<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 14:20:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346543" ref_strand="+" ref_description="SGN-U346543        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to A. thaliana hypothetical protein T13L16.2, GenBank accession number 2708738; contains Pfam domain PF03171 2OG-Fe(II) oxygenase superfamily | chr4:1306503-1310938 FORWARD | Aliases: T4I9.18, T4I9_18(evalue: 8e-33, score=137) genbank/nr: gi|3924611|gb|AAC79112.1| hypothetical protein [Arabidopsis thaliana] >gi|7269779|emb|CAB77779.1| hypothetical protein [Arabidopsis thaliana] >gi|22136492|gb|AAM91324.1| unknown protein [Arabidopsis thaliana] >gi|20260288|gb|AAM13042.1| unknown protein [Arabidopsis thaliana] >gi|15236223|ref|NP_192203.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (evalue: 6e-31, score=137)">
      <seq>aaatacattactgttgcaacaatttagactattcaaacacaacaaattttcagctgcctccccaaaaatactggaaactttcactccccgcataaaattcaactcaagatgccgccggcagccggcgttgttgcgaattccgatcgagtttcatttggtaattctatggttatccctactcccggtgctccggtaatccaaccagctccaatgacgtcagacacatacgctaaggatgcaattatagcgtggttcagaggtgaattcgccgctgcaaatgcgattattgatgcgctttgtaatcatatcactcagctggaaggcgaccgatcggagtacgaaccggttttctccgcaatacatcgacggagattgaattggatcccgattcttcagatgcagaagtattactcgattgctgatgttacgcttgaactccgtaaactcgctgctaggaaagtgagtgatagagtcgaggtcgccgacgtgaaacagagtgaagtagtgaaggaatcgtttaatgagaagatcaattgtcacgatgaagacacggaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="1930" stop="3088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2230" g_stop="2788" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-U346543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2230" e_stop="2788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACATTACTGTTGCAACAATTTAGACTATTCAAACACAACAAATTTTCAGCTGCCTCCCCAAAAATACTGGAAACTTTCACTCCCCGCATAAAATTCAACTCAAGATGCCGCCGGCAGCCGGCGTTGTTGCGAATTCCGATCGAGTTTCATTTGGTAATTCTATGGTTATCCCTACTCCCGGTGCTCCGGTAATCCAACCAGCTCCAATGACGTCAGACACATACGCTAAGGATGCAATTATAGCGTGGTTCAGAGGTGAATTCGCCGCTGCAAATGCGATTATTGATGCGCTTTGTAATCATATCACTCAGCTGGAAGGCGACCGATCGGAGTACGAACCGGTTTTCTCCGCAATACATCGACGGAGATTGAATTGGATCCCGATTCTTCAGATGCAGAAGTATTACTCGATTGCTGATGTTACGCTTGAACTCCGTAAACTCGCTGCTAGGAAAGTGAGTGATAGAGTCGAGGTCGCCGACGTGAAACAGAGTGAAGTAGTGAAGGAATCGTTTAATGAGAAGATCAATTGTCACGATGAAGACACGGAAAATG</genome_strand>
        <mrna_strand>AAATACATTACTGTTGCAACAATTTAGACTATTCAAACACAACAAATTTTCAGCTGCCTCCCCAAAAATACTGGAAACTTTCACTCCCCGCATAAAATTCAACTCAAGATGCCGCCGGCAGCCGGCGTTGTTGCGAATTCCGATCGAGTTTCATTTGGTAATTCTATGGTTATCCCTACTCCCGGTGCTCCGGTAATCCAACCAGCTCCAATGACGTCAGACACATACGCTAAGGATGCAATTATAGCGTGGTTCAGAGGTGAATTCGCCGCTGCAAATGCGATTATTGATGCGCTTTGTAATCATATCACTCAGCTGGAAGGCGACCGATCGGAGTACGAACCGGTTTTCTCCGCAATACATCGACGGAGATTGAATTGGATCCCGATTCTTCAGATGCAGAAGTATTACTCGATTGCTGATGTTACGCTTGAACTCCGTAAACTCGCTGCTAGGAAAGTGAGTGATAGAGTCGAGGTCGCCGACGTGAAACAGAGTGAAGTAGTGAAGGAATCGTTTAATGAGAAGATCAATTGTCACGATGAAGACACGGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330013" ref_strand="+" ref_description="SGN-U330013        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to A. thaliana hypothetical protein T13L16.2, GenBank accession number 2708738; contains Pfam domain PF03171 2OG-Fe(II) oxygenase superfamily | chr4:1306503-1310938 FORWARD | Aliases: T4I9.18, T4I9_18(evalue: 4e-84, score=307) genbank/nr: gi|3924611|gb|AAC79112.1| hypothetical protein [Arabidopsis thaliana] >gi|7269779|emb|CAB77779.1| hypothetical protein [Arabidopsis thaliana] >gi|22136492|gb|AAM91324.1| unknown protein [Arabidopsis thaliana] >gi|20260288|gb|AAM13042.1| unknown protein [Arabidopsis thaliana] >gi|15236223|ref|NP_192203.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (evalue: 3e-82, score=307)">
      <seq>agatgacaaagggttttgtatcaaaggaaccagtcaaaggacatatggtgaatgttgtgagaggtctcaagttattcgaagacgtttttactccaaatgaaatctctagattagatgaccttgtgaatgaacttcgagttgctggtcaaaatggtgaactctcaggtgaaacttttattctgtacaaccagcaggtgaagggcagcaaaagagagctaattcagcttggtgcaccaatttttgagcatgtaaaagaggacgccacatgtcaaaagagtcacaatgagcccattccagcccttctgcaaggtgtcataaaccacctgattcagtggcatctaatatcagagagtagaaggcctaacagctgcatcatcaacttttttgatgagggggagttttcacagcctttcctgaaaccacctcacttggaacagccagtgtccacccttgtcctagctgactcaatgatggcatttgggcgaacacttgtatgcgacagtgaagggaactacaaaggctctctcatgctttctctaaaagaagggtctcttttggtcatgaggggaaacagtgctgatatggccagacatgctatgtgctcatctcctaacaagagagttacgattacattcttcaaagtcagaacagagatgggaaccaacttttcagaagctgctcctctgactagagccatgaccatatggcaacctggtgttccaacacaatatgcaactgcaaatagagcacacaatggttatgagccaatggatatggtccccaaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="6512" stop="8870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6812" g_stop="6858" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6859" i_stop="6950" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6951" g_stop="7068" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="165" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7069" i_stop="7466" i_length="398">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7467" g_stop="7577" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="276" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7578" i_stop="7730" i_length="153">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7731" g_stop="7846" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="392" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7847" i_stop="7937" i_length="91">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7938" g_stop="8092" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="547" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8093" i_stop="8328" i_length="236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8329" g_stop="8570" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="789" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-U330013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6812" e_stop="6858"/>
          <exon e_start="6951" e_stop="7068"/>
          <exon e_start="7467" e_stop="7577"/>
          <exon e_start="7731" e_stop="7846"/>
          <exon e_start="7938" e_stop="8092"/>
          <exon e_start="8329" e_stop="8570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGACAAAGGGTTTTGTATCAAAGGAACCAGTCAAAGGACATATGGCGAGTCCTCCATTTCCTTGTTACTTTACATCCATTTTGGTAGGATATAAATGTTGTGAAGATCTTAAATTTCCCTACATTGTTTCTGGCAGGTGAATGTTGTGAGAGGTCTCAAGTTATTCGAAGACGTTTTTACTCCAAATGAAATCTCTAGATTAGATGACCTTGTGAATGAACTTCGAGTTGCTGGTCAAAATGGTGAACTCTCAGGTGGATCCTGTGATTCGTGACGCTTTTATAGTTATTGTTGTTTCCTTTTTGGGGCGAAGTTATGAGATAGTAAAAGGACACCTTCTGTAGGTTTGCTGGAGCAGGTTTGAGCATTTGTTTATTCTTTATGACTAATTGCAGCTGCCTTAAAATCATTGTTTGTGACTTGGTGCTTGAGGTTGATACCTAACTTTGTTTTCACTTAAACTTCTCTTTTGCTTATAATCTGATGAATCAAACAAGCACCAAAAAACATCAACTAAAATTAAACTTTCTTCTACTTTTTTGGTAGCCTTGTCAAGTTTTGCGATACCAGCAATGCCAATTCTGATGAACTATTTACTTCTCCAATATGTGATCTTGGATAAGTTCCTGATTGATCTGTGACTCTGTTTCAGGTGAAACTTTTATTCTGTACAACCAGCAGGTGAAGGGCAGCAAAAGAGAGCTAATTCAGCTTGGTGCACCAATTTTTGAGCATGTAAAAGAGGACGCCACATGTCAAAAGAGTAAGAAAAAACGCATCTTAATACATAACACTTGTTGTTGCTATTTGTGGTATACAAAACTTGACCATTGTATACCCCCAATTCTCCTCAACTTTAATCTCCAGTTCTTATTCTTTCATACCTATCATAACTTGGAAAAATGCCAACTTTCAGGTCACAATGAGCCCATTCCAGCCCTTCTGCAAGGTGTCATAAACCACCTGATTCAGTGGCATCTAATATCAGAGAGTAGAAGGCCTAACAGCTGCATCATCAACTTTTTTGATGAGGTATTTGCATTTATTCTAGAATTATGTTGGCCTGCAACATTTTTATCAGTATAGAAATGAAGCCTAAATGCTTGTCTGCTGCCTATTTTAGGGGGAGTTTTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTGTCCACCCTTGTCCTAGCTGACTCAATGATGGCATTTGGGCGAACACTTGTATGCGACAGTGAAGGGAACTACAAAGGCTCTCTCATGCTTTCTCTAAAAGAAGGGTATGTTTTTCATTTCTTTTAGGTGTTTTACATTGATGAAGCTTTTGATCTGTAGTTCAGATGGGTTCAGTAGTTACAATCTTATTTTAGAAATGAATAGACTTTGGCAGAGTTTCAGCCATAACATGAAGTCTTTTCTTCAATGTTTGTTGAAGTTCAATTTGATGATCGTCCCTATAAAACAAATGACTATTCTTATGGTTGGTTTTTTGCTACCTGTTGTTTAATATTTGCAGGTCTCTTTTGGTCATGAGGGGAAACAGTGCTGATATGGCCAGACATGCTATGTGCTCATCTCCTAACAAGAGAGTTACGATTACATTCTTCAAAGTCAGAACAGAGATGGGAACCAACTTTTCAGAAGCTGCTCCTCTGACTAGAGCCATGACCATATGGCAACCTGGTGTTCCAACACAATATGCAACTGCAAATAGAGCACACAATGGTTATGAGCCAATGGATATGGTCCCCAAATGGG</genome_strand>
        <mrna_strand>AGATGACAAAGGGTTTTGTATCAAAGGAACCAGTCAAAGGACATATG............................................................................................GTGAATGTTGTGAGAGGTCTCAAGTTATTCGAAGACGTTTTTACTCCAAATGAAATCTCTAGATTAGATGACCTTGTGAATGAACTTCGAGTTGCTGGTCAAAATGGTGAACTCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACTTTTATTCTGTACAACCAGCAGGTGAAGGGCAGCAAAAGAGAGCTAATTCAGCTTGGTGCACCAATTTTTGAGCATGTAAAAGAGGACGCCACATGTCAAAAGA.........................................................................................................................................................GTCACAATGAGCCCATTCCAGCCCTTCTGCAAGGTGTCATAAACCACCTGATTCAGTGGCATCTAATATCAGAGAGTAGAAGGCCTAACAGCTGCATCATCAACTTTTTTGATGAG...........................................................................................GGGGAGTTTTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTGTCCACCCTTGTCCTAGCTGACTCAATGATGGCATTTGGGCGAACACTTGTATGCGACAGTGAAGGGAACTACAAAGGCTCTCTCATGCTTTCTCTAAAAGAAGG............................................................................................................................................................................................................................................GTCTCTTTTGGTCATGAGGGGAAACAGTGCTGATATGGCCAGACATGCTATGTGCTCATCTCCTAACAAGAGAGTTACGATTACATTCTTCAAAGTCAGAACAGAGATGGGAACCAACTTTTCAGAAGCTGCTCCTCTGACTAGAGCCATGACCATATGGCAACCTGGTGTTCCAACACAATATGCAACTGCAAATAGAGCACACAATGGTTATGAGCCAATGGATATGGTCCCCAAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339429" ref_strand="+" ref_description="SGN-U339429        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to A. thaliana hypothetical protein T13L16.2, GenBank accession number 2708738; contains Pfam domain PF03171 2OG-Fe(II) oxygenase superfamily | chr4:1306503-1310938 FORWARD | Aliases: T4I9.18, T4I9_18(evalue: 1e-18, score=90.9) genbank/nr: gi|3924611|gb|AAC79112.1| hypothetical protein [Arabidopsis thaliana] >gi|7269779|emb|CAB77779.1| hypothetical protein [Arabidopsis thaliana] >gi|22136492|gb|AAM91324.1| unknown protein [Arabidopsis thaliana] >gi|20260288|gb|AAM13042.1| unknown protein [Arabidopsis thaliana] >gi|15236223|ref|NP_192203.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (evalue: 8e-17, score=90.9)">
