<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 12:56:24"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="727" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="415" g_stop="47" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="415" e_stop="47"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGAATATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACTTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAG-TTCAAAGTTATTCGTCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATATCTTTACATTACTACAATTAATGTAAAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAATAAAAGGTTAATTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGG-TTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="17207" stop="18455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17507" g_stop="18155" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17507" e_stop="18155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGACTGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGACATCAGATATCCATCGGAGTATAGCTTAAGATCGACCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGATTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATTTGGTCATACAGCGTTCGGGGAGAAAGATTATTACTTGCAAGTGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATTTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAACATTTGTACATGGAGAGTTGGAGGAAGATATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="17208" stop="18192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17508" g_stop="17892" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17508" e_stop="17892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGACTGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGACATCAGATATCCATCGGAGTATAGCTTAAGATCGACCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGATTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATTTGGTCATACAGCGTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="17866" stop="19273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18166" g_stop="18973" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18166" e_stop="18973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGATCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTTTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTTCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAAAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACATTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGTTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGTTCTGTCATCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="19818" stop="20788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20118" g_stop="20534" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20118" e_stop="20534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTATGTGGAAAACACTTCGATGTGAAGAGTAAAAAACCACGAGACCAAAAGCTCCACCATAATCACAAAGAGTTACAATATTGTTCTCC-AAATTGGCCACAAAAC-AAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCACAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGCCCAACAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCAGACAAGAAACGAAGCGGGAATCACAATTTGAAGTTGGTTGTTAGGGCT-GAATTTTGACTGCGAAAAACCGCTCTCTTTCTCTCTTTTTGGCTGCTGAAAAAACTCTCTGT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTC-TTTTAGCTGCTG-AAAAACTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="22715" stop="21908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22415" g_stop="22208" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22415" e_stop="22208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCATTTTGAGAGCAAAGTGAGATATTCCATAGACTATACAAGATAAACAGTCTGTGAAAAAAAATGGAGTGTGAGCAATATTTTAGTAAGGTGGAAAGCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTATACAGTATAAAATTCCTTACTATAGTGATATCAGTTGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706346" ref_strand="+" ref_description="SGN-E706346 [FA29CH02]">
      <seq>cttttctgcttgaagttgcctgtggtgggaggccaatagagccaagacaagacgatgatgatctgattttagtcgattgggtggtcttgtgctggaataggggtaatattcttgaggcagttgatccaaacatagggattgattttgttccagggaaagtggagttggtcttaaagctaggcttgttttgctctcattcagagccctcatttaggccaaccatgcgacaaatcttgctgttcttggatggtgttgtggccttaccagagttatcatcactcagtatttcatcagctggtttaaccattgtatccatcttcagtagttagtccacattttcgctctccatctgcaagcttaaatatgtagtaacttaagcttgtaagctataatcatgcttaattttctcatcaatttggcttcaacttagtagcatacatatagtcagctaataatctgcatgcataagaacttgctcatatgttacttccattgtttcctgcagagctaccatttaatttagaagttaccttgcttggaagtttagcaaactcaacgacacggattgcctagtaattttcttgtgaaacctacatatccaagattacaattacaattaccacctgaagacttccaacagcacttccaagctaaatcccagtcatcgcggcaatgccacaccaggcatgttgttgctgtggagtgctgagtttgacaagctatataacaacatgttatatttgttactatacaaataatgtactaatgtacaagcagaatctcagttctttgatctttactgttatgttcttttccctttataaattttttttaaaattaagttttaagtcaactatatgatgtagaaatttcttcttctgttccttattcaaacttcctcattgagcccaacaatgacttttggggatatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="27052" stop="28584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27352" g_stop="28278" g_length="927"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="927" r_length="927" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="933" polyA_stop="944"/>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E706346" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27352" e_stop="28278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTGCTTGAAGTTGCCTGTGGTGGGAGGCCAATAGAGCCAAGACAAGACGATGATGATCTGATTTTAGTCGATTGGGTGGTCTTGTGCTGGAATAGGGGTAATATTCTTGAGGCAGTTGATCCAAACATAGGGATTGATTTTGTTCCAGGGAAAGTGGAGTTGGTCTTAAAGCTAGGCTTGTTTTGCTCTCATTCAGAGCCCTCATTTAGGCCAACCATGCGACAAATCTTGCTGTTCTTGGATGGTGTTGTGGCCTTACCAGAGTTATCATCACTCAGTATTTCATCAGCTGGTTTAACCATTGTATCCATCTTCAGTAGTTAGTCCACATTTTCGCTCTCCATCTGCAAGCTTAAATATGTAGTAACTTAAGCTTGTAAGCTATAATCATGCTTAATTTTCTCATCAATTTGGCTTCAACTTAGTAGCATACATATAGTCAGCTAATAATCTGCATGCATAAGAACTTGCTCATATGTTACTTCCATTGTTTCCTGCAGAGCTACCATTTAATTTAGAAGTTACCTTGCTTGGAAGTTTAGCAAACTCAACGACACGGATTGCCTAGTAATTTTCTTGTGAAACCTACATATCCAAGATTACAATTACAATTACCACCTGAAGACTTCCAACAGCACTTCCAAGCTAAATCCCAGTCATCGCGGCAATGCCACACCAGGCATGTTGTTGCTGTGGAGTGCTGAGTTTGACAAGCTATATAACAACATGTTATATTTGTTACTATACAAATAATGTACTAATGTACAAGCAGAATCTCAGTTCTTTGATCTTTACTGTTATGTTCTTTTCCCTTTATAAATTTTTTTTAAAATTAAGTTTTAAGTCAACTATATGATGTAG-AATTTCTTCTTTCTGTTCCTTATTCAAACTTCCTCATTGAGCCCAACAATGACTTTTGGGG</genome_strand>
        <mrna_strand>CTTTTCTGCTTGAAGTTGCCTGTGGTGGGAGGCCAATAGAGCCAAGACAAGACGATGATGATCTGATTTTAGTCGATTGGGTGGTCTTGTGCTGGAATAGGGGTAATATTCTTGAGGCAGTTGATCCAAACATAGGGATTGATTTTGTTCCAGGGAAAGTGGAGTTGGTCTTAAAGCTAGGCTTGTTTTGCTCTCATTCAGAGCCCTCATTTAGGCCAACCATGCGACAAATCTTGCTGTTCTTGGATGGTGTTGTGGCCTTACCAGAGTTATCATCACTCAGTATTTCATCAGCTGGTTTAACCATTGTATCCATCTTCAGTAGTTAGTCCACATTTTCGCTCTCCATCTGCAAGCTTAAATATGTAGTAACTTAAGCTTGTAAGCTATAATCATGCTTAATTTTCTCATCAATTTGGCTTCAACTTAGTAGCATACATATAGTCAGCTAATAATCTGCATGCATAAGAACTTGCTCATATGTTACTTCCATTGTTTCCTGCAGAGCTACCATTTAATTTAGAAGTTACCTTGCTTGGAAGTTTAGCAAACTCAACGACACGGATTGCCTAGTAATTTTCTTGTGAAACCTACATATCCAAGATTACAATTACAATTACCACCTGAAGACTTCCAACAGCACTTCCAAGCTAAATCCCAGTCATCGCGGCAATGCCACACCAGGCATGTTGTTGCTGTGGAGTGCTGAGTTTGACAAGCTATATAACAACATGTTATATTTGTTACTATACAAATAATGTACTAATGTACAAGCAGAATCTCAGTTCTTTGATCTTTACTGTTATGTTCTTTTCCCTTTATAAATTTTTTTTAAAATTAAGTTTTAAGTCAACTATATGATGTAGAAATTTCTTC-TTCTGTTCCTTATTCAAACTTCCTCATTGAGCCCAACAATGACTTTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="36762" stop="35716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36462" g_stop="36016" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36462" e_stop="36016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAACTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTAGCCTTTTTCTCTGCAATTTTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTCCTGGGAGAGAGACG-CTGGCAAATTTTAGATAAAGTTTGCTATGGAGCACAATTAAATTAAACCCTAGCTATTCTATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="36763" stop="35868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36463" g_stop="36142" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36463" e_stop="36142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAACTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTAGCCTTTTTCTCTGCAATTTTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="36763" stop="35868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36463" g_stop="36173" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36463" e_stop="36173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAACTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTAGCCTTTTTCTCTGCAATTTTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367813" ref_strand="+" ref_description="SGN-E367813 [TUS-22-A7]">
