGGAGAACATTTCGTTAGCTGATCCAGTGGACGGCGATTCCGACAATGGCGCCGGTGCCGGCGAGCAAAATAAGGTTGTTACGCCGCCGCCTGCAAATTCGAAATCTGGACTCGGCCGTACTGCTAGCGGAGTTTCATTGCCGCCGCTGCCGGTGGAGATGTCGTCGGAGAAGGAGGGAACGTCACGACGTCAAGGATGAACCTAAGAAATTTTTTTTATGAAGATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623491" ref_strand="+" ref_description="SGN-E623491 [88584]">
      <seq>gtaattgaacaatttttttctctttattttgttttttcagtgttaataatttcacagatttatgttcaacttatgcacagatttgagttcaaaattctttagctgacccacccaaacaatgcctctatctgttcctcacttcatctctgtcagcagattttcagacctcaatggtgtaaaggtacgtggttcgccaaggtgttttcagagagattgtaaagtatttacagttatatcaatgtcaaaagaggcatcaaattatataccagcagctcctatatttctccctgaaggaccatggcaacagattcctggtggtgttactgctgcaaagggtttcaaagctgctgggatgtatggtggattacgtgctcttggagagaaacctgatctcgcactcgtcacttgtgatgtagatgccatatctgcaggggcatttactacaaatgttgttgcagctgcacctgtactatactgtaaaagcgcactaaatgcatctaaaacggctcgtgcggtattaataaatgctggtcaagctaatgcagcaacgggtgatgcaggttatcaacgatgtaatagagtgctcaagtgcacctagctaagttacttcaactgaagcaagacgaagtcttgatcgaaatcaactggtgtaataggtcaaagaataaagaagggaagcactttctcaactcaactcccacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="+" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="16122" stop="19697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16422" g_stop="16608" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16609" i_stop="17085" i_length="477">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17086" g_stop="17211" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="307" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17212" i_stop="18021" i_length="810">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18022" g_stop="18145" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="431" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18146" i_stop="18407" i_length="262">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18408" g_stop="18481" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="505" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18482" i_stop="18958" i_length="477">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18959" g_stop="19003" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="550" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19004" i_stop="19202" i_length="199">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19203" g_stop="19253" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="603" r_length="53" r_score="0.882"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19254" i_stop="19324" i_length="71">
            <donor d_prob="0.917" d_score="0.88"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19325" g_stop="19393" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="673" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19394" i_stop="19586" i_length="193">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.853" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19587" g_stop="19614" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="704" r_length="31" r_score="0.786"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="+" ref_id="SGN-E623491" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16422" e_stop="16608"/>
          <exon e_start="17086" e_stop="17211"/>
          <exon e_start="18022" e_stop="18145"/>
          <exon e_start="18408" e_stop="18481"/>
          <exon e_start="18959" e_stop="19003"/>
          <exon e_start="19203" e_stop="19253"/>
          <exon e_start="19325" e_stop="19393"/>
          <exon e_start="19587" e_stop="19614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTGAACAATTTTTTTTTCCTCTTTATTTTGTTTTTTTCAGTGTTAATAATTTCACAGATTTATGTTCAATTTATGCACAAAGATTTGAGTTCAAAACTCTTTAGCTGACCAACTCAAACAATGGCTCTTTCTGTTCCTCACTTCATCTCTGTCAGCAGATTTTCAGACCTCAATGGTGTAAAGGTTAGTTTTTTATGTCACCCTTTAATGTTCTTATTGATTACCCATAAAAATTTCTGCAGAAATGAGTTTGAGATATGGTAGTTTCAGTTGAACTCTTACTGCTTATCTAAGAATCAAGAATCTTGATTTTTATTGTAAAAATTGTCCCTTTATTTTGTTAGTGTATTTGATTTGTGTAATAGCTTGTTGGTGGTCAAATTACTTGCATTTTGTGTGTTGGTGTCTAGGTTAGCTTGTGCACATTTCGATTAAATCCATAGGATGCCAGTTACCTCTCAGGTCCCGAGGCTAGGACAGATGAAAAGAAATTAGCTAGTGTATTTTTATTTTGTCTCTATTGAGGTTTGAATGTGAGACTTGACAGTTCTCAGTTCACTTCATTGACTATTAAGCTACACCTTAGGTGTAAAAAAGGGTTCTTTTTCTGTGATGTTTTCAGTATACAGTAGGTAAAAAGTGTGAAATTTTAAGCTGCAGGTACGTGGTTCGCCAAGGTGTTTTCGGAGAGATTGTAAAGTATTTACAGTTATATCAATGTCAAAAGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAGGTGAGGGGCTTCTCTCTTCTCTTTATATGTTTCTTGTTTCAATCAATCAACTACACCTCAATGCAAACTAGTTGTCGTACTGATTCAAATATATGTGCCACTCTATTCGGACCAACTTTGTTTAAATACTAACTTAAGAGGTATATGCAGCTAGACGTTTATGTAAATACCACACTTTTTTTATATTTACGATGGTGGTTCATGGCCAGCTTGCACGAAAGAGAAGTCTAAATATTACATTATAACTTTACTAACATATTTATAATGTTATCAAGTATCGTAATCTCTTTGATTGGTGCTACCGTTTTATCTACTGAGATTGAGACATAGCTTTCTGTGCGTCTGTGATATAATGTACTGTGAAACAGGTGAATTCCTAATTAATGCTAGAAAATGATGAATCAAAGCAAATATAGCCATTCTAAGCTACTCTAATAGACATTTTACAGCTGCTACAATATTTTTAGCTAGAGACATGATAGAAAATTGGGGAATGGGTCAACATTCTAAAAGTAATACTAGCATAATTATGCCAGACCATCATTTCAGGAGAAAGCAAACAAAGATCTATTGTAAGCTTAAGCTCATCGAATTTGTTAAATTATATATCTATATCAGTATGTATGTATGTTGCTAGTATGGTTCTTGATAAAGCTTATGCAAACAGGGATAATAGTCTTTTTTTCCTGAACCTCGTTGCTTCTGTTTCCTCCACTTGTTCGATATTAGTTTTCTAGTTGGACGGGTGATGATTCAGGATCAATATGATATAATTGTCTGTAGACAACTTAGACTGCTTCAAATGTGTAGATTCCTGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAGGTCAGCTACCCTAATATAGTCCTAGGTCATCAGTGTTGAGCTTTTCGTAGGTTCATGAGTGAAAAACTATACTGTTGCTTTTTAAAATTCTTACCTCCTTTCCCCCACCCACCCCTTCCCTGGGAGAGAAAAGAAACATACAGCTTTCTTGAAATGAAAAAAGGAACACATTTGTTTGGCGGTTGTGTTAAAACTTACCATCTACAATCAACCAATAGAAACCGATGAATCAGGAATCACCATTTTCTTGTTTTTAATCCAGGGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACGGTATGCAGGAGACTTTGTACTTACTGTTTTGTCTTTCACTTGAGGTGAAAGAACTTTTTGTCACCTTTAGAACTGCCAACTCTCAACTTTAATGTGCTATTGTAGTTCTGTACTCTGCATACTGTTTGCTTGTCCTATATTGACTTAAGAAATGACGTGATACAAAAAGAAGAAAAGTCGTTCTAATTGGTTACTATTGAGCCGAAAAAAGTTTTCAATTAAGCTATTGTGCTATCTTATTGGTCTCTTTCACAAGTTTAAGCCGATGCTTTTGTATTCTTATGATTTATTAGATAAAAGGATGCATCTCCATTTATATTTAGGAATGAATCCAGACTTTCATGAATTTTTACTATTTTGTGAATCCAAGAAGCATATTAGAAGTATATATTAGTAACCTGATGTCATGGATTGGTTGCAGCGAACTTGACTGCTTTTGAAATCCTGTTTTCTTATAAGAATACTACCACTTTTCAGGCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACGGTAATTTCTCCTGAATGTTTTAATTGGAAGCTCAATTTAAAGCAGGGTGTATCTCCTCCTCTAGTTTCAATTTGATTGGCAGTAAAAGCAAATCCAGACTCATCCAACTTCACAGCGAAGTTATAGGCTTTGTTATGATGTCATATCACTTTTCTGCGTTTGAAAATGTGACTTGAGATTTTCAAAATTTCTGTTTCAGGGTGATGCAGGTTATCAA-GATGTAATTGAGTGCTCAAGTTCA-CTAGCTAAGGTTTGCAGTTTGTCCATTTTGGTTTAGACTTTAGATATTTGGTTTCTGATATTAATTTTCAATTGTAATAGTTACTTCAACTGAAGCAAGACGAAGTCTTGATCG-AATCAACTGGTGTAATTGGTCAAAGAATAAAGAAGGTAAATGCTTACATGTTGCACTTAATTGACTTTTCCTAATTCCTTGAACCTCTTTCTTGCATATAACAATACCCCAATGTTGGATGCCTTGAATTTACATTTCTTTGGCATATTCGTTATTTTGTGTATGATTTTACTGTACGAGTTTTTTCTCTGACCAGTAACCCCGTTTTTATGCTTACATCACTTGCAG-GAAGCAC-TTCTCAACTC-ACTCCCACATC</genome_strand>
        <mrna_strand>GTAATTGAACAA--TTTTTTT-CTCTTTATTTTG-TTTTTTCAGTGTTAATAATTTCACAGATTTATGTTCAACTTATGCAC--AGATTTGAGTTCAAAATTCTTTAGCTGACCCACCCAAACAATGCCTCTATCTGTTCCTCACTTCATCTCTGTCAGCAGATTTTCAGACCTCAATGGTGTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGGTTCGCCAAGGTGTTTTCAGAGAGATTGTAAAGTATTTACAGTTATATCAATGTCAAAAGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTACGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAG......................................................................................................................................................................................................................................................................GGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACG.......................................................................................................................................................................................................GGTGATGCAGGTTATCAACGATGTAATAGAGTGCTCAAGTGCACCTAGCTAAG.......................................................................TTACTTCAACTGAAGCAAGACGAAGTCTTGATCGAAATCAACTGGTGTAATAGGTCAAAGAATAAAGAAG.................................................................................................................................................................................................GGAAGCACTTTCTCAACTCAACTCCCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460129" ref_strand="+" ref_description="SGN-E460129 [cPRO-30-C15]">
      <seq>gttaataatttcacagatttatgttcaatttatgcacaaagatttgagttcaaaactctttagctgacccatcaaacaatgcctctatctgttcctcacttcatctctgtcagcagattttcagacctcaatggtgtaaaggtacgaggtttgccaaggtgttttcagagagactgtaaagtatttacagttatatcaatgtcaaaagaggcatcaaattatataccagcagctcctatatttctccctgaaggaccatggcaacagattccaggtggtgttactgctgcaaagggtttcaaagctgctgggatgtatggtggattgcgtgctcttggagagaaacctgatctcgcactcgtcacttgtgatgtagatgccatatctgcaggggcatttactacaaatgttgttgcagctgcacctgtactatactgtaaaagcgcactaaatgcatctaaaacggctcgtgcggtattaataaatgctggtcaagctaatgcagcaacgggtgatgcaggttatcaggatgtaatagagtgctcaagtgcactagctaagttacttcaactgaagcaagacgaagtcttgatcgaaatcactggtgntatangtcaaagaataagaagggagcacttctcaactcactcccacatcttgttaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="+" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="16167" stop="19925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16467" g_stop="16608" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16609" i_stop="17085" i_length="477">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17086" g_stop="17211" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="267" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17212" i_stop="18021" i_length="810">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18022" g_stop="18145" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="391" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18146" i_stop="18407" i_length="262">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18408" g_stop="18481" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="465" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18482" i_stop="18958" i_length="477">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18959" g_stop="19003" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="510" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19004" i_stop="19202" i_length="199">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19203" g_stop="19253" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="561" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19254" i_stop="19324" i_length="71">
            <donor d_prob="0.917" d_score="0.94"/>
            <acceptor a_prob="0.955" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19325" g_stop="19393" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="629" r_length="68" r_score="0.884"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19394" i_stop="19586" i_length="193">
            <donor d_prob="0.970" d_score="0.84"/>
            <acceptor a_prob="0.853" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19587" g_stop="19625" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="668" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="+" ref_id="SGN-E460129" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16467" e_stop="16608"/>
          <exon e_start="17086" e_stop="17211"/>
          <exon e_start="18022" e_stop="18145"/>
          <exon e_start="18408" e_stop="18481"/>
          <exon e_start="18959" e_stop="19003"/>
          <exon e_start="19203" e_stop="19253"/>
          <exon e_start="19325" e_stop="19393"/>
          <exon e_start="19587" e_stop="19625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATAATTTCACAGATTTATGTTCAATTTATGCACAAAGATTTGAGTTCAAAACTCTTTAGCTGACCAACTCAAACAATGGCTCTTTCTGTTCCTCACTTCATCTCTGTCAGCAGATTTTCAGACCTCAATGGTGTAAAGGTTAGTTTTTTATGTCACCCTTTAATGTTCTTATTGATTACCCATAAAAATTTCTGCAGAAATGAGTTTGAGATATGGTAGTTTCAGTTGAACTCTTACTGCTTATCTAAGAATCAAGAATCTTGATTTTTATTGTAAAAATTGTCCCTTTATTTTGTTAGTGTATTTGATTTGTGTAATAGCTTGTTGGTGGTCAAATTACTTGCATTTTGTGTGTTGGTGTCTAGGTTAGCTTGTGCACATTTCGATTAAATCCATAGGATGCCAGTTACCTCTCAGGTCCCGAGGCTAGGACAGATGAAAAGAAATTAGCTAGTGTATTTTTATTTTGTCTCTATTGAGGTTTGAATGTGAGACTTGACAGTTCTCAGTTCACTTCATTGACTATTAAGCTACACCTTAGGTGTAAAAAAGGGTTCTTTTTCTGTGATGTTTTCAGTATACAGTAGGTAAAAAGTGTGAAATTTTAAGCTGCAGGTACGTGGTTCGCCAAGGTGTTTTCGGAGAGATTGTAAAGTATTTACAGTTATATCAATGTCAAAAGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAGGTGAGGGGCTTCTCTCTTCTCTTTATATGTTTCTTGTTTCAATCAATCAACTACACCTCAATGCAAACTAGTTGTCGTACTGATTCAAATATATGTGCCACTCTATTCGGACCAACTTTGTTTAAATACTAACTTAAGAGGTATATGCAGCTAGACGTTTATGTAAATACCACACTTTTTTTATATTTACGATGGTGGTTCATGGCCAGCTTGCACGAAAGAGAAGTCTAAATATTACATTATAACTTTACTAACATATTTATAATGTTATCAAGTATCGTAATCTCTTTGATTGGTGCTACCGTTTTATCTACTGAGATTGAGACATAGCTTTCTGTGCGTCTGTGATATAATGTACTGTGAAACAGGTGAATTCCTAATTAATGCTAGAAAATGATGAATCAAAGCAAATATAGCCATTCTAAGCTACTCTAATAGACATTTTACAGCTGCTACAATATTTTTAGCTAGAGACATGATAGAAAATTGGGGAATGGGTCAACATTCTAAAAGTAATACTAGCATAATTATGCCAGACCATCATTTCAGGAGAAAGCAAACAAAGATCTATTGTAAGCTTAAGCTCATCGAATTTGTTAAATTATATATCTATATCAGTATGTATGTATGTTGCTAGTATGGTTCTTGATAAAGCTTATGCAAACAGGGATAATAGTCTTTTTTTCCTGAACCTCGTTGCTTCTGTTTCCTCCACTTGTTCGATATTAGTTTTCTAGTTGGACGGGTGATGATTCAGGATCAATATGATATAATTGTCTGTAGACAACTTAGACTGCTTCAAATGTGTAGATTCCTGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAGGTCAGCTACCCTAATATAGTCCTAGGTCATCAGTGTTGAGCTTTTCGTAGGTTCATGAGTGAAAAACTATACTGTTGCTTTTTAAAATTCTTACCTCCTTTCCCCCACCCACCCCTTCCCTGGGAGAGAAAAGAAACATACAGCTTTCTTGAAATGAAAAAAGGAACACATTTGTTTGGCGGTTGTGTTAAAACTTACCATCTACAATCAACCAATAGAAACCGATGAATCAGGAATCACCATTTTCTTGTTTTTAATCCAGGGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACGGTATGCAGGAGACTTTGTACTTACTGTTTTGTCTTTCACTTGAGGTGAAAGAACTTTTTGTCACCTTTAGAACTGCCAACTCTCAACTTTAATGTGCTATTGTAGTTCTGTACTCTGCATACTGTTTGCTTGTCCTATATTGACTTAAGAAATGACGTGATACAAAAAGAAGAAAAGTCGTTCTAATTGGTTACTATTGAGCCGAAAAAAGTTTTCAATTAAGCTATTGTGCTATCTTATTGGTCTCTTTCACAAGTTTAAGCCGATGCTTTTGTATTCTTATGATTTATTAGATAAAAGGATGCATCTCCATTTATATTTAGGAATGAATCCAGACTTTCATGAATTTTTACTATTTTGTGAATCCAAGAAGCATATTAGAAGTATATATTAGTAACCTGATGTCATGGATTGGTTGCAGCGAACTTGACTGCTTTTGAAATCCTGTTTTCTTATAAGAATACTACCACTTTTCAGGCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACGGTAATTTCTCCTGAATGTTTTAATTGGAAGCTCAATTTAAAGCAGGGTGTATCTCCTCCTCTAGTTTCAATTTGATTGGCAGTAAAAGCAAATCCAGACTCATCCAACTTCACAGCGAAGTTATAGGCTTTGTTATGATGTCATATCACTTTTCTGCGTTTGAAAATGTGACTTGAGATTTTCAAAATTTCTGTTTCAGGGTGATGCAGGTTATCAAGATGTAATTGAGTGCTCAAGTTCACTAGCTAAGGTTTGCAGTTTGTCCATTTTGGTTTAGACTTTAGATATTTGGTTTCTGATATTAATTTTCAATTGTAATAGTTACTTCAACTGAAGCAAGACGAAGTCTTGATCGAATCAACTGGTGTAATTGGTCAAAGAATAAAGAAGGTAAATGCTTACATGTTGCACTTAATTGACTTTTCCTAATTCCTTGAACCTCTTTCTTGCATATAACAATACCCCAATGTTGGATGCCTTGAATTTACATTTCTTTGGCATATTCGTTATTTTGTGTATGATTTTACTGTACGAGTTTTTTCTCTGACCAGTAACCCCGTTTTTATGCTTACATCACTTGCAGGAAGCACTTCTCAACTCACTCCCACATCTTGTTAAACAG</genome_strand>
        <mrna_strand>GTTAATAATTTCACAGATTTATGTTCAATTTATGCACAAAGATTTGAGTTCAAAACTCTTTAGCTGACCCA-TCAAACAATGCCTCTATCTGTTCCTCACTTCATCTCTGTCAGCAGATTTTCAGACCTCAATGGTGTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGGTTTGCCAAGGTGTTTTCAGAGAGACTGTAAAGTATTTACAGTTATATCAATGTCAAAAGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAG......................................................................................................................................................................................................................................................................GGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACG.......................................................................................................................................................................................................GGTGATGCAGGTTATCAGGATGTAATAGAGTGCTCAAGTGCACTAGCTAAG.......................................................................TTACTTCAACTGAAGCAAGACGAAGTCTTGATCGAAATCACTGGTGNTATANGTCAAAGAAT-AAGAAG.................................................................................................................................................................................................GGAGCACTTCTCAACTCACTCCCACATCTTGTTAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435685" ref_strand="+" ref_description="SGN-E435685 [STM-61-P2]">
      <seq>atttcacagatttatgttcaatttatgcacaaagatttgagttcaaaactctttagctgacccatcaaacaatgcctctatctgttcctcacttcatctctgtcagcagattttcagacctcaatggtgtaaaggtacgaggtttgccaaggtgttttcagagagactgtaaagtatttacagttatatcaatgtcaaaagaggcatcaaattatataccagcagctcctatatttctccctgaaggaccatggcaacagattccaggtggtgttactgctgcaaagggtttcaaagctgctgggatgtatggtggattgcgtgctcttggagagaaacctgatctcgcactcgtcacttgtgatgtagatgccatatctgcaggggcatttactacaaatgttgttgcagctgcacctgtactatactgtaaaagcgcactaaatgcatctaaaacggctcgtgcggtattaataaatgctggtcaagctaatgcagcaacgggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="+" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="16174" stop="19308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16474" g_stop="16608" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16609" i_stop="17085" i_length="477">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17086" g_stop="17211" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="260" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17212" i_stop="18021" i_length="810">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18022" g_stop="18145" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="384" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18146" i_stop="18407" i_length="262">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18408" g_stop="18481" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="458" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18482" i_stop="18958" i_length="477">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18959" g_stop="19003" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="503" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19004" i_stop="19202" i_length="199">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19203" g_stop="19209" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="510" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="+" ref_id="SGN-E435685" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16474" e_stop="16608"/>
          <exon e_start="17086" e_stop="17211"/>
          <exon e_start="18022" e_stop="18145"/>
          <exon e_start="18408" e_stop="18481"/>
          <exon e_start="18959" e_stop="19003"/>
          <exon e_start="19203" e_stop="19209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCACAGATTTATGTTCAATTTATGCACAAAGATTTGAGTTCAAAACTCTTTAGCTGACCAACTCAAACAATGGCTCTTTCTGTTCCTCACTTCATCTCTGTCAGCAGATTTTCAGACCTCAATGGTGTAAAGGTTAGTTTTTTATGTCACCCTTTAATGTTCTTATTGATTACCCATAAAAATTTCTGCAGAAATGAGTTTGAGATATGGTAGTTTCAGTTGAACTCTTACTGCTTATCTAAGAATCAAGAATCTTGATTTTTATTGTAAAAATTGTCCCTTTATTTTGTTAGTGTATTTGATTTGTGTAATAGCTTGTTGGTGGTCAAATTACTTGCATTTTGTGTGTTGGTGTCTAGGTTAGCTTGTGCACATTTCGATTAAATCCATAGGATGCCAGTTACCTCTCAGGTCCCGAGGCTAGGACAGATGAAAAGAAATTAGCTAGTGTATTTTTATTTTGTCTCTATTGAGGTTTGAATGTGAGACTTGACAGTTCTCAGTTCACTTCATTGACTATTAAGCTACACCTTAGGTGTAAAAAAGGGTTCTTTTTCTGTGATGTTTTCAGTATACAGTAGGTAAAAAGTGTGAAATTTTAAGCTGCAGGTACGTGGTTCGCCAAGGTGTTTTCGGAGAGATTGTAAAGTATTTACAGTTATATCAATGTCAAAAGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAGGTGAGGGGCTTCTCTCTTCTCTTTATATGTTTCTTGTTTCAATCAATCAACTACACCTCAATGCAAACTAGTTGTCGTACTGATTCAAATATATGTGCCACTCTATTCGGACCAACTTTGTTTAAATACTAACTTAAGAGGTATATGCAGCTAGACGTTTATGTAAATACCACACTTTTTTTATATTTACGATGGTGGTTCATGGCCAGCTTGCACGAAAGAGAAGTCTAAATATTACATTATAACTTTACTAACATATTTATAATGTTATCAAGTATCGTAATCTCTTTGATTGGTGCTACCGTTTTATCTACTGAGATTGAGACATAGCTTTCTGTGCGTCTGTGATATAATGTACTGTGAAACAGGTGAATTCCTAATTAATGCTAGAAAATGATGAATCAAAGCAAATATAGCCATTCTAAGCTACTCTAATAGACATTTTACAGCTGCTACAATATTTTTAGCTAGAGACATGATAGAAAATTGGGGAATGGGTCAACATTCTAAAAGTAATACTAGCATAATTATGCCAGACCATCATTTCAGGAGAAAGCAAACAAAGATCTATTGTAAGCTTAAGCTCATCGAATTTGTTAAATTATATATCTATATCAGTATGTATGTATGTTGCTAGTATGGTTCTTGATAAAGCTTATGCAAACAGGGATAATAGTCTTTTTTTCCTGAACCTCGTTGCTTCTGTTTCCTCCACTTGTTCGATATTAGTTTTCTAGTTGGACGGGTGATGATTCAGGATCAATATGATATAATTGTCTGTAGACAACTTAGACTGCTTCAAATGTGTAGATTCCTGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAGGTCAGCTACCCTAATATAGTCCTAGGTCATCAGTGTTGAGCTTTTCGTAGGTTCATGAGTGAAAAACTATACTGTTGCTTTTTAAAATTCTTACCTCCTTTCCCCCACCCACCCCTTCCCTGGGAGAGAAAAGAAACATACAGCTTTCTTGAAATGAAAAAAGGAACACATTTGTTTGGCGGTTGTGTTAAAACTTACCATCTACAATCAACCAATAGAAACCGATGAATCAGGAATCACCATTTTCTTGTTTTTAATCCAGGGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACGGTATGCAGGAGACTTTGTACTTACTGTTTTGTCTTTCACTTGAGGTGAAAGAACTTTTTGTCACCTTTAGAACTGCCAACTCTCAACTTTAATGTGCTATTGTAGTTCTGTACTCTGCATACTGTTTGCTTGTCCTATATTGACTTAAGAAATGACGTGATACAAAAAGAAGAAAAGTCGTTCTAATTGGTTACTATTGAGCCGAAAAAAGTTTTCAATTAAGCTATTGTGCTATCTTATTGGTCTCTTTCACAAGTTTAAGCCGATGCTTTTGTATTCTTATGATTTATTAGATAAAAGGATGCATCTCCATTTATATTTAGGAATGAATCCAGACTTTCATGAATTTTTACTATTTTGTGAATCCAAGAAGCATATTAGAAGTATATATTAGTAACCTGATGTCATGGATTGGTTGCAGCGAACTTGACTGCTTTTGAAATCCTGTTTTCTTATAAGAATACTACCACTTTTCAGGCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACGGTAATTTCTCCTGAATGTTTTAATTGGAAGCTCAATTTAAAGCAGGGTGTATCTCCTCCTCTAGTTTCAATTTGATTGGCAGTAAAAGCAAATCCAGACTCATCCAACTTCACAGCGAAGTTATAGGCTTTGTTATGATGTCATATCACTTTTCTGCGTTTGAAAATGTGACTTGAGATTTTCAAAATTTCTGTTTCAGGGTGATG</genome_strand>
        <mrna_strand>ATTTCACAGATTTATGTTCAATTTATGCACAAAGATTTGAGTTCAAAACTCTTTAGCTGACCCA-TCAAACAATGCCTCTATCTGTTCCTCACTTCATCTCTGTCAGCAGATTTTCAGACCTCAATGGTGTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGGTTTGCCAAGGTGTTTTCAGAGAGACTGTAAAGTATTTACAGTTATATCAATGTCAAAAGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAG......................................................................................................................................................................................................................................................................GGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACG.......................................................................................................................................................................................................GGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358799" ref_strand="+" ref_description="SGN-E358799 [cLHT-24-D17]">
      <seq>tcagaactctttagctgaccaactcaaacaatgcctggttctgttcctcacttcatctctgtcagcagattttcagaccttaatggtgtaaagctgcaggtacgtggttcgccaaggtgttttcagagagattgtaaagtatttacagttatatcaatgtcaaaagaggcatcaaattatataccagcagctccaatatttctccctgaaggaccatggcaacagattcctggtggtgttactgctgcaaagggcttcaaagctgctgggatgtatggtggattgcgtgctcttggagagaaacctgatctcgcactcgtcacttgtgatgtagatgccatatctgcaggggcatttactacaaatgttgttgcagctgcacctgtactatactgtaaaagcgcactaaatgcatctaaaacggctcgtgcggtattaataaatgctggtcaagctaatgcagcaacgggtgatgcaggttatcaagatgtaattgagtgctcaagtgcactagctaagttacttcaactgaagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="+" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="16216" stop="19556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16516" g_stop="16608" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16609" i_stop="17079" i_length="471">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17080" g_stop="17211" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="225" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17212" i_stop="18021" i_length="810">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18022" g_stop="18145" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="349" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18146" i_stop="18407" i_length="262">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18408" g_stop="18481" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="423" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18482" i_stop="18958" i_length="477">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18959" g_stop="19003" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="468" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19004" i_stop="19202" i_length="199">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19203" g_stop="19253" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="519" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19254" i_stop="19324" i_length="71">
            <donor d_prob="0.917" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19325" g_stop="19343" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="538" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="+" ref_id="SGN-E358799" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16516" e_stop="16608"/>
          <exon e_start="17080" e_stop="17211"/>