      <seq>aaccagtcaaaggacatatggtgaatgttgtgagaggtctcaagttattcgaagacgtttttactccaaatgaaatctctagattagatgaccttgtgaatgaacttcgagttgctggtcaaaatggtgaactctcaggtggatcctgtgattcgtgacgcttttatagttattgttgtttcctttttggggcgaagttatgagatagtaaaaggacaccttctgtaggtttgctggagcaggtttgagcatttgtttattctttatgactaattgcagctgccttaaaatcattgtttgtgacttggtgcttgaggttgatacctaactttgttttcacttaaacttctcttttgcttataatctgatgaatcaaacaagcaccaaaaaacatcaactaaaattaaactttcttctacttttttggtagccttgtcaagttttgcgataccagcaatgccaattctgatgaactatttacttctccaatatgtgatcttggataagttcctgattgatctgtgactctgtttcaggtgaaacttttattctgtacaaccagcaggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="6539" stop="7800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6839" g_stop="6858" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6859" i_stop="6950" i_length="92">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6951" g_stop="7500" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="570" r_length="550" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-U339429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6839" e_stop="6858"/>
          <exon e_start="6951" e_stop="7500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAGTCAAAGGACATATGGCGAGTCCTCCATTTCCTTGTTACTTTACATCCATTTTGGTAGGATATAAATGTTGTGAAGATCTTAAATTTCCCTACATTGTTTCTGGCAGGTGAATGTTGTGAGAGGTCTCAAGTTATTCGAAGACGTTTTTACTCCAAATGAAATCTCTAGATTAGATGACCTTGTGAATGAACTTCGAGTTGCTGGTCAAAATGGTGAACTCTCAGGTGGATCCTGTGATTCGTGACGCTTTTATAGTTATTGTTGTTTCCTTTTTGGGGCGAAGTTATGAGATAGTAAAAGGACACCTTCTGTAGGTTTGCTGGAGCAGGTTTGAGCATTTGTTTATTCTTTATGACTAATTGCAGCTGCCTTAAAATCATTGTTTGTGACTTGGTGCTTGAGGTTGATACCTAACTTTGTTTTCACTTAAACTTCTCTTTTGCTTATAATCTGATGAATCAAACAAGCACCAAAAAACATCAACTAAAATTAAACTTTCTTCTACTTTTTTGGTAGCCTTGTCAAGTTTTGCGATACCAGCAATGCCAATTCTGATGAACTATTTACTTCTCCAATATGTGATCTTGGATAAGTTCCTGATTGATCTGTGACTCTGTTTCAGGTGAAACTTTTATTCTGTACAACCAGCAGGTGAA</genome_strand>
        <mrna_strand>AACCAGTCAAAGGACATATG............................................................................................GTGAATGTTGTGAGAGGTCTCAAGTTATTCGAAGACGTTTTTACTCCAAATGAAATCTCTAGATTAGATGACCTTGTGAATGAACTTCGAGTTGCTGGTCAAAATGGTGAACTCTCAGGTGGATCCTGTGATTCGTGACGCTTTTATAGTTATTGTTGTTTCCTTTTTGGGGCGAAGTTATGAGATAGTAAAAGGACACCTTCTGTAGGTTTGCTGGAGCAGGTTTGAGCATTTGTTTATTCTTTATGACTAATTGCAGCTGCCTTAAAATCATTGTTTGTGACTTGGTGCTTGAGGTTGATACCTAACTTTGTTTTCACTTAAACTTCTCTTTTGCTTATAATCTGATGAATCAAACAAGCACCAAAAAACATCAACTAAAATTAAACTTTCTTCTACTTTTTTGGTAGCCTTGTCAAGTTTTGCGATACCAGCAATGCCAATTCTGATGAACTATTTACTTCTCCAATATGTGATCTTGGATAAGTTCCTGATTGATCTGTGACTCTGTTTCAGGTGAAACTTTTATTCTGTACAACCAGCAGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331579" ref_strand="+" ref_description="SGN-U331579        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to A. thaliana hypothetical protein T13L16.2, GenBank accession number 2708738; contains Pfam domain PF03171 2OG-Fe(II) oxygenase superfamily | chr4:1306503-1310938 FORWARD | Aliases: T4I9.18, T4I9_18(evalue: 2e-12, score=68.6) genbank/nr: gi|3924611|gb|AAC79112.1| hypothetical protein [Arabidopsis thaliana] >gi|7269779|emb|CAB77779.1| hypothetical protein [Arabidopsis thaliana] >gi|22136492|gb|AAM91324.1| unknown protein [Arabidopsis thaliana] >gi|20260288|gb|AAM13042.1| unknown protein [Arabidopsis thaliana] >gi|15236223|ref|NP_192203.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (evalue: 1e-10, score=68.6)">
      <seq>ggaggtgttgttcgatctccaatggttatgctggcaccactgcgtccagtagttatgaatccccggagggctcctcgtggtggtactggtgtatttcttccatggaatggtggatccagaaaacctgcaaagcatcttccaccgcgtgctcaaagaggacggttccttgcactacctccccctggtgactcgcctaaatcagagaccgcttcagaaccaagtttggatcttgatggcaaatcaccatagattctctagtttgaagtctttaaataccctttgtagctgaaggggctttctcctactgtgtacaatgagtgagcatgaattcgctttcttttttcttatgggttttcaaaggttttccttctctttttatttacgtagagactaggcgttggctactatacctgttcacctatgtgataggctttagagataactgagcttaggtaaatggagtgtatattagccaaacaacaggctgaattttgtattaaagttttcgtttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="8270" stop="9385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8570" g_stop="9083" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="524"/>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-U331579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8570" e_stop="9083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGTTGTTCGATCTCCAATGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGGAGGGCTCCTCGTGGTGGTACTGGTGTATTTCTTCCATGGAATGGTGGATCCAGAAAACCTGCAAAGCATCTTCCACCGCGTGCTCAAAGAGGACGGTTCCTTGCACTACCTCCCCCTGGTGACTCGCCTAAATCAGAGACCGCTTCAGAACCAAGTTTGGATCTTGATGGCAAATCACCATAGATTCTCTAGTTTGAAGTCTTTAAATACCCTTTGTAGCTGAAGGGGCTTTCTCCTACTGTGTACAATGAGTGAGCATGAATTCGCTTTCTTTTTTCTTATGGGTTTTCAAAGGTTTTCCTTCTCTTTTTATTTACGTAGAGACTAGGCGTTGGCTACTATACCTGTTCACCTATGTGATAGGCTTTAGAGATAACTGAGCTTAGGTAAATGGAGTGTATATTAGCCAAACAACAGGCTGAATTTTGTATTAAAGTTTTCGTTTTTA</genome_strand>
        <mrna_strand>GGAGGTGTTGTTCGATCTCCAATGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGGAGGGCTCCTCGTGGTGGTACTGGTGTATTTCTTCCATGGAATGGTGGATCCAGAAAACCTGCAAAGCATCTTCCACCGCGTGCTCAAAGAGGACGGTTCCTTGCACTACCTCCCCCTGGTGACTCGCCTAAATCAGAGACCGCTTCAGAACCAAGTTTGGATCTTGATGGCAAATCACCATAGATTCTCTAGTTTGAAGTCTTTAAATACCCTTTGTAGCTGAAGGGGCTTTCTCCTACTGTGTACAATGAGTGAGCATGAATTCGCTTTCTTTTTTCTTATGGGTTTTCAAAGGTTTTCCTTCTCTTTTTATTTACGTAGAGACTAGGCGTTGGCTACTATACCTGTTCACCTATGTGATAGGCTTTAGAGATAACTGAGCTTAGGTAAATGGAGTGTATATTAGCCAAACAACAGGCTGAATTTTGTATTAAAGTTTTCGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317976" ref_strand="+" ref_description="SGN-U317976        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: None | BSD domain-containing protein, contains Pfam profile PF03909: BSD domain | chr1:822638-824393 REVERSE | Aliases: F15K9.5, F15K9_5(evalue: 4e-62, score=236) genbank/nr: gi|18379088|ref|NP_563683.1| expressed protein [Arabidopsis thaliana] gi|25518353|pir||B86165 hypothetical protein F15K9.5 [imported] - Arabidopsis thaliana gi|3850569|gb|AAC72109.1| ESTs gb|T21276, gb|T45403, and gb|AA586113 come from this gene. [Arabidopsis thaliana] gi|13430432|gb|AAK25838.1| unknown protein [Arabidopsis thaliana] gi|15293191|gb|AAK93706.1| unknown protein [Arabidopsis thaliana](evalue: 3e-60, score=236)">
      <seq>agtctttctctgagagtgggaactgccaactggcaacaacatcctcttcaaaggtgacactttgacagaacactcaaatcaattcttgattccactgcgccatggatttcttcaaatccatcttatcagatgatcccgaaccggaccctccactacccaaaaagccccatgattcttcaccggaaaaggaaattgtaccggatcagaatcttgaaaaacccaattcacgatctgattcaaacgccgccgacggcgctgatggtcctgatgctggtgtttggagtttcggaggtttgttgaagacattatcaacccgatccgaatcagtgctcgagacataccgtcgggatctacaggaattcggatccgggttgaagaaagaaaccgaattgttccgtgaagtagctagtcgagctgttaaggatcttcctaactcgatcgaggtcggaactaccgtcagccacgccattgacggtgttatcaaatcgacaactgagattatatcacaaggtaaagatactcttctcgcttcctctgatgctgaatccgaaaccccagatgcgaatcagaccttgaattcgggtcggtacagtcggtttgaatctcaattgatgaatatccagagtgacccgaatacgttctgtgtggatcctgaggatttggaggagtacaagaagtggaaatctgagtttgatttgaaggaaaatagtaaggaagttgagattttgattgaagaaaatggatctttggaaggtatattcaaaagggttgtgcctaatgaagttgataatgagactttttggtgtcgatatttttataaagtgtataagcttaagcaacaagagagtgtaagagctaatcttgtgaagagagcaatatctatagatgatgaagaagaattgtcttgggatgtcgatgatgatgacgacaataatgaacaagagaacattgccaaatcgaaattcgatgagaagggaaaagagggttctgttgttgaaagctctgtcaatgatgtaaagaaagaatctgccactcaagattcaacaaacgttgcaaaggaagtgcctgctaataagagtgagccaagcaagcaggattcgaccaacattgcaaaggaagtgcctactaataaaagtgaaccaatcacgcaggattcaaccaacgttgcgaaggaagtgcctactaataaaagtgaaccaaacaagcaggattcgaccaacgctgtaaaacaggacgaatcacaaactataagttcggcttctgttgataggaaagaagagagtcagcctaatgtagatggtggtggcaagagtaaggtcgtagaatcagttgggagtaacaaagatagtaagaaagaagacgctgaagttactcctctggttaaaaaggaggaagaggtagtaaaaggttcagaggggaaaagtgataaggatggatcaggcaaagatggtgatgtccctattgcttcaagtcaaaagacgactggggccgatgaggacgacttggattgggatgagattgaggacgttgacggtattgatgacaaaaaggcaacttctcatgttgcaagcaccaatagagatgatttgaggaagaggcttagtgttgaagaggacgatgaggatttgagttgggattgaagatgatgacaaccctgtgaaagctttttgatcgtcattcaaaatatgcagaaagctggatgtcaatgctgtcaacgtacaacagaactcaagaattaaactttaaagcttgaaacctagtaaagtaagataacgtttattgtctcaggcagtttgtttaattgtgcttcatgattttcattcttttcattttacttttagcttagtagtcgcgatttccatgtctagctgttcatttataatgtgaacatgttttgtgccctttgtatacttgggaaatttgaatgaaagcaatgatgttcatagacnannaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="12704" stop="10155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12404" g_stop="10454" g_length="1951"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1951" r_length="1951" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1953" polyA_stop="1968"/>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-U317976" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1951</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12404" e_stop="10454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTTTCTCTGAGAGTGGGAACTGCCAACTGGCAACAACATCCTCTTCAAAGGTGACACTTTGACAGAACACTCAAATCAATTCTTGATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCGGCTTCTGTTGATAGGAAAGAAGAGAGTCAGCCTAATGTAGATGGTGGTGGCAAGAGTAAGGTCGTAGAATCAGTTGGGAGTAACAAAGATAGTAAGAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAGGACGACTTGGATTGGGATGAGATTGAGGACGTTGACGGTATTGATGACAAAAAGGCAACTTCTCATGTTGCAAGCACCAATAGAGATGATTTGAGGAAGAGGCTTAGTGTTGAAGAGGACGATGAGGATTTGAGTTGGGATTGAAGATGATGACAACCCTGTGAAAGCTTTTTGATCGTCATTCAAAATATGCAGAAAGCTGGATGTCAATGCTGTCAACGTACAACAGAACTCAAGAATTAAACTTTAAAGCTTGAAACCTAGTAAAGTAAGATAACGTTTATTGTCTCAGGCAGTTTGTTTAATTGTGCTTCATGATTTTCATTCTTTTCATTTTACTTTTAGCTTAGTAGTCGCGATTTCCATGTCTAGCTGTTCATTTATAATGTGAACATGTTTTGTGCCCTTTGTATACTTGGGAAATTTGAATGAAAGCAATGATGTTCATAGACAAA</genome_strand>