      <seq>ggtgatccaattcaatcatatgcaaagttgccaagctactttcacatactagaggcaacttaccctggttctcatataagatttcacaaatcagaggatgaccattttttatatgcgtttgtagctttgttcacctcaataaaaggaaaaaggatgggaatattgtagaccaattgtagttattttgtaattttcttaaaaggagcatacaaagggacactgctaaccactaataccgtagatgcagcagggagtatattgccacttgcatatgctattgtcgattcagagaatgattcatcttggaggtagtttttttagcaattcagagatgctttcggtcaaagaccatagatgtgtatcgttttcgataggcatgcagttattaaggcagtttcaacagtttatgatgaagtacctcattttgcatgtatgtggcacttaatgcaaaacataatgaaaaattttagaagaagtcaacaaagggtcactgagttgttctactctatggcaaaaacatacaccatgacagaatttaattcaatgtatgacaatggttgagaagatagataagaggatcaaagattacttgttgaacattggatacaacanatggtcgcgtgtgcatgctgaagtaaacagaacttggatgatgacatcaaatatagcagaatcagtcaattcacgaacaagacatgccaaagttcttacagtcttgcaactcttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="51634" stop="50187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51334" g_stop="51091" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51090" i_stop="50970" i_length="121">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50969" g_stop="50487" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="731" r_length="481" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E367813" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51334" e_stop="51091"/>
          <exon e_start="50969" e_stop="50487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCGACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCGTTTTTTATATGCGTTTGTAGCTTTGTTCACCTCGAT-------AAAAGGATGGGAATATTGTAGACCAATTGTAGTTGTTGATGGAACTTTCTTAAAAGGAGCATACAAAGGGACACTGTTAACCGCTAATACCTTAGATGCAGCAGGTCAGACTTTCGAATATGATACTGTTTTTTATATTGAATTTTTGAACTATGTATTAAAATTGAATTATGATTGTAGTAAAAATGTATTAAACTTGTATTAAAAAAAGTGTACATGGTGCAGGGAGTATATTGCCACTTGCTTATGCTATTGTCGATTCAGAGAATGATTCATCTTGGGGGTGGTTTTTTGAGCAATTCAGAGATGCATTTGGTCAAAGACCAGAGATGTGTATCGTTTCCGATAGGCATGCAAGCATTATTAAGGCAGTTTCAACAGTTTATGATGAAGTACCTCATTTTGCATGTATGTGGCACTTACTGCAAAACATAATGAAAAATTTCAGAAGAAGTCAACAAAGGGTCACTGAGTTGTTCTACTCTATGGCAAAAACATACACCATGACAGAATTTAA-TCAATGTATGACAATGGTTGAGAAGATAGATAAGAGGATCAAAGATTACTTGTTGAACATTGGATACAACAAATGGTCACGTGTGCATGCTGAAGTAAACAGAACTTGGATAATGACATCAAATATAGCAGAATCAGTCAATTCACGAACAAGACATGCCAAAGTTCTTACAGTCTTGCAACTCTTGGAAT</genome_strand>
        <mrna_strand>GGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCAACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCATTTTTTATATGCGTTTGTAGCTTTGTTCACCTCAATAAAAGGAAAAAGGATGGGAATATTGTAGACCAATTGTAGTTATT-TTGTAATTTTCTTAAAAGGAGCATACAAAGGGACACTGCTAACCACTAATACCGTAGATGCAGCAG.........................................................................................................................GGAGTATATTGCCACTTGCATATGCTATTGTCGATTCAGAGAATGATTCATCTTGGAGGTAGTTTTTTTAGCAATTCAGAGATGCTTTCGGTCAAAGACCATAGATGTGTATCGTTTTCGATAGGCATGC-AG--TTATTAAGGCAGTTTCAACAGTTTATGATGAAGTACCTCATTTTGCATGTATGTGGCACTTAATGCAAAACATAATGAAAAATTTTAGAAGAAGTCAACAAAGGGTCACTGAGTTGTTCTACTCTATGGCAAAAACATACACCATGACAGAATTTAATTCAATGTATGACAATGGTTGAGAAGATAGATAAGAGGATCAAAGATTACTTGTTGAACATTGGATACAACANATGGTCGCGTGTGCATGCTGAAGTAAACAGAACTTGGATGATGACATCAAATATAGCAGAATCAGTCAATTCACGAACAAGACATGCCAAAGTTCTTACAGTCTTGCAACTCTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235472" ref_strand="+" ref_description="SGN-E235472 [cLED-11-O7]">
      <seq>ggtgatccaattcaatcatatgcaaagttgccaagctactttcacatactagaggcaacttaccctggttctcatataagatttcacaaatcagaggatgaccattttttatatgcgtttgtagctttgttcacctcaataaaaggaaaaaggatgggaatattgtagaccaattgtagttattttgtaattttcttaaaaggagcatacaaagggacactgctaaccactaataccgtagatgcagcagggagtatattgccacttgcatatgctattgtcgattcagagaatgattcatcttggaggtagtttttttagcaattcagagatgctttcggtcaaagaccatagatgtgtatcgttttcgataggcatgcagttattaaggcagtttcaacagtttatgatgaagtacctcattttgcatgtatgtggcacttaatgcaaaacataatgaaaaattttagaagaagtcaacaaagggtcactgagttgttctactctatggcaaaaacatacaccatgacagaatttaatcaatgtatgacaatggttgagaagatagataagaggatcaaagattacttgttgaacattggatacaacaaatggtcgcgtgtgcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="51634" stop="50288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51334" g_stop="51091" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51090" i_stop="50970" i_length="121">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50969" g_stop="50588" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="629" r_length="379" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E235472" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51334" e_stop="51091"/>
          <exon e_start="50969" e_stop="50588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCGACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCGTTTTTTATATGCGTTTGTAGCTTTGTTCACCTCGAT-------AAAAGGATGGGAATATTGTAGACCAATTGTAGTTGTTGATGGAACTTTCTTAAAAGGAGCATACAAAGGGACACTGTTAACCGCTAATACCTTAGATGCAGCAGGTCAGACTTTCGAATATGATACTGTTTTTTATATTGAATTTTTGAACTATGTATTAAAATTGAATTATGATTGTAGTAAAAATGTATTAAACTTGTATTAAAAAAAGTGTACATGGTGCAGGGAGTATATTGCCACTTGCTTATGCTATTGTCGATTCAGAGAATGATTCATCTTGGGGGTGGTTTTTTGAGCAATTCAGAGATGCATTTGGTCAAAGACCAGAGATGTGTATCGTTTCCGATAGGCATGCAAGCATTATTAAGGCAGTTTCAACAGTTTATGATGAAGTACCTCATTTTGCATGTATGTGGCACTTACTGCAAAACATAATGAAAAATTTCAGAAGAAGTCAACAAAGGGTCACTGAGTTGTTCTACTCTATGGCAAAAACATACACCATGACAGAATTTAATCAATGTATGACAATGGTTGAGAAGATAGATAAGAGGATCAAAGATTACTTGTTGAACATTGGATACAACAAATGGTCACGTGTGCATGC</genome_strand>
        <mrna_strand>GGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCAACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCATTTTTTATATGCGTTTGTAGCTTTGTTCACCTCAATAAAAGGAAAAAGGATGGGAATATTGTAGACCAATTGTAGTTATT-TTGTAATTTTCTTAAAAGGAGCATACAAAGGGACACTGCTAACCACTAATACCGTAGATGCAGCAG.........................................................................................................................GGAGTATATTGCCACTTGCATATGCTATTGTCGATTCAGAGAATGATTCATCTTGGAGGTAGTTTTTTTAGCAATTCAGAGATGCTTTCGGTCAAAGACCATAGATGTGTATCGTTTTCGATAGGCATGC-AG--TTATTAAGGCAGTTTCAACAGTTTATGATGAAGTACCTCATTTTGCATGTATGTGGCACTTAATGCAAAACATAATGAAAAATTTTAGAAGAAGTCAACAAAGGGTCACTGAGTTGTTCTACTCTATGGCAAAAACATACACCATGACAGAATTTAATCAATGTATGACAATGGTTGAGAAGATAGATAAGAGGATCAAAGATTACTTGTTGAACATTGGATACAACAAATGGTCGCGTGTGCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392248" ref_strand="+" ref_description="SGN-E392248 [TUS-36-K12]">
      <seq>gggtgatccaattcaatcatatgcaaagttgccaagctactttcacatactagaggcaacttaccctggttctcatataagatttcacaaatcagaggatgaccattttttatatgcgtttgtagctttgttcacctcaataaaaggaaaaaggatgggaatattgtagaccaattgtagttattttgtaattttcttaaaaggagcatacaaagggacactgctaaccactaataccgtagatgcagcagggagtatattgccacttgcatatgctattgtcgattcagagaatgattcatcttggaggtagtttttttagcaattcagagatgctttcggtcaaagaccatagatgtgtatcgttttcgataggcatgcagttattaaggcagtttcaacagtttatgatgaagtacctcattttgcatgtatgtggcacttaatgcaaaacataatgaaaaattttagaagaagtcaacaaagggtcactgagttgttctactctatggcaaaaacatacaccatgacagaatttaatcaatgtatgacaatggtttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="51635" stop="50354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51335" g_stop="51091" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51090" i_stop="50970" i_length="121">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50969" g_stop="50654" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="564" r_length="313" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E392248" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51335" e_stop="51091"/>
          <exon e_start="50969" e_stop="50654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCGACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCGTTTTTTATATGCGTTTGTAGCTTTGTTCACCTCGAT-------AAAAGGATGGGAATATTGTAGACCAATTGTAGTTGTTGATGGAACTTTCTTAAAAGGAGCATACAAAGGGACACTGTTAACCGCTAATACCTTAGATGCAGCAGGTCAGACTTTCGAATATGATACTGTTTTTTATATTGAATTTTTGAACTATGTATTAAAATTGAATTATGATTGTAGTAAAAATGTATTAAACTTGTATTAAAAAAAGTGTACATGGTGCAGGGAGTATATTGCCACTTGCTTATGCTATTGTCGATTCAGAGAATGATTCATCTTGGGGGTGGTTTTTTGAGCAATTCAGAGATGCATTTGGTCAAAGACCAGAGATGTGTATCGTTTCCGATAGGCATGCAAGCATTATTAAGGCAGTTTCAACAGTTTATGATGAAGTACCTCATTTTGCATGTATGTGGCACTTACTGCAAAACATAATGAAAAATTTCAGAAGAAGTCAACAAAGGGTCACTGAGTTGTTCTACTCTATGGCAAAAACATACACCATGACAGAATTTAATCAATGTATGACAATGGTTGAGAA</genome_strand>
        <mrna_strand>GGGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCAACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCATTTTTTATATGCGTTTGTAGCTTTGTTCACCTCAATAAAAGGAAAAAGGATGGGAATATTGTAGACCAATTGTAGTTATT-TTGTAATTTTCTTAAAAGGAGCATACAAAGGGACACTGCTAACCACTAATACCGTAGATGCAGCAG.........................................................................................................................GGAGTATATTGCCACTTGCATATGCTATTGTCGATTCAGAGAATGATTCATCTTGGAGGTAGTTTTTTTAGCAATTCAGAGATGCTTTCGGTCAAAGACCATAGATGTGTATCGTTTTCGATAGGCATGC-AG--TTATTAAGGCAGTTTCAACAGTTTATGATGAAGTACCTCATTTTGCATGTATGTGGCACTTAATGCAAAACATAATGAAAAATTTTAGAAGAAGTCAACAAAGGGTCACTGAGTTGTTCTACTCTATGGCAAAAACATACACCATGACAGAATTTAATCAATGTATGACAATGGTTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228402" ref_strand="+" ref_description="SGN-E228402 [cLED-3-J2]">