          <exon e_start="18022" e_stop="18145"/>
          <exon e_start="18408" e_stop="18481"/>
          <exon e_start="18959" e_stop="19003"/>
          <exon e_start="19203" e_stop="19253"/>
          <exon e_start="19325" e_stop="19343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACTCTTTAGCTGACCAACTCAAACAATGGCTCTTTCTGTTCCTCACTTCATCTCTGTCAGCAGATTTTCAGACCTCAATGGTGTAAAGGTTAGTTTTTTATGTCACCCTTTAATGTTCTTATTGATTACCCATAAAAATTTCTGCAGAAATGAGTTTGAGATATGGTAGTTTCAGTTGAACTCTTACTGCTTATCTAAGAATCAAGAATCTTGATTTTTATTGTAAAAATTGTCCCTTTATTTTGTTAGTGTATTTGATTTGTGTAATAGCTTGTTGGTGGTCAAATTACTTGCATTTTGTGTGTTGGTGTCTAGGTTAGCTTGTGCACATTTCGATTAAATCCATAGGATGCCAGTTACCTCTCAGGTCCCGAGGCTAGGACAGATGAAAAGAAATTAGCTAGTGTATTTTTATTTTGTCTCTATTGAGGTTTGAATGTGAGACTTGACAGTTCTCAGTTCACTTCATTGACTATTAAGCTACACCTTAGGTGTAAAAAAGGGTTCTTTTTCTGTGATGTTTTCAGTATACAGTAGGTAAAAAGTGTGAAATTTTAAGCTGCAGGTACGTGGTTCGCCAAGGTGTTTTCGGAGAGATTGTAAAGTATTTACAGTTATATCAATGTCAAAAGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAGGTGAGGGGCTTCTCTCTTCTCTTTATATGTTTCTTGTTTCAATCAATCAACTACACCTCAATGCAAACTAGTTGTCGTACTGATTCAAATATATGTGCCACTCTATTCGGACCAACTTTGTTTAAATACTAACTTAAGAGGTATATGCAGCTAGACGTTTATGTAAATACCACACTTTTTTTATATTTACGATGGTGGTTCATGGCCAGCTTGCACGAAAGAGAAGTCTAAATATTACATTATAACTTTACTAACATATTTATAATGTTATCAAGTATCGTAATCTCTTTGATTGGTGCTACCGTTTTATCTACTGAGATTGAGACATAGCTTTCTGTGCGTCTGTGATATAATGTACTGTGAAACAGGTGAATTCCTAATTAATGCTAGAAAATGATGAATCAAAGCAAATATAGCCATTCTAAGCTACTCTAATAGACATTTTACAGCTGCTACAATATTTTTAGCTAGAGACATGATAGAAAATTGGGGAATGGGTCAACATTCTAAAAGTAATACTAGCATAATTATGCCAGACCATCATTTCAGGAGAAAGCAAACAAAGATCTATTGTAAGCTTAAGCTCATCGAATTTGTTAAATTATATATCTATATCAGTATGTATGTATGTTGCTAGTATGGTTCTTGATAAAGCTTATGCAAACAGGGATAATAGTCTTTTTTTCCTGAACCTCGTTGCTTCTGTTTCCTCCACTTGTTCGATATTAGTTTTCTAGTTGGACGGGTGATGATTCAGGATCAATATGATATAATTGTCTGTAGACAACTTAGACTGCTTCAAATGTGTAGATTCCTGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAGGTCAGCTACCCTAATATAGTCCTAGGTCATCAGTGTTGAGCTTTTCGTAGGTTCATGAGTGAAAAACTATACTGTTGCTTTTTAAAATTCTTACCTCCTTTCCCCCACCCACCCCTTCCCTGGGAGAGAAAAGAAACATACAGCTTTCTTGAAATGAAAAAAGGAACACATTTGTTTGGCGGTTGTGTTAAAACTTACCATCTACAATCAACCAATAGAAACCGATGAATCAGGAATCACCATTTTCTTGTTTTTAATCCAGGGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACGGTATGCAGGAGACTTTGTACTTACTGTTTTGTCTTTCACTTGAGGTGAAAGAACTTTTTGTCACCTTTAGAACTGCCAACTCTCAACTTTAATGTGCTATTGTAGTTCTGTACTCTGCATACTGTTTGCTTGTCCTATATTGACTTAAGAAATGACGTGATACAAAAAGAAGAAAAGTCGTTCTAATTGGTTACTATTGAGCCGAAAAAAGTTTTCAATTAAGCTATTGTGCTATCTTATTGGTCTCTTTCACAAGTTTAAGCCGATGCTTTTGTATTCTTATGATTTATTAGATAAAAGGATGCATCTCCATTTATATTTAGGAATGAATCCAGACTTTCATGAATTTTTACTATTTTGTGAATCCAAGAAGCATATTAGAAGTATATATTAGTAACCTGATGTCATGGATTGGTTGCAGCGAACTTGACTGCTTTTGAAATCCTGTTTTCTTATAAGAATACTACCACTTTTCAGGCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACGGTAATTTCTCCTGAATGTTTTAATTGGAAGCTCAATTTAAAGCAGGGTGTATCTCCTCCTCTAGTTTCAATTTGATTGGCAGTAAAAGCAAATCCAGACTCATCCAACTTCACAGCGAAGTTATAGGCTTTGTTATGATGTCATATCACTTTTCTGCGTTTGAAAATGTGACTTGAGATTTTCAAAATTTCTGTTTCAGGGTGATGCAGGTTATCAAGATGTAATTGAGTGCTCAAGTTCACTAGCTAAGGTTTGCAGTTTGTCCATTTTGGTTTAGACTTTAGATATTTGGTTTCTGATATTAATTTTCAATTGTAATAGTTACTTCAACTGAAGCAAG</genome_strand>
        <mrna_strand>TCAGAACTCTTTAGCTGACCAACTCAAACAATGCCTGGTTCTGTTCCTCACTTCATCTCTGTCAGCAGATTTTCAGACCTTAATGGTGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGGTACGTGGTTCGCCAAGGTGTTTTCAGAGAGATTGTAAAGTATTTACAGTTATATCAATGTCAAAAGAGGCATCAAATTATATACCAGCAGCTCCAATATTTCTCCCTGAAGGACCATGGCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGTGGTGTTACTGCTGCAAAGGGCTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAG......................................................................................................................................................................................................................................................................GGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACG.......................................................................................................................................................................................................GGTGATGCAGGTTATCAAGATGTAATTGAGTGCTCAAGTGCACTAGCTAAG.......................................................................TTACTTCAACTGAAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340241" ref_strand="+" ref_description="SGN-E340241 [cTOF-2-N3]">
      <seq>gattttcagacctcaatggtgtaaaggtacgtggttcgccaaggtgttttcggagagattgtaaagtatttacagttatatcaatgtcaaaagaggcatcaaattatataccagcagctcctatatttctccctgaaggaccatggcaacagattcctggtggtgttactgctgcaaagggtttcaaagctgctgggatgtatggtggattgcgtgctcttggagagaaacctgatctcgcactcgtcacttgtgatgtagatgccatatctgcaggggcatttactacaaatgttgttgcagctgcacctgtactatactgtaaaagcgcactaaatgcatctaaaacggctcgtgcggtattaataaatgctggtcaagctaatgcagcaacgggtgatgcaggttatcaagatgtaattgagtgctcaagttcactagctaagttacttcaactgaagcaagacgaagtcttgatcgaatcaactggtgtaattggtcaaagaataaagaaggaagcacttctcaactcactcccacatcttgttaaacagctttcaccaaccgtggagggggcaaattctgcagctgtagctataacgaccactgatcttgttagtaagagtgtggctgttgaaacagaagtaagaggaactcgaatcagagttgggggcatggcaaagggttctgggatgattcatcctaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="+" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="16283" stop="20633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16583" g_stop="16608" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16609" i_stop="17085" i_length="477">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17086" g_stop="17211" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="152" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17212" i_stop="18021" i_length="810">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18022" g_stop="18145" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="276" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18146" i_stop="18407" i_length="262">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18408" g_stop="18481" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="350" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18482" i_stop="18958" i_length="477">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18959" g_stop="19003" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="395" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19004" i_stop="19202" i_length="199">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19203" g_stop="19253" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="446" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19254" i_stop="19324" i_length="71">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19325" g_stop="19393" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="515" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19394" i_stop="19586" i_length="193">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19587" g_stop="19645" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="574" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19646" i_stop="19842" i_length="197">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="19843" g_stop="19912" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="644" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="19913" i_stop="20267" i_length="355">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20268" g_stop="20333" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="710" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="+" ref_id="SGN-E340241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16583" e_stop="16608"/>
          <exon e_start="17086" e_stop="17211"/>
          <exon e_start="18022" e_stop="18145"/>
          <exon e_start="18408" e_stop="18481"/>
          <exon e_start="18959" e_stop="19003"/>
          <exon e_start="19203" e_stop="19253"/>
          <exon e_start="19325" e_stop="19393"/>
          <exon e_start="19587" e_stop="19645"/>
          <exon e_start="19843" e_stop="19912"/>
          <exon e_start="20268" e_stop="20333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCAGACCTCAATGGTGTAAAGGTTAGTTTTTTATGTCACCCTTTAATGTTCTTATTGATTACCCATAAAAATTTCTGCAGAAATGAGTTTGAGATATGGTAGTTTCAGTTGAACTCTTACTGCTTATCTAAGAATCAAGAATCTTGATTTTTATTGTAAAAATTGTCCCTTTATTTTGTTAGTGTATTTGATTTGTGTAATAGCTTGTTGGTGGTCAAATTACTTGCATTTTGTGTGTTGGTGTCTAGGTTAGCTTGTGCACATTTCGATTAAATCCATAGGATGCCAGTTACCTCTCAGGTCCCGAGGCTAGGACAGATGAAAAGAAATTAGCTAGTGTATTTTTATTTTGTCTCTATTGAGGTTTGAATGTGAGACTTGACAGTTCTCAGTTCACTTCATTGACTATTAAGCTACACCTTAGGTGTAAAAAAGGGTTCTTTTTCTGTGATGTTTTCAGTATACAGTAGGTAAAAAGTGTGAAATTTTAAGCTGCAGGTACGTGGTTCGCCAAGGTGTTTTCGGAGAGATTGTAAAGTATTTACAGTTATATCAATGTCAAAAGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAGGTGAGGGGCTTCTCTCTTCTCTTTATATGTTTCTTGTTTCAATCAATCAACTACACCTCAATGCAAACTAGTTGTCGTACTGATTCAAATATATGTGCCACTCTATTCGGACCAACTTTGTTTAAATACTAACTTAAGAGGTATATGCAGCTAGACGTTTATGTAAATACCACACTTTTTTTATATTTACGATGGTGGTTCATGGCCAGCTTGCACGAAAGAGAAGTCTAAATATTACATTATAACTTTACTAACATATTTATAATGTTATCAAGTATCGTAATCTCTTTGATTGGTGCTACCGTTTTATCTACTGAGATTGAGACATAGCTTTCTGTGCGTCTGTGATATAATGTACTGTGAAACAGGTGAATTCCTAATTAATGCTAGAAAATGATGAATCAAAGCAAATATAGCCATTCTAAGCTACTCTAATAGACATTTTACAGCTGCTACAATATTTTTAGCTAGAGACATGATAGAAAATTGGGGAATGGGTCAACATTCTAAAAGTAATACTAGCATAATTATGCCAGACCATCATTTCAGGAGAAAGCAAACAAAGATCTATTGTAAGCTTAAGCTCATCGAATTTGTTAAATTATATATCTATATCAGTATGTATGTATGTTGCTAGTATGGTTCTTGATAAAGCTTATGCAAACAGGGATAATAGTCTTTTTTTCCTGAACCTCGTTGCTTCTGTTTCCTCCACTTGTTCGATATTAGTTTTCTAGTTGGACGGGTGATGATTCAGGATCAATATGATATAATTGTCTGTAGACAACTTAGACTGCTTCAAATGTGTAGATTCCTGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAGGTCAGCTACCCTAATATAGTCCTAGGTCATCAGTGTTGAGCTTTTCGTAGGTTCATGAGTGAAAAACTATACTGTTGCTTTTTAAAATTCTTACCTCCTTTCCCCCACCCACCCCTTCCCTGGGAGAGAAAAGAAACATACAGCTTTCTTGAAATGAAAAAAGGAACACATTTGTTTGGCGGTTGTGTTAAAACTTACCATCTACAATCAACCAATAGAAACCGATGAATCAGGAATCACCATTTTCTTGTTTTTAATCCAGGGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACGGTATGCAGGAGACTTTGTACTTACTGTTTTGTCTTTCACTTGAGGTGAAAGAACTTTTTGTCACCTTTAGAACTGCCAACTCTCAACTTTAATGTGCTATTGTAGTTCTGTACTCTGCATACTGTTTGCTTGTCCTATATTGACTTAAGAAATGACGTGATACAAAAAGAAGAAAAGTCGTTCTAATTGGTTACTATTGAGCCGAAAAAAGTTTTCAATTAAGCTATTGTGCTATCTTATTGGTCTCTTTCACAAGTTTAAGCCGATGCTTTTGTATTCTTATGATTTATTAGATAAAAGGATGCATCTCCATTTATATTTAGGAATGAATCCAGACTTTCATGAATTTTTACTATTTTGTGAATCCAAGAAGCATATTAGAAGTATATATTAGTAACCTGATGTCATGGATTGGTTGCAGCGAACTTGACTGCTTTTGAAATCCTGTTTTCTTATAAGAATACTACCACTTTTCAGGCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACGGTAATTTCTCCTGAATGTTTTAATTGGAAGCTCAATTTAAAGCAGGGTGTATCTCCTCCTCTAGTTTCAATTTGATTGGCAGTAAAAGCAAATCCAGACTCATCCAACTTCACAGCGAAGTTATAGGCTTTGTTATGATGTCATATCACTTTTCTGCGTTTGAAAATGTGACTTGAGATTTTCAAAATTTCTGTTTCAGGGTGATGCAGGTTATCAAGATGTAATTGAGTGCTCAAGTTCACTAGCTAAGGTTTGCAGTTTGTCCATTTTGGTTTAGACTTTAGATATTTGGTTTCTGATATTAATTTTCAATTGTAATAGTTACTTCAACTGAAGCAAGACGAAGTCTTGATCGAATCAACTGGTGTAATTGGTCAAAGAATAAAGAAGGTAAATGCTTACATGTTGCACTTAATTGACTTTTCCTAATTCCTTGAACCTCTTTCTTGCATATAACAATACCCCAATGTTGGATGCCTTGAATTTACATTTCTTTGGCATATTCGTTATTTTGTGTATGATTTTACTGTACGAGTTTTTTCTCTGACCAGTAACCCCGTTTTTATGCTTACATCACTTGCAGGAAGCACTTCTCAACTCACTCCCACATCTTGTTAAACAGCTTTCACCAACCGTGGAGGGGTAATCATCTTTTTCTGATGTAATAATTTATATATTTAATTGGCATTGTCGGATTTTATCCTATATTAATTTTGTATCTTTCTTCCCTTATACTTACCCATTTGTGTTTGTATTCATTTGTTCTAAATAATGAACTCTGATCCACTCTAGATGCTCTGTTCTGGCTAAGGATTGCTGATCTCATATGGCATTTGCAGGGCAAATTCTGCAGCTGTAGCTATAACGACCACTGATCTTGTTAGTAAGAGTGTGGCTGTTGAAACAGAAGTAAGATTAATTTTCCAGCATTTCTGTGTTTGTTTTGATTTAGGTTCTTCAATGCTATTATTCATCACTCTCCCAATTTGTATGACAGTTTGAATCAAGCTATTTGTATTGGGTAGAGTTCTATTAGATGTCATAATTATGGTTTTGAAATAATTATCATGTAGTTTTCTTAATTATTCAAGTTCCATTTTCAAAACTATATGCTTAATCTGGACCAAAGGCACTAACTTAGCACTTAGGTGAAATCAATGTATAGTCGGACTCAAGATCGTCTGTAGTTTGTGTTTCGTTAAGTTCCCATTTCTGAAAGGAAAGAAACTATAATGAATTCTTAATGATATATATGTCTGCTCAGGTAAGAGGAACTCGAATCAGAGTTGGGGGCATGGCAAAGGGTTCTGGGATGATTCATCCTAACATG</genome_strand>
        <mrna_strand>GATTTTCAGACCTCAATGGTGTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGGTTCGCCAAGGTGTTTTCGGAGAGATTGTAAAGTATTTACAGTTATATCAATGTCAAAAGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAG......................................................................................................................................................................................................................................................................GGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACG.......................................................................................................................................................................................................GGTGATGCAGGTTATCAAGATGTAATTGAGTGCTCAAGTTCACTAGCTAAG.......................................................................TTACTTCAACTGAAGCAAGACGAAGTCTTGATCGAATCAACTGGTGTAATTGGTCAAAGAATAAAGAAG.................................................................................................................................................................................................GAAGCACTTCTCAACTCACTCCCACATCTTGTTAAACAGCTTTCACCAACCGTGGAGGG.....................................................................................................................................................................................................GGCAAATTCTGCAGCTGTAGCTATAACGACCACTGATCTTGTTAGTAAGAGTGTGGCTGTTGAAACAGAA...................................................................................................................................................................................................................................................................................................................................................................GTAAGAGGAACTCGAATCAGAGTTGGGGGCATGGCAAAGGGTTCTGGGATGATTCATCCTAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559184" ref_strand="+" ref_description="SGN-E559184 [18641]">
      <seq>gtaaagtatttacagttatatcaatgtcaaagagaggcatcaaattatataccagcagctcctatatttctccctgaaggaccatggcaacagattccaggtggtgttactgctgcaaagggtttcaaagctgctgggatgtatggtggattgcgtgctcttggagagaaacctgatctcgcactcgtcacttgtgatgtagatgccatatctgcaggggcatttactacaaatgttgttgcagctgcacctgtactatactgtaaaagcgcactaaatgcatctaaaacggctcgtgcggtattaataaatgctggtcaagctaatgcagcaacgggtgatgcaggttatcaggatgtaatagagtgctcaagtgcactagctaagttacttcaactgaagcaagacgaagtcttgatcgaatcaactggtgtaataggtcaaagaataaagaaggaagcacttctcaactcactcccacatcttgttaaacagctttcaccaaccgtggagggggcaaattctgcagctgtagctataacgaccactgatcttgttagtaagagtgtggctgttgaaacagaggtaagaggaactcgaatcgagttgggggcatggcaaagggttctgggatgattcatcctaacatggcaacaatgcttggtgtggtaactactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="+" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="16820" stop="20650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17120" g_stop="17211" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17212" i_stop="18021" i_length="810">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18022" g_stop="18145" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="217" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18146" i_stop="18407" i_length="262">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18408" g_stop="18481" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="291" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18482" i_stop="18958" i_length="477">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18959" g_stop="19003" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="336" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19004" i_stop="19202" i_length="199">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19203" g_stop="19253" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="387" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19254" i_stop="19324" i_length="71">
            <donor d_prob="0.917" d_score="0.94"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19325" g_stop="19393" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="456" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19394" i_stop="19586" i_length="193">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19587" g_stop="19645" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="515" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19646" i_stop="19842" i_length="197">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19843" g_stop="19912" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="585" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="19913" i_stop="20267" i_length="355">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20268" g_stop="20348" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="665" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20349" i_stop="20423" i_length="75">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20424" g_stop="20439" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="681" r_length="16" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="+" ref_id="SGN-E559184" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17120" e_stop="17211"/>
          <exon e_start="18022" e_stop="18145"/>
          <exon e_start="18408" e_stop="18481"/>
          <exon e_start="18959" e_stop="19003"/>
          <exon e_start="19203" e_stop="19253"/>
          <exon e_start="19325" e_stop="19393"/>
          <exon e_start="19587" e_stop="19645"/>
          <exon e_start="19843" e_stop="19912"/>
          <exon e_start="20268" e_stop="20348"/>
          <exon e_start="20424" e_stop="20439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGTATTTACAGTTATATCAATGTCAAA-AGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAGGTGAGGGGCTTCTCTCTTCTCTTTATATGTTTCTTGTTTCAATCAATCAACTACACCTCAATGCAAACTAGTTGTCGTACTGATTCAAATATATGTGCCACTCTATTCGGACCAACTTTGTTTAAATACTAACTTAAGAGGTATATGCAGCTAGACGTTTATGTAAATACCACACTTTTTTTATATTTACGATGGTGGTTCATGGCCAGCTTGCACGAAAGAGAAGTCTAAATATTACATTATAACTTTACTAACATATTTATAATGTTATCAAGTATCGTAATCTCTTTGATTGGTGCTACCGTTTTATCTACTGAGATTGAGACATAGCTTTCTGTGCGTCTGTGATATAATGTACTGTGAAACAGGTGAATTCCTAATTAATGCTAGAAAATGATGAATCAAAGCAAATATAGCCATTCTAAGCTACTCTAATAGACATTTTACAGCTGCTACAATATTTTTAGCTAGAGACATGATAGAAAATTGGGGAATGGGTCAACATTCTAAAAGTAATACTAGCATAATTATGCCAGACCATCATTTCAGGAGAAAGCAAACAAAGATCTATTGTAAGCTTAAGCTCATCGAATTTGTTAAATTATATATCTATATCAGTATGTATGTATGTTGCTAGTATGGTTCTTGATAAAGCTTATGCAAACAGGGATAATAGTCTTTTTTTCCTGAACCTCGTTGCTTCTGTTTCCTCCACTTGTTCGATATTAGTTTTCTAGTTGGACGGGTGATGATTCAGGATCAATATGATATAATTGTCTGTAGACAACTTAGACTGCTTCAAATGTGTAGATTCCTGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAGGTCAGCTACCCTAATATAGTCCTAGGTCATCAGTGTTGAGCTTTTCGTAGGTTCATGAGTGAAAAACTATACTGTTGCTTTTTAAAATTCTTACCTCCTTTCCCCCACCCACCCCTTCCCTGGGAGAGAAAAGAAACATACAGCTTTCTTGAAATGAAAAAAGGAACACATTTGTTTGGCGGTTGTGTTAAAACTTACCATCTACAATCAACCAATAGAAACCGATGAATCAGGAATCACCATTTTCTTGTTTTTAATCCAGGGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACGGTATGCAGGAGACTTTGTACTTACTGTTTTGTCTTTCACTTGAGGTGAAAGAACTTTTTGTCACCTTTAGAACTGCCAACTCTCAACTTTAATGTGCTATTGTAGTTCTGTACTCTGCATACTGTTTGCTTGTCCTATATTGACTTAAGAAATGACGTGATACAAAAAGAAGAAAAGTCGTTCTAATTGGTTACTATTGAGCCGAAAAAAGTTTTCAATTAAGCTATTGTGCTATCTTATTGGTCTCTTTCACAAGTTTAAGCCGATGCTTTTGTATTCTTATGATTTATTAGATAAAAGGATGCATCTCCATTTATATTTAGGAATGAATCCAGACTTTCATGAATTTTTACTATTTTGTGAATCCAAGAAGCATATTAGAAGTATATATTAGTAACCTGATGTCATGGATTGGTTGCAGCGAACTTGACTGCTTTTGAAATCCTGTTTTCTTATAAGAATACTACCACTTTTCAGGCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACGGTAATTTCTCCTGAATGTTTTAATTGGAAGCTCAATTTAAAGCAGGGTGTATCTCCTCCTCTAGTTTCAATTTGATTGGCAGTAAAAGCAAATCCAGACTCATCCAACTTCACAGCGAAGTTATAGGCTTTGTTATGATGTCATATCACTTTTCTGCGTTTGAAAATGTGACTTGAGATTTTCAAAATTTCTGTTTCAGGGTGATGCAGGTTATCAAGATGTAATTGAGTGCTCAAGTTCACTAGCTAAGGTTTGCAGTTTGTCCATTTTGGTTTAGACTTTAGATATTTGGTTTCTGATATTAATTTTCAATTGTAATAGTTACTTCAACTGAAGCAAGACGAAGTCTTGATCGAATCAACTGGTGTAATTGGTCAAAGAATAAAGAAGGTAAATGCTTACATGTTGCACTTAATTGACTTTTCCTAATTCCTTGAACCTCTTTCTTGCATATAACAATACCCCAATGTTGGATGCCTTGAATTTACATTTCTTTGGCATATTCGTTATTTTGTGTATGATTTTACTGTACGAGTTTTTTCTCTGACCAGTAACCCCGTTTTTATGCTTACATCACTTGCAGGAAGCACTTCTCAACTCACTCCCACATCTTGTTAAACAGCTTTCACCAACCGTGGAGGGGTAATCATCTTTTTCTGATGTAATAATTTATATATTTAATTGGCATTGTCGGATTTTATCCTATATTAATTTTGTATCTTTCTTCCCTTATACTTACCCATTTGTGTTTGTATTCATTTGTTCTAAATAATGAACTCTGATCCACTCTAGATGCTCTGTTCTGGCTAAGGATTGCTGATCTCATATGGCATTTGCAGGGCAAATTCTGCAGCTGTAGCTATAACGACCACTGATCTTGTTAGTAAGAGTGTGGCTGTTGAAACAGAAGTAAGATTAATTTTCCAGCATTTCTGTGTTTGTTTTGATTTAGGTTCTTCAATGCTATTATTCATCACTCTCCCAATTTGTATGACAGTTTGAATCAAGCTATTTGTATTGGGTAGAGTTCTATTAGATGTCATAATTATGGTTTTGAAATAATTATCATGTAGTTTTCTTAATTATTCAAGTTCCATTTTCAAAACTATATGCTTAATCTGGACCAAAGGCACTAACTTAGCACTTAGGTGAAATCAATGTATAGTCGGACTCAAGATCGTCTGTAGTTTGTGTTTCGTTAAGTTCCCATTTCTGAAAGGAAAGAAACTATAATGAATTCTTAATGATATATATGTCTGCTCAGGTAAGAGGAACTCGAATCAGAGTTGGGGGCATGGCAAAGGGTTCTGGGATGATTCATCCTAACATGGCAACAATGCTTGGTGTAAGTATCTTCAGAATTCCTGCTGTTTCCACTTAAGCAGTGAGAGTAGCTTACTGGATTCGAGCAACTACGCAGGTAGTAACTACAGATG</genome_strand>
        <mrna_strand>GTAAAGTATTTACAGTTATATCAATGTCAAAGAGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAG......................................................................................................................................................................................................................................................................GGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACG.......................................................................................................................................................................................................GGTGATGCAGGTTATCAGGATGTAATAGAGTGCTCAAGTGCACTAGCTAAG.......................................................................TTACTTCAACTGAAGCAAGACGAAGTCTTGATCGAATCAACTGGTGTAATAGGTCAAAGAATAAAGAAG.................................................................................................................................................................................................GAAGCACTTCTCAACTCACTCCCACATCTTGTTAAACAGCTTTCACCAACCGTGGAGGG.....................................................................................................................................................................................................GGCAAATTCTGCAGCTGTAGCTATAACGACCACTGATCTTGTTAGTAAGAGTGTGGCTGTTGAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................GTAAGAGGAACTCGAATC-GAGTTGGGGGCATGGCAAAGGGTTCTGGGATGATTCATCCTAACATGGCAACAATGCTTGGT...........................................................................GTGGTAACTACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465435" ref_strand="+" ref_description="SGN-E465435 [cPRO-21-I7]">
      <seq>caacatgtttgattgaggtgagggttgatggtgctgataatgaagctgaagcagcaaagattgcacgttcagtggcttcctcttcacttgtcaaggctgctgtatacggtagggatccaaattggggccgtattgcttgtgctgctggctatgcaggtatccctttcaacgctgacaagcttcggatatcacttggagatattgtgcttatggaagcaggacaaccacttccatttgatagggttgcagctagcaattatctccgaaaggctggggaagtccatggcactgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="+" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="21524" stop="24187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21824" g_stop="21840" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21841" i_stop="23071" i_length="1231">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23072" g_stop="23149" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="95" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23150" i_stop="23230" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23231" g_stop="23376" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="241" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23377" i_stop="23832" i_length="456">
            <donor d_prob="0.656" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23833" g_stop="23887" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="296" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="+" ref_id="SGN-E465435" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21824" e_stop="21840"/>
          <exon e_start="23072" e_stop="23149"/>
          <exon e_start="23231" e_stop="23376"/>