        <mrna_strand>AGTCTTTCTCTGAGAGTGGGAACTGCCAACTGGCAACAACATCCTCTTCAAAGGTGACACTTTGACAGAACACTCAAATCAATTCTTGATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCGGCTTCTGTTGATAGGAAAGAAGAGAGTCAGCCTAATGTAGATGGTGGTGGCAAGAGTAAGGTCGTAGAATCAGTTGGGAGTAACAAAGATAGTAAGAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAGGACGACTTGGATTGGGATGAGATTGAGGACGTTGACGGTATTGATGACAAAAAGGCAACTTCTCATGTTGCAAGCACCAATAGAGATGATTTGAGGAAGAGGCTTAGTGTTGAAGAGGACGATGAGGATTTGAGTTGGGATTGAAGATGATGACAACCCTGTGAAAGCTTTTTGATCGTCATTCAAAATATGCAGAAAGCTGGATGTCAATGCTGTCAACGTACAACAGAACTCAAGAATTAAACTTTAAAGCTTGAAACCTAGTAAAGTAAGATAACGTTTATTGTCTCAGGCAGTTTGTTTAATTGTGCTTCATGATTTTCATTCTTTTCATTTTACTTTTAGCTTAGTAGTCGCGATTTCCATGTCTAGCTGTTCATTTATAATGTGAACATGTTTTGTGCCCTTTGTATACTTGGGAAATTTGAATGAAAGCAATGATGTTCATAGACNAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320904" ref_strand="+" ref_description="SGN-U320904        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | galactinol synthase, putative, contains Pfam profile: PF01501 glycosyl transferase family 8 | chr3:1893810-1894865 REVERSE | Aliases: F28L1.20, F28L1_20(evalue: 2e-79, score=292) genbank/nr: gi|15230679|ref|NP_187277.1| galactinol synthase, putative [Arabidopsis thaliana] gi|6862930|gb|AAF30319.1| putative glycosyl transferase [Arabidopsis thaliana](evalue: 1e-77, score=292)">
      <seq>ttgacattaatattattactatatcaaatgcaaacagctggatggcctaaaggagcctttcttcttctcttcctctccttggcctcctgtctctcttgctttcccatcaaacctccttgatcacatccactaacaacgacaacgttaacattcatcaggtgtcagatggacgggttgggtcaaactcttctgtattccgtgaggcccctgcatttcgcaatggggacacttgtggtaataatgatagaatgcatgtggctatgacacttgatgctaattatttaagaggtactatggctgcagtgttatcgatattacaacattcaacgtgccctgaagacgttacgtttcatttcctatgggttagacatgaagatgaggtgttttcgagtattaaggcaacattcccttaccttaatttcaaggtgtatcgatttgatgtacatagggtacgtggcctaatctctaagtctatacgtcaagctttagatcaacctttgaattatgccaggatttatttggctaatttgatacctaatgaggtgaaacgcgttatttatcttgattctgaccttgtcatggttgatgacatcgcaaagttatggaaggttgatttaggtgacaaggttttggctgcacctgaatattgtcaagcaaatttcaccgtttattttactgaagcgttttggtctgatccttatatgccaagaacatttgaagggcgaaaaccgtgttatttcaacacaggggtgttggtaatggatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="17198" stop="15833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16898" g_stop="16132" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-U320904" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16898" e_stop="16132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACATTAATATTATTACTATATCAAATGCAAAGAGCTGGATGGCCTTTTGGAGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACCTTTCATTTCCTATGGGTTAGACATGAACATGAGGTGTTTTCGAGTATTAAGGCAACGTTTCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATATCTAAGTCTATACGTCAAGCTTTAGATCAACCGTTGAATTATGCCAGGATTTATTTGGCTAATTTAATACCTAATGAGGTGAAACGCGTTATTTATCTTGATTCTGACCTTGTCATGGTTGATGACATCGCAAAGTTATGGAAGGTTGAATTAGGTGACAAGGTTTTGGCTGCACCTGAATATTGTCAAGCAAATTTCACCGTTTATTTTACTGAAGCGTTTTGGTCTGATCCTTATATGCCAAGAACATTTGAAGGGCGAAAACCGTGTTATTTCAACACGGGGGTGTTGGTAATGGATGTT</genome_strand>
        <mrna_strand>TTGACATTAATATTATTACTATATCAAATGCAAACAGCTGGATGGCCTAAAGGAGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAACGACAACGTTAACATTCATCAGGTGTCAGATGGACGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACGTTTCATTTCCTATGGGTTAGACATGAAGATGAGGTGTTTTCGAGTATTAAGGCAACATTCCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATCTCTAAGTCTATACGTCAAGCTTTAGATCAACCTTTGAATTATGCCAGGATTTATTTGGCTAATTTGATACCTAATGAGGTGAAACGCGTTATTTATCTTGATTCTGACCTTGTCATGGTTGATGACATCGCAAAGTTATGGAAGGTTGATTTAGGTGACAAGGTTTTGGCTGCACCTGAATATTGTCAAGCAAATTTCACCGTTTATTTTACTGAAGCGTTTTGGTCTGATCCTTATATGCCAAGAACATTTGAAGGGCGAAAACCGTGTTATTTCAACACAGGGGTGTTGGTAATGGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332050" ref_strand="-" ref_description="SGN-U332050        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | exonuclease family protein, similar to Exosome complex exonuclease RRP4 (Ribosomal RNA processing protein 4)(SP:P38792) {Saccharomyces cerevisiae} | chr1:824561-826179 FORWARD | Aliases: F15K9.4, F15K9_4(evalue: 2e-115, score=412) genbank/nr: gi|15218790|ref|NP_171835.1| expressed protein [Arabidopsis thaliana] gi|25513487|pir||C86165 F15K9.4 protein - Arabidopsis thaliana gi|3850568|gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142. [Arabidopsis thaliana] gi|34365689|gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana](evalue: 2e-113, score=412)">
      <seq>gattgtacaagcttggcaaacagggtttaagagaggttttagggtttcttctgcactagttcttcttcttcttccttttgttcacaaaatcagaaaaaaatgagaggaatacagttatctttcagcaacacccaaaagctaagattagaaaaagcattagcgcaattggaatccttttcttcgaagcttaattccaatgccactgtcattgttgcagacaaaattccagtcgacgaagatgctgccctcaaaggacatgggacgttggagatgggcaatgatgttgttgcaagtgtatgtggagtggttgagcgggtgaataagcttgtttatgttagacctttaagggccaggtataagccggagattggtgatattatagtcggccgcgttattgaggttgctccaaagagatggaggttggaaattaatttcagccaagacgctgtactaatgctctcttctatgaatcttccagatggcattcagaggcggcgaacagcagttgatgaactcaatatgcgaagcatatttgtggagaatgatgtcatctgtgctgaagtccgtggtttccaacatgatgggagtctacacctccaagctagaagccaaaagtatggaaagcttgaaagagggaaactactcaaaatccctccatatctagtgaaaaggcgtaaacagcatttccaccatctagatcagtatggagttgacttgatttttggctgcaatggattaatttgggttggggaacacattgatgtaaaagatgtaatggtggaggatcaagtaaataagtccgatccacagaacacccattcatcaagcttaccaggttctagtgaagaaccaactgatacaccactggaaataagacaatatatatgcaggatagcaaatgccatcactgtattctcagctttaggcttcatggttaatttggactccataatggagacagttaccttgagcttatctttaaaccttggtgtacatgagatgcttgaagcagaattccatgttcgagttgctgagcaagaagctgaacgacggagcacatcaaaaaggaggagatagtttacaactcatcatctacatttgcctttcttggattgtcgattatgcaaaagatagaagagattaggaatctattaagctgaatcgggtagcggtatgtcaccctttaattgaaaaagatctgtaaaagagtttccttctgaatatccccttaaattcacacttttgatttatgtgcattagtaaggagtgtgcagctgaagatcaaagtttttcttcccagcaatgaaaatttttcttatgttttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="+" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="21705" stop="27055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22004" g_stop="22254" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22255" i_stop="22390" i_length="136">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22391" g_stop="22492" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="353" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22493" i_stop="22569" i_length="77">
            <donor d_prob="0.438" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22570" g_stop="22615" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="399" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22616" i_stop="23366" i_length="751">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23367" g_stop="23456" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="489" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23457" i_stop="24484" i_length="1028">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24485" g_stop="24550" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="555" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24551" i_stop="24745" i_length="195">
            <donor d_prob="0.345" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24746" g_stop="24814" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="624" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24815" i_stop="26053" i_length="1239">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26054" g_stop="26755" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="1326" r_length="702" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1327" polyA_stop="1359"/>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="+" ref_id="SGN-U332050" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1326</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332050" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22004" e_stop="22254"/>
          <exon e_start="22391" e_stop="22492"/>
          <exon e_start="22570" e_stop="22615"/>
          <exon e_start="23367" e_stop="23456"/>
          <exon e_start="24485" e_stop="24550"/>
          <exon e_start="24746" e_stop="24814"/>
          <exon e_start="26054" e_stop="26755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTACAAGCTTGGCAAACAGGGTTTAAGAGAGGTTTTAGGGTTTCTTCTGCACTAGTTCTTCTTCTTCTTCCTTTTGTTCACAAAATCAGAAAAAAATGAGAGGAATACAGTTATCTTTCAGCAACACCCAAAAGCTAAGATTAGAAAAAGCATTAGCGCAATTGGAATCCTTTTCTTCGAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACAAAATTCCAGTCGACGAAGATGCTGCCCTCAAGTAAGTAGTTGGGGTTCTTCTATATGAATCATTTGTATCTACTCTACAACCCCTTTTTGTTCAAATTAAGAAAATAGGTGTTGATTTCATTTTTCCGATTTTTGGTATCTGACCCATTTTTGTTTGTTGAATGAAGAGGACATGGGACGTTGGAGATGGGCAATGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATAAGCTTGTTTATGTTAGACCTTTAAGGGCCAGGTTTAGTGTTTAAAGTTTGAATTTTTGTTGATTTTAAGCTTGATTTTAAGGTGAAAAAAGGGTTCTTTTTAATGTAGGTATAAGCCGGAGATTGGTGATATTATAGTCGGCCGCGTTATTGAGGTGAGTCTGATTCCCTGCAATGAGTTTCTTGTCAAGTTTGCTTCTTTCATGTTTAGGTGTTTCATTTGCTGCTAGCTCTTACATCGGTTTCTTCCAAAAATATTGAAAATTGAGTAATCTTTGCTCCTTTTATGTTTAAGTGCTTATAATTAGAAGTTTAATGCTAGTGTATGGACAATTTGTTTCTAGTTGATTGAATCGGTATTTTTGGGTAGTACTGTAGTAGTTAGAAACCTCAATTGATACGAAAGTCGAAACCTGTTGCAATGGTAAAGTTGCTCTCTTTAGTGACTGGTAGGTCATGAGTTCAAGGCTTGGAATCAACTTATTTTCAATCTACCATTTTCCCCTTACCATGCCTAACCCCGGGAGCATCTTGTTCAAAGTTCACTTAGCAAAATGCAACTCTCTCCTAATGTATCCCCAGGTAATTGTAAGGGATAGGATAGAGAGTTAAATTATTTCCGCTGCTCTTCAGGTTTTCCTAGTATGATCATAAATTCATAATAGCGTGGGTTTTTTCACTCTACCATTTGTTAGAGAAATATATTAGCCTTCACATTAATATATGGATAATCTAATTGTGCATGCCTTTGGTGCTGAATTTCAAAGAAAGGGCACTAAGAGAACATAAAGGAAAAGAACACATGTGTCCTCCTTTTTACTTGTCTCCATTTACTTTGGCAAGAAATATTAATGTTTCTTGCGGTTAGATATATATCTAATGATTATTAATATTCTTGATGTAAAGGTTGCTCCAAAGAGATGGAGGTTGGAAATTAATTTCAGCCAAGACGCTGTACTAATGCTCTCTTCTATGAATCTTCCAGATGGCATTCAGGTTATTGTTTACAATGTCACTAAGCCCATTTGAGCATAATCTCTGAATTGATTTTGGTCCCATGATGTGATGGTTATATTTTCTGGATAATTCACTAGTCAAGATTGTGTAATTTGGAGTCCTTATTGCATCTTGTCTGCATGTAAAGAAACATTTGTAAGGAATCAGTTGAGCACCGAAATCAGGACCTCCTTTATTCTGTGTCACCATATGTACCCACTTGTGACACTGCATATTGAAATCCTAGAGAAAAAAGAGCTGAAAAGATTTTCCTATGGCTGTTTTATATCATTTTTCCAAATTCTTCAGTTTCAACCCCCTCCGCCTCTGTGGCTTAAGACCCTAGTCTATTTCACTTTAGCAGCAGGGAACCAACTTTGCTCCTCTTTGAAGAAGTCATCTCTTTAACTTCCTTTGGTAACATGAATCGAATAGCCCAATGGATCTATAAGTCCAAGATAGCATGGATTCATATGGCCTACCCCAACTTGTTTGGGATCGAGGCACATTTGCTGTGGACCTGTGGTTGTAAAGGATTCACTTCTGCCTTGGAGAGTAAGATGAACTTTGTCCAGCTTTTAACTCTATGCACAATCTCATATTTTAAAGAACACTGCTGTCTCAACATTTAAATAATTAGACCTTCATGGGCAACAAGTTTCTCCCCAATTCCATTCTCTAAATTTATCATAACAGTACAGTGAATTTATCAAACTAGTATAACTTCTATTATTGTTCAATAAATGAGCCCACTGCCTGAAGCTTGCTTAAAGAGATCTGAAGTTCCCAAGGTATTGAAACTAAAGAGTTAGAAGGGTGACATGCCTATAGAAGTTCGATCTTGACTTGTGACTCGACCTGTAGAGCAGATACAACTTTTGAAGTTTGTCCCCTGAAGCAAATATACACTTCCTTTTCCTTTTTGTTTCCCTGAATTTCTGTCATTATGTTGCATTCTTTTAGGTCTTACTTAGTCATGGTCATAGTCAAACTAAAATTAACTACTTCCTCTTATTCTATGATTCCAGAGGCGGCGAACAGCAGTTGATGAACTCAATATGCGAAGCATATTTGTGGAGAATGATGTCATCTGTGTAAGCTCCCCAGCTCCTTTGACTATTTATCAAATTCTTGAAGGGACCATTTTATGTGTGGCATCCATCTGTGGATTATGATGAATGCAATTATGTCTCGTCTGTCCTTACTGATTATATGTGCATGTCATTCTCCTTTTATTTTATTTTATTTTCTGCAAGTATGGTAATCTAAGCGAAATTGTCCATCTTCAGGCTGAAGTCCGTGGTTTCCAACATGATGGGAGTCTACACCTCCAAGCTAGAAGCCAAAAGTATGGAAAGGTGTGTTTTCATAATTGAAATTAGAACACTAAATTTTGTTTCAGAGTTATTGTTTTGATTATCAGGTTGGAAATAAGCACCTCATTTTCTCACCTTTTCCTCCTCCTACCTGTTTGACCATAAAAGCTTTGTGTGGGAGTAGGACTGGGATTCAAATTCAATCTCCACAAGGTGGGGGATATACATTTCTAGCATTCACAAGAGATTTTAGGTAGATGGATTTATGGTTAATTAAAACCATGGATTAAACTTTTCCCATTTAAAAAGCGTAAAATAATTTTGCATAATAGCTGGGATGGAGTTGCTTGCTTGTAGGAAGCAGGAAGATGATATGTCTGATGAAATTTTTGAAGTTAATCTTAATTTTCCACGGTCTAACGAGTTCTCTGTCTTGTCCCGGATACACTCTAGACGTGAATAGCACTCAATATCACTATCTAGGCGAACCAAATCCCGATATCTTAAGCATTAATTTGCCACATTTAATAAATCTATTAAGTACCCTAACAATATGATAATTAATTACAAAATAATAAGTATCTTCAAATATTAATTTAAGCTCTTGGCAAAACCCCACAGTAGACCGCATATCAGTGTTCAGGAAAGTGAGTGCAGCAATGAAGCAAAGCGATTCGAGCCTTCTACGCTTCACAGACTAGAATGAGTATGTCAGCGCTTCATCGCTTAAAGCAAGCTCTTCATTGCTTAAAGCGTGAAGCGGGGCGTTATCGCTTTTTTCCGCTTCACGCTTCCCTGAACACTGCCGCATATATTTTAAACCATGTCTATATTTCAATGGATTAAAATGAATCTGTCTGTGAATATAAAGGACAATATTAGTTAAAACCTCATGGTACAAACGGCAGAAGTTTTACTTAAGCAGATGATCTGACCATAAAGTTCGAATAGAGAATACAAAGGACCTTGACATGATCTGCATTAGATTGTTATTTTGCTTTAAATACTGGCAAGAAGGCCTTTTATATGCTGCTGATATCACCATCACATAGAGCTATACTTTTCAGTTGCTTCTCGTCATGTTACGTCTCTTTTTCTTGGGGTGGTCAGTGGAATGAAATGTGCATTTTTACCTAAGCTTTGCAATTTTTGTTTGTCCCCTTGAATATATTTCAGATTTCAGACATTAATTATCAATTTGTTTGAGAACATATGCTCTGATGATTTGGTGTTTCTAGTGGTTGAGTTCTTCTGAACAATTCTATTTTTCCTTTTTAATAGCTTGAAAGAGGGAAACTACTCAAAATCCCTCCATATCTAGTGAAAAGGCGTAAACAGCATTTCCACCATCTAGATCAGTATGGAGTTGACTTGATTTTTGGCTGCAATGGATTAATTTGGGTTGGGGAACACATTGATGTAAAAGATGTAATGGTGGAGGATCAAGTAAATAAGTCCGATCCACAGAACACCCATTCATCAAGCTTACCAGGTTCTAGTGAAGAACCAACTGATACACCACTGGAAATAAGACAATATATATGCAGGATAGCAAATGCCATCACTGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCATAATGGAGACAGTTACCTTGAGCTTATCTTTAAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGAGTTGCTGAGCAAGAAGCTGAACGACGGAGCACATCAAAAAGGAGGAGATAGTTTACAACTCATCATCTACATTTGCCTTTCTTGGATTGTCGATTATGCAAAAGATAGAAGAGATTAGGAATCTATTAAGCTGAATCGGGTAGCGCTATGTCACCCTTTAATTGAAAAAGATCTGTAAAAGAGTTTCCTTCTGAATATCCCCTTAAATTCACACTTTTGATTTATGTGCATTAGTAAGGAGTGTGCAGCTGAAGATCAAAGTTTTTCTTCCCAGCAATGAAAATTTTTCTTATGTTTTCA</genome_strand>
        <mrna_strand>GATTGTACAAGCTTGGCAAACAGGGTTTAAGAGAGGTTTTAGGGTTTCTTCTGCACTAGTTCTTCTTCTTCTTCCTTTTGTTCACAAAATCAGAAAAAAATGAGAGGAATACAGTTATCTTTCAGCAACACCCAAAAGCTAAGATTAGAAAAAGCATTAGCGCAATTGGAATCCTTTTCTTCGAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACAAAATTCCAGTCGACGAAGATGCTGCCCTCAA........................................................................................................................................AGGACATGGGACGTTGGAGATGGGCAATGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATAAGCTTGTTTATGTTAGACCTTTAAGGGCCAG.............................................................................GTATAAGCCGGAGATTGGTGATATTATAGTCGGCCGCGTTATTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTCCAAAGAGATGGAGGTTGGAAATTAATTTCAGCCAAGACGCTGTACTAATGCTCTCTTCTATGAATCTTCCAGATGGCATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCGAACAGCAGTTGATGAACTCAATATGCGAAGCATATTTGTGGAGAATGATGTCATCTGT...................................................................................................................................................................................................GCTGAAGTCCGTGGTTTCCAACATGATGGGAGTCTACACCTCCAAGCTAGAAGCCAAAAGTATGGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAAGAGGGAAACTACTCAAAATCCCTCCATATCTAGTGAAAAGGCGTAAACAGCATTTCCACCATCTAGATCAGTATGGAGTTGACTTGATTTTTGGCTGCAATGGATTAATTTGGGTTGGGGAACACATTGATGTAAAAGATGTAATGGTGGAGGATCAAGTAAATAAGTCCGATCCACAGAACACCCATTCATCAAGCTTACCAGGTTCTAGTGAAGAACCAACTGATACACCACTGGAAATAAGACAATATATATGCAGGATAGCAAATGCCATCACTGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCATAATGGAGACAGTTACCTTGAGCTTATCTTTAAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGAGTTGCTGAGCAAGAAGCTGAACGACGGAGCACATCAAAAAGGAGGAGATAGTTTACAACTCATCATCTACATTTGCCTTTCTTGGATTGTCGATTATGCAAAAGATAGAAGAGATTAGGAATCTATTAAGCTGAATCGGGTAGCGGTATGTCACCCTTTAATTGAAAAAGATCTGTAAAAGAGTTTCCTTCTGAATATCCCCTTAAATTCACACTTTTGATTTATGTGCATTAGTAAGGAGTGTGCAGCTGAAGATCAAAGTTTTTCTTCCCAGCAATGAAAATTTTTCTTATGTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346957" ref_strand="+" ref_description="SGN-U346957        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | tRNA methyl transferase family protein, contains Pfam PF03054: tRNA methyl transferase profile; similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61). (Swiss-Prot:Q8ZPZ4) (Salmonella typhimurium) | chr1:19022647-19025175 REVERSE | Aliases: F11M15.16, F11M15_16(evalue: 3e-11, score=66.2) genbank/nr: gi|15223816|ref|NP_175542.1| expressed protein [Arabidopsis thaliana] gi|25298371|pir||H96550 hypothetical protein F11M15.16 [imported] - Arabidopsis thaliana gi|4836940|gb|AAD30642.1| Unknown protein [Arabidopsis thaliana](evalue: 3e-09, score=66.2)">
      <seq>ctttggtcagtcatgttatatgaaaagcaatccactattctttagtttcgttagcgtgatagtgaaaaatttattttcaggtgcttttatggatgccattagtggaatggaatttgactttgttgcttcgggacattatgcaaagattgtccatgcatctactgagcagctggacgaaccttctgtcttggaattgtcaaaagatatggtgtgtttttatattcgtacatgtttcttagagcctcttaccctattttcttttgtaaaagtttgatatgttcacttgagaaggggatatcttgaagatgagagtggtgtggaagagtcttgcttcactgtaggtaaaatgaagaacatatgggaaatgacttacagatatacatggttgggaattaaacattatagtcccatcaaaagaagttcttttgtaagagacagacatttagcagttgaggatacaaagtttgatttaacaccttcccaacccacctagcccccgttgcttttaaccaagatatcttctttgaacttatgatcaacgtctttcacgactgtctgtataattctttcaggtaaatttggtatatgtttcttgagatatattacatttggttcttatcttgaaaaatatagtaaatgtgatgaagcgtcttaagatatatctcataatgaaattgtaatgtagatctcgaaattatgattaaaaacagataaataaaacaaccaaagcaaatatattattctgttgaaggttcatatgtagtatcaatactgctccaagaatgatggttaactaggagttcatcatcttttgatacagaagaaatagtttaatttgccacacttcaattcctgatttactgagagttttacatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLf0041H22-qhfVq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLf0041H22.1" temp_strand="-" temp_description="C09SLf0041H22.1  AC234216.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09SLf0041H22 upload_account_name:spain (1 - 35635)">
        <position start="32540" stop="31063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32241" g_stop="31363" g_length="879"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="879" r_length="879" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLf0041H22.1" gen_strand="-" ref_id="SGN-U346957" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLf0041H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32241" e_stop="31363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGTCAGTCATGTTATATGAAAAGCAATCCACTATTCTTTAGTTTCGTTAGCGTGATAGTGAAAAATTTATTTTCAGGTGCTTTTATGGATGCCATTAGTGGAATGGAATTTGACTTTGTTGCTTCGGGACATTATGCAAAGATTGTCCATGCATCTACTGAGCAGCTGGACGAACCTTCTGTCTTGGAATTGTCAAAAGATATGGTGTGTTTTTATATTCGTACATGTTTCTTAGAGCCTCTTACCCTATTTTCTTTTGTAAAAGTTTGATATGTTCACTTGAGAAGGGGATATCTTGAAGATGAGAGTGGTGTGGAAGAGTCTTGCTTCACTGTAGGTAAAATGAAGAACATATGGGAAATGACTTACAGATATACATGGTTGGGAATTAAACATTATAGTCCCATCAAAAGAAGTTCTTTTGTAAGAGACAGACATTTAGCAGTTGAGGATACAAAGTTTGATTTAACACCTTCCCAACCCACCTAGCCCCCGTTGCTTTTAACCAAGATATCTTCTTTGAACTTATGATCAACGTCTTTCACGACTGTCTGTATAATTCTTTCAGGTAAATTTGGTATATGTTTCTTGAGATATATTACATTTGGTTCTTATCTTGAAAAATATAGTAAATGTGATGAAGCGTCTTAAGATATATCTCATAATGAAATTGTAATGTAGATCTCGAAATTATGATTAAAAACAGATAAATAAAACAACCAAAGCAAATATATTATTCTGTTGAAGGTTCATATGTAGTATCAATACTGCTCCAAGAATGATGGTTAACTAGGAGTTCATCATCTTTTGATACAGAAGAAATAGTTTAATTTGCCACACTTCAATTCCTGATTTACTGAGAGTTTTACATCTTA</genome_strand>
        <mrna_strand>CTTTGGTCAGTCATGTTATATGAAAAGCAATCCACTATTCTTTAGTTTCGTTAGCGTGATAGTGAAAAATTTATTTTCAGGTGCTTTTATGGATGCCATTAGTGGAATGGAATTTGACTTTGTTGCTTCGGGACATTATGCAAAGATTGTCCATGCATCTACTGAGCAGCTGGACGAACCTTCTGTCTTGGAATTGTCAAAAGATATGGTGTGTTTTTATATTCGTACATGTTTCTTAGAGCCTCTTACCCTATTTTCTTTTGTAAAAGTTTGATATGTTCACTTGAGAAGGGGATATCTTGAAGATGAGAGTGGTGTGGAAGAGTCTTGCTTCACTGTAGGTAAAATGAAGAACATATGGGAAATGACTTACAGATATACATGGTTGGGAATTAAACATTATAGTCCCATCAAAAGAAGTTCTTTTGTAAGAGACAGACATTTAGCAGTTGAGGATACAAAGTTTGATTTAACACCTTCCCAACCCACCTAGCCCCCGTTGCTTTTAACCAAGATATCTTCTTTGAACTTATGATCAACGTCTTTCACGACTGTCTGTATAATTCTTTCAGGTAAATTTGGTATATGTTTCTTGAGATATATTACATTTGGTTCTTATCTTGAAAAATATAGTAAATGTGATGAAGCGTCTTAAGATATATCTCATAATGAAATTGTAATGTAGATCTCGAAATTATGATTAAAAACAGATAAATAAAACAACCAAAGCAAATATATTATTCTGTTGAAGGTTCATATGTAGTATCAATACTGCTCCAAGAATGATGGTTAACTAGGAGTTCATCATCTTTTGATACAGAAGAAATAGTTTAATTTGCCACACTTCAATTCCTGATTTACTGAGAGTTTTACATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2230" PGL_stop="2788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2230" e_stop="2788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2230" e_stop="2788" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2230" stop="2788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATACATTACTGTTGCAACAATTTAGACTATTCAAACACAACAAATTTTCAGCTGCCTCCCCAAAAATACTGGAAACTTTCACTCCCCGCATAAAATTCAACTCAAGATGCCGCCGGCAGCCGGCGTTGTTGCGAATTCCGATCGAGTTTCATTTGGTAATTCTATGGTTATCCCTACTCCCGGTGCTCCGGTAATCCAACCAGCTCCAATGACGTCAGACACATACGCTAAGGATGCAATTATAGCGTGGTTCAGAGGTGAATTCGCCGCTGCAAATGCGATTATTGATGCGCTTTGTAATCATATCACTCAGCTGGAAGGCGACCGATCGGAGTACGAACCGGTTTTCTCCGCAATACATCGACGGAGATTGAATTGGATCCCGATTCTTCAGATGCAGAAGTATTACTCGATTGCTGATGTTACGCTTGAACTCCGTAAACTCGCTGCTAGGAAAGTGAGTGATAGAGTCGAGGTCGCCGACGTGAAACAGAGTGAAGTAGTGAAGGAATCGTTTAATGAGAAGATCAATTGTCACGATGAAGACACGGAAAATG</gDNA_template>