      <seq>ggtgatccaattcaatcatatgcaaagttgccaagctactttcacatactagaggcaacttaccctggttctcatataagatttcacaaatcagaggatgaccattttttatatgcgtttgtagctttgttcacctcaataaaaggaaaaaggatgggaatattgtagaccaattgtagttattttgtaattttcttaaaaggagcatacaaagggacactgctaaccactaataccgtagatgcagcagggagtatattgccacttgcatatgctattgtcgattcagagaatgattcatcttggaggtagtttttttagcaattcagagatgctttcggtcaaagaccatagatgtgtatcgttttcgataggcatgcagttattaaggcagtttcaacagtttatgatgaagtacctcattttgcatgtatgtggcacttaatgcaaaacataatgaaaaattttagaagaagtcaacaaagggtcactgagttgttctacttctatggcaaaaacatacaccatgacagaatttaatcaatgtatgacaatggttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="51634" stop="50356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51334" g_stop="51091" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51090" i_stop="50970" i_length="121">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50969" g_stop="50656" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="562" r_length="312" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E228402" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51334" e_stop="51091"/>
          <exon e_start="50969" e_stop="50656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCGACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCGTTTTTTATATGCGTTTGTAGCTTTGTTCACCTCGAT-------AAAAGGATGGGAATATTGTAGACCAATTGTAGTTGTTGATGGAACTTTCTTAAAAGGAGCATACAAAGGGACACTGTTAACCGCTAATACCTTAGATGCAGCAGGTCAGACTTTCGAATATGATACTGTTTTTTATATTGAATTTTTGAACTATGTATTAAAATTGAATTATGATTGTAGTAAAAATGTATTAAACTTGTATTAAAAAAAGTGTACATGGTGCAGGGAGTATATTGCCACTTGCTTATGCTATTGTCGATTCAGAGAATGATTCATCTTGGGGGTGGTTTTTTGAGCAATTCAGAGATGCATTTGGTCAAAGACCAGAGATGTGTATCGTTTCCGATAGGCATGCAAGCATTATTAAGGCAGTTTCAACAGTTTATGATGAAGTACCTCATTTTGCATGTATGTGGCACTTACTGCAAAACATAATGAAAAATTTCAGAAGAAGTCAACAAAGGGTCACTGAGTTGTTCTAC-TCTATGGCAAAAACATACACCATGACAGAATTTAATCAATGTATGACAATGGTTGAG</genome_strand>
        <mrna_strand>GGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCAACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCATTTTTTATATGCGTTTGTAGCTTTGTTCACCTCAATAAAAGGAAAAAGGATGGGAATATTGTAGACCAATTGTAGTTATT-TTGTAATTTTCTTAAAAGGAGCATACAAAGGGACACTGCTAACCACTAATACCGTAGATGCAGCAG.........................................................................................................................GGAGTATATTGCCACTTGCATATGCTATTGTCGATTCAGAGAATGATTCATCTTGGAGGTAGTTTTTTTAGCAATTCAGAGATGCTTTCGGTCAAAGACCATAGATGTGTATCGTTTTCGATAGGCATGC-AG--TTATTAAGGCAGTTTCAACAGTTTATGATGAAGTACCTCATTTTGCATGTATGTGGCACTTAATGCAAAACATAATGAAAAATTTTAGAAGAAGTCAACAAAGGGTCACTGAGTTGTTCTACTTCTATGGCAAAAACATACACCATGACAGAATTTAATCAATGTATGACAATGGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240117" ref_strand="+" ref_description="SGN-E240117 [cLED-32-M8]">
      <seq>ggtgatccaattcaatcatatgcaaagttgccaagctactttcacatactagaggcaacttaccctggttctcatataagatttcacaaatcagaggatgaccattttttatatgcgtttgtagctttgttcacctcaataaaaggaaaaaggatgggaatattgtagaccaattgtagttattttgtaattttcttaaaaggagcatacaaagggacactgctaaccactaataccgtagatgcagcagggagtatattgccacttgcatatgctattgtcgattcagagaatgattcatcttggaggtagtttttttagcaattcagagatgctttcggtcaaagaccatagatgtgtatcgttttcgataggcatgcagttattaaggcagtttcaacagtttatgatgaagtacctcattttgcatgtatgtggcacttaatgcaaaacataatgaaaaattttagaagaaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="51634" stop="50438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51334" g_stop="51091" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51090" i_stop="50970" i_length="121">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50969" g_stop="50738" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="480" r_length="230" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E240117" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51334" e_stop="51091"/>
          <exon e_start="50969" e_stop="50738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCGACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCGTTTTTTATATGCGTTTGTAGCTTTGTTCACCTCGAT-------AAAAGGATGGGAATATTGTAGACCAATTGTAGTTGTTGATGGAACTTTCTTAAAAGGAGCATACAAAGGGACACTGTTAACCGCTAATACCTTAGATGCAGCAGGTCAGACTTTCGAATATGATACTGTTTTTTATATTGAATTTTTGAACTATGTATTAAAATTGAATTATGATTGTAGTAAAAATGTATTAAACTTGTATTAAAAAAAGTGTACATGGTGCAGGGAGTATATTGCCACTTGCTTATGCTATTGTCGATTCAGAGAATGATTCATCTTGGGGGTGGTTTTTTGAGCAATTCAGAGATGCATTTGGTCAAAGACCAGAGATGTGTATCGTTTCCGATAGGCATGCAAGCATTATTAAGGCAGTTTCAACAGTTTATGATGAAGTACCTCATTTTGCATGTATGTGGCACTTACTGCAAAACATAATGAAAAATTTCAGAAG-AAGTCA</genome_strand>
        <mrna_strand>GGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCAACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCATTTTTTATATGCGTTTGTAGCTTTGTTCACCTCAATAAAAGGAAAAAGGATGGGAATATTGTAGACCAATTGTAGTTATT-TTGTAATTTTCTTAAAAGGAGCATACAAAGGGACACTGCTAACCACTAATACCGTAGATGCAGCAG.........................................................................................................................GGAGTATATTGCCACTTGCATATGCTATTGTCGATTCAGAGAATGATTCATCTTGGAGGTAGTTTTTTTAGCAATTCAGAGATGCTTTCGGTCAAAGACCATAGATGTGTATCGTTTTCGATAGGCATGC-AG--TTATTAAGGCAGTTTCAACAGTTTATGATGAAGTACCTCATTTTGCATGTATGTGGCACTTAATGCAAAACATAATGAAAAATTTTAGAAGAAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240889" ref_strand="+" ref_description="SGN-E240889 [cLED-24-E7]">
      <seq>ggtgatccaattcaatcatatgcaaagttgccaagctactttcacatactagaggcaacttaccctggttctcatataagatttcacaaatcagaggatgaccattttttatatgcgtttgtagctttgttcacctcaataaaaggaaaaaggatgggaatattgtagaccaattgtagttattttgtaattttcttaaaaggagcatacaaagggacactgctaaccactaataccgtagatgcagcagggagtatattgccacttgcatatgctattgtcgattcagagaatgattcatcttggaggtagtttttttagcaattcagagatgctttcggtcaaagaccatagatgtgtatcgttttcgataggcatgcagttattaaggcagtttcaacagtttatgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="51634" stop="50503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51334" g_stop="51091" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51090" i_stop="50970" i_length="121">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50969" g_stop="50803" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="414" r_length="164" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E240889" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51334" e_stop="51091"/>
          <exon e_start="50969" e_stop="50803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCGACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCGTTTTTTATATGCGTTTGTAGCTTTGTTCACCTCGAT-------AAAAGGATGGGAATATTGTAGACCAATTGTAGTTGTTGATGGAACTTTCTTAAAAGGAGCATACAAAGGGACACTGTTAACCGCTAATACCTTAGATGCAGCAGGTCAGACTTTCGAATATGATACTGTTTTTTATATTGAATTTTTGAACTATGTATTAAAATTGAATTATGATTGTAGTAAAAATGTATTAAACTTGTATTAAAAAAAGTGTACATGGTGCAGGGAGTATATTGCCACTTGCTTATGCTATTGTCGATTCAGAGAATGATTCATCTTGGGGGTGGTTTTTTGAGCAATTCAGAGATGCATTTGGTCAAAGACCAGAGATGTGTATCGTTTCCGATAGGCATGCAAGCATTATTAAGGCAGTTTCAACAGTTTATGATGAA</genome_strand>
        <mrna_strand>GGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCAACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCATTTTTTATATGCGTTTGTAGCTTTGTTCACCTCAATAAAAGGAAAAAGGATGGGAATATTGTAGACCAATTGTAGTTATT-TTGTAATTTTCTTAAAAGGAGCATACAAAGGGACACTGCTAACCACTAATACCGTAGATGCAGCAG.........................................................................................................................GGAGTATATTGCCACTTGCATATGCTATTGTCGATTCAGAGAATGATTCATCTTGGAGGTAGTTTTTTTAGCAATTCAGAGATGCTTTCGGTCAAAGACCATAGATGTGTATCGTTTTCGATAGGCATGC-AG--TTATTAAGGCAGTTTCAACAGTTTATGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231206" ref_strand="+" ref_description="SGN-E231206 [cLED-5-M24]">
      <seq>ggtgatccaattcaatcatatgcaaagttgccaagctactttcacatactagaggcaacttaccctggttctcatataagatttcacaaatcagaggatgaccattttttatatgcgtttgtagctttgttcacctcaataaaaggaaaaaggatgggaatattgtagaccaattgtagttattttgtaattttcttaaaaggagcatacaaagggacactgctaaccactaataccgtagatgcagcagggagtatattgccacttgcatatgctattgtcgattcagagaatgattcatcttggaggtagtttttttagcaattcagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="51634" stop="50588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51334" g_stop="51091" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51090" i_stop="50970" i_length="121">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50969" g_stop="50888" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="332" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E231206" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51334" e_stop="51091"/>
          <exon e_start="50969" e_stop="50888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCGACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCGTTTTTTATATGCGTTTGTAGCTTTGTTCACCTCGAT-------AAAAGGATGGGAATATTGTAGACCAATTGTAGTTGTTGATGGAACTTTCTTAAAAGGAGCATACAAAGGGACACTGTTAACCGCTAATACCTTAGATGCAGCAGGTCAGACTTTCGAATATGATACTGTTTTTTATATTGAATTTTTGAACTATGTATTAAAATTGAATTATGATTGTAGTAAAAATGTATTAAACTTGTATTAAAAAAAGTGTACATGGTGCAGGGAGTATATTGCCACTTGCTTATGCTATTGTCGATTCAGAGAATGATTCATCTTGGGGGTGGTTTTTTGAGCAATTCAGAGA</genome_strand>
        <mrna_strand>GGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCAACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCATTTTTTATATGCGTTTGTAGCTTTGTTCACCTCAATAAAAGGAAAAAGGATGGGAATATTGTAGACCAATTGTAGTTATT-TTGTAATTTTCTTAAAAGGAGCATACAAAGGGACACTGCTAACCACTAATACCGTAGATGCAGCAG.........................................................................................................................GGAGTATATTGCCACTTGCATATGCTATTGTCGATTCAGAGAATGATTCATCTTGGAGGTAGTTTTTTTAGCAATTCAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253404" ref_strand="-" ref_description="SGN-E253404 [cLEG-24-G18]">