          <exon e_start="23833" e_stop="23887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATGTTTGATTGAGGTCTGTATTTCTTTATTAAATTCCTTATGAGTTTTGACAAACTTCGATTTGCTCCTAGTCTTGTTTCTTAAACATGCATAAGCTTAGCAACCAACTGTAGAAAAGTAGTTGAAGTTCTCATCTGATATTTACATTTATGCTAATATAATCATAGACGAATACTAGAAAAGAATGATTAAACAGATGGCTGAGTAGCTGAGGTATAGGAGTAAGATTCTAGAAATCCCAGGTTTGGATCCTGACTACAACACATGGTGTGAGCTCATTTTATTCAGCTTTGGTGGACATGTTTACTGGGGATGTGCTTGTGGTTTTTAGCAGTCTGCAGGTGGCAATCAAGGTGCGGTCCAGACAGCATCATAAAAAATAGAGAACGATTGAATGGGTTATCATAGTTGAGCTTGTTAAGGATAAATTTAAAAGAATAATTTGAAGGTATCAAAGATGGAAAAAGATATCTTATCTTGTCTTAGTCATAGAAATAAATACATGTAAAGTCTTGGGTTCATTTCCCAGCACAGGGCACCCAAGGGTTTGGCAACAATGGTCAATGAAGTGAGCTGAGAGCTATGAATCACATGTTCAATTCCTAGTGGAGGCAAAAACATTCGGTGGTTTTTCCCCATATGTCCAAGTCTTAGTGAATAAAGGGACCCGAGTACCTGTGTTAGTAGGAGTTGGGAGGTAACAAGTACCCCGTTGAATTAGTTGATGGTGCGCATGGTTCTACATTTGACTAATATAAGTAGAAGGTCATAAAAGAATTTGCATTATCTTATGTTGATACCAATACTGGGAGATGGTAGCTTTGCTATATATAAGGAAAGAAATCAAGCTATGGTGGAGTGCTCGATCTCAATGCAGGTTATGGTAGGTGAAGGTTCTGGTGTTTTAAATAGGATAAACAGAATATTAATTCTTTTTTCTTTTTCTTTTTTGGGTCGACACTAGATTTAAATTCCTTCGTTACTTGGCATGATTAAGGACAACATCTAAGTGGAGAAGGGTAAAAGTACAGGGTCCATTATCCATCGAGTTTCAAACTGCATGCCACTCGCCCTCAAGGATTTCTCGGTTATCAAAAAGAAGGGAACAATCATGTATTCAGTTGAAAAAATGTTTAAAATGTGGCTTCTTAAACTTCCAGTTCATTCATGAGCATATATACACAACAGCTTGTAGAATCTCTTTTTTTATTTTTAAAGTTTTGCTCGTCTCTAATTGGACATAGGTGAGGGTTGATGGTGCTGATAACGAAGCTGAAGCAGCAAAGATTGCACGTTCAGTGGCTTCCTCTTCACTTGTCAAGGTATGAAATGAATTACTTTGCATATCTACTTGGAGCTACCTAGAAAGTACATTTTACTGATAGTTTCCTTTCTATAATCAGGCTGCTGTATACGGTAGGGATCCAAATTGGGGCCGTATTGCTTGTGCTGCTGGCTATGCAGGTATCCCTTTCAACGCCGACAAGCTTCGGATATCTCTTGGAGATATTGTTCTTATGGAAGCAGGGCAACCACTTCCATTTGATAGGTATGGAGAACAATACCCCCCCCCCCCCTCCGTTTGTATTGCATTCTTCGGCATGTGCCCTGAAATCGCCTTCTAGTGTCAGTTCCTGTCTCTAGAGAGAACTATAACGCTTCTTGAACAGATGCCTAACCAACTCATTTTGGTTAAGTTTGATGCTACTCTGATATTCTGATCAATACATAAACCAATTCCTTTCGCTCTTGAATGTTTAATTTTCCTGGTGAGGCCTTAGCCATTATAGAGCGTAAAATAGTTCTTTTGTCTCGGATTATATCTCAACCTCAAAATAGTGGTTCTTGCTCGAGTATTCAGTAGGATGCTAGACCTAAAGTACATACCACCTCATTTATATTGCTCTATACGCTTTACCACGTGATGCTCTTCCATAGATTTTTTTTTTCCTTTCTCTTTTTGTTTGTCTATCTTGGGACATCATAATCTTGGGTATTTTTGCAGGGTTGCAGCTAGCAATTATCTCCGAAAGGCTGGTGAAGTCCATGGCACTGTTGAA</genome_strand>
        <mrna_strand>CAACATGTTTGATTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGTTGATGGTGCTGATAATGAAGCTGAAGCAGCAAAGATTGCACGTTCAGTGGCTTCCTCTTCACTTGTCAAG.................................................................................GCTGCTGTATACGGTAGGGATCCAAATTGGGGCCGTATTGCTTGTGCTGCTGGCTATGCAGGTATCCCTTTCAACGCTGACAAGCTTCGGATATCACTTGGAGATATTGTGCTTATGGAAGCAGGACAACCACTTCCATTTGATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCAGCTAGCAATTATCTCCGAAAGGCTGGGGAAGTCCATGGCACTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342086" ref_strand="+" ref_description="SGN-E342086 [cTOF-10-N14]">
      <seq>ttccatatcttcacctacagctttgaagcttgtatctgccattaaaggtagccgtgagaaacaaggcaagccacccaagaagctgtctgtgacatgggctcccgatgtgtatgaccctatcccaacagcagcttcgcatgtgccaatcaaggggcaacgccacaggagtgaccacaggaagaatggaaagagcaagcagaaaagtaatggcaaatcttcacgtggaagcaaaggtaaagacaagaaacaaggtcgcaaacatggtnggaagtaccaggaggagttattatcctctagaggataaggacataatgagttgtaatcgctttcactgtctggaggatgaaattactgctcattctagtgggctgcaggctggtgccatggattatgatattggcagccccccggattcattctgcggtagcagtttccgaaagaaatctgtcacagagttgcatttcccagttgcaaaggcttcatgagcttcctttctgattgttgggtgtgttttcttctcgattgtttccttctagttgtaaataaataagtttgacgcttatctgagttgtgggaagttgttatagaaggtgttggcattttttgtacttaaaaaaacttattaacttttgacctgttgaatggacggatgacttttttgcattgctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="25942" stop="24689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25635" g_stop="24990" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="668" r_length="652" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E342086" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25635" e_stop="24990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTTTGAAGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAGCCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGT-GGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTT-GGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGG-AGTTGTTATAG-AGTTGTTGGCA-TTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGAC-TTTTTGCATTGCT</genome_strand>
        <mrna_strand>ACAGCTTTGAAGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAGCCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTNGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAAGTTGTTATAGAAGGTGTTGGCATTTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTTGCATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614977" ref_strand="+" ref_description="SGN-E614977 [64770]">
      <seq>atgtgtatgaccctatcccgacagcagtttcgcatgtgccaaacaaggtacaacgccacaggagtgaccacaggaagaatggaaagaataagcagaagagtaatggcaaatcttcacgtgggagcaaaggtaaagaaaagaaacaaggtcacaaacatggtggaagtacgaggaggagttattatcctctagaggataacgacataaggatttgttctagctttcactctctggaggataacattactgctcattctagtgggctgcaggctggtgccatggattatgatattggcagccccccggattcattctgtggtagcagtttcctaaagaaatctgtcacaaagttgcatttcccagttgcaaaggcttcatgagcttcctttctgatccgttggtgtgtgttcttctcgattgtttcctctagttctgtaaataaataagtttgacgctttaactgagttgtgtgagttgttggcatttttgtacttaaaaaccttataaacttttgacctgttgaatggacggatgacattttgctttgctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="25847" stop="24689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25547" g_stop="24990" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E614977" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25547" e_stop="24990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGAT-TGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAG-T-TGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGCATTGCT</genome_strand>
        <mrna_strand>ATGTGTATGACCCTATCCCGACAGCAGTTTCGCATGTGCCAAACAAGGTACAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAATAAGCAGAAGAGTAATGGCAAATCTTCACGTGGGAGCAAAGGTAAAGAAAAGAAACAAGGTCACAAACATGGTGGAAGTACGAGGAGGAGTTATTATCCTCTAGAGGATAACGACATAAGGATTTGTTCTAGCTTTCACTCTCTGGAGGATAACATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGTGGTAGCAGTTTCCTAAAGAAATCTGTCACAAAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATCCGTTGGTGTGTGTTCTTCTCGATTGTTTCC-TCTAGTTCTGTAAATAAATAAGTTTGACGC-T-T-T-A--ACT--GAGTTG-TGT-GAGTTGTTGGCATTTTTGTACTT-AAAAACCTTATAAACTTTTGACCTGTTGAATGGACGGATGACATTTTGCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713590" ref_strand="+" ref_description="SGN-E713590 [FB09AC04]">
      <seq>cttgatttacaggaacattccaacacattggaggaagatggaactgaagatatgcatgcaaatgatgctgacactggcagtacggactcagagaaatgcttgatcaagtcctcagaatttccatgctcttctatgagcactccccctgctgagttggttcatgagaaggagcaggaggctgatgctaaatcaactgacttgccttattcacgttccatatcttcacctacagctttgaagcttgtatctgccattaaaggtagccgtgagaaacaaggcaagccacccaagaagctgtctgtgacatgggctcccgatgtgtatgaccctatcccaacagcagcttcgcatgtgccaatcaaggggcaacgccacaggagtgaccacaggaagaatggaaagagcaagcagaaaagtaatggcaaatcttcacgtggaagcaaaggtaaagacaagaaacaaggtcgcaaacatggtggaagtaccaggaggagttattatcctctagaggataaggacataatgagttgtaatcgctttcactgtctggaggatgaaattactgctcattctagtgggctgcaggctggtgccatggattatgatattggcagccccccggattcattctgcggtagcagtttccgaaagaaatctgtcacagagttgcatttcccagttgcaaaggcttcatgagcttcctttctgattgttggtgtgttttcttctcgattgtttccttctagttgtaaataaataagtttgacgcttatctgagttgtgggagttgttatagagttgttggcatttttgtacttaaaaaacttattaacttttgacctgttgaatggacggatgactttttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="27247" stop="24695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26947" g_stop="26719" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26718" i_stop="25636" i_length="1083">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25635" g_stop="24995" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="868" r_length="640" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E713590" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26947" e_stop="26719"/>
          <exon e_start="25635" e_stop="24995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCATGAGAAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTATTCACGTTCCATATCTTCACCTGTGAGTTTTGTGTCCTGAGACATTTAATGTTAGTTTTCTAGCATAATCATTTTAACGATGACGGGTTTCTTACATATAAAAAAGACGTAGAAGGTTTTTTGACTCTTGTTCTAAATGAAGTTTTAGTTCACTTGAACATATCTTTTGTTATATAAACAATGTATTGTTGTTGTCTGCTTACACTTGTATTGCCAATTTTGAAGCATATTCATTTTAACGATAAAGGATTTCTTACATATAAAAAAGACCTAGTCCAAGATATCCTATGTTATTTAGGAAAATGTACTTTTGTCTGCTTAGCTGTATGCATTCTGGCCTCAGTTCACGAATCACAACATGAGCATTACTAGTGGGAAGTGTTAATGGTTTATGTGTCATGTTTAGTTTCTTTTCACAGTTTTGAGGGATGGGGGATATCTATTATGTCTTGAATAACTTGTAGGAGGATATTCGAGCCATGGGCATATGAAGTCTGCTGTTTCCTTCAGCCATACCTTTATAACTATTGCTTATTTGTTCACCTTTACCCCTTTTGGTGGTAGGTTGCTATAGGATTTATCAGTTCTCATCTGTTTGGGCTATTGTTTTGTCAATATAATGAGCCATAATTTCCTTAGTACTCGCCCCGTCCCGATTTATGTGGCACGGGTTGACTTGGTGCAAGGCTTAAGAAGATAACTTTTGAAATCTGTGGTCTAAACAACTCCTTTACCATGGTAAAAGGAGAACTTTAAGGTAACATTGTCTTCAACTGTAGAAAGGTGGTATTCTTTTTGAGACGACCTAAAATGGAAAATGTGTCACATAAATTGGGACAGAGGTTGTATATCTTTTTTTTTCAGCATATGTTTTGCGGTGCCTTGTAACTCTCTATCTGTTATTTGCACATGGCTCTCGACTCTGTTATAAAGCTGAAGCAACAGTATTTTGGAACAGCAGTTGGAGCATATAAATTCCCTCTCATACACAGGGGAGACTCTGTGTTGGGATTTTTTCAGCGTTGAGCTATTAAGTTATTTTCTTATCATATTGTTGGTTAACAGTTGTGTTTTTCCCTTTCTTTTTTTTTTTTTTAATTCTCAGACAGCTTTGAAGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAGCCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGCA</genome_strand>
        <mrna_strand>CTTGATTTAC-AGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCATGAGAAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTATTCACGTTCCATATCTTCACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTTTGAAGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAGCCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTT-AAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371817" ref_strand="+" ref_description="SGN-E371817 [TUS-30-E23](-)">
      <seq>gaagaatggaaagagcaagcagaaaagtaatggcaaatcttcacgtggaagcaaaggtaaagacaagaaacaaggtcgcaaacatggtggaagtaccaggaggagttattatcctttagaggataaggacataatgagttgtaatcgctttcactgtttggaggatgaaattactgctcattttagtgggctgcaggctggtgccatggattatgatattggcagccccccggattcattttgcggtagcagtttccgaaagaaatctgtcacaaagttgcatttcccagttgcaaaggcttcatgagcttcctttttgattgttggtgtgtttttttttcgattgtttccttctagttgtaaataaataagtttgacgcttatttgagttgtgggagttgttataaagttgttggcatttttgtacttaaaaaaacttattaacttttgacctgttgaatggacggatgactttttgccaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="25774" stop="24696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25474" g_stop="24996" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="506"/>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E371817" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25474" e_stop="24996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGC</genome_strand>
        <mrna_strand>GAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTTTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTTTGGAGGATGAAATTACTGCTCATTTTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTTTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAAAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTTTGATTGTTGGTGTGTTTTTTTTTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATTTGAGTTGTGGGAGTTGTTATAAAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371818" ref_strand="+" ref_description="SGN-E371818 [TUS-30-E23]">
      <seq>aagaatggaaagagcaagcagaaaagtaatggcaaatcttcacgtggaagcaaaggtaaagacaagaaacaaggtcgcaaacatggtggaagtaccaggaggagttattatcctctagaggataaggacataatgagttgtaatcgctttcactgtctggaggatgaaattactgctcattctagtgggctgcaggctggtgccatggattatgatattggcagccccccggattcattctgcggtagcagtttccgaaagaaatctgtcacagagttgcatttcccagttgcaaaggcttcatgagcttcctttctgattgttggtgtgttttcttctcgattgtttccttctagttgtaaataaataagtttgacgcttatctgagttgtgggagttgttatagagttgttggcatttttgtacttaaaaaaacttattaacttttgacctgttgaatggacggatgactttttgcnnaanaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="25773" stop="24696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25473" g_stop="24996" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="506"/>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E371818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25473" e_stop="24996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGC</genome_strand>
        <mrna_strand>AAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713008" ref_strand="+" ref_description="SGN-E713008 [FB06BH04]">
      <seq>cacttggaagcaaaggtaaagacaagaaacaaggtcgcaaacatggtggaagtaccaggaggagttattatcctctagaggataaggacataatgagttgtaatcgctttcactgtctggaggatgaaattactgctcattctagtgggctgcaggctggtgccatggattatgatattggcagccccccggattcattctgcggtagcagtttccgaaagaaatctgtcacagagttgcatttcccagttgcaaaggcttcatgagcttcctttctgattgttggtgtgttttcttctcgattgtttccttctagttgtaaataaataagtttgacgcttatctgagttgtgggagttgttatagagttgttggcatttttgtacttaaaaaaacttattaacttttgacctgttgaatggacggatgactttttgcaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="25733" stop="24695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25433" g_stop="24996" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="466"/>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E713008" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25433" e_stop="24996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGC</genome_strand>
        <mrna_strand>CACTTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573865" ref_strand="-" ref_description="SGN-E573865 [33243]">
      <seq>tgctgagttggttcatgggaaggaggagcaggaggctgatgctaaatcaactgacttgccttattcacattccatatcttcacctacagctttgacgcttgtatctgccattaaaggtagccgtgagaaacaaggcaaaccacccaagaagctgtctgtgacatgggctcccgatgtgtatgaccctatcccgacagcagtttcgcatgtgccaaacaaggtacaacgccacaggagtgaccacaggaagaatggaaagaataagcagaagagtaatggcaaatcttcacgtgggagcaaaggtaaagaaaagaaacaaggtcacaaacatggtggaagtacgaggaggagttattatcctctagaggataacgacataatgatttgttctagctttcactctctggaggataacattactgctcattctagtgggctgcaggctggtgccatggattatgatattggcagccccccggattcattctgtggtagcagtttcataaagaaatctgtcacaaagttgcatttcccagttgcaaaggcttcatgagcttcctttctgatccgttggtgtgtgttcttctcgattgtttcctctagttctgtaaataaataagtttgacgctttaactgagttgtgtgagttgttggcatttttgtacttaaaaaccttataaacttttgacctgttgaatggacggatgacattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="27083" stop="24697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26800" g_stop="26719" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26718" i_stop="25636" i_length="1083">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25635" g_stop="24997" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="715" r_length="630" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E573865" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573865" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26800" e_stop="26719"/>
          <exon e_start="25635" e_stop="24997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAGTTGGTTCATG---AGAAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTATTCACGTTCCATATCTTCACCTGTGAGTTTTGTGTCCTGAGACATTTAATGTTAGTTTTCTAGCATAATCATTTTAACGATGACGGGTTTCTTACATATAAAAAAGACGTAGAAGGTTTTTTGACTCTTGTTCTAAATGAAGTTTTAGTTCACTTGAACATATCTTTTGTTATATAAACAATGTATTGTTGTTGTCTGCTTACACTTGTATTGCCAATTTTGAAGCATATTCATTTTAACGATAAAGGATTTCTTACATATAAAAAAGACCTAGTCCAAGATATCCTATGTTATTTAGGAAAATGTACTTTTGTCTGCTTAGCTGTATGCATTCTGGCCTCAGTTCACGAATCACAACATGAGCATTACTAGTGGGAAGTGTTAATGGTTTATGTGTCATGTTTAGTTTCTTTTCACAGTTTTGAGGGATGGGGGATATCTATTATGTCTTGAATAACTTGTAGGAGGATATTCGAGCCATGGGCATATGAAGTCTGCTGTTTCCTTCAGCCATACCTTTATAACTATTGCTTATTTGTTCACCTTTACCCCTTTTGGTGGTAGGTTGCTATAGGATTTATCAGTTCTCATCTGTTTGGGCTATTGTTTTGTCAATATAATGAGCCATAATTTCCTTAGTACTCGCCCCGTCCCGATTTATGTGGCACGGGTTGACTTGGTGCAAGGCTTAAGAAGATAACTTTTGAAATCTGTGGTCTAAACAACTCCTTTACCATGGTAAAAGGAGAACTTTAAGGTAACATTGTCTTCAACTGTAGAAAGGTGGTATTCTTTTTGAGACGACCTAAAATGGAAAATGTGTCACATAAATTGGGACAGAGGTTGTATATCTTTTTTTTTCAGCATATGTTTTGCGGTGCCTTGTAACTCTCTATCTGTTATTTGCACATGGCTCTCGACTCTGTTATAAAGCTGAAGCAACAGTATTTTGGAACAGCAGTTGGAGCATATAAATTCCCTCTCATACACAGGGGAGACTCTGTGTTGGGATTTTTTCAGCGTTGAGCTATTAAGTTATTTTCTTATCATATTGTTGGTTAACAGTTGTGTTTTTCCCTTTCTTTTTTTTTTTTTTAATTCTCAGACAGCTTTGAAGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAGCCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGAT-TGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAG-T-TGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTG</genome_strand>
        <mrna_strand>TGCTGAGTTGGTTCATGGGAAGGAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTATTCACATTCCATATCTTCACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTTTGACGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAACCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCGACAGCAGTTTCGCATGTGCCAAACAAGGTACAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAATAAGCAGAAGAGTAATGGCAAATCTTCACGTGGGAGCAAAGGTAAAGAAAAGAAACAAGGTCACAAACATGGTGGAAGTACGAGGAGGAGTTATTATCCTCTAGAGGATAACGACATAATGATTTGTTCTAGCTTTCACTCTCTGGAGGATAACATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGTGGTAGCAGTTTCATAAAGAAATCTGTCACAAAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATCCGTTGGTGTGTGTTCTTCTCGATTGTTTCC-TCTAGTTCTGTAAATAAATAAGTTTGACGC-T-T-T-A--ACT--GAGTTG-TGT-GAGTTGTTGGCATTTTTGTACTT-AAAAACCTTATAAACTTTTGACCTGTTGAATGGACGGATGACATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283184" ref_strand="+" ref_description="SGN-E283184 [cLER-17-H19]">
      <seq>aagaatggaaagagcaagcagaaaagtaatggcaaatcttcacgtggaagcaaaggtaaagacaagaaacaaggtcgcaaacatggtggaagtaccaggaggagttattatcctctagaggataaggacataatgagttgtaatcgctttcactgtctggaggatgaaattactgctcattctagtgggctgcaggctggtgccatggattatgatattggcagccccccggattcattctgcggtagcagtttccgaaagaaatctgtcacagagttgcatttcccagttgcaaaggcttcatgagcttcctttctgattgttggtgtgttttcttctcgattgtttccttctagttgtaaataaataagtttgacgcttatctgagttgtgggagttgttatagagttgttggcatttttgtacttaaaaaaacttattaacttttgacctgttgaatggacggatgactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="25773" stop="24699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25473" g_stop="24999" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E283184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25473" e_stop="24999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTT</genome_strand>
        <mrna_strand>AAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337768" ref_strand="+" ref_description="SGN-E337768 [cTOE-17-H3]">
      <seq>ctctgagtattaaggatggtgaagacttgatttacaaggaacattccaacacattggaggaagatggaactgaagatatgcatgcaaatgatgctgacactggcagtacggactcagagaaatgcttgatcaagtcctcagaatttccatgctcttctatgagcactccccctgctgagttggttcatgagaaggagcaggaggctgatgctaaatcaactgacttgccttattcacgttccatatcttcacctacagctttgaagcttgtatctgccattaaaggtagccgtgagaaacaaggcaagccacccaagaagctgtctgtgacatgggctcccgatgtgtatgaccctatcccaacagcagcttcgcatgtgccaatcaaggggcaacgccacaggagtgaccacaggaagaatggaaagagcaagcagaaaagtaatggcaaatcttcacgtggaagcaaaggtaaagacaagaaacaaggtcgcaaacatggtggaagtaccaggaggagttattatcctctagaggataaggacataatgagttgtaatcgctttcactgtctggagggatgaaatactgctcattctagtgggctgcaggctggtgccatggattatgatattggcagccccccggattcattctgcggtagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="27272" stop="24924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26972" g_stop="26719" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26718" i_stop="25636" i_length="1083">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25635" g_stop="25224" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="666" r_length="412" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E337768" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26972" e_stop="26719"/>
          <exon e_start="25635" e_stop="25224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCATGAGAAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTATTCACGTTCCATATCTTCACCTGTGAGTTTTGTGTCCTGAGACATTTAATGTTAGTTTTCTAGCATAATCATTTTAACGATGACGGGTTTCTTACATATAAAAAAGACGTAGAAGGTTTTTTGACTCTTGTTCTAAATGAAGTTTTAGTTCACTTGAACATATCTTTTGTTATATAAACAATGTATTGTTGTTGTCTGCTTACACTTGTATTGCCAATTTTGAAGCATATTCATTTTAACGATAAAGGATTTCTTACATATAAAAAAGACCTAGTCCAAGATATCCTATGTTATTTAGGAAAATGTACTTTTGTCTGCTTAGCTGTATGCATTCTGGCCTCAGTTCACGAATCACAACATGAGCATTACTAGTGGGAAGTGTTAATGGTTTATGTGTCATGTTTAGTTTCTTTTCACAGTTTTGAGGGATGGGGGATATCTATTATGTCTTGAATAACTTGTAGGAGGATATTCGAGCCATGGGCATATGAAGTCTGCTGTTTCCTTCAGCCATACCTTTATAACTATTGCTTATTTGTTCACCTTTACCCCTTTTGGTGGTAGGTTGCTATAGGATTTATCAGTTCTCATCTGTTTGGGCTATTGTTTTGTCAATATAATGAGCCATAATTTCCTTAGTACTCGCCCCGTCCCGATTTATGTGGCACGGGTTGACTTGGTGCAAGGCTTAAGAAGATAACTTTTGAAATCTGTGGTCTAAACAACTCCTTTACCATGGTAAAAGGAGAACTTTAAGGTAACATTGTCTTCAACTGTAGAAAGGTGGTATTCTTTTTGAGACGACCTAAAATGGAAAATGTGTCACATAAATTGGGACAGAGGTTGTATATCTTTTTTTTTCAGCATATGTTTTGCGGTGCCTTGTAACTCTCTATCTGTTATTTGCACATGGCTCTCGACTCTGTTATAAAGCTGAAGCAACAGTATTTTGGAACAGCAGTTGGAGCATATAAATTCCCTCTCATACACAGGGGAGACTCTGTGTTGGGATTTTTTCAGCGTTGAGCTATTAAGTTATTTTCTTATCATATTGTTGGTTAACAGTTGTGTTTTTCCCTTTCTTTTTTTTTTTTTTAATTCTCAGACAGCTTTGAAGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAGCCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGA-GGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCA</genome_strand>
        <mrna_strand>CTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCATGAGAAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTATTCACGTTCCATATCTTCACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTTTGAAGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAGCCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGGATGAAA-TACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452966" ref_strand="+" ref_description="SGN-E452966 [cSTS-18-B5]">
      <seq>ctcttggttgtgcttctggcattccaggaggtccttttgctagtgatcttgtgcaccgttttactgaatctctgaatattaaggatggtgaagacttgatttacaaggaagattccaacacattggaggaagatggaagtgaagaagatatggatgcaaatgacactgacgctggcagtacagactcaaaaaaatgcttgatcaagtcctcagaatttccatgctctgctttgactccccctgctgagttggttcatgggaaggaggagcaggaggctgatgctaaatcaactgacttgccttattcacattccatatcttcacctacagctttgacgcttgtatctgccattaaaggtagccgtgagaaacaaggcaaaccacccaagaagctgtctgtgacatgggctcccgatgtgtatgaccctatcccgacagcagtttcgcatgtgccaaacaaggtacaacgccacaggagtgaccacaggaagaatggaaagaataagcagaagagtaatggcaaatcttcacgtgggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="27341" stop="25123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27041" g_stop="26719" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26718" i_stop="25636" i_length="1083">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25635" g_stop="25423" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="539" r_length="213" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E452966" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27041" e_stop="26719"/>
          <exon e_start="25635" e_stop="25423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACT---GAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCAT--G-AGAAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTATTCACGTTCCATATCTTCACCTGTGAGTTTTGTGTCCTGAGACATTTAATGTTAGTTTTCTAGCATAATCATTTTAACGATGACGGGTTTCTTACATATAAAAAAGACGTAGAAGGTTTTTTGACTCTTGTTCTAAATGAAGTTTTAGTTCACTTGAACATATCTTTTGTTATATAAACAATGTATTGTTGTTGTCTGCTTACACTTGTATTGCCAATTTTGAAGCATATTCATTTTAACGATAAAGGATTTCTTACATATAAAAAAGACCTAGTCCAAGATATCCTATGTTATTTAGGAAAATGTACTTTTGTCTGCTTAGCTGTATGCATTCTGGCCTCAGTTCACGAATCACAACATGAGCATTACTAGTGGGAAGTGTTAATGGTTTATGTGTCATGTTTAGTTTCTTTTCACAGTTTTGAGGGATGGGGGATATCTATTATGTCTTGAATAACTTGTAGGAGGATATTCGAGCCATGGGCATATGAAGTCTGCTGTTTCCTTCAGCCATACCTTTATAACTATTGCTTATTTGTTCACCTTTACCCCTTTTGGTGGTAGGTTGCTATAGGATTTATCAGTTCTCATCTGTTTGGGCTATTGTTTTGTCAATATAATGAGCCATAATTTCCTTAGTACTCGCCCCGTCCCGATTTATGTGGCACGGGTTGACTTGGTGCAAGGCTTAAGAAGATAACTTTTGAAATCTGTGGTCTAAACAACTCCTTTACCATGGTAAAAGGAGAACTTTAAGGTAACATTGTCTTCAACTGTAGAAAGGTGGTATTCTTTTTGAGACGACCTAAAATGGAAAATGTGTCACATAAATTGGGACAGAGGTTGTATATCTTTTTTTTTCAGCATATGTTTTGCGGTGCCTTGTAACTCTCTATCTGTTATTTGCACATGGCTCTCGACTCTGTTATAAAGCTGAAGCAACAGTATTTTGGAACAGCAGTTGGAGCATATAAATTCCCTCTCATACACAGGGGAGACTCTGTGTTGGGATTTTTTCAGCGTTGAGCTATTAAGTTATTTTCTTATCATATTGTTGGTTAACAGTTGTGTTTTTCCCTTTCTTTTTTTTTTTTTTAATTCTCAGACAGCTTTGAAGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAGCCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGC</genome_strand>
        <mrna_strand>CTCTTGGTTGTGCTTCTGGCATTCCAGGAGGTCCTTTTGCTAGTGATCTTGTGCACCGTTTTACTGAATCTCTGAATATTAAGGATGGTGAAGACTTGATTTACAAGGAAGATTCCAACACATTGGAGGAAGATGGAAGTGAAGAAGATATGGATGCAAATGACACTGACGCTGGCAGTACAGACTCAAAAAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTGCT-T-TG-ACTCCCCCTGCTGAGTTGGTTCATGGGAAGGAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTATTCACATTCCATATCTTCACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTTTGACGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAACCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCGACAGCAGTTTCGCATGTGCCAAACAAGGTACAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAATAAGCAGAAGAGTAATGGCAAATCTTCACGTGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304627" ref_strand="+" ref_description="SGN-E304627 [cLEX-11-P14]">