            <first_frame> K  Y  I  T  V  A  T  I  *  T  I  Q  T  Q  Q  I  F  S  C  L  P  K  N  T  G  N  F  H  S  P  H  K  I  Q  L  K  M  P  P  A  A  G  V  V  A  N  S  D  R  V  S  F  G  N  S  M  V  I  P  T  P  G  A  P  V  I  Q  P  A  P  M  T  S  D  T  Y  A  K  D  A  I  I  A  W  F  R  G  E  F  A  A  A  N  A  I  I  D  A  L  C  N  H  I  T  Q  L  E  G  D  R  S  E  Y  E  P  V  F  S  A  I  H  R  R  R  L  N  W  I  P  I  L  Q  M  Q  K  Y  Y  S  I  A  D  V  T  L  E  L  R  K  L  A  A  R  K  V  S  D  R  V  E  V  A  D  V  K  Q  S  E  V  V  K  E  S  F  N  E  K  I  N  C  H  D  E  D  T  E  N  </first_frame>
            <second_frame>  N  T  L  L  L  Q  Q  F  R  L  F  K  H  N  K  F  S  A  A  S  P  K  I  L  E  T  F  T  P  R  I  K  F  N  S  R  C  R  R  Q  P  A  L  L  R  I  P  I  E  F  H  L  V  I  L  W  L  S  L  L  P  V  L  R  *  S  N  Q  L  Q  *  R  Q  T  H  T  L  R  M  Q  L  *  R  G  S  E  V  N  S  P  L  Q  M  R  L  L  M  R  F  V  I  I  S  L  S  W  K  A  T  D  R  S  T  N  R  F  S  P  Q  Y  I  D  G  D  *  I  G  S  R  F  F  R  C  R  S  I  T  R  L  L  M  L  R  L  N  S  V  N  S  L  L  G  K  *  V  I  E  S  R  S  P  T  *  N  R  V  K  *  *  R  N  R  L  M  R  R  S  I  V  T  M  K  T  R  K  M </second_frame>
            <third_frame>   I  H  Y  C  C  N  N  L  D  Y  S  N  T  T  N  F  Q  L  P  P  Q  K  Y  W  K  L  S  L  P  A  *  N  S  T  Q  D  A  A  G  S  R  R  C  C  E  F  R  S  S  F  I  W  *  F  Y  G  Y  P  Y  S  R  C  S  G  N  P  T  S  S  N  D  V  R  H  I  R  *  G  C  N  Y  S  V  V  Q  R  *  I  R  R  C  K  C  D  Y  *  C  A  L  *  S  Y  H  S  A  G  R  R  P  I  G  V  R  T  G  F  L  R  N  T  S  T  E  I  E  L  D  P  D  S  S  D  A  E  V  L  L  D  C  *  C  Y  A  *  T  P  *  T  R  C  *  E  S  E  *  *  S  R  G  R  R  R  E  T  E  *  S  S  E  G  I  V  *  *  E  D  Q  L  S  R  *  R  H  G  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2257" stop="2787"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIQTQQIFSCLPKNTGNFHSPHKIQLKMPPAAGVVANSDRVSFGNSMVIPTPGAPVIQPAPMTSDTYAKDAIIAWFRGEFAAANAIIDALCNHITQLEGDRSEYEPVFSAIHRRRLNWIPILQMQKYYSIADVTLELRKLAARKVSDRVEVADVKQSEVVKESFNEKINCHDEDTEN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6812" PGL_stop="9083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6812" e_stop="6858"/>
            <exon e_start="6951" e_stop="7068"/>
            <exon e_start="7467" e_stop="7577"/>
            <exon e_start="7731" e_stop="7846"/>
            <exon e_start="7938" e_stop="8092"/>
            <exon e_start="8329" e_stop="9083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.686" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6812" e_stop="6858" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6859" i_stop="6950" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6951" e_stop="7068" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.686" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7069" i_stop="7466" i_length="398"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7467" e_stop="7577" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="7578" i_stop="7730" i_length="153"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7731" e_stop="7846" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.986">
            <gDNA_intron_boundary i_start="7847" i_stop="7937" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7938" e_stop="8092" e_length="155"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8093" i_stop="8328" i_length="236"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8329" e_stop="9083" e_length="755"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6812" stop="6858"/>
              <exon start="6951" stop="7068"/>
              <exon start="7467" stop="7577"/>
              <exon start="7731" stop="7846"/>
              <exon start="7938" stop="8092"/>
              <exon start="8329" stop="8570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8570" stop="9083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGACAAAGGGTTTTGTATCAAAGGAACCAGTCAAAGGACATATG : GTGAATGTTGTGAGAGGTCTCAAGTTATTCGAAGACGTTTTTACTCCAAATGAAATCTCTAGATTAGATGACCTTGTGAATGAACTTCGAGTTGCTGGTCAAAATGGTGAACTCTCAG : GTGAAACTTTTATTCTGTACAACCAGCAGGTGAAGGGCAGCAAAAGAGAGCTAATTCAGCTTGGTGCACCAATTTTTGAGCATGTAAAAGAGGACGCCACATGTCAAAAGA : GTCACAATGAGCCCATTCCAGCCCTTCTGCAAGGTGTCATAAACCACCTGATTCAGTGGCATCTAATATCAGAGAGTAGAAGGCCTAACAGCTGCATCATCAACTTTTTTGATGAG : GGGGAGTTTTCACAGCCTTTCCTGAAACCACCTCACTTGGAACAGCCAGTGTCCACCCTTGTCCTAGCTGACTCAATGATGGCATTTGGGCGAACACTTGTATGCGACAGTGAAGGGAACTACAAAGGCTCTCTCATGCTTTCTCTAAAAGAAGG : GTCTCTTTTGGTCATGAGGGGAAACAGTGCTGATATGGCCAGACATGCTATGTGCTCATCTCCTAACAAGAGAGTTACGATTACATTCTTCAAAGTCAGAACAGAGATGGGAACCAACTTTTCAGAAGCTGCTCCTCTGACTAGAGCCATGACCATATGGCAACCTGGTGTTCCAACACAATATGCAACTGCAAATAGAGCACACAATGGTTATGAGCCAATGGATATGGTCCCCAAATGGGGAGGTGTTGTTCGATCTCCAATGGTTATGCTGGCACCACTGCGTCCAGTAGTTATGAATCCCCGGAGGGCTCCTCGTGGTGGTACTGGTGTATTTCTTCCATGGAATGGTGGATCCAGAAAACCTGCAAAGCATCTTCCACCGCGTGCTCAAAGAGGACGGTTCCTTGCACTACCTCCCCCTGGTGACTCGCCTAAATCAGAGACCGCTTCAGAACCAAGTTTGGATCTTGATGGCAAATCACCATAGATTCTCTAGTTTGAAGTCTTTAAATACCCTTTGTAGCTGAAGGGGCTTTCTCCTACTGTGTACAATGAGTGAGCATGAATTCGCTTTCTTTTTTCTTATGGGTTTTCAAAGGTTTTCCTTCTCTTTTTATTTACGTAGAGACTAGGCGTTGGCTACTATACCTGTTCACCTATGTGATAGGCTTTAGAGATAACTGAGCTTAGGTAAATGGAGTGTATATTAGCCAAACAACAGGCTGAATTTTGTATTAAAGTTTTCGTTTTTA</gDNA_template>
            <first_frame> R  *  Q  R  V  L  Y  Q  R  N  Q  S  K  D  I  W :   *  M  L  *  E  V  S  S  Y  S  K  T  F  L  L  Q  M  K  S  L  D  *  M  T  L  *  M  N  F  E  L  L  V  K  M  V  N  S  Q  :  V  K  L  L  F  C  T  T  S  R  *  R  A  A  K  E  S  *  F  S  L  V  H  Q  F  L  S  M  *  K  R  T  P  H  V  K  R  :  V  T  M  S  P  F  Q  P  F  C  K  V  S  *  T  T  *  F  S  G  I  *  Y  Q  R  V  E  G  L  T  A  A  S  S  T  F  L  M  R :   G  S  F  H  S  L  S  *  N  H  L  T  W  N  S  Q  C  P  P  L  S  *  L  T  Q  *  W  H  L  G  E  H  L  Y  A  T  V  K  G  T  T  K  A  L  S  C  F  L  *  K  K   : G  L  F  W  S  *  G  E  T  V  L  I  W  P  D  M  L  C  A  H  L  L  T  R  E  L  R  L  H  S  S  K  S  E  Q  R  W  E  P  T  F  Q  K  L  L  L  *  L  E  P  *  P  Y  G  N  L  V  F  Q  H  N  M  Q  L  Q  I  E  H  T  M  V  M  S  Q  W  I  W  S  P  N  G  E  V  L  F  D  L  Q  W  L  C  W  H  H  C  V  Q  *  L  *  I  P  G  G  L  L  V  V  V  L  V  Y  F  F  H  G  M  V  D  P  E  N  L  Q  S  I  F  H  R  V  L  K  E  D  G  S  L  H  Y  L  P  L  V  T  R  L  N  Q  R  P  L  Q  N  Q  V  W  I  L  M  A  N  H  H  R  F  S  S  L  K  S  L  N  T  L  C  S  *  R  G  F  L  L  L  C  T  M  S  E  H  E  F  A  F  F  F  L  M  G  F  Q  R  F  S  F  S  F  Y  L  R  R  D  *  A  L  A  T  I  P  V  H  L  C  D  R  L  *  R  *  L  S  L  G  K  W  S  V  Y  *  P  N  N  R  L  N  F  V  L  K  F  S  F  L </first_frame>
            <second_frame>  D  D  K  G  F  C  I  K  G  T  S  Q  R  T  Y   : G  E  C  C  E  R  S  Q  V  I  R  R  R  F  Y  S  K  *  N  L  *  I  R  *  P  C  E  *  T  S  S  C  W  S  K  W  *  T  L  R :   *  N  F  Y  S  V  Q  P  A  G  E  G  Q  Q  K  R  A  N  S  A  W  C  T  N  F  *  A  C  K  R  G  R  H  M  S  K  E :   S  Q  *  A  H  S  S  P  S  A  R  C  H  K  P  P  D  S  V  A  S  N  I  R  E  *  K  A  *  Q  L  H  H  Q  L  F  *  *   : G  G  V  F  T  A  F  P  E  T  T  S  L  G  T  A  S  V  H  P  C  P  S  *  L  N  D  G  I  W  A  N  T  C  M  R  Q  *  R  E  L  Q  R  L  S  H  A  F  S  K  R  R  :  V  S  F  G  H  E  G  K  Q  C  *  Y  G  Q  T  C  Y  V  L  I  S  *  Q  E  S  Y  D  Y  I  L  Q  S  Q  N  R  D  G  N  Q  L  F  R  S  C  S  S  D  *  S  H  D  H  M  A  T  W  C  S  N  T  I  C  N  C  K  *  S  T  Q  W  L  *  A  N  G  Y  G  P  Q  M  G  R  C  C  S  I  S  N  G  Y  A  G  T  T  A  S  S  S  Y  E  S  P  E  G  S  S  W  W  Y  W  C  I  S  S  M  E  W  W  I  Q  K  T  C  K  A  S  S  T  A  C  S  K  R  T  V  P  C  T  T  S  P  W  *  L  A  *  I  R  D  R  F  R  T  K  F  G  S  *  W  Q  I  T  I  D  S  L  V  *  S  L  *  I  P  F  V  A  E  G  A  F  S  Y  C  V  Q  *  V  S  M  N  S  L  S  F  F  L  W  V  F  K  G  F  P  S  L  F  I  Y  V  E  T  R  R  W  L  L  Y  L  F  T  Y  V  I  G  F  R  D  N  *  A  *  V  N  G  V  Y  I  S  Q  T  T  G  *  I  L  Y  *  S  F  R  F   </second_frame>
            <third_frame>   M  T  K  G  F  V  S  K  E  P  V  K  G  H  M  :  V  N  V  V  R  G  L  K  L  F  E  D  V  F  T  P  N  E  I  S  R  L  D  D  L  V  N  E  L  R  V  A  G  Q  N  G  E  L  S   : G  E  T  F  I  L  Y  N  Q  Q  V  K  G  S  K  R  E  L  I  Q  L  G  A  P  I  F  E  H  V  K  E  D  A  T  C  Q  K   : S  H  N  E  P  I  P  A  L  L  Q  G  V  I  N  H  L  I  Q  W  H  L  I  S  E  S  R  R  P  N  S  C  I  I  N  F  F  D  E  :  G  E  F  S  Q  P  F  L  K  P  P  H  L  E  Q  P  V  S  T  L  V  L  A  D  S  M  M  A  F  G  R  T  L  V  C  D  S  E  G  N  Y  K  G  S  L  M  L  S  L  K  E  G :   S  L  L  V  M  R  G  N  S  A  D  M  A  R  H  A  M  C  S  S  P  N  K  R  V  T  I  T  F  F  K  V  R  T  E  M  G  T  N  F  S  E  A  A  P  L  T  R  A  M  T  I  W  Q  P  G  V  P  T  Q  Y  A  T  A  N  R  A  H  N  G  Y  E  P  M  D  M  V  P  K  W  G  G  V  V  R  S  P  M  V  M  L  A  P  L  R  P  V  V  M  N  P  R  R  A  P  R  G  G  T  G  V  F  L  P  W  N  G  G  S  R  K  P  A  K  H  L  P  P  R  A  Q  R  G  R  F  L  A  L  P  P  P  G  D  S  P  K  S  E  T  A  S  E  P  S  L  D  L  D  G  K  S  P  *  I  L  *  F  E  V  F  K  Y  P  L  *  L  K  G  L  S  P  T  V  Y  N  E  *  A  *  I  R  F  L  F  S  Y  G  F  S  K  V  F  L  L  F  L  F  T  *  R  L  G  V  G  Y  Y  T  C  S  P  M  *  *  A  L  E  I  T  E  L  R  *  M  E  C  I  L  A  K  Q  Q  A  E  F  C  I  K  V  F  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6814" stop="6858"/>
                    <exon start="6951" stop="7068"/>
                    <exon start="7467" stop="7577"/>
                    <exon start="7731" stop="7846"/>
                    <exon start="7938" stop="8092"/>
                    <exon start="8329" stop="8818"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTKGFVSKEPVKGHMVNVVRGLKLFEDVFTPNEISRLDDLVNELRVAGQNGELSGETFILYNQQVKGSKRELIQLGAPIFEHVKEDATCQKSHNEPIPALLQGVINHLIQWHLISESRRPNSCIINFFDEGEFSQPFLKPPHLEQPVSTLVLADSMMAFGRTLVCDSEGNYKGSLMLSLKEGSLLVMRGNSADMARHAMCSSPNKRVTITFFKVRTEMGTNFSEAAPLTRAMTIWQPGVPTQYATANRAHNGYEPMDMVPKWGGVVRSPMVMLAPLRPVVMNPRRAPRGGTGVFLPWNGGSRKPAKHLPPRAQRGRFLALPPPGDSPKSETASEPSLDLDGKSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6839" e_stop="6858"/>