      <seq>gtgaactaaaattgaattgaagttgtattacacaaatactaacaagtgaattaaacatgaattaaagctgtattacactaatgctaacaagtgaattaaacttgaattaaaattgtattacacagatgttaacaagtgaattaaatcggaattaaagttgtattacacggatgctaacaagtgaatcaaacttgaattaaagttgtattacacagatgttaacaattgaattaaaccggaattaaagttgtattacacggatgctaacaagtgaactaaaactgaattgaagttgtattacataaatgctaaaaagtgaattaaacctgaattaaagttgtattacacagatgctaacaagagatcatacttattagagaagagagctgaataccagacactcacaggaacttgaatcaaacgaaatctcaacataaatcatcaaacaaaaaggcacacaagtaacgtaaacataaatcaaacgaaatctcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="52269" stop="53538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52434" g_stop="52727" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52728" i_stop="52958" i_length="231">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52959" g_stop="53014" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="350" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53015" i_stop="53092" i_length="78">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53093" g_stop="53238" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="496" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E253404" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253404" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52434" e_stop="52727"/>
          <exon e_start="52959" e_stop="53014"/>
          <exon e_start="53093" e_stop="53238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATAAAATCTAAATTAAAAATTTATCACACAAATCCTAACAAGTGAATCAAACATGAAAATAAGTTGTATTACACATATGCAAACAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAGATGCTAACAAGTGAATTAAAACTGAATTGAAGTTGAATTACACATATGCTAACAAGTGAATTAAACTTGAATTAAAGTTGTATTACACAGATGTTAACAAGTGAATTAAATCAGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACCAAAACTGAATTGAAGTTGTATTGTACAAATGCTAACAAGTGAATTAAACATGAATTAAAGCTGTATTACAAATGCTAACAAGTGAATTAAACTTGAATTAAAATTGTATTAGACAGATGCTAACAAGTGAACTAAAACTGAATTGAAGTTGAATTACACATATGCTAACAAGTGAATTAAACCTGAATTAAACTTGAATTAAAATTGTATTACACAGATGCTAACAAGTGAACTAAAACTGAATTGAAGTATTACACAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAGATGCTAACAAGTAAAATAAAACTGAATTGAAGTTGTATTACACAAATGCTAAAAAGTGAATTAAACATGAATATACAGATGCTAACAAGAGATCATACTTATTAGAGAAGAGAACTGAATACCAGACACTCACAGGAACTTGAATCAAACAAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAGCGTAAACATAAATCAAACGAAATCTCAACAT</genome_strand>
        <mrna_strand>GTGAACTAAAATTGAATTGAAGTTGTATTACACAAATACTAACAAGTGAATTAAACATGAATTAAAGCTGTATTACACTAATGCTAACAAGTGAATTAAACTTGAATTAAAATTGTATTACACAGATGTTAACAAGTGAATTAAATCGGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAATCAAACTTGAATTAAAGTTGTATTACACAGATGTTAACAATTGAATTAAACCGGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACTAAAACTGAATTGAAGTT.......................................................................................................................................................................................................................................GTATTACATAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAG..............................................................................ATGCTAACAAGAGATCATACTTATTAGAGAAGAGAGCTGAATACCAGACACTCACAGGAACTTGAATCAAACGAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAACGTAAACATAAATCAAACGAAATCTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368582" ref_strand="-" ref_description="SGN-E368582 [TUS-23-F24]">
      <seq>acggatgctaacaagtgaatcaaacttgaattaaagttgtattacacagatgttaacaattgaattaaaccggaattaaagttgtattacacggatgctaacaagtgaactaaaactgaattgaagttgtattacataaatgctaaaaagtgaattaaacctgaattaaagttgtattacacagatgctaacaagagatcatacttattagagaagagagctgaataccagacactcacaggaacttgaatcaaacgaaatctcaacataaatcatcaaacaaaaaggcacacaagtaacgtaaacataaatcaaacgaaatctcaacataaatccacacaaaaagaagaaaggcgtaacgatctgggcactgtcaagaccacaattgcaagctcacattaaaggatcagttaagtgcaaaggaaaccaacaaaaatcgcagattgcaatgcaagtaacctaaaataacagatcttactcaacactaacctttaaattgcaatggcgagagaaaattgaagtcaccgaaaaaaattgcaatcacgagagagaaaaaattgcagtcgcgagagagaaaaaaaatttgcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="52435" stop="53802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52600" g_stop="52727" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52728" i_stop="52958" i_length="231">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52959" g_stop="53014" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="184" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53015" i_stop="53092" i_length="78">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53093" g_stop="53502" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="591" r_length="407" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E368582" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368582" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52600" e_stop="52727"/>
          <exon e_start="52959" e_stop="53014"/>
          <exon e_start="53093" e_stop="53502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATGCTAACAAGTGAATTAAACTTGAATTAAAGTTGTATTACACAGATGTTAACAAGTGAATTAAATCAGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACCAAAACTGAATTGAAGTTGTATTGTACAAATGCTAACAAGTGAATTAAACATGAATTAAAGCTGTATTACAAATGCTAACAAGTGAATTAAACTTGAATTAAAATTGTATTAGACAGATGCTAACAAGTGAACTAAAACTGAATTGAAGTTGAATTACACATATGCTAACAAGTGAATTAAACCTGAATTAAACTTGAATTAAAATTGTATTACACAGATGCTAACAAGTGAACTAAAACTGAATTGAAGTATTACACAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAGATGCTAACAAGTAAAATAAAACTGAATTGAAGTTGTATTACACAAATGCTAAAAAGTGAATTAAACATGAATATACAGATGCTAACAAGAGATCATACTTATTAGAGAAGAGAACTGAATACCAGACACTCACAGGAACTTGAATCAAACAAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAGCGTAAACATAAATCAAACGAAATCTCAACATAAATTCACACAAAAAGAAGAAAGGCGTAACGATCTGGGCACTGTCAAGACCACAATTGCAAGCTCACATTAAAGGATCAGTTAAGTGCAAAGTAGACCAACAAAAATCGCAGAATGCAGTGCAAGTAACCTAAATTAACAGATCTTACTCAACACTAACCTTTAAATTGCAATGGCGAGAGAAAATTGAAGTCGCCGGAAAAAAATTGCAGTTGCGAGAGAGAGAAAAAATTGCAGTCGCGAGAGAGAAGAAAAAATTGCAGTC</genome_strand>
        <mrna_strand>ACGGATGCTAACAAGTGAATCAAACTTGAATTAAAGTTGTATTACACAGATGTTAACAATTGAATTAAACCGGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACTAAAACTGAATTGAAGTT.......................................................................................................................................................................................................................................GTATTACATAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAG..............................................................................ATGCTAACAAGAGATCATACTTATTAGAGAAGAGAGCTGAATACCAGACACTCACAGGAACTTGAATCAAACGAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAACGTAAACATAAATCAAACGAAATCTCAACATAAATCCACACAAAAAGAAGAAAGGCGTAACGATCTGGGCACTGTCAAGACCACAATTGCAAGCTCACATTAAAGGATCAGTTAAGTGCAAAGGAAACCAACAAAAATCGCAGATTGCAATGCAAGTAACCTAAAATAACAGATCTTACTCAACACTAACCTTTAAATTGCAATGGCGAGAGAAAATTGAAGTCACC-GAAAAAAATTGCA-AT-CACGAGAGAGAAAAAATTGCAGTCGCGAGAGAGAAAAAAAATTTGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243672" ref_strand="-" ref_description="SGN-E243672 [cLED-34-H18]">
      <seq>tattacacagatgttaacaattgaattaaaccggaattaaagttgtattacacggatgctaacaagtgaactaaaactgaattgaagttgtattacataaatgctaaaaagtgaattaaacctgaattaaagttgtattacacagatgctaacaagagatcatacttattagagaagagagctgaataccagacactcacaggaacttgaatcaaacgaaatctcaacataaatcatcaaacaaaaaggcacacaagtaacgtaaacataaatcaaacgaaatctcaacataaatccacacaaaaagaagaaaggcgtaacgatctgggcactgtcaagaccacaattgcaagctcacattaaaggatcagttaagtgcaaaggaaaccaacaaaaatcgcagattgcaatgcaagtaacctaaaataacagatcttactcaacactaacctttaaattgcaatggcgagagaaaattgaagtcaccgaaaaaaattgcaatcacgagagagaaaaaattgcagtcgcgagagagaaaaaaaatttgcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="52474" stop="53802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52639" g_stop="52727" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52728" i_stop="52958" i_length="231">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52959" g_stop="53014" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="145" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53015" i_stop="53092" i_length="78">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53093" g_stop="53502" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="552" r_length="407" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E243672" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243672" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52639" e_stop="52727"/>
          <exon e_start="52959" e_stop="53014"/>
          <exon e_start="53093" e_stop="53502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACACAGATGTTAACAAGTGAATTAAATCAGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACCAAAACTGAATTGAAGTTGTATTGTACAAATGCTAACAAGTGAATTAAACATGAATTAAAGCTGTATTACAAATGCTAACAAGTGAATTAAACTTGAATTAAAATTGTATTAGACAGATGCTAACAAGTGAACTAAAACTGAATTGAAGTTGAATTACACATATGCTAACAAGTGAATTAAACCTGAATTAAACTTGAATTAAAATTGTATTACACAGATGCTAACAAGTGAACTAAAACTGAATTGAAGTATTACACAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAGATGCTAACAAGTAAAATAAAACTGAATTGAAGTTGTATTACACAAATGCTAAAAAGTGAATTAAACATGAATATACAGATGCTAACAAGAGATCATACTTATTAGAGAAGAGAACTGAATACCAGACACTCACAGGAACTTGAATCAAACAAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAGCGTAAACATAAATCAAACGAAATCTCAACATAAATTCACACAAAAAGAAGAAAGGCGTAACGATCTGGGCACTGTCAAGACCACAATTGCAAGCTCACATTAAAGGATCAGTTAAGTGCAAAGTAGACCAACAAAAATCGCAGAATGCAGTGCAAGTAACCTAAATTAACAGATCTTACTCAACACTAACCTTTAAATTGCAATGGCGAGAGAAAATTGAAGTCGCCGGAAAAAAATTGCAGTTGCGAGAGAGAGAAAAAATTGCAGTCGCGAGAGAGAAGAAAAAATTGCAGTC</genome_strand>
        <mrna_strand>TATTACACAGATGTTAACAATTGAATTAAACCGGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACTAAAACTGAATTGAAGTT.......................................................................................................................................................................................................................................GTATTACATAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAG..............................................................................ATGCTAACAAGAGATCATACTTATTAGAGAAGAGAGCTGAATACCAGACACTCACAGGAACTTGAATCAAACGAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAACGTAAACATAAATCAAACGAAATCTCAACATAAATCCACACAAAAAGAAGAAAGGCGTAACGATCTGGGCACTGTCAAGACCACAATTGCAAGCTCACATTAAAGGATCAGTTAAGTGCAAAGGAAACCAACAAAAATCGCAGATTGCAATGCAAGTAACCTAAAATAACAGATCTTACTCAACACTAACCTTTAAATTGCAATGGCGAGAGAAAATTGAAGTCACC-GAAAAAAATTGCA-AT-CACGAGAGAGAAAAAATTGCAGTCGCGAGAGAGAAAAAAAATTTGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="60660" stop="68611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60960" g_stop="61029" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61030" i_stop="68143" i_length="7114">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68144" g_stop="68311" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="239" r_length="168" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60960" e_stop="61029"/>
          <exon e_start="68144" e_stop="68311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACATAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAG-ATAATGAATCTTGAGAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGACTTCAGTCCTCATGTGTGAACTTCACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTATTCGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTTAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAATAGTAACTCTAGCCAGTCTTTATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTACTTGTTTTAGCTTTCAGAATACTCTTAGTTTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATGTTATATTGAAATGTTAAGGCTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTAAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACGGAGCCAGCCACTGGGGCTGTGGCTCGAGGAAGAACAGCGGCGAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCGAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTCTCTGCACCAGCACCACAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGCCTAACTAATGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGTTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATCGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTAAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACTTCAGACCGGTCAACACTTCTCCGAGGGGCATATGATCGACTCCAAAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAGAAATTGTCCCAGACCGAGTTACAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTTTTCTGGAGGGCGTGGTGGTCGAGGTAATAGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTATAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTTGTATGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTATTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATCTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGCTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGATAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATGATTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCAGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCCTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGACTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCGGTGTCCTTCTTGGGGCACGTGGTTTCTAAGGATGGAGTGATGGTGGATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCCACTAATGTGTCGGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGCCGATTTGTCAAGGGATTCTCTTCTATTGCTTCCCAATTGACGAACTTGACTAAGCAGAATGTCCCATTTGTATGGTCGGATGAATGTGAGGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTATTGTGATGCATCCTATTCTGGTTTGGGTGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGATAATTAAAAGTGCATGAACGTAACTATCCCACTCATGATTTGAAATTGGCCGCGGTAGTGTTTGCATTAAAACAATGGAGACACTATTTATATGGGGTTAAGTGTGAGATCTATACGGATCATCGTAGCCTACAGTATGTCTTTACTCAGAAAGATTTGAACTTAAGACAGAGGAGATGGATGGAGTTACTAAAGGACTACGATATCACTATCTTGTATCATCCGGGGAAGGCGAATGTTGTAGCGGACGCTTTAAGTAGAAAGGCGGGAAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGACGCCCATTGGCTAGAGAGGTTCAAACTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTTCGGTGGAGGCAAGATCTTCCTTTCTTGACAAAATTAAGGGAAGACAGTTCGATGATGAGAAACTGCGCAGAATCCAAGATAAGGTATTGCGAGGAGAGGCTAAGGAAGCACAAATCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGAGTATGTGTACCCCGCGTCGATGGTTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTATACATCCGGGCGCAATCAAGATGTATCGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGACATTGTGGATTTTATTGCCAAATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAAAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCGGAATGGAAGTGGGAAAGAATTGCAATGGATTTTGTGGTTGGTCTTCCGAAGACAATGGGTAAGTATGACTCCATTTGGGTGATTGTTGATAGGTTAACTAAATCTGCTCATTTCATTCCGGTCAAGGTGACTTACAATGCAGAAAAGTTAGCCAAACTTTACATCTCGGAAGTGGTGCGATTGCATGGGGTTCCACTATCCATCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAAACATTGCATGCAGAATTGGGTACTAGGTTGGACCTTAGTACTGCGTTCCATCCCCAGACCGATGGTCAGTCTGAGCGAACGATTCAAGTGTTGAAGGATATGCTTCGTGCGTGTGTGATAGAGTTTGGTGGTCATTGGGATAGCTTCTTATCCTTAGCGGAGTTTTCATACAATAATAGCTATCACTCAAGCATTGATATGACCCCATTTGAAGCATTGTATGGTAGGAGATGTAGGTCTCCCATTGGTTGGTTTGATGCGTTCGAGGTCAGACCTTGGGGTACTGATCTCTTGAGGGATTCGATGGAAAAAGTGAGGTCTATTCGAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAAGGTGAACAAGTCTTGTTGAAAGTTTCAACAATGAAAGGGGTGATACGGTTTGGAAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTGCATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAATTTTGCTTGATGAGAACTTGTCTTATGAAGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCGGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTAATGTAACGACCCGTTTAGTCGTTTTGAGCAACAGACTTCAATTCTGGAAAAACTGGCAGAAGCGACGGACCCCACGACGGACCGTCAAGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAACCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGCACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTTGGTGGAAATTTGGGTCTCTAAACTCTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATGAAATAGGGTTTTGAATAAGAAAAGAGAAAAGAAAAGCGAGAGATAGATTGATCGATTGAGAGAGAGAGAGAGTCGAACGAGGAAGAAGAATATCAAAGCTTGGGAGATTGCTTGTTGATTCCAATTCTTCGGTGGAGGTAGGTTATGGTTGTTTCATGCTTTCATAAGTAAACTCTTAATAGTGATTGATATGTATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTATTGGGATTGATGATGCCTTGGTATAGAGAAGGCTTGATGGTTTACAGAATGATATTAGTGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGAGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAGAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGACTTCAGTCCTCATGTGTGAACTTCACGGTAATTGTTAATGATATAGTATTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="60661" stop="68852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60961" g_stop="61029" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61030" i_stop="68143" i_length="7114">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68144" g_stop="68552" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="481" r_length="411" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60961" e_stop="61029"/>