      <seq>tctttttccgagtagttgtagtcgaatctggtggaagtttgcgtgattttgctatacatcgacatactgaaagatttttgctgctctctttaattgatggccgtttgttctgctacttacaagtgtgactctgaaagtttaagttgcttttgtgagtcatcaaaggagactcttggttccgcttcttgctatccaggaggtccttttgttagtgatcttgggtaccatttcactgaatctctgagtattaaggatggtgaagacttgatttacaaggaacattccaacacattggaggaagatggaactgaagatatgcatgcaaatgatgctgacactggcagtacggactcagagaaatgcttgatcaagtcctcagaatttccatgctcttctatgagcactccccctgctgagttggttcatgagaaggagcaggaggctgatgctaaatcaactgacttgcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28378" stop="26441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28078" g_stop="28006" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="26741" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="470" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E304627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28078" e_stop="28006"/>
          <exon e_start="27137" e_stop="26741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCATGAGAAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTA</genome_strand>
        <mrna_strand>TCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCATGAGAAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597340" ref_strand="+" ref_description="SGN-E597340 [40841]">
      <seq>tcgaagggcatcgcagccttacgatgcattcggtgtcgccttttctattggatctgttgactttacctcaagctgcttctttctatggcgttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaattcatcttcgtctgtttattttttgttctgcgttgctgtttcagttgctatcgtgctggttttctgtttgtttggagggatttttcagctatttcagatctttttccaagtagttgtagccgaatctggtggaaatttgcgtgattttgctttatatcgacatactgaaagatttttgctgctctctttaattgatggccgtttgttctgctaattacaagtttgactctgaaagtttaagttgcttttgtgagtcatcaaaggagactcttggttgtgcttctggcaatccaggaggtccttttgttagtgatcttgggtaccatttcactgaatctctgaatattaaggatggtgaagacttgatttacaaggagcattccaacacattggaggaagatggaagtgaagatatgcatgcaaatgacactgaaactggcagtacggactcagaatgcttgatcaagtcctcagaatttccgtgctctgctatgagcactccccctgctgagttggttcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28623" stop="26482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28323" g_stop="28006" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="26782" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="668" r_length="353" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E597340" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28323" e_stop="28006"/>
          <exon e_start="27137" e_stop="26782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCATGAG</genome_strand>
        <mrna_strand>TCGAAGGGCATCGCAGCCTTACGATGCATTCGGTGTCGCCTTTTCTATTGGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGCGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAA-TTCATCTTCGTCTGTTTATTTTTTGTTCTG-CGTTGCTGTTTCAGTTGCTATCGTGCTGGTTTTCTGTTTGTTTGGA-GGGATTTTTCAGCTATTTCAGATCTTTTTCCAAGTAGTTGTAGCCGAATCTGGTGGAAATTTGCGTGATTTTGCTTTATATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTAATTACAAGTTTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTGTGCTTCTGGCAATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAATATTAAGGATGGTGAAGACTTGATTTACAAGGAGCATTCCAACACATTGGAGGAAGATGGAAGTGAAGATATGCATGCAAATGACACTGAAACTGGCAGTACGGACTC--AG-AATGCTTGATCAAGTCCTCAGAATTTCCGTGCTCTGCTATGAGCACTCCCCCTGCTGAGTTGGTTCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364790" ref_strand="+" ref_description="SGN-E364790 [cLPT-4-D8]">
      <seq>tgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaatttcatcttcgtctgttttctttttcttctgttgttgctgtttcagttgtgatcttgctggttttctgtttctttcgaggggatttttcagctgtttcacatctttttccgagtagttgtagtcgaatctggtggaagtttgcgtgattttgctatacatcgacatactgaaagattttagctgctctctttaattgatggccgtttgttctgctaattacaagtgtgactctgaaagtttaagttgcttttgtgagtcatcaaaggagactcttggttgcgcttcttgcaatccaggaggtccttttgttagtgatcttgggtaccatttcactgaatctctgagtattaaggatggtgaagacttgatttacaaggaacattccaacacattggaggaagatggaagtgaagatatgcatgcaaatgatgctgacactggcagtacggactcagaaaaatgcttgatcaagtcctcagaatttccaggctcttctattagcactccccctgctgagttggttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28530" stop="26484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28230" g_stop="28006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="26784" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="579" r_length="354" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E364790" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28230" e_stop="28006"/>
          <exon e_start="27137" e_stop="26784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCATG</genome_strand>
        <mrna_strand>TGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTAATTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTGCGCTTCTTGCAATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAAGTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAAAAATGCTTGATCAAGTCCTCAGAATTTCCAGGCTCTTCTATTAGCACTCCCCCTGCTGAGTTGGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709373" ref_strand="+" ref_description="SGN-E709373 [FA51CH04]">
      <seq>cgcatctttacgatgcattcggtgtcgccttttctatttgatctgttgactttacctcaagctgcttctttctatggagttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaatttcatcttcgtctgttttctttttcttctgttgttgctgtttcagttgtgatcttgctggttttctgtttctttcgaggggatttttcagctgtttcacatctttttccgagtagttgtagtcgaatctggtggaagtttgcgtgattttgctatacatcgacatactgaaagatttttgctgctctctttaattgatggccgtttgttctgctacttacaagtgtgactctgaaagtttaagttgcttttgtgagtcatcaaaggagactcttggttccgcttcttgctatccaggaggtccttttgttagtgatcttgggtaccatttcactgaatctctgagtattaaggatggtgaagacttgatttacaaggaacattccaacacattggaggaagatggaactgaagatatgcatgcaaatgatgctgacactggcagtacggactcagagaaatgcttgatcaagtccctcagaatttccatgctcttctatgagcactccccccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28612" stop="26501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28312" g_stop="28006" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="26795" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="650" r_length="343" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E709373" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28312" e_stop="28006"/>
          <exon e_start="27137" e_stop="26795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGT-CCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGA</genome_strand>
        <mrna_strand>CGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCC-CCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364856" ref_strand="+" ref_description="SGN-E364856 [cLPT-4-D7]">
      <seq>tgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaatttcatcttcgtctgttttctttttcttctgttgttgctgtttcagttgtgatcttgctggttttctgtttctttcgaggggatttttcagctgtttcacatctttttccgagtagttgtagtcgaatctggtggaagtttgcgtgattttgctatacatcgacatactgaaagattttagctgctctctttaattgatggccgtttgttctgctaattacaagtgtgactctgaaagtttaagttgcttttgtgagtcatcaaaggagactcttggttgcgcttcttgcaatccaggaggtccttttgttagtgatcttgggtaccatttcactgaatctctgagtattaaggatggtgaagacttgatttacaaggaacattccaacacattggaggaagatggaagtgaagatatgcatgcaaatgatgctgacactggcagtacggactcagaaaaatgcttgatcaagtcctcagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28530" stop="26528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28230" g_stop="28006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="26828" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="535" r_length="310" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E364856" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28230" e_stop="28006"/>
          <exon e_start="27137" e_stop="26828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATT</genome_strand>
        <mrna_strand>TGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTAATTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTGCGCTTCTTGCAATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAAGTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAAAAATGCTTGATCAAGTCCTCAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360968" ref_strand="+" ref_description="SGN-E360968 [cLPP-13-F17]">
      <seq>atcgaagggcatcgcatctttacgatgcattcggtgtcgccttttctatttgatctgttgactttacctcaagctgctgcttctttctatggagttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaatttcatcttcgtctgttttctttttcttctgttgttgctgtttcagttgtgatcttgctggttttctgtttctttcgaggggatttttcagctgtttcacatctttttccgagtagttgtagtcgaatctggtggaagtttgcgtgattttgctatacatcgacatactgaaagattttagctgctctctttaattgatggccgtttgttctgctaattacaagtgtgactctgaaagtttaagttgcttttgtgagtcatcaaaggagactcttggttgcgcttcttgcaatccaggaggtccttttgttagtgatcttgggtaccatttcactgaatctctgagtattaaggatggtgaagacttgatttacaaggaacattccaacacattggaggaagatggaagtgaagatatgcatgcaaatgatgctgacactggcagtacggactcagaaaaatgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28624" stop="26544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28324" g_stop="28006" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="26844" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="616" r_length="294" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E360968" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28324" e_stop="28006"/>
          <exon e_start="27137" e_stop="26844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGC---TGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGA</genome_strand>
        <mrna_strand>ATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTAATTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTGCGCTTCTTGCAATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAAGTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAAAAATGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367156" ref_strand="+" ref_description="SGN-E367156 [cLPT-5-D10]">
      <seq>atagttttagttaacgttaaatttcatcttcgtctgttttctttttcttctgttgttgctgtttcagttgtgatcttgctggttttctgtttctttcgaggggatttttcagctgtttcacatctttttccgagtagttgtagtcgaatctggtggaagtttgcgtgattttgctatacatcgacatactgaaagattttagctgctctctttaattgatggccgtttgttctgctaattacaagtgtgactctgaaagtttaagttgcttttgtgagtcatcaaaggagactcttggttgcgcttcttgcaatccaggaggtccttttgttagtgatcttgggtaccatttcactgaatctctgagtattaaggatggtgaagacttgatttacaaggaacattccaacacattggaggaagatggaagtgaagatatgcatgcaaatgatgctgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28500" stop="26572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28200" g_stop="28006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="26872" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="461" r_length="266" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E367156" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28200" e_stop="28006"/>
          <exon e_start="27137" e_stop="26872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACT</genome_strand>
        <mrna_strand>ATAGTTTTAGTTAACGTTAAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTAATTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTGCGCTTCTTGCAATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAAGTGAAGATATGCATGCAAATGATGCTGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484111" ref_strand="+" ref_description="SGN-E484111 [cSTE-12-I19]">
      <seq>gatttacctcgttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattatttcgatcactgtaatttgagcttttgttgtgtggaggtgaatcgagttttttttttttgggaattagggattttggttttggtggcggtgggaaatcgaagggcatcgcatccttacgatgcattcggtgtcgccttttctattggatctgttgactttacctcaagctgcttctttctatggcgttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaattcatcttcgtctgtttattttttgttctgcgttgctgtttcagttgctatctgctggttttctgtttgtttcgagggatttttcagctatatcagatctttttccgagtagttgtagccgaatctggtggaaatttgcgtgattttgctttatatcgacatactgaaagatctttgctgctctctttaattgatggccatttgttctgctaattacaagttcgactctgaaagtataagttgcttttgtgagtcatcaaaggagactcttggttgtgcttctggcattccaggaggtccttttgctagtgatctttgccaccgttttactgaatctctgaatattaaggatggtgaagacttgatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28793" stop="26638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28493" g_stop="28006" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="26938" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="675" r_length="200" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E484111" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28493" e_stop="28006"/>
          <exon e_start="27137" e_stop="26938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTA-CTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTAC</genome_strand>
        <mrna_strand>GATTTACCTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTATTTCGATCACTGTAATTTGAGCTTTTGTTGTGTGGAGGTGAATC-----GAGTTTTTTTTTTTT-----GGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCCTTACGATGCATTCGGTGTCGCCTTTTCTATTGGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGCGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAA-TTCATCTTCGTCTGTTTATTTTTTGTTCTG-CGTTGCTGTTTCAGTTGCTATC-TGCTGGTTTTCTGTTTGTTTCGA-GGGATTTTTCAGCTATATCAGATCTTTTTCCGAGTAGTTGTAGCCGAATCTGGTGGAAATTTGCGTGATTTTGCTTTATATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGCTGCTCTCTTTAATTGATGGCCATTTGTTCTGCTAATTACAAGTTCGACTCTGAAAGTATAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTGTGCTTCTGGCATTCCAGGAGGTCCTTTTGCTAGTGATCTTTGCCACCGTTTTACTGAATCTCTGAATATTAAGGATGGTGAAGACTTGATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464822" ref_strand="+" ref_description="SGN-E464822 [cPRO-19-O7]">
      <seq>cttcatccattatttcgatcactgtaatttgagattttgttgtgtggaggtgaatcgaggtttttattttttggaattagggattttggttttggtggcggtgggaaatcgaagggcatcgcatccctacgatgcattcggtgtcgccttttgtattggatctgttgactttacctcaagctgcttctttctatggcgttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaattcatcttcgtctgtttattttttgttctgcgttgctgtttcagttgctatctgctggttttctgtttgtttcgagggatttttcagctatatcagatctttttccgagtagttgtagccgaatctggtggaaatttgcgtgattttgctttatatcgacatactgaaagatctttgctgctctctttaattgatggccgtttgttctgctaattacaagttcgactctgaaagtataagttgcttttgtgagtcatcaaaggagactcttggttgtgcttctggcattccaggaggtccttttgctagtgatcttgtgcaccgttttactgaatctctgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28659" stop="26663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28441" g_stop="28006" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="26963" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="597" r_length="175" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E464822" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28441" e_stop="28006"/>
          <exon e_start="27137" e_stop="26963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTAT</genome_strand>
        <mrna_strand>CTTCATCCATTATTTCGATCACTGTAATTTGAGATTTTGTTGTGTGGAGGTGAATCGA---G-GTTTTTATTTTTT------GGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCCCTACGATGCATTCGGTGTCGCCTTTTGTATTGGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGCGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAA-TTCATCTTCGTCTGTTTATTTTTTGTTCTG-CGTTGCTGTTTCAGTTGCTATC-TGCTGGTTTTCTGTTTGTTTCGA-GGGATTTTTCAGCTATATCAGATCTTTTTCCGAGTAGTTGTAGCCGAATCTGGTGGAAATTTGCGTGATTTTGCTTTATATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTAATTACAAGTTCGACTCTGAAAGTATAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTGTGCTTCTGGCATTCCAGGAGGTCCTTTTGCTAGTGATCTTGTGCACCGTTTTACTGAATCTCTGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487980" ref_strand="+" ref_description="SGN-E487980 [cSTE-27-K7]">
      <seq>tcgagttttttggtcttccgttgaattcgatggtaatttagggctataataatgatccgatttactcgttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattatttcgatcactgtaatttgagattttgttgtgtggaggtgaatcgaggtttttattttttggaattagggattttggttttggtggcggtgggaaatcgaagggcatcgcatccctacgatgcattcggtgtcgccttttgtattggatctgttgactttacctcaagctgcttctttctatggcgttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaattcatcttcgtctgtttattttttgttctgcgttgctgtttcagttgctatctgctggttttctgtttgtttcgagggatttttcagctatatcagatctttttccgagtagttgtagccgaatctggtggaaatttgcgtgattttgctttatatcgacatactgaaagatctttgctgctctctttaattgatggccgtttgttctgctaattacaagttcgactctgaaagtataaagtgcttttgtgagtcatcaaaggagactcttggttgtgcttctggcattccaggaggtccttttgctagtgatcttgtgcaccgttttactgaatctctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28847" stop="26667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28551" g_stop="28006" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="26967" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="703" r_length="171" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E487980" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28551" e_stop="28006"/>
          <exon e_start="27137" e_stop="26967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGTGTTTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGA</genome_strand>
        <mrna_strand>TCGAGTTTTTTGGTCTTCCGTTGAATTCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTATTTCGATCACTGTAATTTGAGATTTTGTTGTGTGGAGGTGAATCGA---G-GTTTTTATTTTTT------GGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCCCTACGATGCATTCGGTGTCGCCTTTTGTATTGGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGCGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAA-TTCATCTTCGTCTGTTTATTTTTTGTTCTG-CGTTGCTGTTTCAGTTGCTATC-TGCTGGTTTTCTGTTTGTTTCGA-GGGATTTTTCAGCTATATCAGATCTTTTTCCGAGTAGTTGTAGCCGAATCTGGTGGAAATTTGCGTGATTTTGCTTTATATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTAATTACAAGTTCGACTCTGAAAGTATAAAGTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTGTGCTTCTGGCATTCCAGGAGGTCCTTTTGCTAGTGATCTTGTGCACCGTTTTACTGAATCTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568648" ref_strand="+" ref_description="SGN-E568648 [12964]">
      <seq>ctttttctcccacatctccccaatttcagattttatggtcttccgttgaattcgatggtaatttagggctataataatgatccgatttactcgttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattatttcgatcactgtaatttgagattttgttgtgtggaggtgaatcgaggtttttattttttggaattagggattttggttttggtggcggtgggaaatcgaagggcatcgcatccctacgatgcattcggtgtcgccttttgtattggatctgttgactttacctcaagctgcttctttctatggcgttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaattcatcttcgtctgtttattttttgttctgcgttgctgtttcagttgctatctgctggttttctgtttgtttcgagggatttttcagctatatcagatctttttccgagtagttgtagccgaatctggtggaaatttgcgtgattttgctttatatcgacatactgaaagatctttgctgctctctttaattgatggccgtttgttctgctaattacaagttcgactctgaaagtataagttgcttttgtgagtcatcaaaggagactcttgggtgtgcttctgggcattccaagaagtcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28874" stop="26704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28574" g_stop="28006" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="27004" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="692" r_length="135" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E568648" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28574" e_stop="28006"/>
          <exon e_start="27137" e_stop="27004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTCACATATTCCCCCAATTTC-G-TGTTTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCT-TGCTATCCAGGAGGTCCTTTT</genome_strand>
        <mrna_strand>CTTTTTCTCCCACATCTCCCCAATTTCAGATTTTATGGTCTTCCGTTGAATTCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTATTTCGATCACTGTAATTTGAGATTTTGTTGTGTGGAGGTGAATCGA---G-GTTTTTATTTTTT------GGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCCCTACGATGCATTCGGTGTCGCCTTTTGTATTGGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGCGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAA-TTCATCTTCGTCTGTTTATTTTTTGTTCTG-CGTTGCTGTTTCAGTTGCTATC-TGCTGGTTTTCTGTTTGTTTCGA-GGGATTTTTCAGCTATATCAGATCTTTTTCCGAGTAGTTGTAGCCGAATCTGGTGGAAATTTGCGTGATTTTGCTTTATATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTAATTACAAGTTCGACTCTGAAAGTATAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGGTGTGCTTCTGGGCATTCCAAGAAGTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598108" ref_strand="+" ref_description="SGN-E598108 [73776]">
      <seq>atttgtctttttctcccacatctccccaatttcagttttttggtcttccgttgaattcgatggtaatttagggctataataatgatccgatttactcgttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattatttcgatcactgtaatttgagattttgttgtgtggaggtgaatcgaggtttttattttttggaattagggattttggttttggtggcggtgggaaatcgaagggcatcgcatccctacgatgcattcggtgtcgccttttgtattggatctgttgactttacctcaagctgcttctttctatggcgttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaattcatcttcgtctgtttattttttgttctgcgttgctgtttcagttgctatctgctggttttctgtttgtttcgagggatttttcagctatatcagatctttttccgagtagttgtagccgaatctggtggaaatttgcgtgattttgctttatatcgacatactgaaagatctttgctgctctctttaattgatggccgtttgttctgctaattacaagttcgactctgaaagtataagttgcttttgtgagtcatcaaaggagactcttggttggtgctttctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28880" stop="26733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28580" g_stop="28006" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="27018" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="680" r_length="118" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E598108" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28580" e_stop="28006"/>
          <exon e_start="27137" e_stop="27018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTCTCTTTCTCACATATTCCCCCAATTTC-GTGTTTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATC</genome_strand>
        <mrna_strand>ATTTGTCTTTTTCTCCCACATCTCCCCAATTTCAGTTTTTTGGTCTTCCGTTGAATTCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTATTTCGATCACTGTAATTTGAGATTTTGTTGTGTGGAGGTGAATCGA---G-GTTTTTATTTTTT------GGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCCCTACGATGCATTCGGTGTCGCCTTTTGTATTGGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGCGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAA-TTCATCTTCGTCTGTTTATTTTTTGTTCTG-CGTTGCTGTTTCAGTTGCTATC-TGCTGGTTTTCTGTTTGTTTCGA-GGGATTTTTCAGCTATATCAGATCTTTTTCCGAGTAGTTGTAGCCGAATCTGGTGGAAATTTGCGTGATTTTGCTTTATATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTAATTACAAGTTCGACTCTGAAAGTATAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTT--GGTGCTTTCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459661" ref_strand="+" ref_description="SGN-E459661 [cPRO-28-F11]">
      <seq>aatttcatttttgggtcttccgttgaattcgatggtaatttagggctataataatgatccgatttactcgttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattatttcgatcactgtaatttgagattttgttgtgtggaggtgaatcgaggtttgtttttgggaattagggattttggttttggtggcggtggaaaatcgaagggcatcgcagccttacgatgcattcggtgtcgccttttctattggatctgttgactttacctcaagctgcttctttctatggcgttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaattcatcttcgtctgtttattttttgttctgcgttgctgtttcagttgctatcgtgctggttttctgtttgtttggagggatttttcagctatttcagatctttttccaagtagttgtagccgaatctggtggaaatttgcgtgattttgctttatatcgacatactgaaagatttttgctgctctctttaattgatggccgtttgttctgctaattacagtttgactctgaaagtttagttgcttttgtgagtcatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28853" stop="26746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28553" g_stop="28006" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="27046" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="623" r_length="90" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E459661" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28553" e_stop="28006"/>
          <exon e_start="27137" e_stop="27046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCGTGTTTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAG</genome_strand>
        <mrna_strand>AATTTCATTTTTGGGTCTTCCGTTGAATTCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTATTTCGATCACTGTAATTTGAGATTTTGTTGTGTGGAGGTGAATCGA---G-G---TTTGTTTTT-----GGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGAAAATCGAAGGGCATCGCAGCCTTACGATGCATTCGGTGTCGCCTTTTCTATTGGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGCGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAA-TTCATCTTCGTCTGTTTATTTTTTGTTCTG-CGTTGCTGTTTCAGTTGCTATCGTGCTGGTTTTCTGTTTGTTTGGA-GGGATTTTTCAGCTATTTCAGATCTTTTTCCAAGTAGTTGTAGCCGAATCTGGTGGAAATTTGCGTGATTTTGCTTTATATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTAATTAC-AGTTTGACTCTGAAAGTTT-AGTTGCTTTTGTGAGTCATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365657" ref_strand="+" ref_description="SGN-E365657 [cLPT-12-P8]">
      <seq>tccgatttactcgttttctggttatgcttctttgaaagtcgagcggttcattcttcttcatccattatttccagcactgtactttgagattttgttgtgtggagctgaatcgagttgagttttttttttttttttgggaattagggattttggttttggaggcggtgggaaatcgaagggcatcgcatctttaccatgcattcggtgtcgccttttctatttgatctgttgactttacctcaagctgctgcttctttctatggagttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaatttcatcttcctctgttttctttttattctgttgttgctggttcagctgtgatcttgctggttttctgtttctttcgaggggatttttcagctgtttcacatctttttccgagtagttgtagtcgaatctggtggaagttggcgtgattttgctattcatcgacatactgaaagattttagctgctctctttaattgatggccgtttgttctgctaattacaagtgtgactctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28796" stop="26775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28496" g_stop="28006" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="27075" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="556" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E365657" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28496" e_stop="28006"/>