            <exon e_start="6951" e_stop="7500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6839" e_stop="6858" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6859" i_stop="6950" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6951" e_stop="7500" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6839" stop="6858"/>
              <exon start="6951" stop="7500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCAGTCAAAGGACATATG : GTGAATGTTGTGAGAGGTCTCAAGTTATTCGAAGACGTTTTTACTCCAAATGAAATCTCTAGATTAGATGACCTTGTGAATGAACTTCGAGTTGCTGGTCAAAATGGTGAACTCTCAGGTGGATCCTGTGATTCGTGACGCTTTTATAGTTATTGTTGTTTCCTTTTTGGGGCGAAGTTATGAGATAGTAAAAGGACACCTTCTGTAGGTTTGCTGGAGCAGGTTTGAGCATTTGTTTATTCTTTATGACTAATTGCAGCTGCCTTAAAATCATTGTTTGTGACTTGGTGCTTGAGGTTGATACCTAACTTTGTTTTCACTTAAACTTCTCTTTTGCTTATAATCTGATGAATCAAACAAGCACCAAAAAACATCAACTAAAATTAAACTTTCTTCTACTTTTTTGGTAGCCTTGTCAAGTTTTGCGATACCAGCAATGCCAATTCTGATGAACTATTTACTTCTCCAATATGTGATCTTGGATAAGTTCCTGATTGATCTGTGACTCTGTTTCAGGTGAAACTTTTATTCTGTACAACCAGCAGGTGAA</gDNA_template>
            <first_frame> N  Q  S  K  D  I  W :   *  M  L  *  E  V  S  S  Y  S  K  T  F  L  L  Q  M  K  S  L  D  *  M  T  L  *  M  N  F  E  L  L  V  K  M  V  N  S  Q  V  D  P  V  I  R  D  A  F  I  V  I  V  V  S  F  L  G  R  S  Y  E  I  V  K  G  H  L  L  *  V  C  W  S  R  F  E  H  L  F  I  L  Y  D  *  L  Q  L  P  *  N  H  C  L  *  L  G  A  *  G  *  Y  L  T  L  F  S  L  K  L  L  F  C  L  *  S  D  E  S  N  K  H  Q  K  T  S  T  K  I  K  L  S  S  T  F  L  V  A  L  S  S  F  A  I  P  A  M  P  I  L  M  N  Y  L  L  L  Q  Y  V  I  L  D  K  F  L  I  D  L  *  L  C  F  R  *  N  F  Y  S  V  Q  P  A  G  E </first_frame>
            <second_frame>  T  S  Q  R  T  Y   : G  E  C  C  E  R  S  Q  V  I  R  R  R  F  Y  S  K  *  N  L  *  I  R  *  P  C  E  *  T  S  S  C  W  S  K  W  *  T  L  R  W  I  L  *  F  V  T  L  L  *  L  L  L  F  P  F  W  G  E  V  M  R  *  *  K  D  T  F  C  R  F  A  G  A  G  L  S  I  C  L  F  F  M  T  N  C  S  C  L  K  I  I  V  C  D  L  V  L  E  V  D  T  *  L  C  F  H  L  N  F  S  F  A  Y  N  L  M  N  Q  T  S  T  K  K  H  Q  L  K  L  N  F  L  L  L  F  W  *  P  C  Q  V  L  R  Y  Q  Q  C  Q  F  *  *  T  I  Y  F  S  N  M  *  S  W  I  S  S  *  L  I  C  D  S  V  S  G  E  T  F  I  L  Y  N  Q  Q  V   </second_frame>
            <third_frame>   P  V  K  G  H  M  :  V  N  V  V  R  G  L  K  L  F  E  D  V  F  T  P  N  E  I  S  R  L  D  D  L  V  N  E  L  R  V  A  G  Q  N  G  E  L  S  G  G  S  C  D  S  *  R  F  Y  S  Y  C  C  F  L  F  G  A  K  L  *  D  S  K  R  T  P  S  V  G  L  L  E  Q  V  *  A  F  V  Y  S  L  *  L  I  A  A  A  L  K  S  L  F  V  T  W  C  L  R  L  I  P  N  F  V  F  T  *  T  S  L  L  L  I  I  *  *  I  K  Q  A  P  K  N  I  N  *  N  *  T  F  F  Y  F  F  G  S  L  V  K  F  C  D  T  S  N  A  N  S  D  E  L  F  T  S  P  I  C  D  L  G  *  V  P  D  *  S  V  T  L  F  Q  V  K  L  L  F  C  T  T  S  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLf0041H22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12404" PGL_stop="10454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12404" e_stop="10454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="12404" e_stop="10454" e_length="1951"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12404" stop="10454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCTTTCTCTGAGAGTGGGAACTGCCAACTGGCAACAACATCCTCTTCAAAGGTGACACTTTGACAGAACACTCAAATCAATTCTTGATTCCACTGCGCCATGGATTTCTTCAAATCCATCTTATCAGATGATCCCGAACCGGACCCTCCACTACCCAAAAAGCCCCATGATTCTTCACCGGAAAAGGAAATTGTACCGGATCAGAATCTTGAAAAACCCAATTCACGATCTGATTCAAACGCCGCCGACGGCGCTGATGGTCCTGATGCTGGTGTTTGGAGTTTCGGAGGTTTGTTGAAGACATTATCAACCCGATCCGAATCAGTGCTCGAGACATACCGTCGGGATCTACAGGAATTCGGATCCGGGTTGAAGAAAGAAACCGAATTGTTCCGTGAAGTAGCTAGTCGAGCTGTTAAGGATCTTCCTAACTCGATCGAGGTCGGAACTACCGTCAGCCACGCCATTGACGGTGTTATCAAATCGACAACTGAGATTATATCACAAGGTAAAGATACTCTTCTCGCTTCCTCTGATGCTGAATCCGAAACCCCAGATGCGAATCAGACCTTGAATTCGGGTCGGTACAGTCGGTTTGAATCTCAATTGATGAATATCCAGAGTGACCCGAATACGTTCTGTGTGGATCCTGAGGATTTGGAGGAGTACAAGAAGTGGAAATCTGAGTTTGATTTGAAGGAAAATAGTAAGGAAGTTGAGATTTTGATTGAAGAAAATGGATCTTTGGAAGGTATATTCAAAAGGGTTGTGCCTAATGAAGTTGATAATGAGACTTTTTGGTGTCGATATTTTTATAAAGTGTATAAGCTTAAGCAACAAGAGAGTGTAAGAGCTAATCTTGTGAAGAGAGCAATATCTATAGATGATGAAGAAGAATTGTCTTGGGATGTCGATGATGATGACGACAATAATGAACAAGAGAACATTGCCAAATCGAAATTCGATGAGAAGGGAAAAGAGGGTTCTGTTGTTGAAAGCTCTGTCAATGATGTAAAGAAAGAATCTGCCACTCAAGATTCAACAAACGTTGCAAAGGAAGTGCCTGCTAATAAGAGTGAGCCAAGCAAGCAGGATTCGACCAACATTGCAAAGGAAGTGCCTACTAATAAAAGTGAACCAATCACGCAGGATTCAACCAACGTTGCGAAGGAAGTGCCTACTAATAAAAGTGAACCAAACAAGCAGGATTCGACCAACGCTGTAAAACAGGACGAATCACAAACTATAAGTTCGGCTTCTGTTGATAGGAAAGAAGAGAGTCAGCCTAATGTAGATGGTGGTGGCAAGAGTAAGGTCGTAGAATCAGTTGGGAGTAACAAAGATAGTAAGAAAGAAGACGCTGAAGTTACTCCTCTGGTTAAAAAGGAGGAAGAGGTAGTAAAAGGTTCAGAGGGGAAAAGTGATAAGGATGGATCAGGCAAAGATGGTGATGTCCCTATTGCTTCAAGTCAAAAGACGACTGGGGCCGATGAGGACGACTTGGATTGGGATGAGATTGAGGACGTTGACGGTATTGATGACAAAAAGGCAACTTCTCATGTTGCAAGCACCAATAGAGATGATTTGAGGAAGAGGCTTAGTGTTGAAGAGGACGATGAGGATTTGAGTTGGGATTGAAGATGATGACAACCCTGTGAAAGCTTTTTGATCGTCATTCAAAATATGCAGAAAGCTGGATGTCAATGCTGTCAACGTACAACAGAACTCAAGAATTAAACTTTAAAGCTTGAAACCTAGTAAAGTAAGATAACGTTTATTGTCTCAGGCAGTTTGTTTAATTGTGCTTCATGATTTTCATTCTTTTCATTTTACTTTTAGCTTAGTAGTCGCGATTTCCATGTCTAGCTGTTCATTTATAATGTGAACATGTTTTGTGCCCTTTGTATACTTGGGAAATTTGAATGAAAGCAATGATGTTCATAGACAAA</gDNA_template>
            <first_frame> S  L  S  L  R  V  G  T  A  N  W  Q  Q  H  P  L  Q  R  *  H  F  D  R  T  L  K  S  I  L  D  S  T  A  P  W  I  S  S  N  P  S  Y  Q  M  I  P  N  R  T  L  H  Y  P  K  S  P  M  I  L  H  R  K  R  K  L  Y  R  I  R  I  L  K  N  P  I  H  D  L  I  Q  T  P  P  T  A  L  M  V  L  M  L  V  F  G  V  S  E  V  C  *  R  H  Y  Q  P  D  P  N  Q  C  S  R  H  T  V  G  I  Y  R  N  S  D  P  G  *  R  K  K  P  N  C  S  V  K  *  L  V  E  L  L  R  I  F  L  T  R  S  R  S  E  L  P  S  A  T  P  L  T  V  L  S  N  R  Q  L  R  L  Y  H  K  V  K  I  L  F  S  L  P  L  M  L  N  P  K  P  Q  M  R  I  R  P  *  I  R  V  G  T  V  G  L  N  L  N  *  *  I  S  R  V  T  R  I  R  S  V  W  I  L  R  I  W  R  S  T  R  S  G  N  L  S  L  I  *  R  K  I  V  R  K  L  R  F  *  L  K  K  M  D  L  W  K  V  Y  S  K  G  L  C  L  M  K  L  I  M  R  L  F  G  V  D  I  F  I  K  C  I  S  L  S  N  K  R  V  *  E  L  I  L  *  R  E  Q  Y  L  *  M  M  K  K  N  C  L  G  M  S  M  M  M  T  T  I  M  N  K  R  T  L  P  N  R  N  S  M  R  R  E  K  R  V  L  L  L  K  A  L  S  M  M  *  R  K  N  L  P  L  K  I  Q  Q  T  L  Q  R  K  C  L  L  I  R  V  S  Q  A  S  R  I  R  P  T  L  Q  R  K  C  L  L  I  K  V  N  Q  S  R  R  I  Q  P  T  L  R  R  K  C  L  L  I  K  V  N  Q  T  S  R  I  R  P  T  L  *  N  R  T  N  H  K  L  *  V  R  L  L  L  I  G  K  K  R  V  S  L  M  *  M  V  V  A  R  V  R  S  *  N  Q  L  G  V  T  K  I  V  R  K  K  T  L  K  L  L  L  W  L  K  R  R  K  R  *  *  K  V  Q  R  G  K  V  I  R  M  D  Q  A  K  M  V  M  S  L  L  L  Q  V  K  R  R  L  G  P  M  R  T  T  W  I  G  M  R  L  R  T  L  T  V  L  M  T  K  R  Q  L  L  M  L  Q  A  P  I  E  M  I  *  G  R  G  L  V  L  K  R  T  M  R  I  *  V  G  I  E  D  D  D  N  P  V  K  A  F  *  S  S  F  K  I  C  R  K  L  D  V  N  A  V  N  V  Q  Q  N  S  R  I  K  L  *  S  L  K  P  S  K  V  R  *  R  L  L  S  Q  A  V  C  L  I  V  L  H  D  F  H  S  F  H  F  T  F  S  L  V  V  A  I  S  M  S  S  C  S  F  I  M  *  T  C  F  V  P  F  V  Y  L  G  N  L  N  E  S  N  D  V  H  R  Q  </first_frame>
            <second_frame>  V  F  L  *  E  W  E  L  P  T  G  N  N  I  L  F  K  G  D  T  L  T  E  H  S  N  Q  F  L  I  P  L  R  H  G  F  L  Q  I  H  L  I  R  *  S  R  T  G  P  S  T  T  Q  K  A  P  *  F  F  T  G  K  G  N  C  T  G  S  E  S  *  K  T  Q  F  T  I  *  F  K  R  R  R  R  R  *  W  S  *  C  W  C  L  E  F  R  R  F  V  E  D  I  I  N  P  I  R  I  S  A  R  D  I  P  S  G  S  T  G  I  R  I  R  V  E  E  R  N  R  I  V  P  *  S  S  *  S  S  C  *  G  S  S  *  L  D  R  G  R  N  Y  R  Q  P  R  H  *  R  C  Y  Q  I  D  N  *  D  Y  I  T  R  *  R  Y  S  S  R  F  L  *  C  *  I  R  N  P  R  C  E  S  D  L  E  F  G  S  V  Q  S  V  *  I  S  I  D  E  Y  P  E  *  P  E  Y  V  L  C  G  S  *  G  F  G  G  V  Q  E  V  E  I  *  V  *  F  E  G  K  *  *  G  S  *  D  F  D  *  R  K  W  I  F  G  R  Y  I  Q  K  G  C  A  *  *  S  *  *  *  D  F  L  V  S  I  F  L  *  S  V  *  A  *  A  T  R  E  C  K  S  *  S  C  E  E  S  N  I  Y  R  *  *  R  R  I  V  L  G  C  R  *  *  *  R  Q  *  *  T  R  E  H  C  Q  I  E  I  R  *  E  G  K  R  G  F  C  C  *  K  L  C  Q  *  C  K  E  R  I  C  H  S  R  F  N  K  R  C  K  G  S  A  C  *  *  E  *  A  K  Q  A  G  F  D  Q  H  C  K  G  S  A  Y  *  *  K  *  T  N  H  A  G  F  N  Q  R  C  E  G  S  A  Y  *  *  K  *  T  K  Q  A  G  F  D  Q  R  C  K  T  G  R  I  T  N  Y  K  F  G  F  C  *  *  E  R  R  E  S  A  *  C  R  W  W  W  Q  E  *  G  R  R  I  S  W  E  *  Q  R  *  *  E  R  R  R  *  S  Y  S  S  G  *  K  G  G  R  G  S  K  R  F  R  G  E  K  *  *  G  W  I  R  Q  R  W  *  C  P  Y  C  F  K  S  K  D  D  W  G  R  *  G  R  L  G  L  G  *  D  *  G  R  *  R  Y  *  *  Q  K  G  N  F  S  C  C  K  H  Q  *  R  *  F  E  E  E  A  *  C  *  R  G  R  *  G  F  E  L  G  L  K  M  M  T  T  L  *  K  L  F  D  R  H  S  K  Y  A  E  S  W  M  S  M  L  S  T  Y  N  R  T  Q  E  L  N  F  K  A  *  N  L  V  K  *  D  N  V  Y  C  L  R  Q  F  V  *  L  C  F  M  I  F  I  L  F  I  L  L  L  A  *  *  S  R  F  P  C  L  A  V  H  L  *  C  E  H  V  L  C  P  L  Y  T  W  E  I  *  M  K  A  M  M  F  I  D  K </second_frame>