          <exon e_start="68144" e_stop="68552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACATAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAG-ATAATGAATCTTGAGAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGACTTCAGTCCTCATGTGTGAACTTCACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTATTCGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTTAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAATAGTAACTCTAGCCAGTCTTTATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTACTTGTTTTAGCTTTCAGAATACTCTTAGTTTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATGTTATATTGAAATGTTAAGGCTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGCCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTAAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACGGAGCCAGCCACTGGGGCTGTGGCTCGAGGAAGAACAGCGGCGAGGGGCCGTGGTAGAGGTCGTGGGAGGACGTCCTCTAGGGGAAGAGGACGAGCACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCGAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTCTCTGCACCAGCACCACAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGCCTAACTAATGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCTCTAGTTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGGATCGGAAAAGGGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGTGAAGGGGTTGAGGTAAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACTTCAGACCGGTCAACACTTCTCCGAGGGGCATATGATCGACTCCAAAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAGAAATTGTCCCAGACCGAGTTACAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTTTTCTGGAGGGCGTGGTGGTCGAGGTAATAGTGGTCACCAAAACGGCAGAGGTAATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTATAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTTGTATGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTATTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATCTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGCTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACAGATAACTAAACAAGGTAACCATAAAGAACAAGTATCCTCTTCCCCGCATTGATGATTTGTTCGATCAGTTACAAGGTGCTTGTGTCTTCTCTAAGATTGACTTGAGATCCAGTTATCATCAATTGAAAATACGGGCAACGGATGTGCCAAAGACTGCTTTTCGAACGAGGTATGGGCATTACGAATTTGTAGTGATGTCCTTTGGTCTTACGAATGCCCCTGCTGCGTTCATGAGCTTGATGAACGGGATTTTTAAGCCATATTTGGACTCTTCGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACATGAAGAGCATTTGAGAATGGTATTGGAAATGTTGAGGGAGAAAAAGCTTTATGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCGGTGTCCTTCTTGGGGCACGTGGTTTCTAAGGATGGAGTGATGGTGGATCCTTCTAAGATTGAGACAGTGAAGAATTGGGTAAGACCCACTAATGTGTCGGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGCCGATTTGTCAAGGGATTCTCTTCTATTGCTTCCCAATTGACGAACTTGACTAAGCAGAATGTCCCATTTGTATGGTCGGATGAATGTGAGGAAAGCTTTCAGAAGCTCAAGACTTTGTTGACTACCGCACCTATCCTTACCTTGCCAGTAGAGGGTAAGAACTTCATTGTTTATTGTGATGCATCCTATTCTGGTTTGGGTGCAGTACTAATGCAAGAGAAGAGTGTGATTGCTTATGCTTCAAGATAATTAAAAGTGCATGAACGTAACTATCCCACTCATGATTTGAAATTGGCCGCGGTAGTGTTTGCATTAAAACAATGGAGACACTATTTATATGGGGTTAAGTGTGAGATCTATACGGATCATCGTAGCCTACAGTATGTCTTTACTCAGAAAGATTTGAACTTAAGACAGAGGAGATGGATGGAGTTACTAAAGGACTACGATATCACTATCTTGTATCATCCGGGGAAGGCGAATGTTGTAGCGGACGCTTTAAGTAGAAAGGCGGGAAGCATGGGAAGTCTAGCTCACTTGCAAGCTTCTAGACGCCCATTGGCTAGAGAGGTTCAAACTCTAGCTAATGACTTGATGAGATTAGAAGTAAATGAGAAGGGAGGATTGTTGGCTTCGGTGGAGGCAAGATCTTCCTTTCTTGACAAAATTAAGGGAAGACAGTTCGATGATGAGAAACTGCGCAGAATCCAAGATAAGGTATTGCGAGGAGAGGCTAAGGAAGCACAAATCGATGAGGAAGGTGTTTTGAGAATCAAGGGAAGAGTATGTGTACCCCGCGTCGATGGTTTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAGGTATTCTATACATCCGGGCGCAATCAAGATGTATCGTGACCTAAAGCAACACTTTTGGTGGAGTAGAATGAAGCGTGACATTGTGGATTTTATTGCCAAATGTCCAAACTGTCAACAAGTAAAGTATGAACACCAAAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCGGAATGGAAGTGGGAAAGAATTGCAATGGATTTTGTGGTTGGTCTTCCGAAGACAATGGGTAAGTATGACTCCATTTGGGTGATTGTTGATAGGTTAACTAAATCTGCTCATTTCATTCCGGTCAAGGTGACTTACAATGCAGAAAAGTTAGCCAAACTTTACATCTCGGAAGTGGTGCGATTGCATGGGGTTCCACTATCCATCATATCAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAAACATTGCATGCAGAATTGGGTACTAGGTTGGACCTTAGTACTGCGTTCCATCCCCAGACCGATGGTCAGTCTGAGCGAACGATTCAAGTGTTGAAGGATATGCTTCGTGCGTGTGTGATAGAGTTTGGTGGTCATTGGGATAGCTTCTTATCCTTAGCGGAGTTTTCATACAATAATAGCTATCACTCAAGCATTGATATGACCCCATTTGAAGCATTGTATGGTAGGAGATGTAGGTCTCCCATTGGTTGGTTTGATGCGTTCGAGGTCAGACCTTGGGGTACTGATCTCTTGAGGGATTCGATGGAAAAAGTGAGGTCTATTCGAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAAGGTGAACAAGTCTTGTTGAAAGTTTCAACAATGAAAGGGGTGATACGGTTTGGAAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGAGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTGCATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAATTTTGCTTGATGAGAACTTGTCTTATGAAGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAGGTGCAATGGAAGAATCGACCGGTTGAAGAAGCCACTTGGGAGAAGGAGGCGGATATGCGAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTAATGTAACGACCCGTTTAGTCGTTTTGAGCAACAGACTTCAATTCTGGAAAAACTGGCAGAAGCGACGGACCCCACGACGGACCGTCAAGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAACCTGAAATTGGGTACTAAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGCACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTTGGTGGAAATTTGGGTCTCTAAACTCTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATGAAATAGGGTTTTGAATAAGAAAAGAGAAAAGAAAAGCGAGAGATAGATTGATCGATTGAGAGAGAGAGAGAGTCGAACGAGGAAGAAGAATATCAAAGCTTGGGAGATTGCTTGTTGATTCCAATTCTTCGGTGGAGGTAGGTTATGGTTGTTTCATGCTTTCATAAGTAAACTCTTAATAGTGATTGATATGTATTGTAAACCCTACTATATGCTTAATGGTATGTTTGCATGAATATGATTATGTGATTGTGATAAGATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTATTGGGATTGATGATGCCTTGGTATAGAGAAGGCTTGATGGTTTACAGAATGATATTAGTGGATCGGAGTGTCACGTACCGACACATGTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGAGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAGAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGACTTCAGTCCTCATGTGTGAACTTCACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTA-TTCG-GTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTTAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAATAGTAACTCTAGCCAGTCTTTATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="61400" stop="62285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61700" g_stop="61985" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61700" e_stop="61985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTAAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACGGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="62724" stop="61692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62424" g_stop="61992" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62424" e_stop="61992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCATTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGTGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTCGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTCGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="61759" stop="62912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62059" g_stop="62612" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62059" e_stop="62612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCGAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTCTCTGCACCAGCACCACAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGCCTAACTAATGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="63082" stop="61763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62782" g_stop="62063" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62782" e_stop="62063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCATTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGTGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTCGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="63079" stop="61816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62779" g_stop="62116" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62779" e_stop="62116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCATTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGTGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTT-CCTCATTTCGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTT-GCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="63719" stop="62330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63419" g_stop="62630" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63419" e_stop="62630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTTACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="63643" stop="62346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63343" g_stop="62646" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63343" e_stop="62646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTTACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="+" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>tgtagtctatgcacattcaaaaactgccgatctttacaacaaaaccggagcaccccaaggagatgcacttggtctaatgaagcctttgttcaataactcttgaagttgtgcctttaactctcttaactctgcgggagccattctataagggggtataaaaatggggcgtgtgcccggttcgagatcaatacagaagtcaatatccctatccggtggcataccaggatgatctgcagggaacacatccataaactcacgaactactgaaactgagtcaatcgaaggtacttgggtagtgttatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatacgcaccggattggaagtgtagtcaccctcctacactaacagatctgtcccaggcttggctaacgtcacggttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcgaagtcaaccatttcttgcaaggattttgccgtagccgctacctgtaacgctgaaatccgcaactctgacctcaaccctttcacaaaacgacgaatcctctcttgtggactgaaacaaagttgagtggcatatctggatagtgcacgaaacttagcctcatatgcattgacctacatcctaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="64394" stop="62386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64130" g_stop="63603" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63602" i_stop="62859" i_length="744">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62858" g_stop="62686" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="694" r_length="173" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64130" e_stop="63603"/>
          <exon e_start="62858" e_stop="62686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACAGATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTAATAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCATACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTATAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTTACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGC</genome_strand>