          <exon e_start="27137" e_stop="27075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAA---GCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAA</genome_strand>
        <mrna_strand>TCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAAGTCGAGCGGTTCATTCTTCTTCATCCATTATTTCCAGCACTGTACTTTGAGATTTTGTTGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTT-TTTTGGGAATTAGGGATTTTGGTTTTGGAGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACCATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCCTCTGTTTTCTTTTTATTCTGTTGTTGCTGGTTCAGCTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTGGCGTGATTTTGCTATTCATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTAATTACAAGTGTGACTCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478824" ref_strand="+" ref_description="SGN-E478824 [cSTD-7-O19]">
      <seq>tttggtcttccgttgaattcgatggtaatttagggctataataatgatccgatttactcgttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattatttcgatcactgtaatttgagattttgttgtgtagaggtgaatcgaggtttttttttttttggaattaggggttttggttttggtggcggtggcggtgggaaatcgaagggcatcgcatccttacgatgcattcggtgtcgccttttgtattggatctgttgactttacctcaagctgcttctttctatggcgttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaattcatcttcgnctgtttattttttgttctgcgttgctgtttcagttgctatctgctggttttctgtttgtttcgagggatttttcagctatatcagatctttttccgagtagttgtagccgaatctggtggaaatttgcgtgattttgctttatatcgacatactgaaagatctttgctgctctctttaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28843" stop="26815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28543" g_stop="28006" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="27115" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="554" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E478824" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28543" e_stop="28006"/>
          <exon e_start="27137" e_stop="27115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGA-GGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTG</genome_strand>
        <mrna_strand>TTTGGTCTTCCGTTGAATTCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTATTTCGATCACTGTAATTTGAGATTTTGTTGTGTAGAGGTGAATCGAG--G-TTTTTTTTTTTTTGGAATTAGGGGTTTTGG-TTTTGGTGGCGGTGGCGGTGGGAAATCGAAGGGCATCGCATCCTTACGATGCATTCGGTGTCGCCTTTTGTATTGGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGCGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAA-TTCATCTTCGNCTGTTTATTTTTTGTTCTG-CGTTGCTGTTTCAGTTGCTATC-TGCTGGTTTTCTGTTTGTTTCGA-GGGATTTTTCAGCTATATCAGATCTTTTTCCGAGTAGTTGTAGCCGAATCTGGTGGAAATTTGCGTGATTTTGCTTTATATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGCTGCTCTCTTTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417774" ref_strand="+" ref_description="SGN-E417774 [STM-26-G5]">
      <seq>ccgatttacctcgttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattatttcgatcactgtaatttgagattttgttgtgtggaggtgaatcgagttttttttttttgggaattagggattttggttttggtggcggtgggaaatcgaagggcatcgcatccttacgatgcattcggtgtcgccttttctattggatctgttgactttacctcaagctgcttctttctatggcgttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaattcatcttcgtctgtttattttttgttctgcgttgctgtttcagttgctatctgctggttttctgtttgtttcgagggatttttcagctatatcagatctttttccgagtagttgtagccgaatctggtggaaatttgcgtgattttgctttatatcgacatactgaaagatctttgctgctctctttaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28795" stop="26815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28495" g_stop="28006" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27137" g_stop="27115" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="500" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E417774" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28495" e_stop="28006"/>
          <exon e_start="27137" e_stop="27115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTTA-CTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAGGTAATGATTTGTGATTTGATTGATTTTTGCAATTATAGGATCAGGTTGTTAATATAAATTACATAACATCTGTTTAGGGTAAAAATAATTTATCTTGCTTCGATCTATGTCTAGATAATGCATAAAGTTCAAAATTGAACAGTTGTAGTAACGTTTGGATTCTGTGATTGCTAATTCTTGTAATGATGTACTTGTTGTGGTGATTGGAAATTCGTACTTAAGCTTTTAAGGCATTACTTATAGGCAGGGTGCAATATTTGCCTGAAAGATATATTGTTAATACCACAAGTAGGGTCTCGGGGGATGGCGTAGGATGCATATATACTTAACCCTTATTCTTGTGGGGTAAAGAGGTTGTTTCCGATAAATACTTGGTTTAAAAAGTATGTAAGCAAAGCAGGATTGAAAGGAAATTGACGGCAAAAAAAAAAAAGCTAGATGAACAATGCAAACTAAGAATATGTAGTAGTGAGAATTGAAGAATAAGATATGATACAAATACTAAGAGGAGACTCGCCCCCTGCCTCTCCCACATAACAGTGCAACAGCACTCGGCTACCTATTACCCTTGTCCTTGACCCCATACCTTCCTATTTGGAAGTAATTTGTGTGATGTGCAGAATCCCTATTTACTAATGTTATGAGAATCAATACGCTTTTCTTTGACTTTAGAATTGCTTCTTTGTCGTGATAGATGGATTATAACTTGAAGGATAAAATATTCATTGATAACTTTGAGATGACTGGTTAAGTTCAAAGTGCAATTAATTATCCACGAAGTTCAGTTGTATAACTGTAACGTCTTTTTTCTTTTCTAACAAATGTTGCTTCTTGTTTGTGCTGAGACCACGTGTGCATGTTTGTGCAGATTTTTGCTGCTCTCTTTAATTG</genome_strand>
        <mrna_strand>CCGATTTACCTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTATTTCGATCACTGTAATTTGAGATTTTGTTGTGTGGAGGTGAATC-----GAGTTTTTTTTTTTT-----GGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCCTTACGATGCATTCGGTGTCGCCTTTTCTATTGGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGCGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAA-TTCATCTTCGTCTGTTTATTTTTTGTTCTG-CGTTGCTGTTTCAGTTGCTATC-TGCTGGTTTTCTGTTTGTTTCGA-GGGATTTTTCAGCTATATCAGATCTTTTTCCGAGTAGTTGTAGCCGAATCTGGTGGAAATTTGCGTGATTTTGCTTTATATCGACATACTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGCTGCTCTCTTTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210164" ref_strand="+" ref_description="SGN-E210164 [cLEC-40-L18]">
      <seq>tttggtcttccgttgaaatcgatggtaatttagggctataataatgatccgatttactcgttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattgtttcgatcactgtactttgagattttgtggtgtggagctgaatcgagttgagttttttttttttgggaggggaattagggattttggttttggtggcggtgggaaatcgaagggcatcgcatctttacgatgcattcggtgtcgccttttctatttgatctgttgactttacctcaagctgcttctttctatggagttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaatttcatcttcgtctgttttctttttcttctgttgttgctgtttcagttgtgatcttgctggttttctgtttctttcgaggggatttttcagctgtttcacatctttttccgagtagttgtagtcgaatctggtggaagtttgcgtgattttgctatacatcgacatactgaaagatttttgctgctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28843" stop="27698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28543" g_stop="28006" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E210164" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28543" e_stop="28006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAG</genome_strand>
        <mrna_strand>TTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476010" ref_strand="+" ref_description="SGN-E476010 [cSTB-43-E3]">
      <seq>gttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattatttcgatcactgtaatttgagattttgttgtgtggaggtgaatcgaggtttgtttttgggaattagggattttggttttggtggcggtggaaaatcgaagggcatcgcagccttacgatgcattcggtgtcgccttttctattggatctgttgactttacctcaagctgcttctttctatggcgttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaattcatcttcgtctgtttattttttgttctgcgttgctgtttcagttgctatcgtgctggttttctgtttgtttggagggatttttcagctatttcagatctttttccaagtagttgtagccgaatctggtggaaatttgcgtgattttgctttatatcgacatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28784" stop="27710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28484" g_stop="28010" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E476010" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28484" e_stop="28010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTG</genome_strand>
        <mrna_strand>GTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTATTTCGATCACTGTAATTTGAGATTTTGTTGTGTGGAGGTGAATCGA---G-G---TTTGTTTTT-----GGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGAAAATCGAAGGGCATCGCAGCCTTACGATGCATTCGGTGTCGCCTTTTCTATTGGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGCGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAA-TTCATCTTCGTCTGTTTATTTTTTGTTCTG-CGTTGCTGTTTCAGTTGCTATCGTGCTGGTTTTCTGTTTGTTTGGA-GGGATTTTTCAGCTATTTCAGATCTTTTTCCAAGTAGTTGTAGCCGAATCTGGTGGAAATTTGCGTGATTTTGCTTTATATCGACATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257313" ref_strand="+" ref_description="SGN-E257313 [cLEG-46-F10]">
      <seq>tgaaatcgatggtaatttagggctataataatgatccgatttactcgttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattgtttcgatcactgtactttgagattttgtggtgtggagctgaatcgagttgagtttttttttttttgggaggggaattagggattttggttttggtggcggtgggaaatcgaagggcatcgcatctttacgatgcattcggtgtcgccttttctatttgatctgttgactttacctcaagctgcttctttctatggagttttgtgttctcatcgtttgaagccttggcgtaatagttttagttaacgtttaatttcatcttcggctgctttctttttcttctgttggtgctgtttcagttgtgatcttgctggatttctgtttctttcgaggggatttttcagctgtttcacatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28830" stop="27773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28530" g_stop="28073" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E257313" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28530" e_stop="28073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAG-TTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTT</genome_strand>
        <mrna_strand>TGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGGCTGCTTTCTTTTTCTTCTGTTGGTGCTGTTTCAGTTGTGATCTTGCTGGATTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576054" ref_strand="+" ref_description="SGN-E576054 [59212]">
      <seq>tcggcacgagggttttttggtcttccgttgaattcgatggtaatttagggctataataatgatccgatttactcgttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattatttcgatcactgtaatttgagattttgttgtgtggaggtgaatcgaggttttatttttggaattagggattttggttttggtggcggtgggaaatcgaagggcatcgcatccctacgatgcattcggtgtcgccttttgtattggatctgttgactttacctcaagctgcttctttctatggcgttttgtgttctcatcgctttgaagccttggcgtaatagttttagttaacgttgtaattcatcttcgtctgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28847" stop="27862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28558" g_stop="28162" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E576054" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28558" e_stop="28162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCAATTTCGTGTTTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCG-TTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTT</genome_strand>
        <mrna_strand>TCGGCACGAGGGTTTTTTGGTCTTCCGTTGAATTCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTATTTCGATCACTGTAATTTGAGATTTTGTTGTGTGGAGGTGAATCGA---G-G--TTTTATTTTT------GGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCCCTACGATGCATTCGGTGTCGCCTTTTGTATTGGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGCGTTTTGTGTTCTCATCGCTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTGTAATTCATCTTCGTCTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469976" ref_strand="+" ref_description="SGN-E469976 [cSTB-16-G11]">
      <seq>cgagggagaactagtctcgagttttcattttttttaaccgtattgaataccaccctataaatataaatatttgtctttttctcccacatctccccaatttcagttttttggtcttccgttgaattcgatggtaatttagggctataataatgatccgatttactcgttttctggttatgcttctttgaaattcgagcaattcaatcttcttcatccattatttcgatcactgtaatttgagattttgttgtgtggaggtgaatcgaggtttttattttttggaattagggattttggttttggtggcggtgggaaatcgaagggcatcgcatccctacgatgcattcggtgtcgccttttgtattggatctgttgactttacctcaagctgcttctttctatggcgttttgtgttctcatcgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="28931" stop="27913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28598" g_stop="28213" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="427" r_length="377" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E469976" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28598" e_stop="28213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTATAAATATAAATATTAGTCTCTTTCTCACATATTCCCCCAATTTC-GTGTTTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGA</genome_strand>
        <mrna_strand>CACCCTATAAATATAAATATTTGTCTTTTTCTCCCACATCTCCCCAATTTCAGTTTTTTGGTCTTCCGTTGAATTCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTATTTCGATCACTGTAATTTGAGATTTTGTTGTGTGGAGGTGAATCGA---G-GTTTTTATTTTTT------GGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCCCTACGATGCATTCGGTGTCGCCTTTTGTATTGGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGCGTTTTGTGTTCTCATCGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719891" ref_strand="+" ref_description="SGN-E719891 [FC09AG01]">
      <seq>gatcataaatcaattccaaacgaaagcaatacaagtaattcattgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttaaaaannnnnnnnnnnnnnnaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33986" stop="32430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33687" g_stop="33409" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32730" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="737" r_length="458" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32729" i_stop="32435" i_length="295">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32434" g_stop="32430" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="742" r_length="5" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="754" polyA_stop="780"/>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E719891" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33687" e_stop="33409"/>
          <exon e_start="33187" e_stop="32730"/>
          <exon e_start="32434" e_stop="32430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATAAATCAATTCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAATTTCTTGTTTCTGTAGTGAAGTTTTGGTCCTGTGATGCCTGTGGATTGATGGTAGTTGAGTAGTTGACAAAAGTTCTTGTTTTTACTGTCATAGTGTCATTTCTTAGTTAATCAGTCACACAGTCTGAAAATTGATTAGTGATGGGCTTGAGGGCATAAGTTTCCTGTTCCAGCTAATCCCCGTTGAATCGAGGATTGTCATGAATTAAATAAGATTAGTTATGGGAATATATATAGCTATCTTTTTGTTGGATTTTGGGGAGTTGAAATGCTCTCTTGTGGTAGGTAGT</genome_strand>
        <mrna_strand>GATCATAAATCAATTCCAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTAAAA.......................................................................................................................................................................................................................................................................................................ANNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346538" ref_strand="+" ref_description="SGN-E346538 [cTOF-28-O17]">
      <seq>tggggttcaatttttttgaggtagaaaatggagatgaagggtgcctggaggaaagaaaaggtggtggtccaaagatgaaaggcagttaccaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatggtatgtaggtttggtatctaatttctgcttgnttgtgtagggggcttataagccttaggaacaatgtacttgttttaatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttataagtgaaggaaatttcttgnntnctgtagtgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33930" stop="32400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33630" g_stop="33409" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32696" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="722" r_length="496" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E346538" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33630" e_stop="33409"/>
          <exon e_start="33187" e_stop="32696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTG-CTGGAGG-AAGAAAAGGTGGTGGTCCAAAGAAG-AAGGCAGTTA-CAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAAT-GTATGTAGGTTTGGTATCTAATTTCTGCTTG-TTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTT-ATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAATTTCTTG-TTTCTGTAGTGAAGTTT</genome_strand>
        <mrna_strand>TGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGATGAAGGGTGCCTGGAGGAAAGAAAAGGTGGTGGTCCAAAGATGAAAGGCAGTTACCAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGGTATGTAGGTTTGGTATCTAATTTCTGCTTGNTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTAATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAATTTCTTGNNTNCTGTAGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229659" ref_strand="+" ref_description="SGN-E229659 [cLEL-4-N6](-)">
      <seq>aaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttataagtgaaggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33431" stop="32420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33131" g_stop="32713" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E229659" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33131" e_stop="32713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAATTTCTTG</genome_strand>
        <mrna_strand>AAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229514" ref_strand="+" ref_description="SGN-E229514 [cLEL-4-N6](-)">
      <seq>tctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttattagcctttaggaacaatgtccttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttataagtgaaggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33383" stop="32420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33083" g_stop="32713" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E229514" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33083" e_stop="32713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCC-TTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAATTTCTTG</genome_strand>
        <mrna_strand>TCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATTAGCCTTTAGGAACAATGTCCTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724162" ref_strand="+" ref_description="SGN-E724162 [FC23BA05]">
      <seq>gggcgattggcggccaatcggccgaattgagctcactgtaaccctttttcatatcataaatcaattcaaaacgaaagcaatacacgtaattcattgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaaaaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttataagtganggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33991" stop="32420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33707" g_stop="33409" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="330" r_length="299" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32716" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="802" r_length="472" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E724162" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33707" e_stop="33409"/>
          <exon e_start="33187" e_stop="32716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTGTAACTCAAATTCATATCATAAATCAATTCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAATTTC</genome_strand>
        <mrna_strand>CTCACTGTAACCCTTTTTCATATCATAAATCAATTCAAAACGAAAGCAATACACGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAAAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGANGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347908" ref_strand="+" ref_description="SGN-E347908 [cTOF-31-I24]">
      <seq>ttgaaattcctcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgntatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttataagtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33945" stop="32420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33645" g_stop="33409" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32716" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="710" r_length="473" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E347908" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33645" e_stop="33409"/>
          <exon e_start="33187" e_stop="32716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATG-TATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAATTTC</genome_strand>
        <mrna_strand>TTGAAATTCCTCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGNTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341738" ref_strand="+" ref_description="SGN-E341738 [cTOF-9-P22]">
      <seq>aattcattgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatggtatgtaggtttggtatctaatttcntgcttgttgtgtanggggcttataagccttangaacaatgtacttgttttatngttttgtaaaacaaatattttgcagttttatcaaatatcacttcaatggttnataagtgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33951" stop="32420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33651" g_stop="33409" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32718" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="717" r_length="474" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E341738" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33651" e_stop="33409"/>
          <exon e_start="33187" e_stop="32718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAAT-GTATGTAGGTTTGGTATCTAATTTC-TGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTAT-GTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTT-ATAAGTGAAGGAAATT</genome_strand>
        <mrna_strand>AATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGGTATGTAGGTTTGGTATCTAATTTCNTGCTTGTTGTGTANGGGGCTTATAAGCCTTANGAACAATGTACTTGTTTTATNGTTTTGTAAAACAAATATTTTGCAGTTTTATCAAATATCACTTCAATGGTTNATAAGTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348162" ref_strand="+" ref_description="SGN-E348162 [cTOF-27-D11]">
      <seq>ttcattgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctngttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttataagtgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33949" stop="32420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33649" g_stop="33409" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32719" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="711" r_length="470" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E348162" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33649" e_stop="33409"/>
          <exon e_start="33187" e_stop="32719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCT-GTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAAT</genome_strand>
        <mrna_strand>TTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTNGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738549" ref_strand="+" ref_description="SGN-E738549 [LC14AD07]">
      <seq>gaattggtaggtctttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33806" stop="32430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33506" g_stop="33409" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32719" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="567" r_length="469" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E738549" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33506" e_stop="33409"/>
          <exon e_start="33187" e_stop="32719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAAT</genome_strand>
        <mrna_strand>GAATTGGTAGGTCTTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738115" ref_strand="+" ref_description="SGN-E738115 [LC12BG07]">
      <seq>gaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33806" stop="32430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33506" g_stop="33409" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32719" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="567" r_length="469" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E738115" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33506" e_stop="33409"/>
          <exon e_start="33187" e_stop="32719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAAT</genome_strand>
        <mrna_strand>GAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738744" ref_strand="+" ref_description="SGN-E738744 [LC14DD05]">
      <seq>gaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33806" stop="32430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33506" g_stop="33409" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32719" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="567" r_length="469" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E738744" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33506" e_stop="33409"/>
          <exon e_start="33187" e_stop="32719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAAT</genome_strand>
        <mrna_strand>GAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725010" ref_strand="+" ref_description="SGN-E725010 [FC25DC03]">
      <seq>tagggcgattggcggccaatcggccgaattgatatcataaatcaattcaaaacgaaagcaatacaagtaattcattgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaaaaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttatnggtgaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33995" stop="32420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33693" g_stop="33409" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="311" r_length="285" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32721" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="778" r_length="467" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="779" polyA_stop="798"/>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E725010" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33693" e_stop="33409"/>