            <third_frame>   S  F  S  E  S  G  N  C  Q  L  A  T  T  S  S  S  K  V  T  L  *  Q  N  T  Q  I  N  S  *  F  H  C  A  M  D  F  F  K  S  I  L  S  D  D  P  E  P  D  P  P  L  P  K  K  P  H  D  S  S  P  E  K  E  I  V  P  D  Q  N  L  E  K  P  N  S  R  S  D  S  N  A  A  D  G  A  D  G  P  D  A  G  V  W  S  F  G  G  L  L  K  T  L  S  T  R  S  E  S  V  L  E  T  Y  R  R  D  L  Q  E  F  G  S  G  L  K  K  E  T  E  L  F  R  E  V  A  S  R  A  V  K  D  L  P  N  S  I  E  V  G  T  T  V  S  H  A  I  D  G  V  I  K  S  T  T  E  I  I  S  Q  G  K  D  T  L  L  A  S  S  D  A  E  S  E  T  P  D  A  N  Q  T  L  N  S  G  R  Y  S  R  F  E  S  Q  L  M  N  I  Q  S  D  P  N  T  F  C  V  D  P  E  D  L  E  E  Y  K  K  W  K  S  E  F  D  L  K  E  N  S  K  E  V  E  I  L  I  E  E  N  G  S  L  E  G  I  F  K  R  V  V  P  N  E  V  D  N  E  T  F  W  C  R  Y  F  Y  K  V  Y  K  L  K  Q  Q  E  S  V  R  A  N  L  V  K  R  A  I  S  I  D  D  E  E  E  L  S  W  D  V  D  D  D  D  D  N  N  E  Q  E  N  I  A  K  S  K  F  D  E  K  G  K  E  G  S  V  V  E  S  S  V  N  D  V  K  K  E  S  A  T  Q  D  S  T  N  V  A  K  E  V  P  A  N  K  S  E  P  S  K  Q  D  S  T  N  I  A  K  E  V  P  T  N  K  S  E  P  I  T  Q  D  S  T  N  V  A  K  E  V  P  T  N  K  S  E  P  N  K  Q  D  S  T  N  A  V  K  Q  D  E  S  Q  T  I  S  S  A  S  V  D  R  K  E  E  S  Q  P  N  V  D  G  G  G  K  S  K  V  V  E  S  V  G  S  N  K  D  S  K  K  E  D  A  E  V  T  P  L  V  K  K  E  E  E  V  V  K  G  S  E  G  K  S  D  K  D  G  S  G  K  D  G  D  V  P  I  A  S  S  Q  K  T  T  G  A  D  E  D  D  L  D  W  D  E  I  E  D  V  D  G  I  D  D  K  K  A  T  S  H  V  A  S  T  N  R  D  D  L  R  K  R  L  S  V  E  E  D  D  E  D  L  S  W  D  *  R  *  *  Q  P  C  E  S  F  L  I  V  I  Q  N  M  Q  K  A  G  C  Q  C  C  Q  R  T  T  E  L  K  N  *  T  L  K  L  E  T  *  *  S  K  I  T  F  I  V  S  G  S  L  F  N  C  A  S  *  F  S  F  F  S  F  Y  F  *  L  S  S  R  D  F  H  V  *  L  F  I  Y  N  V  N  M  F  C  A  L  C  I  L  G  K  F  E  *  K  Q  *  C  S  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12315" stop="10765"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1548</number_coding_nucleotides>
                  <number_encoded_amino_acids>516</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHCAMDFFKSILSDDPEPDPPLPKKPHDSSPEKEIVPDQNLEKPNSRSDSNAADGADGPDAGVWSFGGLLKTLSTRSESVLETYRRDLQEFGSGLKKETELFREVASRAVKDLPNSIEVGTTVSHAIDGVIKSTTEIISQGKDTLLASSDAESETPDANQTLNSGRYSRFESQLMNIQSDPNTFCVDPEDLEEYKKWKSEFDLKENSKEVEILIEENGSLEGIFKRVVPNEVDNETFWCRYFYKVYKLKQQESVRANLVKRAISIDDEEELSWDVDDDDDNNEQENIAKSKFDEKGKEGSVVESSVNDVKKESATQDSTNVAKEVPANKSEPSKQDSTNIAKEVPTNKSEPITQDSTNVAKEVPTNKSEPNKQDSTNAVKQDESQTISSASVDRKEESQPNVDGGGKSKVVESVGSNKDSKKEDAEVTPLVKKEEEVVKGSEGKSDKDGSGKDGDVPIASSQKTTGADEDDLDWDEIEDVDGIDDKKATSHVASTNRDDLRKRLSVEEDDEDLSWD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="16898" PGL_stop="16132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16898" e_stop="16132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="16898" e_stop="16132" e_length="767"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16898" stop="16132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGACATTAATATTATTACTATATCAAATGCAAAGAGCTGGATGGCCTTTTGGAGCCTTTCTTCTTCTCTTCCTCTCCTTGGCCTCCTGTCTCTCTTGCTTTCCCATCAAACCTCCTTGATCACATCCACTAACAGCGACAACGTTCACATTCATCAGGTGTCAGATGGGCGGGTTGGGTCAAACTCTTCTGTATTCCGTGAGGCCCCTGCATTTCGCAATGGGGACACTTGTGGTAATAATGATAGAATGCATGTGGCTATGACACTTGATGCTAATTATTTAAGAGGTACTATGGCTGCAGTGTTATCGATATTACAACATTCAACGTGCCCTGAAGACGTTACCTTTCATTTCCTATGGGTTAGACATGAACATGAGGTGTTTTCGAGTATTAAGGCAACGTTTCCTTACCTTAATTTCAAGGTGTATCGATTTGATGTACATAGGGTACGTGGCCTAATATCTAAGTCTATACGTCAAGCTTTAGATCAACCGTTGAATTATGCCAGGATTTATTTGGCTAATTTAATACCTAATGAGGTGAAACGCGTTATTTATCTTGATTCTGACCTTGTCATGGTTGATGACATCGCAAAGTTATGGAAGGTTGAATTAGGTGACAAGGTTTTGGCTGCACCTGAATATTGTCAAGCAAATTTCACCGTTTATTTTACTGAAGCGTTTTGGTCTGATCCTTATATGCCAAGAACATTTGAAGGGCGAAAACCGTGTTATTTCAACACGGGGGTGTTGGTAATGGATGTT</gDNA_template>
            <first_frame> L  T  L  I  L  L  L  Y  Q  M  Q  R  A  G  W  P  F  G  A  F  L  L  L  F  L  S  L  A  S  C  L  S  C  F  P  I  K  P  P  *  S  H  P  L  T  A  T  T  F  T  F  I  R  C  Q  M  G  G  L  G  Q  T  L  L  Y  S  V  R  P  L  H  F  A  M  G  T  L  V  V  I  M  I  E  C  M  W  L  *  H  L  M  L  I  I  *  E  V  L  W  L  Q  C  Y  R  Y  Y  N  I  Q  R  A  L  K  T  L  P  F  I  S  Y  G  L  D  M  N  M  R  C  F  R  V  L  R  Q  R  F  L  T  L  I  S  R  C  I  D  L  M  Y  I  G  Y  V  A  *  Y  L  S  L  Y  V  K  L  *  I  N  R  *  I  M  P  G  F  I  W  L  I  *  Y  L  M  R  *  N  A  L  F  I  L  I  L  T  L  S  W  L  M  T  S  Q  S  Y  G  R  L  N  *  V  T  R  F  W  L  H  L  N  I  V  K  Q  I  S  P  F  I  L  L  K  R  F  G  L  I  L  I  C  Q  E  H  L  K  G  E  N  R  V  I  S  T  R  G  C  W  *  W  M   </first_frame>
            <second_frame>  *  H  *  Y  Y  Y  Y  I  K  C  K  E  L  D  G  L  L  E  P  F  F  F  S  S  S  P  W  P  P  V  S  L  A  F  P  S  N  L  L  D  H  I  H  *  Q  R  Q  R  S  H  S  S  G  V  R  W  A  G  W  V  K  L  F  C  I  P  *  G  P  C  I  S  Q  W  G  H  L  W  *  *  *  *  N  A  C  G  Y  D  T  *  C  *  L  F  K  R  Y  Y  G  C  S  V  I  D  I  T  T  F  N  V  P  *  R  R  Y  L  S  F  P  M  G  *  T  *  T  *  G  V  F  E  Y  *  G  N  V  S  L  P  *  F  Q  G  V  S  I  *  C  T  *  G  T  W  P  N  I  *  V  Y  T  S  S  F  R  S  T  V  E  L  C  Q  D  L  F  G  *  F  N  T  *  *  G  E  T  R  Y  L  S  *  F  *  P  C  H  G  *  *  H  R  K  V  M  E  G  *  I  R  *  Q  G  F  G  C  T  *  I  L  S  S  K  F  H  R  L  F  Y  *  S  V  L  V  *  S  L  Y  A  K  N  I  *  R  A  K  T  V  L  F  Q  H  G  G  V  G  N  G  C  </second_frame>
            <third_frame>   D  I  N  I  I  T  I  S  N  A  K  S  W  M  A  F  W  S  L  S  S  S  L  P  L  L  G  L  L  S  L  L  L  S  H  Q  T  S  L  I  T  S  T  N  S  D  N  V  H  I  H  Q  V  S  D  G  R  V  G  S  N  S  S  V  F  R  E  A  P  A  F  R  N  G  D  T  C  G  N  N  D  R  M  H  V  A  M  T  L  D  A  N  Y  L  R  G  T  M  A  A  V  L  S  I  L  Q  H  S  T  C  P  E  D  V  T  F  H  F  L  W  V  R  H  E  H  E  V  F  S  S  I  K  A  T  F  P  Y  L  N  F  K  V  Y  R  F  D  V  H  R  V  R  G  L  I  S  K  S  I  R  Q  A  L  D  Q  P  L  N  Y  A  R  I  Y  L  A  N  L  I  P  N  E  V  K  R  V  I  Y  L  D  S  D  L  V  M  V  D  D  I  A  K  L  W  K  V  E  L  G  D  K  V  L  A  A  P  E  Y  C  Q  A  N  F  T  V  Y  F  T  E  A  F  W  S  D  P  Y  M  P  R  T  F  E  G  R  K  P  C  Y  F  N  T  G  V  L  V  M  D  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16896" stop="16132"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DINIITISNAKSWMAFWSLSSSLPLLGLLSLLLSHQTSLITSTNSDNVHIHQVSDGRVGSNSSVFREAPAFRNGDTCGNNDRMHVAMTLDANYLRGTMAAVLSILQHSTCPEDVTFHFLWVRHEHEVFSSIKATFPYLNFKVYRFDVHRVRGLISKSIRQALDQPLNYARIYLANLIPNEVKRVIYLDSDLVMVDDIAKLWKVELGDKVLAAPEYCQANFTVYFTEAFWSDPYMPRTFEGRKPCYFNTGVLVMDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="22004" PGL_stop="26755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22004" e_stop="22254"/>
            <exon e_start="22391" e_stop="22492"/>
            <exon e_start="22570" e_stop="22615"/>
            <exon e_start="23367" e_stop="23456"/>
            <exon e_start="24485" e_stop="24550"/>
            <exon e_start="24746" e_stop="24814"/>
            <exon e_start="26054" e_stop="26755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.996"/>
          <exon-intron don_prob="0.438" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.345" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="22004" e_stop="22254" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22255" i_stop="22390" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22391" e_stop="22492" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.438" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22493" i_stop="22569" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22570" e_stop="22615" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22616" i_stop="23366" i_length="751"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23367" e_stop="23456" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.992">
            <gDNA_intron_boundary i_start="23457" i_stop="24484" i_length="1028"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24485" e_stop="24550" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.345" acc_prob="0.986">
            <gDNA_intron_boundary i_start="24551" i_stop="24745" i_length="195"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24746" e_stop="24814" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.991">
            <gDNA_intron_boundary i_start="24815" i_stop="26053" i_length="1239"/>
          </intron>
          <exon e_serial="7" e_score="0.999">
            <gDNA_exon_boundary e_start="26054" e_stop="26755" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22004" stop="22254"/>
              <exon start="22391" stop="22492"/>
              <exon start="22570" stop="22615"/>
              <exon start="23367" stop="23456"/>
              <exon start="24485" stop="24550"/>
              <exon start="24746" stop="24814"/>
              <exon start="26054" stop="26755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332050" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGTACAAGCTTGGCAAACAGGGTTTAAGAGAGGTTTTAGGGTTTCTTCTGCACTAGTTCTTCTTCTTCTTCCTTTTGTTCACAAAATCAGAAAAAAATGAGAGGAATACAGTTATCTTTCAGCAACACCCAAAAGCTAAGATTAGAAAAAGCATTAGCGCAATTGGAATCCTTTTCTTCGAAGCTTAATTCCAATGCCACTGTCATTGTTGCAGACAAAATTCCAGTCGACGAAGATGCTGCCCTCAA : AGGACATGGGACGTTGGAGATGGGCAATGATGTTGTTGCAAGTGTATGTGGAGTGGTTGAGCGGGTGAATAAGCTTGTTTATGTTAGACCTTTAAGGGCCAG : GTATAAGCCGGAGATTGGTGATATTATAGTCGGCCGCGTTATTGAG : GTTGCTCCAAAGAGATGGAGGTTGGAAATTAATTTCAGCCAAGACGCTGTACTAATGCTCTCTTCTATGAATCTTCCAGATGGCATTCAG : AGGCGGCGAACAGCAGTTGATGAACTCAATATGCGAAGCATATTTGTGGAGAATGATGTCATCTGT : GCTGAAGTCCGTGGTTTCCAACATGATGGGAGTCTACACCTCCAAGCTAGAAGCCAAAAGTATGGAAAG : CTTGAAAGAGGGAAACTACTCAAAATCCCTCCATATCTAGTGAAAAGGCGTAAACAGCATTTCCACCATCTAGATCAGTATGGAGTTGACTTGATTTTTGGCTGCAATGGATTAATTTGGGTTGGGGAACACATTGATGTAAAAGATGTAATGGTGGAGGATCAAGTAAATAAGTCCGATCCACAGAACACCCATTCATCAAGCTTACCAGGTTCTAGTGAAGAACCAACTGATACACCACTGGAAATAAGACAATATATATGCAGGATAGCAAATGCCATCACTGTATTCTCAGCTTTAGGCTTCATGGTTAATTTGGACTCCATAATGGAGACAGTTACCTTGAGCTTATCTTTAAACCTTGGTGTACATGAGATGCTTGAAGCAGAATTCCATGTTCGAGTTGCTGAGCAAGAAGCTGAACGACGGAGCACATCAAAAAGGAGGAGATAGTTTACAACTCATCATCTACATTTGCCTTTCTTGGATTGTCGATTATGCAAAAGATAGAAGAGATTAGGAATCTATTAAGCTGAATCGGGTAGCGCTATGTCACCCTTTAATTGAAAAAGATCTGTAAAAGAGTTTCCTTCTGAATATCCCCTTAAATTCACACTTTTGATTTATGTGCATTAGTAAGGAGTGTGCAGCTGAAGATCAAAGTTTTTCTTCCCAGCAATGAAAATTTTTCTTATGTTTTCA</gDNA_template>