          <exon e_start="33187" e_stop="32721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCATATCATAAATCAATTCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAA</genome_strand>
        <mrna_strand>AATTGATATCATAAATCAATTCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAAAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATNGGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719523" ref_strand="+" ref_description="SGN-E719523 [FC08AE02]">
      <seq>gggcgattggcggccaatcggccgaattgatcataaatcaattcaaaacgaaagcaatacaagtaattcattgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttataagtgaaaaaaaaaaannnaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33986" stop="32420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33686" g_stop="33409" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="307" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32721" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="774" r_length="467" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="783" polyA_stop="821"/>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E719523" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33686" e_stop="33409"/>
          <exon e_start="33187" e_stop="32721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATAAATCAATTCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAA</genome_strand>
        <mrna_strand>ATCATAAATCAATTCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694414" ref_strand="+" ref_description="SGN-E694414 [LH_Ea03N20](-)">
      <seq>aagcaatacaagttattcattgaaatttatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaagtcagtcacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattttgaacgagttggaagtggtgcccctgtttatcttgctgctgtgcttgagtatcttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatttggtgtaaccattgctcatggaggtgtttttcctaacatcaatccaatttttttgcctaagaaatttgataaagttggaaaagaacctgctaaatccccatttaaggctaccaaatccccccgaaaggcttaaatttgtgaagaacaaccctttaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatttaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtactaaggttatgttttgtaaaacaaatcatttgcagtttattcaaagggcacttcaatggttataagtgaaggaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33964" stop="32420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33664" g_stop="33409" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32721" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="723" r_length="467" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="743"/>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E694414" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33664" e_stop="33409"/>
          <exon e_start="33187" e_stop="32721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAA</genome_strand>
        <mrna_strand>AAGCAATACAAGTTATTCATTGAAATTTATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGTCAGTCACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTTTGAACGAGTTGGAAGTGGTGCCCCTGTTTATCTTGCTGCTGTGCTTGAGTATCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATTTGGTGTAACCATTGCTCATGGAGGTGTTTTTCCTAACATCAATCCAATTTTTTTGCCTAAGAAATTTGATAAAGTTGGAAAAGAACCTGCTAAATCCCCATTTAAGGCTACCAAATCCCCCCGAAAGGCTTAAATTTGTGAAGAACAACCCTTTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATTTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTAAGGTTATGTTTTGTAAAACAAATCATTTGCAGTTTATTCAAAGGGCACTTCAATGGTTATAAGTGAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716617" ref_strand="+" ref_description="SGN-E716617 [FB17CC09]">
      <seq>cgataaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttataagtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33878" stop="32420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33579" g_stop="33409" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32721" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="638" r_length="467" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="639" polyA_stop="649"/>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E716617" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33579" e_stop="33409"/>
          <exon e_start="33187" e_stop="32721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAA</genome_strand>
        <mrna_strand>CGATAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266003" ref_strand="-" ref_description="SGN-E266003 [cLEI-6-D20]">
      <seq>aaaaagggtcgttattttgaacgagttggaagtggtgcacctgtttatcttgctgttgggcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagatatcaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgataaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttataagtgaaaaaacacaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33789" stop="32421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33489" g_stop="33409" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32721" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="548" r_length="467" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="562"/>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E266003" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266003" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33489" e_stop="33409"/>
          <exon e_start="33187" e_stop="32721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAA</genome_strand>
        <mrna_strand>AAAAAGGGTCGTTATTTTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGTTGGGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATATCAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGATAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220947" ref_strand="+" ref_description="SGN-E220947 [cLEL-22-E9](-)">
      <seq>tgaaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttataagtgaaggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33473" stop="32420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33173" g_stop="32721" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="471"/>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E220947" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33173" e_stop="32721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGG-AAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAA</genome_strand>
        <mrna_strand>TGAAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322988" ref_strand="+" ref_description="SGN-E322988 [cTOB-30-L21]">
      <seq>ttgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtanggggcttataagccttangaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33945" stop="32430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33645" g_stop="33409" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32724" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="701" r_length="464" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E322988" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33645" e_stop="33409"/>
          <exon e_start="33187" e_stop="32724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAG</genome_strand>
        <mrna_strand>TTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTANGGGGCTTATAAGCCTTANGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252034" ref_strand="+" ref_description="SGN-E252034 [cLEG-8-M12]">
      <seq>tttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33916" stop="32430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33616" g_stop="33409" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32724" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="672" r_length="464" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E252034" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33616" e_stop="33409"/>
          <exon e_start="33187" e_stop="32724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAG</genome_strand>
        <mrna_strand>TTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690574" ref_strand="+" ref_description="SGN-E690574 [LH_Ea03N20]">
      <seq>cagtaagcaatacaagttattcattgaaatttatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaagtcagtcacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtatcttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagtttaatcatgtatcacttcaatggttataagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33966" stop="32425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33668" g_stop="33409" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32725" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="723" r_length="463" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E690574" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33668" e_stop="33409"/>
          <exon e_start="33187" e_stop="32725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAA</genome_strand>
        <mrna_strand>CAGTAAGCAATACAAGTTATTCATTGAAATTTATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGTCAGTCACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTATCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTAATCATGTATCACTTCAATGGTTATAAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243061" ref_strand="+" ref_description="SGN-E243061 [cLEF-1-H19]">
      <seq>ttcctaacttcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcacttcaatggttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33348" stop="32430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33048" g_stop="32725" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E243061" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33048" e_stop="32725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAA</genome_strand>
        <mrna_strand>TTCCTAACTTCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555482" ref_strand="+" ref_description="SGN-E555482 [cTSC-4-C19]">
      <seq>tcaaaacgaaagcaatacaagtaattcattgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33973" stop="32443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33673" g_stop="33409" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32743" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="710" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E555482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33673" e_stop="33409"/>
          <exon e_start="33187" e_stop="32743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACT</genome_strand>
        <mrna_strand>TCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723428" ref_strand="+" ref_description="SGN-E723428 [FC20BH01]">
      <seq>gggcgattggcggccaatcggccgaattgataaatcaattcaaaccgaaagcaatacaagtaattcattgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttaggaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagttttatcaaatatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33988" stop="32444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33683" g_stop="33409" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="304" r_length="275" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32744" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="748" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E723428" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33683" e_stop="33409"/>
          <exon e_start="33187" e_stop="32744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATCAATTCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCAC</genome_strand>
        <mrna_strand>ATAAATCAATTCAAACCGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340925" ref_strand="+" ref_description="SGN-E340925 [cTOF-5-O23]">
      <seq>gaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttangaacaatgtacttngtttatgttttgtaaaacgaatcatttgcagttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33943" stop="32450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33643" g_stop="33409" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32749" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="674" r_length="439" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E340925" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33643" e_stop="33409"/>
          <exon e_start="33187" e_stop="32749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAAT</genome_strand>
        <mrna_strand>GAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTANGAACAATGTACTTNGTTTATGTTTTGTAAAACGAATCATTTGCAGTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322042" ref_strand="+" ref_description="SGN-E322042 [cTOB-29-A7]">
      <seq>ggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttataagccttangaacaatgtacttgttttatgttttgtaaaacaaatcatttgcagtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33870" stop="32455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33570" g_stop="33409" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32755" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="595" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E322042" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33570" e_stop="33409"/>
          <exon e_start="33187" e_stop="32755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTA</genome_strand>
        <mrna_strand>GGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTANGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350247" ref_strand="+" ref_description="SGN-E350247 [cTOS-4-J5]">
      <seq>aaagcaatacaagtaattcattgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgtangtttggtatctaatttctgcttgttgtgtanggggcttataagccttaggaaaatgtacttgttttatgttttgtaaaacaatcttttgcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33965" stop="32457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33665" g_stop="33409" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32757" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="686" r_length="429" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E350247" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33665" e_stop="33409"/>
          <exon e_start="33187" e_stop="32757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTT</genome_strand>
        <mrna_strand>AAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTANGTTTGGTATCTAATTTCTGCTTGTTGTGTANGGGGCTTATAAGCCTTAGGAA-AATGTACTTGTTTTATGTTTTGTAAAAC-AATCTTTTGCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347117" ref_strand="+" ref_description="SGN-E347117 [cTOF-25-P8]">
      <seq>gaaagcaatacaagtaattcattgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattttatgaacttgtgtttggttcaaataaatctgttaatgtatgttaggttnggaatctaaattctgcttgttgtgtagggggcttataagccttaggaacaatggacttgtttaaatgtttggaaaaaaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33966" stop="32466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33666" g_stop="33409" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32766" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="680" r_length="422" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E347117" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33666" e_stop="33409"/>
          <exon e_start="33187" e_stop="32766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATG-TAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCAT</genome_strand>
        <mrna_strand>GAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTTAGGTTNGGAATCTAAATTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGGACTTGTTTAAATGTTTGGAAAA-AAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279415" ref_strand="+" ref_description="SGN-E279415 [cLER-11-L22]">
      <seq>tttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaatttgtgaagaacaacactctaccaaagttgcatgattttaggattntatgaacttgtgtttggttcaaataaatctgttaatgtatgtaggtttggtatctaatttctgcttgttgtgtagggggcttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33916" stop="32513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33616" g_stop="33409" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32813" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="583" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E279415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33616" e_stop="33409"/>
          <exon e_start="33187" e_stop="32813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATA</genome_strand>
        <mrna_strand>TTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTNTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323829" ref_strand="+" ref_description="SGN-E323829 [cTOC-5-F3]">
      <seq>tgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagctgtgaggaatgatgaagaacttggaaagcttctatctggtgtaaccattgctcatggaggtgttcttcctaacatcaatccaattcttctgcctaagaaatctgataaagttggaaaagaacctgctaaatcaccatctaaggctaccaaatcaccacgaaaggcttaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33944" stop="32641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33644" g_stop="33409" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="32941" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="483" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E323829" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33644" e_stop="33409"/>
          <exon e_start="33187" e_stop="32941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTT</genome_strand>
        <mrna_strand>TGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391388" ref_strand="+" ref_description="SGN-E391388 [TUS-48-F17]">
      <seq>tcaaaacgaaagcaatacaagtaattcattgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctggattacagtttccggtgggtagaattggtaggtatttgaaaaagggtcgttattctgaacgagttggaagtggtgcacctgtttatcttgctgctgtgcttgagtaccttgctgctgaggttttggaattggctggaaatgcagcgagagataacaagaagaacagaataataccaaggcatgttttgttagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33973" stop="32813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33673" g_stop="33409" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33187" g_stop="33113" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="340" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E391388" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33673" e_stop="33409"/>
          <exon e_start="33187" e_stop="33113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAGGTATATTTCCCTAACTCTTGAATTTTTAGTGTCTGGGGTTTGTTTGTTGGCTAAAAAATTGAATTTTTAGTATATGGGGTTTGTTTGTTAGCTAAAAATTGAATTTTTTTTTTGTATCTGGGGTTTAGGGTTATTTTGTAGGTCAAGTGTGGGATCTGGAAAATTTTACCTTTAGCTCATGTTTGATGATAAATTTTTGAAATTGTCTTCTGTGTGGGTAGGTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCT</genome_strand>
        <mrna_strand>TCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG.............................................................................................................................................................................................................................GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237819" ref_strand="+" ref_description="SGN-E237819 [cLED-18-O16]">
      <seq>caaaacgattgcaatacaagtaattcattgaaattcatcatttggggttcaatttttttgaggtagaaaatggagaagaagggtgctggaggaagaaaaggtggtggtccaaagaagaaggcagttacaagatctgttaaggctgtattacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0096M01-7YN7a/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLf0096M01.1" temp_strand="-" temp_description="C09SLf0096M01.1  AC233066.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0096M01 upload_account_name:spain (1 - 34213)">
        <position start="33972" stop="33220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33672" g_stop="33520" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0096M01.1" gen_strand="-" ref_id="SGN-E237819" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0096M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33672" e_stop="33520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAG</genome_strand>
        <mrna_strand>CAAAACGATTGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGTATTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>72</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1643" PGL_stop="923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1643" e_stop="923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="1643" e_stop="923" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1643" stop="923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACATCTCTTTCTTATTGAGCCTTGAAGCCCTTCTTGAAATCTCTTTGAATTTTTCAAATACAATCAAAATGGTGAGTTAACTTTCAACCCCTTTTGCTTTTCTTTGCATTTTAAATTTACTTTTGATTACTTCTTGTTTTGTTAATTCTTGATGTGTGTGTGTTTTAGTATGGAGATTTTGTGAATGGGTTTAGTTTTTGATTGATCTGATTAGTTAATCTATGTGGGTTTTGGTTAAAATAGTGATCTTTATGGGAATTTCACTGTTGGTTGTCTTCTTGTTTTGCTTTGTTTTTCCTGCTGTGTGTGTGTGTGTTAGTAGAGAGATTTTGCGAATGGGTTTAGTGTTTGCTTGATCTGATTGGATAATCTATATGGGTATTGGCTAAAAAACTGATCTTTATGGGAATTTTACTGTAGGTTGTCTTCTTGTTTTGCTTTGTTTTTCCTGTTGTGTGTGTGTGTGTTAGTAGAGAGATTTTGTGAGTGGGTTTAGTGTTTGATTGAATCTGATTAGATAATCTATATGAGTGTTGGCTAAAAAAGTGATCTTTATGGAATTTACACTGTTGATTTCTTCTTGTTTTGCTTTGTTTTTCTTAGTGTGTGTGTTAGTAAAAGCATTTTGTGAATGGGTTTAGTTGTTTATTTGTGATTGTGATTGATATGATAAGATTATCTACATGGGTATTGGCTAAAAACTGATCTCTATTGAAA</gDNA_template>
            <first_frame> K  N  I  S  F  L  L  S  L  E  A  L  L  E  I  S  L  N  F  S  N  T  I  K  M  V  S  *  L  S  T  P  F  A  F  L  C  I  L  N  L  L  L  I  T  S  C  F  V  N  S  *  C  V  C  V  L  V  W  R  F  C  E  W  V  *  F  L  I  D  L  I  S  *  S  M  W  V  L  V  K  I  V  I  F  M  G  I  S  L  L  V  V  F  L  F  C  F  V  F  P  A  V  C  V  C  V  S  R  E  I  L  R  M  G  L  V  F  A  *  S  D  W  I  I  Y  M  G  I  G  *  K  T  D  L  Y  G  N  F  T  V  G  C  L  L  V  L  L  C  F  S  C  C  V  C  V  C  *  *  R  D  F  V  S  G  F  S  V  *  L  N  L  I  R  *  S  I  *  V  L  A  K  K  V  I  F  M  E  F  T  L  L  I  S  S  C  F  A  L  F  F  L  V  C  V  L  V  K  A  F  C  E  W  V  *  L  F  I  C  D  C  D  *  Y  D  K  I  I  Y  M  G  I  G  *  K  L  I  S  I  E  </first_frame>
            <second_frame>  K  T  S  L  S  Y  *  A  L  K  P  F  L  K  S  L  *  I  F  Q  I  Q  S  K  W  *  V  N  F  Q  P  L  L  L  F  F  A  F  *  I  Y  F  *  L  L  L  V  L  L  I  L  D  V  C  V  F  *  Y  G  D  F  V  N  G  F  S  F  *  L  I  *  L  V  N  L  C  G  F  W  L  K  *  *  S  L  W  E  F  H  C  W  L  S  S  C  F  A  L  F  F  L  L  C  V  C  V  L  V  E  R  F  C  E  W  V  *  C  L  L  D  L  I  G  *  S  I  W  V  L  A  K  K  L  I  F  M  G  I  L  L  *  V  V  F  L  F  C  F  V  F  P  V  V  C  V  C  V  S  R  E  I  L  *  V  G  L  V  F  D  *  I  *  L  D  N  L  Y  E  C  W  L  K  K  *  S  L  W  N  L  H  C  *  F  L  L  V  L  L  C  F  S  *  C  V  C  *  *  K  H  F  V  N  G  F  S  C  L  F  V  I  V  I  D  M  I  R  L  S  T  W  V  L  A  K  N  *  S  L  L  K </second_frame>
            <third_frame>   K  H  L  F  L  I  E  P  *  S  P  S  *  N  L  F  E  F  F  K  Y  N  Q  N  G  E  L  T  F  N  P  F  C  F  S  L  H  F  K  F  T  F  D  Y  F  L  F  C  *  F  L  M  C  V  C  F  S  M  E  I  L  *  M  G  L  V  F  D  *  S  D  *  L  I  Y  V  G  F  G  *  N  S  D  L  Y  G  N  F  T  V  G  C  L  L  V  L  L  C  F  S  C  C  V  C  V  C  *  *  R  D  F  A  N  G  F  S  V  C  L  I  *  L  D  N  L  Y  G  Y  W  L  K  N  *  S  L  W  E  F  Y  C  R  L  S  S  C  F  A  L  F  F  L  L  C  V  C  V  L  V  E  R  F  C  E  W  V  *  C  L  I  E  S  D  *  I  I  Y  M  S  V  G  *  K  S  D  L  Y  G  I  Y  T  V  D  F  F  L  F  C  F  V  F  L  S  V  C  V  S  K  S  I  L  *  M  G  L  V  V  Y  L  *  L  *  L  I  *  *  D  Y  L  H  G  Y  W  L  K  T  D  L  Y  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLf0096M01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11895" PGL_stop="12307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11895" e_stop="12307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11895" e_stop="12307" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11895" stop="12307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11895" stop="12200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCGAAAAAATGTCTTCAGAAAGGGCAAATCGCCATCAAAGGAGGCCATCTCAGAGCTTCAATTTTGTTTTGCCGGAGAACATTTCGTTAGCTGATCCAGTGGACGGCGATTCCGACAATGGCGCCGGTGCCGGCGAGCAAAATAAGGTTGTTACGCCGCCGCCTGCAAATTCGAAATCTGGACTCGGCCGTACTGCTAGCGGAGTTTCATTGCCGCCGCTGCCGGTGGAGATGTCGTCGGAGAAGGAGGGAACGTCACGACGTCAAGGATGAACCTAAGAAATTTTTTTTATGAAGTTGATTTTTTTTTAGTTAATTACTTTGTTTTTTTTGTTTTTTTTGCTTTGTGATCAGTTGATAATCTACCTGAATCTTTTTTATTAATTTTAATTAATAAAAAAGTACTTTTTT</gDNA_template>
            <first_frame> K  S  K  K  C  L  Q  K  G  Q  I  A  I  K  G  G  H  L  R  A  S  I  L  F  C  R  R  T  F  R  *  L  I  Q  W  T  A  I  P  T  M  A  P  V  P  A  S  K  I  R  L  L  R  R  R  L  Q  I  R  N  L  D  S  A  V  L  L  A  E  F  H  C  R  R  C  R  W  R  C  R  R  R  R  R  E  R  H  D  V  K  D  E  P  K  K  F  F  L  *  S  *  F  F  F  S  *  L  L  C  F  F  C  F  F  C  F  V  I  S  *  *  S  T  *  I  F  F  I  N  F  N  *  *  K  S  T  F   </first_frame>
            <second_frame>  N  R  K  N  V  F  R  K  G  K  S  P  S  K  E  A  I  S  E  L  Q  F  C  F  A  G  E  H  F  V  S  *  S  S  G  R  R  F  R  Q  W  R  R  C  R  R  A  K  *  G  C  Y  A  A  A  C  K  F  E  I  W  T  R  P  Y  C  *  R  S  F  I  A  A  A  A  G  G  D  V  V  G  E  G  G  N  V  T  T  S  R  M  N  L  R  N  F  F  Y  E  V  D  F  F  L  V  N  Y  F  V  F  F  V  F  F  A  L  *  S  V  D  N  L  P  E  S  F  L  L  I  L  I  N  K  K  V  L  F  </second_frame>
            <third_frame>   I  E  K  M  S  S  E  R  A  N  R  H  Q  R  R  P  S  Q  S  F  N  F  V  L  P  E  N  I  S  L  A  D  P  V  D  G  D  S  D  N  G  A  G  A  G  E  Q  N  K  V  V  T  P  P  P  A  N  S  K  S  G  L  G  R  T  A  S  G  V  S  L  P  P  L  P  V  E  M  S  S  E  K  E  G  T  S  R  R  Q  G  *  T  *  E  I  F  F  M  K  L  I  F  F  *  L  I  T  L  F  F  L  F  F  L  L  C  D  Q  L  I  I  Y  L  N  L  F  Y  *  F  *  L  I  K  K  Y  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0096M01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11897" stop="12169"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEKMSSERANRHQRRPSQSFNFVLPENISLADPVDGDSDNGAGAGEQNKVVTPPPANSKSGLGRTASGVSLPPLPVEMSSEKEGTSRRQG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0096M01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11988" stop="12191"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIQWTAIPTMAPVPASKIRLLRRRLQIRNLDSAVLLAEFHCRRCRWRCRRRRRERHDVKDEPKKFFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="16422" PGL_stop="20439"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16422" e_stop="16608"/>
            <exon e_start="17086" e_stop="17211"/>
            <exon e_start="18022" e_stop="18145"/>
            <exon e_start="18408" e_stop="18481"/>
            <exon e_start="18959" e_stop="19003"/>
            <exon e_start="19203" e_stop="19253"/>
            <exon e_start="19325" e_stop="19393"/>
            <exon e_start="19587" e_stop="19645"/>
            <exon e_start="19843" e_stop="19912"/>
            <exon e_start="20268" e_stop="20348"/>
            <exon e_start="20424" e_stop="20439"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="0.936"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="16422" e_stop="16608" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="16609" i_stop="17085" i_length="477"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17086" e_stop="17211" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17212" i_stop="18021" i_length="810"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18022" e_stop="18145" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.938">
            <gDNA_intron_boundary i_start="18146" i_stop="18407" i_length="262"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18408" e_stop="18481" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.920" acc_prob="0.939">
            <gDNA_intron_boundary i_start="18482" i_stop="18958" i_length="477"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18959" e_stop="19003" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.893" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19004" i_stop="19202" i_length="199"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19203" e_stop="19253" e_length="51"/>
          </exon>
          <intron i_serial="6" don_prob="0.917" acc_prob="0.955">
            <gDNA_intron_boundary i_start="19254" i_stop="19324" i_length="71"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19325" e_stop="19393" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.853">
            <gDNA_intron_boundary i_start="19394" i_stop="19586" i_length="193"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19587" e_stop="19645" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19646" i_stop="19842" i_length="197"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="19843" e_stop="19912" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="0.986" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19913" i_stop="20267" i_length="355"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="20268" e_stop="20348" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.787" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20349" i_stop="20423" i_length="75"/>
          </intron>
          <exon e_serial="11" e_score="0.875">
            <gDNA_exon_boundary e_start="20424" e_stop="20439" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16422" stop="16608"/>
              <exon start="17086" stop="17211"/>
              <exon start="18022" stop="18145"/>
              <exon start="18408" stop="18481"/>
              <exon start="18959" stop="19003"/>
              <exon start="19203" stop="19253"/>
              <exon start="19325" stop="19393"/>
              <exon start="19587" stop="19614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16467" stop="16608"/>
              <exon start="17086" stop="17211"/>
              <exon start="18022" stop="18145"/>
              <exon start="18408" stop="18481"/>
              <exon start="18959" stop="19003"/>
              <exon start="19203" stop="19253"/>
              <exon start="19325" stop="19393"/>
              <exon start="19587" stop="19625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16474" stop="16608"/>
              <exon start="17086" stop="17211"/>
              <exon start="18022" stop="18145"/>
              <exon start="18408" stop="18481"/>
              <exon start="18959" stop="19003"/>
              <exon start="19203" stop="19209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16583" stop="16608"/>
              <exon start="17086" stop="17211"/>
              <exon start="18022" stop="18145"/>
              <exon start="18408" stop="18481"/>
              <exon start="18959" stop="19003"/>
              <exon start="19203" stop="19253"/>
              <exon start="19325" stop="19393"/>
              <exon start="19587" stop="19645"/>
              <exon start="19843" stop="19912"/>
              <exon start="20268" stop="20333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17120" stop="17211"/>
              <exon start="18022" stop="18145"/>
              <exon start="18408" stop="18481"/>
              <exon start="18959" stop="19003"/>
              <exon start="19203" stop="19253"/>
              <exon start="19325" stop="19393"/>
              <exon start="19587" stop="19645"/>
              <exon start="19843" stop="19912"/>
              <exon start="20268" stop="20348"/>
              <exon start="20424" stop="20439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAATTGAACAATTTTTTTTTCCTCTTTATTTTGTTTTTTTCAGTGTTAATAATTTCACAGATTTATGTTCAATTTATGCACAAAGATTTGAGTTCAAAACTCTTTAGCTGACCAACTCAAACAATGGCTCTTTCTGTTCCTCACTTCATCTCTGTCAGCAGATTTTCAGACCTCAATGGTGTAAAG : GTACGTGGTTCGCCAAGGTGTTTTCGGAGAGATTGTAAAGTATTTACAGTTATATCAATGTCAAAAGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAG : ATTCCTGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAG : GGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACG : GCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACG : GGTGATGCAGGTTATCAAGATGTAATTGAGTGCTCAAGTTCACTAGCTAAG : TTACTTCAACTGAAGCAAGACGAAGTCTTGATCGAATCAACTGGTGTAATTGGTCAAAGAATAAAGAAG : GAAGCACTTCTCAACTCACTCCCACATCTTGTTAAACAGCTTTCACCAACCGTGGAGGG : GGCAAATTCTGCAGCTGTAGCTATAACGACCACTGATCTTGTTAGTAAGAGTGTGGCTGTTGAAACAGAA : GTAAGAGGAACTCGAATCAGAGTTGGGGGCATGGCAAAGGGTTCTGGGATGATTCATCCTAACATGGCAACAATGCTTGGT : GTAGTAACTACAGATG</gDNA_template>
            <first_frame> V  I  E  Q  F  F  F  P  L  Y  F  V  F  F  S  V  N  N  F  T  D  L  C  S  I  Y  A  Q  R  F  E  F  K  T  L  *  L  T  N  S  N  N  G  S  F  C  S  S  L  H  L  C  Q  Q  I  F  R  P  Q  W  C  K   : G  T  W  F  A  K  V  F  S  E  R  L  *  S  I  Y  S  Y  I  N  V  K  R  G  I  K  L  Y  T  S  S  S  Y  I  S  P  *  R  T  M  A  T   : D  S  W  W  C  Y  C  C  K  G  F  Q  S  C  W  D  V  W  W  I  A  C  S  W  R  E  T  *  S  R  T  R  H  L  *  C  R  C  H  I  C  R :   G  I  Y  Y  K  C  C  C  S  C  T  C  T  I  L  *  K  R  T  K  C  I  *  N   : G  S  C  G  I  N  K  C  W  S  S  *  C  S  N   : G  *  C  R  L  S  R  C  N  *  V  L  K  F  T  S  *   : V  T  S  T  E  A  R  R  S  L  D  R  I  N  W  C  N  W  S  K  N  K  E   : G  S  T  S  Q  L  T  P  T  S  C  *  T  A  F  T  N  R  G  G  :  G  K  F  C  S  C  S  Y  N  D  H  *  S  C  *  *  E  C  G  C  *  N  R   : S  K  R  N  S  N  Q  S  W  G  H  G  K  G  F  W  D  D  S  S  *  H  G  N  N  A  W   : C  S  N  Y  R   </first_frame>
            <second_frame>  *  L  N  N  F  F  F  L  F  I  L  F  F  S  V  L  I  I  S  Q  I  Y  V  Q  F  M  H  K  D  L  S  S  K  L  F  S  *  P  T  Q  T  M  A  L  S  V  P  H  F  I  S  V  S  R  F  S  D  L  N  G  V  K  :  V  R  G  S  P  R  C  F  R  R  D  C  K  V  F  T  V  I  S  M  S  K  E  A  S  N  Y  I  P  A  A  P  I  F  L  P  E  G  P  W  Q  Q  :  I  P  G  G  V  T  A  A  K  G  F  K  A  A  G  M  Y  G  G  L  R  A  L  G  E  K  P  D  L  A  L  V  T  C  D  V  D  A  I  S  A   : G  A  F  T  T  N  V  V  A  A  A  P  V  L  Y  C  K  S  A  L  N  A  S  K  T  :  A  R  A  V  L  I  N  A  G  Q  A  N  A  A  T  :  G  D  A  G  Y  Q  D  V  I  E  C  S  S  S  L  A  K  :  L  L  Q  L  K  Q  D  E  V  L  I  E  S  T  G  V  I  G  Q  R  I  K  K  :  E  A  L  L  N  S  L  P  H  L  V  K  Q  L  S  P  T  V  E  G :   A  N  S  A  A  V  A  I  T  T  T  D  L  V  S  K  S  V  A  V  E  T  E  :  V  R  G  T  R  I  R  V  G  G  M  A  K  G  S  G  M  I  H  P  N  M  A  T  M  L  G  :  V  V  T  T  D  </second_frame>
            <third_frame>   N  *  T  I  F  F  S  S  L  F  C  F  F  Q  C  *  *  F  H  R  F  M  F  N  L  C  T  K  I  *  V  Q  N  S  L  A  D  Q  L  K  Q  W  L  F  L  F  L  T  S  S  L  S  A  D  F  Q  T  S  M  V  *  R :   Y  V  V  R  Q  G  V  F  G  E  I  V  K  Y  L  Q  L  Y  Q  C  Q  K  R  H  Q  I  I  Y  Q  Q  L  L  Y  F  S  L  K  D  H  G  N  R :   F  L  V  V  L  L  L  Q  R  V  S  K  L  L  G  C  M  V  D  C  V  L  L  E  R  N  L  I  S  H  S  S  L  V  M  *  M  P  Y  L  Q  :  G  H  L  L  Q  M  L  L  Q  L  H  L  Y  Y  T  V  K  A  H  *  M  H  L  K  R :   L  V  R  Y  *  *  M  L  V  K  L  M  Q  Q  R :   V  M  Q  V  I  K  M  *  L  S  A  Q  V  H  *  L  S :   Y  F  N  *  S  K  T  K  S  *  S  N  Q  L  V  *  L  V  K  E  *  R  R :   K  H  F  S  T  H  S  H  I  L  L  N  S  F  H  Q  P  W  R   : G  Q  I  L  Q  L  *  L  *  R  P  L  I  L  L  V  R  V  W  L  L  K  Q  K :   *  E  E  L  E  S  E  L  G  A  W  Q  R  V  L  G  *  F  I  L  T  W  Q  Q  C  L  V :   *  *  L  Q  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0096M01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16534" stop="16608"/>
                    <exon start="17086" stop="17211"/>
                    <exon start="18022" stop="18145"/>
                    <exon start="18408" stop="18481"/>
                    <exon start="18959" stop="19003"/>
                    <exon start="19203" stop="19253"/>
                    <exon start="19325" stop="19393"/>
                    <exon start="19587" stop="19645"/>
                    <exon start="19843" stop="19912"/>
                    <exon start="20268" stop="20348"/>
                    <exon start="20424" stop="20438"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTQTMALSVPHFISVSRFSDLNGVKVRGSPRCFRRDCKVFTVISMSKEASNYIPAAPIFLPEGPWQQIPGGVTAAKGFKAAGMYGGLRALGEKPDLALVTCDVDAISAGAFTTNVVAAAPVLYCKSALNASKTARAVLINAGQANAATGDAGYQDVIECSSSLAKLLQLKQDEVLIESTGVIGQRIKKEALLNSLPHLVKQLSPTVEGANSAAVAITTTDLVSKSVAVETEVRGTRIRVGGMAKGSGMIHPNMATMLGVVTTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16516" e_stop="16608"/>
            <exon e_start="17080" e_stop="17211"/>
            <exon e_start="18022" e_stop="18145"/>
            <exon e_start="18408" e_stop="18481"/>
            <exon e_start="18959" e_stop="19003"/>
            <exon e_start="19203" e_stop="19253"/>
            <exon e_start="19325" e_stop="19393"/>
            <exon e_start="19587" e_stop="19645"/>
            <exon e_start="19843" e_stop="19912"/>
            <exon e_start="20268" e_stop="20348"/>
            <exon e_start="20424" e_stop="20439"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.946"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.985"/>
          <exon-intron don_prob="0.996" acc_prob="0.938" e_score="0.992"/>
          <exon-intron don_prob="0.920" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.955" e_score="0.980"/>
          <exon-intron don_prob="0.970" acc_prob="0.853" e_score="0.986"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.992" e_score="0.986"/>
          <exon-intron don_prob="0.787" acc_prob="0.000" e_score="0.988"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="16516" e_stop="16608" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16609" i_stop="17079" i_length="471"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="17080" e_stop="17211" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17212" i_stop="18021" i_length="810"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="18022" e_stop="18145" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.938">
            <gDNA_intron_boundary i_start="18146" i_stop="18407" i_length="262"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18408" e_stop="18481" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.920" acc_prob="0.939">
            <gDNA_intron_boundary i_start="18482" i_stop="18958" i_length="477"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18959" e_stop="19003" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.893" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19004" i_stop="19202" i_length="199"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="19203" e_stop="19253" e_length="51"/>
          </exon>
          <intron i_serial="6" don_prob="0.917" acc_prob="0.955">
            <gDNA_intron_boundary i_start="19254" i_stop="19324" i_length="71"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="19325" e_stop="19393" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.853">
            <gDNA_intron_boundary i_start="19394" i_stop="19586" i_length="193"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19587" e_stop="19645" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19646" i_stop="19842" i_length="197"/>
          </intron>
          <exon e_serial="9" e_score="0.986">
            <gDNA_exon_boundary e_start="19843" e_stop="19912" e_length="70"/>
          </exon>
          <intron i_serial="9" don_prob="0.986" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19913" i_stop="20267" i_length="355"/>
          </intron>
          <exon e_serial="10" e_score="0.988">
            <gDNA_exon_boundary e_start="20268" e_stop="20348" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.787" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20349" i_stop="20423" i_length="75"/>
          </intron>
          <exon e_serial="11" e_score="0.875">
            <gDNA_exon_boundary e_start="20424" e_stop="20439" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16516" stop="16608"/>
              <exon start="17080" stop="17211"/>
              <exon start="18022" stop="18145"/>
              <exon start="18408" stop="18481"/>
              <exon start="18959" stop="19003"/>
              <exon start="19203" stop="19253"/>
              <exon start="19325" stop="19343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17120" stop="17211"/>
              <exon start="18022" stop="18145"/>
              <exon start="18408" stop="18481"/>
              <exon start="18959" stop="19003"/>
              <exon start="19203" stop="19253"/>
              <exon start="19325" stop="19393"/>
              <exon start="19587" stop="19645"/>
              <exon start="19843" stop="19912"/>
              <exon start="20268" stop="20348"/>
              <exon start="20424" stop="20439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAACTCTTTAGCTGACCAACTCAAACAATGGCTCTTTCTGTTCCTCACTTCATCTCTGTCAGCAGATTTTCAGACCTCAATGGTGTAAAG : CTGCAGGTACGTGGTTCGCCAAGGTGTTTTCGGAGAGATTGTAAAGTATTTACAGTTATATCAATGTCAAAAGAGGCATCAAATTATATACCAGCAGCTCCTATATTTCTCCCTGAAGGACCATGGCAACAG : ATTCCTGGTGGTGTTACTGCTGCAAAGGGTTTCAAAGCTGCTGGGATGTATGGTGGATTGCGTGCTCTTGGAGAGAAACCTGATCTCGCACTCGTCACTTGTGATGTAGATGCCATATCTGCAG : GGGCATTTACTACAAATGTTGTTGCAGCTGCACCTGTACTATACTGTAAAAGCGCACTAAATGCATCTAAAACG : GCTCGTGCGGTATTAATAAATGCTGGTCAAGCTAATGCAGCAACG : GGTGATGCAGGTTATCAAGATGTAATTGAGTGCTCAAGTTCACTAGCTAAG : TTACTTCAACTGAAGCAAGACGAAGTCTTGATCGAATCAACTGGTGTAATTGGTCAAAGAATAAAGAAG : GAAGCACTTCTCAACTCACTCCCACATCTTGTTAAACAGCTTTCACCAACCGTGGAGGG : GGCAAATTCTGCAGCTGTAGCTATAACGACCACTGATCTTGTTAGTAAGAGTGTGGCTGTTGAAACAGAA : GTAAGAGGAACTCGAATCAGAGTTGGGGGCATGGCAAAGGGTTCTGGGATGATTCATCCTAACATGGCAACAATGCTTGGT : GTAGTAACTACAGATG</gDNA_template>
            <first_frame> S  K  L  F  S  *  P  T  Q  T  M  A  L  S  V  P  H  F  I  S  V  S  R  F  S  D  L  N  G  V  K  :  L  Q  V  R  G  S  P  R  C  F  R  R  D  C  K  V  F  T  V  I  S  M  S  K  E  A  S  N  Y  I  P  A  A  P  I  F  L  P  E  G  P  W  Q  Q  :  I  P  G  G  V  T  A  A  K  G  F  K  A  A  G  M  Y  G  G  L  R  A  L  G  E  K  P  D  L  A  L  V  T  C  D  V  D  A  I  S  A   : G  A  F  T  T  N  V  V  A  A  A  P  V  L  Y  C  K  S  A  L  N  A  S  K  T  :  A  R  A  V  L  I  N  A  G  Q  A  N  A  A  T  :  G  D  A  G  Y  Q  D  V  I  E  C  S  S  S  L  A  K  :  L  L  Q  L  K  Q  D  E  V  L  I  E  S  T  G  V  I  G  Q  R  I  K  K  :  E  A  L  L  N  S  L  P  H  L  V  K  Q  L  S  P  T  V  E  G :   A  N  S  A  A  V  A  I  T  T  T  D  L  V  S  K  S  V  A  V  E  T  E  :  V  R  G  T  R  I  R  V  G  G  M  A  K  G  S  G  M  I  H  P  N  M  A  T  M  L  G  :  V  V  T  T  D  </first_frame>
            <second_frame>  Q  N  S  L  A  D  Q  L  K  Q  W  L  F  L  F  L  T  S  S  L  S  A  D  F  Q  T  S  M  V  *  S :   C  R  Y  V  V  R  Q  G  V  F  G  E  I  V  K  Y  L  Q  L  Y  Q  C  Q  K  R  H  Q  I  I  Y  Q  Q  L  L  Y  F  S  L  K  D  H  G  N  R :   F  L  V  V  L  L  L  Q  R  V  S  K  L  L  G  C  M  V  D  C  V  L  L  E  R  N  L  I  S  H  S  S  L  V  M  *  M  P  Y  L  Q  :  G  H  L  L  Q  M  L  L  Q  L  H  L  Y  Y  T  V  K  A  H  *  M  H  L  K  R :   L  V  R  Y  *  *  M  L  V  K  L  M  Q  Q  R :   V  M  Q  V  I  K  M  *  L  S  A  Q  V  H  *  L  S :   Y  F  N  *  S  K  T  K  S  *  S  N  Q  L  V  *  L  V  K  E  *  R  R :   K  H  F  S  T  H  S  H  I  L  L  N  S  F  H  Q  P  W  R   : G  Q  I  L  Q  L  *  L  *  R  P  L  I  L  L  V  R  V  W  L  L  K  Q  K :   *  E  E  L  E  S  E  L  G  A  W  Q  R  V  L  G  *  F  I  L  T  W  Q  Q  C  L  V :   *  *  L  Q  M </second_frame>
            <third_frame>   K  T  L  *  L  T  N  S  N  N  G  S  F  C  S  S  L  H  L  C  Q  Q  I  F  R  P  Q  W  C  K   : A  A  G  T  W  F  A  K  V  F  S  E  R  L  *  S  I  Y  S  Y  I  N  V  K  R  G  I  K  L  Y  T  S  S  S  Y  I  S  P  *  R  T  M  A  T   : D  S  W  W  C  Y  C  C  K  G  F  Q  S  C  W  D  V  W  W  I  A  C  S  W  R  E  T  *  S  R  T  R  H  L  *  C  R  C  H  I  C  R :   G  I  Y  Y  K  C  C  C  S  C  T  C  T  I  L  *  K  R  T  K  C  I  *  N   : G  S  C  G  I  N  K  C  W  S  S  *  C  S  N   : G  *  C  R  L  S  R  C  N  *  V  L  K  F  T  S  *   : V  T  S  T  E  A  R  R  S  L  D  R  I  N  W  C  N  W  S  K  N  K  E   : G  S  T  S  Q  L  T  P  T  S  C  *  T  A  F  T  N  R  G  G  :  G  K  F  C  S  C  S  Y  N  D  H  *  S  C  *  *  E  C  G  C  *  N  R   : S  K  R  N  S  N  Q  S  W  G  H  G  K  G  F  W  D  D  S  S  *  H  G  N  N  A  W   : C  S  N  Y  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0096M01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16534" stop="16608"/>
                    <exon start="17080" stop="17211"/>
                    <exon start="18022" stop="18145"/>
                    <exon start="18408" stop="18481"/>
                    <exon start="18959" stop="19003"/>
                    <exon start="19203" stop="19253"/>
                    <exon start="19325" stop="19393"/>
                    <exon start="19587" stop="19645"/>
                    <exon start="19843" stop="19912"/>
                    <exon start="20268" stop="20348"/>
                    <exon start="20424" stop="20438"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTQTMALSVPHFISVSRFSDLNGVKLQVRGSPRCFRRDCKVFTVISMSKEASNYIPAAPIFLPEGPWQQIPGGVTAAKGFKAAGMYGGLRALGEKPDLALVTCDVDAISAGAFTTNVVAAAPVLYCKSALNASKTARAVLINAGQANAATGDAGYQDVIECSSSLAKLLQLKQDEVLIESTGVIGQRIKKEALLNSLPHLVKQLSPTVEGANSAAVAITTTDLVSKSVAVETEVRGTRIRVGGMAKGSGMIHPNMATMLGVVTTD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="21824" PGL_stop="23887"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21824" e_stop="21840"/>
            <exon e_start="23072" e_stop="23149"/>
            <exon e_start="23231" e_stop="23376"/>
            <exon e_start="23833" e_stop="23887"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.987"/>
          <exon-intron don_prob="0.656" acc_prob="1.000" e_score="0.973"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21824" e_stop="21840" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21841" i_stop="23071" i_length="1231"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="23072" e_stop="23149" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="23150" i_stop="23230" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="23231" e_stop="23376" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.656" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23377" i_stop="23832" i_length="456"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="23833" e_stop="23887" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21824" stop="21840"/>
              <exon start="23072" stop="23149"/>
              <exon start="23231" stop="23376"/>
              <exon start="23833" stop="23887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACATGTTTGATTGAG : GTGAGGGTTGATGGTGCTGATAACGAAGCTGAAGCAGCAAAGATTGCACGTTCAGTGGCTTCCTCTTCACTTGTCAAG : GCTGCTGTATACGGTAGGGATCCAAATTGGGGCCGTATTGCTTGTGCTGCTGGCTATGCAGGTATCCCTTTCAACGCCGACAAGCTTCGGATATCTCTTGGAGATATTGTTCTTATGGAAGCAGGGCAACCACTTCCATTTGATAG : GGTTGCAGCTAGCAATTATCTCCGAAAGGCTGGTGAAGTCCATGGCACTGTTGAA</gDNA_template>
            <first_frame> Q  H  V  *  L  R :   *  G  L  M  V  L  I  T  K  L  K  Q  Q  R  L  H  V  Q  W  L  P  L  H  L  S  R :   L  L  Y  T  V  G  I  Q  I  G  A  V  L  L  V  L  L  A  M  Q  V  S  L  S  T  P  T  S  F  G  Y  L  L  E  I  L  F  L  W  K  Q  G  N  H  F  H  L  I   : G  L  Q  L  A  I  I  S  E  R  L  V  K  S  M  A  L  L   </first_frame>
            <second_frame>  N  M  F  D  *   : G  E  G  *  W  C  *  *  R  S  *  S  S  K  D  C  T  F  S  G  F  L  F  T  C  Q   : G  C  C  I  R  *  G  S  K  L  G  P  Y  C  L  C  C  W  L  C  R  Y  P  F  Q  R  R  Q  A  S  D  I  S  W  R  Y  C  S  Y  G  S  R  A  T  T  S  I  *  *  :  G  C  S  *  Q  L  S  P  K  G  W  *  S  P  W  H  C  *  </second_frame>
            <third_frame>   T  C  L  I  E  :  V  R  V  D  G  A  D  N  E  A  E  A  A  K  I  A  R  S  V  A  S  S  S  L  V  K  :  A  A  V  Y  G  R  D  P  N  W  G  R  I  A  C  A  A  G  Y  A  G  I  P  F  N  A  D  K  L  R  I  S  L  G  D  I  V  L  M  E  A  G  Q  P  L  P  F  D  R :   V  A  A  S  N  Y  L  R  K  A  G  E  V  H  G  T  V  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0096M01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21826" stop="21840"/>
                    <exon start="23072" stop="23149"/>
                    <exon start="23231" stop="23376"/>
                    <exon start="23833" stop="23887"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCLIEVRVDGADNEAEAAKIARSVASSSLVKAAVYGRDPNWGRIACAAGYAGIPFNADKLRISLGDIVLMEAGQPLPFDRVAASNYLRKAGEVHGTVE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0096M01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23076" stop="23149"/>
                    <exon start="23231" stop="23376"/>
                    <exon start="23833" stop="23885"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLMVLITKLKQQRLHVQWLPLHLSRLLYTVGIQIGAVLLVLLAMQVSLSTPTSFGYLLEILFLWKQGNHFHLIGLQLAIISERLVKSMALL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28598" PGL_stop="24990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28598" e_stop="28006"/>
            <exon e_start="27137" e_stop="26719"/>
            <exon e_start="25635" e_stop="24990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.921" e_score="0.921"/>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="28598" e_stop="28006" e_length="593"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.921">