            <first_frame> H  C  T  S  L  A  N  R  V  *  E  R  F  *  G  F  F  C  T  S  S  S  S  S  S  F  C  S  Q  N  Q  K  K  M  R  G  I  Q  L  S  F  S  N  T  Q  K  L  R  L  E  K  A  L  A  Q  L  E  S  F  S  S  K  L  N  S  N  A  T  V  I  V  A  D  K  I  P  V  D  E  D  A  A  L  K :   G  H  G  T  L  E  M  G  N  D  V  V  A  S  V  C  G  V  V  E  R  V  N  K  L  V  Y  V  R  P  L  R  A  R :   Y  K  P  E  I  G  D  I  I  V  G  R  V  I  E  :  V  A  P  K  R  W  R  L  E  I  N  F  S  Q  D  A  V  L  M  L  S  S  M  N  L  P  D  G  I  Q  :  R  R  R  T  A  V  D  E  L  N  M  R  S  I  F  V  E  N  D  V  I  C  :  A  E  V  R  G  F  Q  H  D  G  S  L  H  L  Q  A  R  S  Q  K  Y  G  K  :  L  E  R  G  K  L  L  K  I  P  P  Y  L  V  K  R  R  K  Q  H  F  H  H  L  D  Q  Y  G  V  D  L  I  F  G  C  N  G  L  I  W  V  G  E  H  I  D  V  K  D  V  M  V  E  D  Q  V  N  K  S  D  P  Q  N  T  H  S  S  S  L  P  G  S  S  E  E  P  T  D  T  P  L  E  I  R  Q  Y  I  C  R  I  A  N  A  I  T  V  F  S  A  L  G  F  M  V  N  L  D  S  I  M  E  T  V  T  L  S  L  S  L  N  L  G  V  H  E  M  L  E  A  E  F  H  V  R  V  A  E  Q  E  A  E  R  R  S  T  S  K  R  R  R  *  F  T  T  H  H  L  H  L  P  F  L  D  C  R  L  C  K  R  *  K  R  L  G  I  Y  *  A  E  S  G  S  A  M  S  P  F  N  *  K  R  S  V  K  E  F  P  S  E  Y  P  L  K  F  T  L  L  I  Y  V  H  *  *  G  V  C  S  *  R  S  K  F  F  F  P  A  M  K  I  F  L  M  F  S </first_frame>
            <second_frame>  I  V  Q  A  W  Q  T  G  F  K  R  G  F  R  V  S  S  A  L  V  L  L  L  L  P  F  V  H  K  I  R  K  K  *  E  E  Y  S  Y  L  S  A  T  P  K  S  *  D  *  K  K  H  *  R  N  W  N  P  F  L  R  S  L  I  P  M  P  L  S  L  L  Q  T  K  F  Q  S  T  K  M  L  P  S   : K  D  M  G  R  W  R  W  A  M  M  L  L  Q  V  Y  V  E  W  L  S  G  *  I  S  L  F  M  L  D  L  *  G  P   : G  I  S  R  R  L  V  I  L  *  S  A  A  L  L  R :   L  L  Q  R  D  G  G  W  K  L  I  S  A  K  T  L  Y  *  C  S  L  L  *  I  F  Q  M  A  F  R :   G  G  E  Q  Q  L  M  N  S  I  C  E  A  Y  L  W  R  M  M  S  S  V :   L  K  S  V  V  S  N  M  M  G  V  Y  T  S  K  L  E  A  K  S  M  E  S :   L  K  E  G  N  Y  S  K  S  L  H  I  *  *  K  G  V  N  S  I  S  T  I  *  I  S  M  E  L  T  *  F  L  A  A  M  D  *  F  G  L  G  N  T  L  M  *  K  M  *  W  W  R  I  K  *  I  S  P  I  H  R  T  P  I  H  Q  A  Y  Q  V  L  V  K  N  Q  L  I  H  H  W  K  *  D  N  I  Y  A  G  *  Q  M  P  S  L  Y  S  Q  L  *  A  S  W  L  I  W  T  P  *  W  R  Q  L  P  *  A  Y  L  *  T  L  V  Y  M  R  C  L  K  Q  N  S  M  F  E  L  L  S  K  K  L  N  D  G  A  H  Q  K  G  G  D  S  L  Q  L  I  I  Y  I  C  L  S  W  I  V  D  Y  A  K  D  R  R  D  *  E  S  I  K  L  N  R  V  A  L  C  H  P  L  I  E  K  D  L  *  K  S  F  L  L  N  I  P  L  N  S  H  F  *  F  M  C  I  S  K  E  C  A  A  E  D  Q  S  F  S  S  Q  Q  *  K  F  F  L  C  F   </second_frame>
            <third_frame>   L  Y  K  L  G  K  Q  G  L  R  E  V  L  G  F  L  L  H  *  F  F  F  F  F  L  L  F  T  K  S  E  K  N  E  R  N  T  V  I  F  Q  Q  H  P  K  A  K  I  R  K  S  I  S  A  I  G  I  L  F  F  E  A  *  F  Q  C  H  C  H  C  C  R  Q  N  S  S  R  R  R  C  C  P  Q  :  R  T  W  D  V  G  D  G  Q  *  C  C  C  K  C  M  W  S  G  *  A  G  E  *  A  C  L  C  *  T  F  K  G  Q  :  V  *  A  G  D  W  *  Y  Y  S  R  P  R  Y  *   : G  C  S  K  E  M  E  V  G  N  *  F  Q  P  R  R  C  T  N  A  L  F  Y  E  S  S  R  W  H  S   : E  A  A  N  S  S  *  *  T  Q  Y  A  K  H  I  C  G  E  *  C  H  L   : C  *  S  P  W  F  P  T  *  W  E  S  T  P  P  S  *  K  P  K  V  W  K   : A  *  K  R  E  T  T  Q  N  P  S  I  S  S  E  K  A  *  T  A  F  P  P  S  R  S  V  W  S  *  L  D  F  W  L  Q  W  I  N  L  G  W  G  T  H  *  C  K  R  C  N  G  G  G  S  S  K  *  V  R  S  T  E  H  P  F  I  K  L  T  R  F  *  *  R  T  N  *  Y  T  T  G  N  K  T  I  Y  M  Q  D  S  K  C  H  H  C  I  L  S  F  R  L  H  G  *  F  G  L  H  N  G  D  S  Y  L  E  L  I  F  K  P  W  C  T  *  D  A  *  S  R  I  P  C  S  S  C  *  A  R  S  *  T  T  E  H  I  K  K  E  E  I  V  Y  N  S  S  S  T  F  A  F  L  G  L  S  I  M  Q  K  I  E  E  I  R  N  L  L  S  *  I  G  *  R  Y  V  T  L  *  L  K  K  I  C  K  R  V  S  F  *  I  S  P  *  I  H  T  F  D  L  C  A  L  V  R  S  V  Q  L  K  I  K  V  F  L  P  S  N  E  N  F  S  Y  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22046" stop="22254"/>
                    <exon start="22391" stop="22492"/>
                    <exon start="22570" stop="22615"/>
                    <exon start="23367" stop="23456"/>
                    <exon start="24485" stop="24550"/>
                    <exon start="24746" stop="24814"/>
                    <exon start="26054" stop="26506"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFFCTSSSSSSFCSQNQKKMRGIQLSFSNTQKLRLEKALAQLESFSSKLNSNATVIVADKIPVDEDAALKGHGTLEMGNDVVASVCGVVERVNKLVYVRPLRARYKPEIGDIIVGRVIEVAPKRWRLEINFSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFVENDVICAEVRGFQHDGSLHLQARSQKYGKLERGKLLKIPPYLVKRRKQHFHHLDQYGVDLIFGCNGLIWVGEHIDVKDVMVEDQVNKSDPQNTHSSSLPGSSEEPTDTPLEIRQYICRIANAITVFSALGFMVNLDSIMETVTLSLSLNLGVHEMLEAEFHVRVAEQEAERRSTSKRRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="32241" PGL_stop="31363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32241" e_stop="31363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="32241" e_stop="31363" e_length="879"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32241" stop="31363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346957" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGGTCAGTCATGTTATATGAAAAGCAATCCACTATTCTTTAGTTTCGTTAGCGTGATAGTGAAAAATTTATTTTCAGGTGCTTTTATGGATGCCATTAGTGGAATGGAATTTGACTTTGTTGCTTCGGGACATTATGCAAAGATTGTCCATGCATCTACTGAGCAGCTGGACGAACCTTCTGTCTTGGAATTGTCAAAAGATATGGTGTGTTTTTATATTCGTACATGTTTCTTAGAGCCTCTTACCCTATTTTCTTTTGTAAAAGTTTGATATGTTCACTTGAGAAGGGGATATCTTGAAGATGAGAGTGGTGTGGAAGAGTCTTGCTTCACTGTAGGTAAAATGAAGAACATATGGGAAATGACTTACAGATATACATGGTTGGGAATTAAACATTATAGTCCCATCAAAAGAAGTTCTTTTGTAAGAGACAGACATTTAGCAGTTGAGGATACAAAGTTTGATTTAACACCTTCCCAACCCACCTAGCCCCCGTTGCTTTTAACCAAGATATCTTCTTTGAACTTATGATCAACGTCTTTCACGACTGTCTGTATAATTCTTTCAGGTAAATTTGGTATATGTTTCTTGAGATATATTACATTTGGTTCTTATCTTGAAAAATATAGTAAATGTGATGAAGCGTCTTAAGATATATCTCATAATGAAATTGTAATGTAGATCTCGAAATTATGATTAAAAACAGATAAATAAAACAACCAAAGCAAATATATTATTCTGTTGAAGGTTCATATGTAGTATCAATACTGCTCCAAGAATGATGGTTAACTAGGAGTTCATCATCTTTTGATACAGAAGAAATAGTTTAATTTGCCACACTTCAATTCCTGATTTACTGAGAGTTTTACATCTTA</gDNA_template>
            <first_frame> I  W  S  V  M  L  Y  E  K  Q  S  T  I  L  *  F  R  *  R  D  S  E  K  F  I  F  R  C  F  Y  G  C  H  *  W  N  G  I  *  L  C  C  F  G  T  L  C  K  D  C  P  C  I  Y  *  A  A  G  R  T  F  C  L  G  I  V  K  R  Y  G  V  F  L  Y  S  Y  M  F  L  R  A  S  Y  P  I  F  F  C  K  S  L  I  C  S  L  E  K  G  I  S  *  R  *  E  W  C  G  R  V  L  L  H  C  R  *  N  E  E  H  M  G  N  D  L  Q  I  Y  M  V  G  N  *  T  L  *  S  H  Q  K  K  F  F  C  K  R  Q  T  F  S  S  *  G  Y  K  V  *  F  N  T  F  P  T  H  L  A  P  V  A  F  N  Q  D  I  F  F  E  L  M  I  N  V  F  H  D  C  L  Y  N  S  F  R  *  I  W  Y  M  F  L  E  I  Y  Y  I  W  F  L  S  *  K  I  *  *  M  *  *  S  V  L  R  Y  I  S  *  *  N  C  N  V  D  L  E  I  M  I  K  N  R  *  I  K  Q  P  K  Q  I  Y  Y  S  V  E  G  S  Y  V  V  S  I  L  L  Q  E  *  W  L  T  R  S  S  S  S  F  D  T  E  E  I  V  *  F  A  T  L  Q  F  L  I  Y  *  E  F  Y  I  L </first_frame>
            <second_frame>  F  G  Q  S  C  Y  M  K  S  N  P  L  F  F  S  F  V  S  V  I  V  K  N  L  F  S  G  A  F  M  D  A  I  S  G  M  E  F  D  F  V  A  S  G  H  Y  A  K  I  V  H  A  S  T  E  Q  L  D  E  P  S  V  L  E  L  S  K  D  M  V  C  F  Y  I  R  T  C  F  L  E  P  L  T  L  F  S  F  V  K  V  *  Y  V  H  L  R  R  G  Y  L  E  D  E  S  G  V  E  E  S  C  F  T  V  G  K  M  K  N  I  W  E  M  T  Y  R  Y  T  W  L  G  I  K  H  Y  S  P  I  K  R  S  S  F  V  R  D  R  H  L  A  V  E  D  T  K  F  D  L  T  P  S  Q  P  T  *  P  P  L  L  L  T  K  I  S  S  L  N  L  *  S  T  S  F  T  T  V  C  I  I  L  S  G  K  F  G  I  C  F  L  R  Y  I  T  F  G  S  Y  L  E  K  Y  S  K  C  D  E  A  S  *  D  I  S  H  N  E  I  V  M  *  I  S  K  L  *  L  K  T  D  K  *  N  N  Q  S  K  Y  I  I  L  L  K  V  H  M  *  Y  Q  Y  C  S  K  N  D  G  *  L  G  V  H  H  L  L  I  Q  K  K  *  F  N  L  P  H  F  N  S  *  F  T  E  S  F  T  S   </second_frame>
            <third_frame>   L  V  S  H  V  I  *  K  A  I  H  Y  S  L  V  S  L  A  *  *  *  K  I  Y  F  Q  V  L  L  W  M  P  L  V  E  W  N  L  T  L  L  L  R  D  I  M  Q  R  L  S  M  H  L  L  S  S  W  T  N  L  L  S  W  N  C  Q  K  I  W  C  V  F  I  F  V  H  V  S  *  S  L  L  P  Y  F  L  L  *  K  F  D  M  F  T  *  E  G  D  I  L  K  M  R  V  V  W  K  S  L  A  S  L  *  V  K  *  R  T  Y  G  K  *  L  T  D  I  H  G  W  E  L  N  I  I  V  P  S  K  E  V  L  L  *  E  T  D  I  *  Q  L  R  I  Q  S  L  I  *  H  L  P  N  P  P  S  P  R  C  F  *  P  R  Y  L  L  *  T  Y  D  Q  R  L  S  R  L  S  V  *  F  F  Q  V  N  L  V  Y  V  S  *  D  I  L  H  L  V  L  I  L  K  N  I  V  N  V  M  K  R  L  K  I  Y  L  I  M  K  L  *  C  R  S  R  N  Y  D  *  K  Q  I  N  K  T  T  K  A  N  I  L  F  C  *  R  F  I  C  S  I  N  T  A  P  R  M  M  V  N  *  E  F  I  I  F  *  Y  R  R  N  S  L  I  C  H  T  S  I  P  D  L  L  R  V  L  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32240" stop="31968"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGQSCYMKSNPLFFSFVSVIVKNLFSGAFMDAISGMEFDFVASGHYAKIVHASTEQLDEPSVLELSKDMVCFYIRTCFLEPLTLFSFVKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLf0041H22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31967" stop="31749"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVHLRRGYLEDESGVEESCFTVGKMKNIWEMTYRYTWLGIKHYSPIKRSSFVRDRHLAVEDTKFDLTPSQPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 15504 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 1938 bytes was the average size of a spliced alignment
$ 11880 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1980 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 11 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 14:20:41
-->