            <gDNA_intron_boundary i_start="28005" i_stop="27138" i_length="868"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27137" e_stop="26719" e_length="419"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26718" i_stop="25636" i_length="1083"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="25635" e_stop="24990" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28598" stop="28213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28580" stop="28006"/>
              <exon start="27137" stop="27018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28574" stop="28006"/>
              <exon start="27137" stop="27004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28558" stop="28162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28553" stop="28006"/>
              <exon start="27137" stop="27046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28551" stop="28006"/>
              <exon start="27137" stop="26967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28543" stop="28006"/>
              <exon start="27137" stop="27115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28543" stop="28006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28530" stop="28073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28496" stop="28006"/>
              <exon start="27137" stop="27075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28495" stop="28006"/>
              <exon start="27137" stop="27115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28493" stop="28006"/>
              <exon start="27137" stop="26938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28484" stop="28010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28441" stop="28006"/>
              <exon start="27137" stop="26963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28324" stop="28006"/>
              <exon start="27137" stop="26844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28323" stop="28006"/>
              <exon start="27137" stop="26782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28312" stop="28006"/>
              <exon start="27137" stop="26795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28230" stop="28006"/>
              <exon start="27137" stop="26784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28230" stop="28006"/>
              <exon start="27137" stop="26828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28200" stop="28006"/>
              <exon start="27137" stop="26872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28078" stop="28006"/>
              <exon start="27137" stop="26741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27041" stop="26719"/>
              <exon start="25635" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26972" stop="26719"/>
              <exon start="25635" stop="25224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26947" stop="26719"/>
              <exon start="25635" stop="24995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26800" stop="26719"/>
              <exon start="25635" stop="24997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25635" stop="24990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25547" stop="24990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25474" stop="24996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25473" stop="24996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25473" stop="24999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25433" stop="24996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCCTATAAATATAAATATTAGTCTCTTTCTCACATATTCCCCCAATTTCGTGTTTTGGTCTTCCGTTGAAATCGATGGTAATTTAGGGCTATAATAATGATCCGATTTACTCGTTTTCTGGTTATGCTTCTTTGAAATTCGAGCAATTCAATCTTCTTCATCCATTGTTTCGATCACTGTACTTTGAGATTTTGTGGTGTGGAGCTGAATCGAGTTGAGTTTTTTTTTTTTGGGAGGGGAATTAGGGATTTTGGTTTTGGTGGCGGTGGGAAATCGAAGGGCATCGCATCTTTACGATGCATTCGGTGTCGCCTTTTCTATTTGATCTGTTGACTTTACCTCAAGCTGCTTCTTTCTATGGAGTTTTGTGTTCTCATCGTTTGAAGCCTTGGCGTAATAGTTTTAGTTAACGTTTAATTTCATCTTCGTCTGTTTTCTTTTTCTTCTGTTGTTGCTGTTTCAGTTGTGATCTTGCTGGTTTTCTGTTTCTTTCGAGGGGATTTTTCAGCTGTTTCACATCTTTTTCCGAGTAGTTGTAGTCGAATCTGGTGGAAGTTTGCGTGATTTTGCTATACATCGACATACTGAAAG : ATTTTTGCTGCTCTCTTTAATTGATGGCCGTTTGTTCTGCTACTTACAAGTGTGACTCTGAAAGTTTAAGTTGCTTTTGTGAGTCATCAAAGGAGACTCTTGGTTCCGCTTCTTGCTATCCAGGAGGTCCTTTTGTTAGTGATCTTGGGTACCATTTCACTGAATCTCTGAGTATTAAGGATGGTGAAGACTTGATTTACAAGGAACATTCCAACACATTGGAGGAAGATGGAACTGAAGATATGCATGCAAATGATGCTGACACTGGCAGTACGGACTCAGAGAAATGCTTGATCAAGTCCTCAGAATTTCCATGCTCTTCTATGAGCACTCCCCCTGCTGAGTTGGTTCATGAGAAGGAGCAGGAGGCTGATGCTAAATCAACTGACTTGCCTTATTCACGTTCCATATCTTCACCT : ACAGCTTTGAAGCTTGTATCTGCCATTAAAGGTAGCCGTGAGAAACAAGGCAAGCCACCCAAGAAGCTGTCTGTGACATGGGCTCCCGATGTGTATGACCCTATCCCAACAGCAGCTTCGCATGTGCCAATCAAGGGGCAACGCCACAGGAGTGACCACAGGAAGAATGGAAAGAGCAAGCAGAAAAGTAATGGCAAATCTTCACGTGGAAGCAAAGGTAAAGACAAGAAACAAGGTCGCAAACATGGTGGAAGTACCAGGAGGAGTTATTATCCTCTAGAGGATAAGGACATAATGAGTTGTAATCGCTTTCACTGTCTGGAGGATGAAATTACTGCTCATTCTAGTGGGCTGCAGGCTGGTGCCATGGATTATGATATTGGCAGCCCCCCGGATTCATTCTGCGGTAGCAGTTTCCGAAAGAAATCTGTCACAGAGTTGCATTTCCCAGTTGCAAAGGCTTCATGAGCTTCCTTTCTGATTGTTGGTGTGTTTTCTTCTCGATTGTTTCCTTCTAGTTGTAAATAAATAAGTTTGACGCTTATCTGAGTTGTGGGAGTTGTTATAGAGTTGTTGGCATTTTTGTACTTAAAAAAACTTATTAACTTTTGACCTGTTGAATGGACGGATGACTTTTTGCATTGCT</gDNA_template>
            <first_frame> Y  P  I  N  I  N  I  S  L  F  L  T  Y  S  P  N  F  V  F  W  S  S  V  E  I  D  G  N  L  G  L  *  *  *  S  D  L  L  V  F  W  L  C  F  F  E  I  R  A  I  Q  S  S  S  S  I  V  S  I  T  V  L  *  D  F  V  V  W  S  *  I  E  L  S  F  F  F  L  G  G  E  L  G  I  L  V  L  V  A  V  G  N  R  R  A  S  H  L  Y  D  A  F  G  V  A  F  S  I  *  S  V  D  F  T  S  S  C  F  F  L  W  S  F  V  F  S  S  F  E  A  L  A  *  *  F  *  L  T  F  N  F  I  F  V  C  F  L  F  L  L  L  L  L  F  Q  L  *  S  C  W  F  S  V  S  F  E  G  I  F  Q  L  F  H  I  F  F  R  V  V  V  V  E  S  G  G  S  L  R  D  F  A  I  H  R  H  T  E  R :   F  L  L  L  S  L  I  D  G  R  L  F  C  Y  L  Q  V  *  L  *  K  F  K  L  L  L  *  V  I  K  G  D  S  W  F  R  F  L  L  S  R  R  S  F  C  *  *  S  W  V  P  F  H  *  I  S  E  Y  *  G  W  *  R  L  D  L  Q  G  T  F  Q  H  I  G  G  R  W  N  *  R  Y  A  C  K  *  C  *  H  W  Q  Y  G  L  R  E  M  L  D  Q  V  L  R  I  S  M  L  F  Y  E  H  S  P  C  *  V  G  S  *  E  G  A  G  G  *  C  *  I  N  *  L  A  L  F  T  F  H  I  F  T   : Y  S  F  E  A  C  I  C  H  *  R  *  P  *  E  T  R  Q  A  T  Q  E  A  V  C  D  M  G  S  R  C  V  *  P  Y  P  N  S  S  F  A  C  A  N  Q  G  A  T  P  Q  E  *  P  Q  E  E  W  K  E  Q  A  E  K  *  W  Q  I  F  T  W  K  Q  R  *  R  Q  E  T  R  S  Q  T  W  W  K  Y  Q  E  E  L  L  S  S  R  G  *  G  H  N  E  L  *  S  L  S  L  S  G  G  *  N  Y  C  S  F  *  W  A  A  G  W  C  H  G  L  *  Y  W  Q  P  P  G  F  I  L  R  *  Q  F  P  K  E  I  C  H  R  V  A  F  P  S  C  K  G  F  M  S  F  L  S  D  C  W  C  V  F  F  S  I  V  S  F  *  L  *  I  N  K  F  D  A  Y  L  S  C  G  S  C  Y  R  V  V  G  I  F  V  L  K  K  T  Y  *  L  L  T  C  *  M  D  G  *  L  F  A  L   </first_frame>
            <second_frame>  T  L  *  I  *  I  L  V  S  F  S  H  I  P  P  I  S  C  F  G  L  P  L  K  S  M  V  I  *  G  Y  N  N  D  P  I  Y  S  F  S  G  Y  A  S  L  K  F  E  Q  F  N  L  L  H  P  L  F  R  S  L  Y  F  E  I  L  W  C  G  A  E  S  S  *  V  F  F  F  W  E  G  N  *  G  F  W  F  W  W  R  W  E  I  E  G  H  R  I  F  T  M  H  S  V  S  P  F  L  F  D  L  L  T  L  P  Q  A  A  S  F  Y  G  V  L  C  S  H  R  L  K  P  W  R  N  S  F  S  *  R  L  I  S  S  S  S  V  F  F  F  F  C  C  C  C  F  S  C  D  L  A  G  F  L  F  L  S  R  G  F  F  S  C  F  T  S  F  S  E  *  L  *  S  N  L  V  E  V  C  V  I  L  L  Y  I  D  I  L  K   : D  F  C  C  S  L  *  L  M  A  V  C  S  A  T  Y  K  C  D  S  E  S  L  S  C  F  C  E  S  S  K  E  T  L  G  S  A  S  C  Y  P  G  G  P  F  V  S  D  L  G  Y  H  F  T  E  S  L  S  I  K  D  G  E  D  L  I  Y  K  E  H  S  N  T  L  E  E  D  G  T  E  D  M  H  A  N  D  A  D  T  G  S  T  D  S  E  K  C  L  I  K  S  S  E  F  P  C  S  S  M  S  T  P  P  A  E  L  V  H  E  K  E  Q  E  A  D  A  K  S  T  D  L  P  Y  S  R  S  I  S  S  P  :  T  A  L  K  L  V  S  A  I  K  G  S  R  E  K  Q  G  K  P  P  K  K  L  S  V  T  W  A  P  D  V  Y  D  P  I  P  T  A  A  S  H  V  P  I  K  G  Q  R  H  R  S  D  H  R  K  N  G  K  S  K  Q  K  S  N  G  K  S  S  R  G  S  K  G  K  D  K  K  Q  G  R  K  H  G  G  S  T  R  R  S  Y  Y  P  L  E  D  K  D  I  M  S  C  N  R  F  H  C  L  E  D  E  I  T  A  H  S  S  G  L  Q  A  G  A  M  D  Y  D  I  G  S  P  P  D  S  F  C  G  S  S  F  R  K  K  S  V  T  E  L  H  F  P  V  A  K  A  S  *  A  S  F  L  I  V  G  V  F  S  S  R  L  F  P  S  S  C  K  *  I  S  L  T  L  I  *  V  V  G  V  V  I  E  L  L  A  F  L  Y  L  K  K  L  I  N  F  *  P  V  E  W  T  D  D  F  L  H  C  </second_frame>
            <third_frame>   P  Y  K  Y  K  Y  *  S  L  S  H  I  F  P  Q  F  R  V  L  V  F  R  *  N  R  W  *  F  R  A  I  I  M  I  R  F  T  R  F  L  V  M  L  L  *  N  S  S  N  S  I  F  F  I  H  C  F  D  H  C  T  L  R  F  C  G  V  E  L  N  R  V  E  F  F  F  F  G  R  G  I  R  D  F  G  F  G  G  G  G  K  S  K  G  I  A  S  L  R  C  I  R  C  R  L  F  Y  L  I  C  *  L  Y  L  K  L  L  L  S  M  E  F  C  V  L  I  V  *  S  L  G  V  I  V  L  V  N  V  *  F  H  L  R  L  F  S  F  S  S  V  V  A  V  S  V  V  I  L  L  V  F  C  F  F  R  G  D  F  S  A  V  S  H  L  F  P  S  S  C  S  R  I  W  W  K  F  A  *  F  C  Y  T  S  T  Y  *  K  :  I  F  A  A  L  F  N  *  W  P  F  V  L  L  L  T  S  V  T  L  K  V  *  V  A  F  V  S  H  Q  R  R  L  L  V  P  L  L  A  I  Q  E  V  L  L  L  V  I  L  G  T  I  S  L  N  L  *  V  L  R  M  V  K  T  *  F  T  R  N  I  P  T  H  W  R  K  M  E  L  K  I  C  M  Q  M  M  L  T  L  A  V  R  T  Q  R  N  A  *  S  S  P  Q  N  F  H  A  L  L  *  A  L  P  L  L  S  W  F  M  R  R  S  R  R  L  M  L  N  Q  L  T  C  L  I  H  V  P  Y  L  H  L :   Q  L  *  S  L  Y  L  P  L  K  V  A  V  R  N  K  A  S  H  P  R  S  C  L  *  H  G  L  P  M  C  M  T  L  S  Q  Q  Q  L  R  M  C  Q  S  R  G  N  A  T  G  V  T  T  G  R  M  E  R  A  S  R  K  V  M  A  N  L  H  V  E  A  K  V  K  T  R  N  K  V  A  N  M  V  E  V  P  G  G  V  I  I  L  *  R  I  R  T  *  *  V  V  I  A  F  T  V  W  R  M  K  L  L  L  I  L  V  G  C  R  L  V  P  W  I  M  I  L  A  A  P  R  I  H  S  A  V  A  V  S  E  R  N  L  S  Q  S  C  I  S  Q  L  Q  R  L  H  E  L  P  F  *  L  L  V  C  F  L  L  D  C  F  L  L  V  V  N  K  *  V  *  R  L  S  E  L  W  E  L  L  *  S  C  W  H  F  C  T  *  K  N  L  L  T  F  D  L  L  N  G  R  M  T  F  C  I  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0096M01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27117" stop="26719"/>
                    <exon start="25635" stop="25168"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMAVCSATYKCDSESLSCFCESSKETLGSASCYPGGPFVSDLGYHFTESLSIKDGEDLIYKEHSNTLEEDGTEDMHANDADTGSTDSEKCLIKSSEFPCSSMSTPPAELVHEKEQEADAKSTDLPYSRSISSPTALKLVSAIKGSREKQGKPPKKLSVTWAPDVYDPIPTAASHVPIKGQRHRSDHRKNGKSKQKSNGKSSRGSKGKDKKQGRKHGGSTRRSYYPLEDKDIMSCNRFHCLEDEITAHSSGLQAGAMDYDIGSPPDSFCGSSFRKKSVTELHFPVAKAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0096M01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28461" stop="28264"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSNSIFFIHCFDHCTLRFCGVELNRVEFFFFGRGIRDFGFGGGGKSKGIASLRCIRCRLFYLIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="33707" PGL_stop="32430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33707" e_stop="33409"/>
            <exon e_start="33187" e_stop="32696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33707" e_stop="33409" e_length="299"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="33187" e_stop="32696" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33707" stop="33409"/>
              <exon start="33187" stop="32716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33693" stop="33409"/>
              <exon start="33187" stop="32721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33686" stop="33409"/>
              <exon start="33187" stop="32721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33683" stop="33409"/>
              <exon start="33187" stop="32744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33673" stop="33409"/>
              <exon start="33187" stop="32743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33673" stop="33409"/>
              <exon start="33187" stop="33113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33672" stop="33520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33668" stop="33409"/>
              <exon start="33187" stop="32725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33666" stop="33409"/>
              <exon start="33187" stop="32766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33665" stop="33409"/>
              <exon start="33187" stop="32757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33664" stop="33409"/>
              <exon start="33187" stop="32721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33651" stop="33409"/>
              <exon start="33187" stop="32718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33649" stop="33409"/>
              <exon start="33187" stop="32719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33645" stop="33409"/>
              <exon start="33187" stop="32716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33645" stop="33409"/>
              <exon start="33187" stop="32724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33644" stop="33409"/>
              <exon start="33187" stop="32941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33643" stop="33409"/>
              <exon start="33187" stop="32749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33630" stop="33409"/>
              <exon start="33187" stop="32696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33616" stop="33409"/>
              <exon start="33187" stop="32724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33616" stop="33409"/>
              <exon start="33187" stop="32813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33579" stop="33409"/>
              <exon start="33187" stop="32721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33570" stop="33409"/>
              <exon start="33187" stop="32755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33506" stop="33409"/>
              <exon start="33187" stop="32719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33506" stop="33409"/>
              <exon start="33187" stop="32719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33506" stop="33409"/>
              <exon start="33187" stop="32719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33489" stop="33409"/>
              <exon start="33187" stop="32721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266003" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33173" stop="32721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33131" stop="32713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33083" stop="32713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33048" stop="32725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCACTGTAACTCAAATTCATATCATAAATCAATTCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG : GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAAGTGAAGGAAATTTCTTGTTTCTGTAGTGAAGTTT</gDNA_template>
            <first_frame> L  T  V  T  Q  I  H  I  I  N  Q  F  K  T  K  A  I  Q  V  I  H  *  N  S  S  F  G  V  Q  F  F  *  G  R  K  W  R  R  R  V  L  E  E  E  K  V  V  V  Q  R  R  R  Q  L  Q  D  L  L  R  L  D  Y  S  F  R  W  V  E  L  V  G  I  *  K  R  V  V  I  L  N  E  L  E  V  V  H  L  F  I  L  L  L  C  L  S  T  L  L  L  R :   F  W  N  W  L  E  M  Q  R  E  I  T  R  R  T  E  *  Y  Q  G  M  F  C  *  L  *  G  M  M  K  N  L  E  S  F  Y  L  V  *  P  L  L  M  E  V  F  F  L  T  S  I  Q  F  F  C  L  R  N  L  I  K  L  E  K  N  L  L  N  H  H  L  R  L  P  N  H  H  E  R  L  K  F  V  K  N  N  T  L  P  K  L  H  D  F  R  I  L  *  T  C  V  W  F  K  *  I  C  *  C  M  *  V  W  Y  L  I  S  A  C  C  V  G  G  L  *  A  L  G  T  M  Y  L  F  Y  V  L  *  N  K  S  F  A  V  L  S  N  I  T  S  M  V  I  S  E  G  N  F  L  F  L  *  *  S   </first_frame>
            <second_frame>  S  L  *  L  K  F  I  S  *  I  N  S  K  R  K  Q  Y  K  *  F  I  E  I  H  H  L  G  F  N  F  F  E  V  E  N  G  E  E  G  C  W  R  K  K  R  W  W  S  K  E  E  G  S  Y  K  I  C  *  G  W  I  T  V  S  G  G  *  N  W  *  V  F  E  K  G  S  L  F  *  T  S  W  K  W  C  T  C  L  S  C  C  C  A  *  V  P  C  C  *   : G  F  G  I  G  W  K  C  S  E  R  *  Q  E  E  Q  N  N  T  K  A  C  F  V  S  C  E  E  *  *  R  T  W  K  A  S  I  W  C  N  H  C  S  W  R  C  S  S  *  H  Q  S  N  S  S  A  *  E  I  *  *  S  W  K  R  T  C  *  I  T  I  *  G  Y  Q  I  T  T  K  G  L  N  L  *  R  T  T  L  Y  Q  S  C  M  I  L  G  F  Y  E  L  V  F  G  S  N  K  S  V  N  V  C  R  F  G  I  *  F  L  L  V  V  *  G  A  Y  K  P  *  E  Q  C  T  C  F  M  F  C  K  T  N  H  L  Q  F  Y  Q  I  S  L  Q  W  L  *  V  K  E  I  S  C  F  C  S  E  V  </second_frame>
            <third_frame>   H  C  N  S  N  S  Y  H  K  S  I  Q  N  E  S  N  T  S  N  S  L  K  F  I  I  W  G  S  I  F  L  R  *  K  M  E  K  K  G  A  G  G  R  K  G  G  G  P  K  K  K  A  V  T  R  S  V  K  A  G  L  Q  F  P  V  G  R  I  G  R  Y  L  K  K  G  R  Y  S  E  R  V  G  S  G  A  P  V  Y  L  A  A  V  L  E  Y  L  A  A  E  :  V  L  E  L  A  G  N  A  A  R  D  N  K  K  N  R  I  I  P  R  H  V  L  L  A  V  R  N  D  E  E  L  G  K  L  L  S  G  V  T  I  A  H  G  G  V  L  P  N  I  N  P  I  L  L  P  K  K  S  D  K  V  G  K  E  P  A  K  S  P  S  K  A  T  K  S  P  R  K  A  *  I  C  E  E  Q  H  S  T  K  V  A  *  F  *  D  F  M  N  L  C  L  V  Q  I  N  L  L  M  Y  V  G  L  V  S  N  F  C  L  L  C  R  G  L  I  S  L  R  N  N  V  L  V  L  C  F  V  K  Q  I  I  C  S  F  I  K  Y  H  F  N  G  Y  K  *  R  K  F  L  V  S  V  V  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0096M01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33606" stop="33409"/>
                    <exon start="33187" stop="32945"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEKKGAGGRKGGGPKKKAVTRSVKAGLQFPVGRIGRYLKKGRYSERVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLSGVTIAHGGVLPNINPILLPKKSDKVGKEPAKSPSKATKSPRKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33687" e_stop="33409"/>
            <exon e_start="33187" e_stop="32730"/>
            <exon e_start="32434" e_stop="32430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33687" e_stop="33409" e_length="279"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33408" i_stop="33188" i_length="221"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33187" e_stop="32730" e_length="458"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.930">
            <gDNA_intron_boundary i_start="32729" i_stop="32435" i_length="295"/>
          </intron>
          <exon e_serial="3" e_score="0.000">
            <gDNA_exon_boundary e_start="32434" e_stop="32430" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33687" stop="33409"/>
              <exon start="33187" stop="32730"/>
              <exon start="32434" stop="32430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33683" stop="33409"/>
              <exon start="33187" stop="32744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33673" stop="33409"/>
              <exon start="33187" stop="32743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33673" stop="33409"/>
              <exon start="33187" stop="33113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33672" stop="33520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33666" stop="33409"/>
              <exon start="33187" stop="32766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33665" stop="33409"/>
              <exon start="33187" stop="32757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33644" stop="33409"/>
              <exon start="33187" stop="32941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33643" stop="33409"/>
              <exon start="33187" stop="32749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33616" stop="33409"/>
              <exon start="33187" stop="32813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33570" stop="33409"/>
              <exon start="33187" stop="32755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCATAAATCAATTCAAAACGAAAGCAATACAAGTAATTCATTGAAATTCATCATTTGGGGTTCAATTTTTTTGAGGTAGAAAATGGAGAAGAAGGGTGCTGGAGGAAGAAAAGGTGGTGGTCCAAAGAAGAAGGCAGTTACAAGATCTGTTAAGGCTGGATTACAGTTTCCGGTGGGTAGAATTGGTAGGTATTTGAAAAAGGGTCGTTATTCTGAACGAGTTGGAAGTGGTGCACCTGTTTATCTTGCTGCTGTGCTTGAGTACCTTGCTGCTGAG : GTTTTGGAATTGGCTGGAAATGCAGCGAGAGATAACAAGAAGAACAGAATAATACCAAGGCATGTTTTGTTAGCTGTGAGGAATGATGAAGAACTTGGAAAGCTTCTATCTGGTGTAACCATTGCTCATGGAGGTGTTCTTCCTAACATCAATCCAATTCTTCTGCCTAAGAAATCTGATAAAGTTGGAAAAGAACCTGCTAAATCACCATCTAAGGCTACCAAATCACCACGAAAGGCTTAAATTTGTGAAGAACAACACTCTACCAAAGTTGCATGATTTTAGGATTTTATGAACTTGTGTTTGGTTCAAATAAATCTGTTAATGTATGTAGGTTTGGTATCTAATTTCTGCTTGTTGTGTAGGGGGCTTATAAGCCTTAGGAACAATGTACTTGTTTTATGTTTTGTAAAACAAATCATTTGCAGTTTTATCAAATATCACTTCAATGGTTATAA : GTAGT</gDNA_template>
            <first_frame> Y  H  K  S  I  Q  N  E  S  N  T  S  N  S  L  K  F  I  I  W  G  S  I  F  L  R  *  K  M  E  K  K  G  A  G  G  R  K  G  G  G  P  K  K  K  A  V  T  R  S  V  K  A  G  L  Q  F  P  V  G  R  I  G  R  Y  L  K  K  G  R  Y  S  E  R  V  G  S  G  A  P  V  Y  L  A  A  V  L  E  Y  L  A  A  E  :  V  L  E  L  A  G  N  A  A  R  D  N  K  K  N  R  I  I  P  R  H  V  L  L  A  V  R  N  D  E  E  L  G  K  L  L  S  G  V  T  I  A  H  G  G  V  L  P  N  I  N  P  I  L  L  P  K  K  S  D  K  V  G  K  E  P  A  K  S  P  S  K  A  T  K  S  P  R  K  A  *  I  C  E  E  Q  H  S  T  K  V  A  *  F  *  D  F  M  N  L  C  L  V  Q  I  N  L  L  M  Y  V  G  L  V  S  N  F  C  L  L  C  R  G  L  I  S  L  R  N  N  V  L  V  L  C  F  V  K  Q  I  I  C  S  F  I  K  Y  H  F  N  G  Y  K :   *  </first_frame>
            <second_frame>  I  I  N  Q  F  K  T  K  A  I  Q  V  I  H  *  N  S  S  F  G  V  Q  F  F  *  G  R  K  W  R  R  R  V  L  E  E  E  K  V  V  V  Q  R  R  R  Q  L  Q  D  L  L  R  L  D  Y  S  F  R  W  V  E  L  V  G  I  *  K  R  V  V  I  L  N  E  L  E  V  V  H  L  F  I  L  L  L  C  L  S  T  L  L  L  R :   F  W  N  W  L  E  M  Q  R  E  I  T  R  R  T  E  *  Y  Q  G  M  F  C  *  L  *  G  M  M  K  N  L  E  S  F  Y  L  V  *  P  L  L  M  E  V  F  F  L  T  S  I  Q  F  F  C  L  R  N  L  I  K  L  E  K  N  L  L  N  H  H  L  R  L  P  N  H  H  E  R  L  K  F  V  K  N  N  T  L  P  K  L  H  D  F  R  I  L  *  T  C  V  W  F  K  *  I  C  *  C  M  *  V  W  Y  L  I  S  A  C  C  V  G  G  L  *  A  L  G  T  M  Y  L  F  Y  V  L  *  N  K  S  F  A  V  L  S  N  I  T  S  M  V  I   : S  S </second_frame>
            <third_frame>   S  *  I  N  S  K  R  K  Q  Y  K  *  F  I  E  I  H  H  L  G  F  N  F  F  E  V  E  N  G  E  E  G  C  W  R  K  K  R  W  W  S  K  E  E  G  S  Y  K  I  C  *  G  W  I  T  V  S  G  G  *  N  W  *  V  F  E  K  G  S  L  F  *  T  S  W  K  W  C  T  C  L  S  C  C  C  A  *  V  P  C  C  *   : G  F  G  I  G  W  K  C  S  E  R  *  Q  E  E  Q  N  N  T  K  A  C  F  V  S  C  E  E  *  *  R  T  W  K  A  S  I  W  C  N  H  C  S  W  R  C  S  S  *  H  Q  S  N  S  S  A  *  E  I  *  *  S  W  K  R  T  C  *  I  T  I  *  G  Y  Q  I  T  T  K  G  L  N  L  *  R  T  T  L  Y  Q  S  C  M  I  L  G  F  Y  E  L  V  F  G  S  N  K  S  V  N  V  C  R  F  G  I  *  F  L  L  V  V  *  G  A  Y  K  P  *  E  Q  C  T  C  F  M  F  C  K  T  N  H  L  Q  F  Y  Q  I  S  L  Q  W  L  *  :  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0096M01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33606" stop="33409"/>
                    <exon start="33187" stop="32945"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEKKGAGGRKGGGPKKKAVTRSVKAGLQFPVGRIGRYLKKGRYSERVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLSGVTIAHGGVLPNINPILLPKKSDKVGKEPAKSPSKATKSPRKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 96 chains have been computed
$ 
$ memory statistics:
$ 153456 bytes spliced alignments in total
$ 72 spliced alignments have been stored
$ 2131 bytes was the average size of a spliced alignment
$ 12928 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2154 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 101 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 23:27:16
-->