        <mrna_strand>TGTAGTCTATGCACATTCAAAAACT-GC--CGATC-T-T-TACAA-CAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGATGATCTGCAGGGAACACATCCATAAACTCACGAACTACTGAAACTGAGTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAAGGATTTTGCCGTAGCCGCTACCTGTAACGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCTCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCTACATCCTACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="63799" stop="62436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63499" g_stop="62736" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63499" e_stop="62736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTTACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGA-GGACTGAAACAGAGTTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="63717" stop="62584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63417" g_stop="62884" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63417" e_stop="62884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="63803" stop="62645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63503" g_stop="62945" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63503" e_stop="62945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="64413" stop="63052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64113" g_stop="63352" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64113" e_stop="63352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACAGATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTAATAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCATACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTATAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="64010" stop="63084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63710" g_stop="63380" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63710" e_stop="63380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTATAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="64413" stop="63153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64113" g_stop="63453" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64113" e_stop="63453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACAGATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTAATAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCATACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTATAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="64482" stop="63224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64182" g_stop="63524" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64182" e_stop="63524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACAGATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTAATAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCATACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTATAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="64930" stop="63653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64630" g_stop="63952" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64630" e_stop="63952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAG-TCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="65001" stop="63690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64701" g_stop="63990" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64701" e_stop="63990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCCGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAG-TCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="65001" stop="63807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64701" g_stop="64107" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64701" e_stop="64107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCCGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAG-TCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="65001" stop="63877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64701" g_stop="64177" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64701" e_stop="64177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCCGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAG-TCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="64930" stop="63973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64630" g_stop="64273" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64630" e_stop="64273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAG-TCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="-" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="66482" stop="65705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66182" g_stop="66006" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66182" e_stop="66006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGTCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGATAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTTCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583123" ref_strand="+" ref_description="SGN-E583123 [8756]">
      <seq>tttacgtacacttttttctttctcgctctctgagagagctttcaattgttcgcaatcggtaaatcctttctcttcgtcatgggttgaaccatgaatcaatctctctgatctctctctaacagcatcgccacttccttctctctctaggattttgaggtttgatttcataaaatttctagttagttaattgtaggggtttttccagttctctgtacggtgaagcgtgaagttttcttctggttttcaagctgagttcttctaattcgttggcttctgcaattgcttttctattaggagcagaactataaattgcttacaggcaccttgacgtatgctttgtgttgagacttgaatcaccagcatggatctgaatgccttgccacagccagaggatgacgacgagatttttggacaacaattagaacgatgaaccacaagaacctattttacatagtgatgagcgtgcagattatgtcacgagtgctgtacagatttcacgtcgcgagcgggaggaaaggattcaaaaacttaaaagacacatccagatgatagaccaggatatccatctcaaaccacgaatgcgggatgagatctttcagcaccaaagagacagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="69020" stop="75529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69320" g_stop="69621" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69622" i_stop="74105" i_length="4484">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74106" g_stop="74313" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="503" r_length="209" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74314" i_stop="75118" i_length="805">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75119" g_stop="75229" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="616" r_length="113" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E583123" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69320" e_stop="69621"/>
          <exon e_start="74106" e_stop="74313"/>
          <exon e_start="75119" e_stop="75229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACGTACTC-TCTCTCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAGGTATGAATTCTTCTTCTTCTTCTTCTTATTATTATTAATAGTTTAATTTGTATTTTGATATGCAATTCGAATTCATTTTTCTTCTTCTTCTTCTTCATTTTGGGTGACATTTCTTTAAAAGGATTAATTTAGAGTTTTGGAGCTACTAATCATAGTTATTAGGGTTTAATTGTTATGTACCTTGATGTTGGATGCTTAGAATTACTGCGGAATTGATTTTGACTTTTATTTTTTCCCTTTCGAAAGTTATAATTTTTAAAAGTGACTGAGACTGATGCTTGGTGATGATATATTTTTTTTATTTGCATTGGCTATATATGTGTATTTGGGGAACACTTGCTGTTTGATTTTCTTTTCTTTTTTTGTTTGGGTTGGGTCAATTCAAATTTTTATGTGTTATTTTCTGTTGCTTTTTCCAGTTTTTTAAAAGCATGGTATCACACACTAGGGTTCATTTGATTTTGTTTCTTGCGCTTTTCTGCTTAGATTAATTGTACGTCTTTTTTACAATTTTAGTTTTTGCACTAATTGAGACTGAGCTTTTTTTTTTTTTTTGCTTCATTGGTATGATTTCTTTGGGGAGCATGTCTTGTTTGTTGGTTGCTGTTCAAGTGTGTTAATTGTCGGGGTTTAAATTGGGCTTTTATGTGGTTTCGAAATGGAATTGGTTTGTTACACTTGTTGGTTTCCATTGATGTCAGTGTACAGGTTTGTTCTTTGACAACCTAATGACATAGTTCACATGTCATTTATTAATTGAAGTATGGTGTTTTATGTTTGGTGGTCAGTCTTGTTGTTGGCAGCTTTCTCCTAGGGGAGTTGGTACTATAAGCGAATGTGCATAGTTAAGCTGGAATTGTTAAACATGGAGAATCCATTAAGAAACTATGTTTTTGTCTCAATTTTGTTTGGCAGTATCTGGATTGACACAGAGTTTAGGCTAAAAGTGCCTTCCTTCCATACCAAAATCTTTGTTTTTCTTATCTAGCGGGACGTACAACACGGCATGTCCTTGGTGAAATAGGAATGTAAAAATTAATTAGATGCCATCATCTTGAGATAGAGACTATAAGATGAGTTCCAATCAAAATTGTGACAGAGGGAGTATTAAATATTGGTGTGAAGAGTTAAATATTTAGCCAATTAGATTTAATTTGTGGTGATTTGGTCGTTGTTCTTTGATAATTTTCATGTCATAGGAGGTTATTCCTTCTATGCCATAATGCAACTGTCCTTGAAGTAGCATGTTATCATATCTCTTATCATCTGATCCTTTGAATGTAATGTGATACCCTTCCCTGTCGTTCGTTCCTGAGCACATACATGGGAGTTAGCTCTATACATTAGGAGTCGTTTGGTAGTTGGTTAAAGTTATGTTGGTATTAGTAATACATGGACTAATTATGAGGGAATCCATGTATATCTTATGCAAAAATTAGTTATGCAAGGCTTATTTATTCATGTATTACTTATTTCATCTTCTGCATAAAATAATACATAGATTCCCTCATAACTTATACATGTATTAGTTATGTGAATCTCTAAGTTTCTAACCTAAAACTAGCTACAACGTATCAAGCTGACCCCTAAGGCTGTCCACTGGCACTTATGTAGTATGTTCAACTAACCTACGTTGTGAACAACTGTCTCCACAGTCTGAATTTGCCTGTAGTAGTACTCTTTTGTCCACATTGTTCAACTCCTTTGCCCGGGGGTCCAAACTCCAAAGAATCCTTTGGCCCAGCAGGTTCTTTGATACCCTGCATCACCTGTGATGTTTTCAAATCTTGCTTTCTGCTCGACCAATATCGAAAAAAATGATGCTTGTACCGATCTCCTTCTATGGGTACTTCACTCAGACATTTCCAACCATCTCCCCCAATTTTGATTCTTGCTCACTTGAGATGTTATTGGGTTCAGTTTCTTCCTCAGTAACTACTTATCCACCTCATATATTCTCAATTTCAATGTAAACCTTTTGCGACCAGAGGTGTAATGAGATCCTGCTGCTCACATTAATCTTCTGGGAAGCTGGTAGACAACCTGTCGTGGGGCTCCAGCAGAGCAAGCTAATATTTCTTGTCCTCCATCTCTACTCCTTCCACAGAATTTTTTATGCCATTTACCTGTTTGGGAACTCAAACAAGAACATATTCCTGTCCATATCATAAATATTGTCCCCAAAGGCAGCTGTCCAAGAGATGGAAGTTCATTTCTTTATTCCGTTTTGGTGATGTGATTTTCTGACTCCTCGTGAAATTTTCTGATGCCACACTTGTTAAGAAAGCCCTTTTTTCCTTTCCTCCAGATGCCTTTGTATGTCTATGTAATACAGATACAACAACATACCCAGTGTCATGTAATCCCACAACCAGGGTCTGAGGAACCTATCTAATACATATGTCTCCACTATTTGTAGAGACTAGACTCCCTGAGAATGTTTGATTGTCATTTAATCTCGCACGAAGTTTTAGCAAAAGTGTAACCTTTGATGCTGTGTGGCTCTGTAATTTTCAGTTGGTTGTGGCATTTAATGAACCTTTCAATGTTGAAAGGCTATTTCATTCCTCCCCCATTTAATATGATCTCAGGAATTATTATTACTGGCTTACCTTTCCCCTGAAGCGAAAGGATGCTCATGTGCCTGCCATATACATTAAACTTCCTAGTGCATAGAAATTCTGATAGTTTATGCTTGGTTTCCATCTTCTGATTGAATTTGTCGTCTCTTTCGATGCCTCTTTGAGAATGTTGCAGATCCAAGACACGTGCTAAGAGTCGATTGTCTCATCATGTTACTCCTTCTTTCTACCGAATCATACTAGCTCTCCTTGCTATCTGACTACCTGGTAATATCAAAGGATTTGAATCCGGCATTGAAGTATATCCTATTGTCTTCCAAGCTGGAATAACTCTGGACTTAAAAGAAAGAAAGAAAGAACGAGAGAGAGAGAGAAAATTCCATACACAAGGTGAAATGGAATTTTATACTATATCTACTTTTTTGGTGTAAACAGTTGTGTATAGTAGACACAGATCAGATTGTAGATTTGATAAGAAGTTTGTAATTGACACTTTTTGGTGGTGGCCAGCATGCCCTTAATGTTGAAGAATACAACCTTACCAGTTTTTTTTTAAAAAAAAAAGAAACAGAGAAAGAGAATGGAGATCTTGTCAGAGATGACAGGTTGTGAAATCTTAAAGAAGAAGAAAGAGAAAGAAGACTTTGACAGCAATCACAGTAAACTGAGCTACCGAGCTGTTCAAATTCCGGAAAGAGGCTGTTCTTGGGAAGTAGGATAGAGAATACCTCAGTAGACGCGCCTGGGAGCATTTTTTTCCCCATGCAAGTCTGTACTATTCTGCCTATTTTGTGACTGTTCTCCACTTAGTGCTTGTAGGGTTGATTCATCCGGTCCAGTTTTTCTAATGAACTTATATTTAGGATCACAAGTGAACAAAAATTCTTTTAGAAGTACTTCTTCAATCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCCCTTAGGTTCATTTGATCCCTTTCTTCCAATGGAAAACTTTTCTTTTGTGGAATAGTCATAAATTTGCAGTCCTTCATATAATTGTATCCTGTCATTCAACAAACTCTTCATTCTTTCCCTCTGATCATATGATCAAAATTCTTTCTAGTTCAGATGACAAATATATTTAGCTTTCTAGTATTTCAAGTTCCCTTTTCCTTTTTTTTACGTGCCTATGCATCAATATCTAAAGCAAACGAAGTTAGCTTGTAATTGCGAACTCTAGACGGGAGCATAAAAGTAAAACCATAATCGTGTATAATGTACATAATGTCTCAAAGGGTTAGATTCATGTACACTTCCTGCATGTTCGAGGTTCGCTCATTTCCTCAACTTTTGAAATTACACTTACACTAACTCTGTCTTGGATGTTTTCTGCTAAAGTAGAGATAGTTACCCGTTATTTGCCTTGTTGTTTCATGACTATGGTCGTTCATCAACAATTATTCTCTCTCTCCTTCAAAATTGATGATTTTGTGTACTGGTGACACCAAATGTAACTCAAATGATCACACTCTGGAGAGCACTATGAGGGTTTTGGGTTGATATGTTTCTTTGTTCTCTAGTATCCGGCCATAAAAAGGGTTGTATTCTATCGTTTGAGTCAACTATTGTTCTGTTTCATGTCATCTAATCCCTGTGTTGTTTCCTTTTGTGTTAGGTTTTGTATTTCTTTAATTTCCAAATTTATGATGTTTGTTTGGTTCACTAAGTTTTAATATTTGGATGATGCATTGAGATTTGAATCAATTCAGACTTTTCAGTAGTCATAAAAGATTATTCGCTTATTTTTTATCTGAACAATTCGATATCCTCTCTTGTTTGTTGCAGGAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAA-GATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTATTTTAAAAAAAAGTATCCTGAGAGTTGAAATCCCCTAATTGCTCAAGGAGCTTACAACATGTAATAAATCTAAAGAGTTATTTAAGCAAAATGGTTTCTCCAAGAACACGATGAACTTATTTTACTTTCCTCCTGTAATTGCTTCCCTCCCCCCTATTTTTTTTTGCTTCTCCCCGTTTTAGCCCGCAGGCAGTTTGGGCTCATCAAATGGAAAAGGGGAAGAGTGGTTATTGAACAGTGGAAAATTCAGCATTGTTGTTGGTAATCTGGTTATCTCCAAGTCAGCTATCTCAATGATCTAATTTGAATTATCTTTGGTTCCACACTTTGTACCTCCTTTTACCAATCTCGTCTCCGTCAAATGGGGGAGAAAGTAAAGAAATAGAACTTGCTTCTTTGATAGTGGAAGGATAGGAACATGGGAGTAAGTGCCCATAGATTGGGGTATGTTCTTGTGAATCTTATTATTGTGGAGACTTAATTTTCCTTTTTAAAATTTTTATTTTTCTAGTTTTCTATCTCTTACCTGTCAAAAAATTATTTTCTAGTTTGCATGCCCTCTTTCTAAATGCTGTTTGTTTTAGGAGCGGGAGGAAAGGATTCAAAAACTTAAAAGACAACATCCAGATGATAGACCAGCATATCCATCTC-AACCACGAATGCAGGATGAGATCTTTCAG--CCAAAGAGACAGAAA</genome_strand>
        <mrna_strand>TTTACGTACACTTTTTTCTTTCTCGCTCTCTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCTTCGTCATGGGTTGAACCATGAATCAATCTCTCTGA----TC--TCTC--TCTAACAGCATCGCCACTTCCTTCTCTCTCTAGGATTTTGAGGTTTGATTTCATAAAATTTCTAGTTAGTTAATTGTAGGGG-TTTTTCCAGTTCTCTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCAAGCTGAGTTCTTCTAATTCGTTGGCTTCTGCAATTGCTTTTCTATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGAACTATAAATTGCTTACAGGCACCTTGACGTATGCTTTGTGTTGAGACTTGAATCACCAGCATGGATCTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAACGATGAACCACAAGAACCTATTTTACATAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTACAGATTTCACGTCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGGGAGGAAAGGATTCAAAAACTTAAAAGAC-ACATCCAGATGATAGACCAGGATATCCATCTCAAACCACGAATGCGGGATGAGATCTTTCAGCACCAAAGAGACAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545671" ref_strand="+" ref_description="SGN-E545671 [TUS-68-K7](-)">
      <seq>ctctctttctttttgtgagagagctttcaattgttcgcaatcggtaaatcctttctcgtcgtcatggattgaaccataaatcaatctctctgatctctctttctctctctaacagcatggccacttccttctctctctaggattttgtggtttgatttcataaaatttctagttaggtaattgtaggggttttttccagttctttgtacggtgaagcgtgaagttttcttctggttttcgagctgagttcctccaagtcgttggcttctgcaatttcttttacgttaggagcagaactataaattgcttgcaggaaccttgacatatgctttctgttgagacttgaatcaccagcatggatttgaatgccttgccacagccagaggatgacgacgagatttttggacaacaattagaagatgaaccacaagaacctattttacgtagtgatgagcgtgcagattatgtcacgagtgctgtagagatttcacgtcgcgtatgtttctgcttatactgctcgctgtatcaactattgaactgtactactacttgaacttgctcgtttattggatatttctttttggctccttgtttgatacatgtctcttttatcttggttgtttctttgctgcttgtcatcggcagagcaataactaatagaaagctttgtaaaataaaattttgttaaatcaaaatccagaggatgtgattgatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="69034" stop="74834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69334" g_stop="69621" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69622" i_stop="74105" i_length="4484">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74106" g_stop="74543" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="726" r_length="438" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E545671" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69334" e_stop="69621"/>
          <exon e_start="74106" e_stop="74543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAGGTATGAATTCTTCTTCTTCTTCTTCTTATTATTATTAATAGTTTAATTTGTATTTTGATATGCAATTCGAATTCATTTTTCTTCTTCTTCTTCTTCATTTTGGGTGACATTTCTTTAAAAGGATTAATTTAGAGTTTTGGAGCTACTAATCATAGTTATTAGGGTTTAATTGTTATGTACCTTGATGTTGGATGCTTAGAATTACTGCGGAATTGATTTTGACTTTTATTTTTTCCCTTTCGAAAGTTATAATTTTTAAAAGTGACTGAGACTGATGCTTGGTGATGATATATTTTTTTTATTTGCATTGGCTATATATGTGTATTTGGGGAACACTTGCTGTTTGATTTTCTTTTCTTTTTTTGTTTGGGTTGGGTCAATTCAAATTTTTATGTGTTATTTTCTGTTGCTTTTTCCAGTTTTTTAAAAGCATGGTATCACACACTAGGGTTCATTTGATTTTGTTTCTTGCGCTTTTCTGCTTAGATTAATTGTACGTCTTTTTTACAATTTTAGTTTTTGCACTAATTGAGACTGAGCTTTTTTTTTTTTTTTGCTTCATTGGTATGATTTCTTTGGGGAGCATGTCTTGTTTGTTGGTTGCTGTTCAAGTGTGTTAATTGTCGGGGTTTAAATTGGGCTTTTATGTGGTTTCGAAATGGAATTGGTTTGTTACACTTGTTGGTTTCCATTGATGTCAGTGTACAGGTTTGTTCTTTGACAACCTAATGACATAGTTCACATGTCATTTATTAATTGAAGTATGGTGTTTTATGTTTGGTGGTCAGTCTTGTTGTTGGCAGCTTTCTCCTAGGGGAGTTGGTACTATAAGCGAATGTGCATAGTTAAGCTGGAATTGTTAAACATGGAGAATCCATTAAGAAACTATGTTTTTGTCTCAATTTTGTTTGGCAGTATCTGGATTGACACAGAGTTTAGGCTAAAAGTGCCTTCCTTCCATACCAAAATCTTTGTTTTTCTTATCTAGCGGGACGTACAACACGGCATGTCCTTGGTGAAATAGGAATGTAAAAATTAATTAGATGCCATCATCTTGAGATAGAGACTATAAGATGAGTTCCAATCAAAATTGTGACAGAGGGAGTATTAAATATTGGTGTGAAGAGTTAAATATTTAGCCAATTAGATTTAATTTGTGGTGATTTGGTCGTTGTTCTTTGATAATTTTCATGTCATAGGAGGTTATTCCTTCTATGCCATAATGCAACTGTCCTTGAAGTAGCATGTTATCATATCTCTTATCATCTGATCCTTTGAATGTAATGTGATACCCTTCCCTGTCGTTCGTTCCTGAGCACATACATGGGAGTTAGCTCTATACATTAGGAGTCGTTTGGTAGTTGGTTAAAGTTATGTTGGTATTAGTAATACATGGACTAATTATGAGGGAATCCATGTATATCTTATGCAAAAATTAGTTATGCAAGGCTTATTTATTCATGTATTACTTATTTCATCTTCTGCATAAAATAATACATAGATTCCCTCATAACTTATACATGTATTAGTTATGTGAATCTCTAAGTTTCTAACCTAAAACTAGCTACAACGTATCAAGCTGACCCCTAAGGCTGTCCACTGGCACTTATGTAGTATGTTCAACTAACCTACGTTGTGAACAACTGTCTCCACAGTCTGAATTTGCCTGTAGTAGTACTCTTTTGTCCACATTGTTCAACTCCTTTGCCCGGGGGTCCAAACTCCAAAGAATCCTTTGGCCCAGCAGGTTCTTTGATACCCTGCATCACCTGTGATGTTTTCAAATCTTGCTTTCTGCTCGACCAATATCGAAAAAAATGATGCTTGTACCGATCTCCTTCTATGGGTACTTCACTCAGACATTTCCAACCATCTCCCCCAATTTTGATTCTTGCTCACTTGAGATGTTATTGGGTTCAGTTTCTTCCTCAGTAACTACTTATCCACCTCATATATTCTCAATTTCAATGTAAACCTTTTGCGACCAGAGGTGTAATGAGATCCTGCTGCTCACATTAATCTTCTGGGAAGCTGGTAGACAACCTGTCGTGGGGCTCCAGCAGAGCAAGCTAATATTTCTTGTCCTCCATCTCTACTCCTTCCACAGAATTTTTTATGCCATTTACCTGTTTGGGAACTCAAACAAGAACATATTCCTGTCCATATCATAAATATTGTCCCCAAAGGCAGCTGTCCAAGAGATGGAAGTTCATTTCTTTATTCCGTTTTGGTGATGTGATTTTCTGACTCCTCGTGAAATTTTCTGATGCCACACTTGTTAAGAAAGCCCTTTTTTCCTTTCCTCCAGATGCCTTTGTATGTCTATGTAATACAGATACAACAACATACCCAGTGTCATGTAATCCCACAACCAGGGTCTGAGGAACCTATCTAATACATATGTCTCCACTATTTGTAGAGACTAGACTCCCTGAGAATGTTTGATTGTCATTTAATCTCGCACGAAGTTTTAGCAAAAGTGTAACCTTTGATGCTGTGTGGCTCTGTAATTTTCAGTTGGTTGTGGCATTTAATGAACCTTTCAATGTTGAAAGGCTATTTCATTCCTCCCCCATTTAATATGATCTCAGGAATTATTATTACTGGCTTACCTTTCCCCTGAAGCGAAAGGATGCTCATGTGCCTGCCATATACATTAAACTTCCTAGTGCATAGAAATTCTGATAGTTTATGCTTGGTTTCCATCTTCTGATTGAATTTGTCGTCTCTTTCGATGCCTCTTTGAGAATGTTGCAGATCCAAGACACGTGCTAAGAGTCGATTGTCTCATCATGTTACTCCTTCTTTCTACCGAATCATACTAGCTCTCCTTGCTATCTGACTACCTGGTAATATCAAAGGATTTGAATCCGGCATTGAAGTATATCCTATTGTCTTCCAAGCTGGAATAACTCTGGACTTAAAAGAAAGAAAGAAAGAACGAGAGAGAGAGAGAAAATTCCATACACAAGGTGAAATGGAATTTTATACTATATCTACTTTTTTGGTGTAAACAGTTGTGTATAGTAGACACAGATCAGATTGTAGATTTGATAAGAAGTTTGTAATTGACACTTTTTGGTGGTGGCCAGCATGCCCTTAATGTTGAAGAATACAACCTTACCAGTTTTTTTTTAAAAAAAAAAGAAACAGAGAAAGAGAATGGAGATCTTGTCAGAGATGACAGGTTGTGAAATCTTAAAGAAGAAGAAAGAGAAAGAAGACTTTGACAGCAATCACAGTAAACTGAGCTACCGAGCTGTTCAAATTCCGGAAAGAGGCTGTTCTTGGGAAGTAGGATAGAGAATACCTCAGTAGACGCGCCTGGGAGCATTTTTTTCCCCATGCAAGTCTGTACTATTCTGCCTATTTTGTGACTGTTCTCCACTTAGTGCTTGTAGGGTTGATTCATCCGGTCCAGTTTTTCTAATGAACTTATATTTAGGATCACAAGTGAACAAAAATTCTTTTAGAAGTACTTCTTCAATCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCCCTTAGGTTCATTTGATCCCTTTCTTCCAATGGAAAACTTTTCTTTTGTGGAATAGTCATAAATTTGCAGTCCTTCATATAATTGTATCCTGTCATTCAACAAACTCTTCATTCTTTCCCTCTGATCATATGATCAAAATTCTTTCTAGTTCAGATGACAAATATATTTAGCTTTCTAGTATTTCAAGTTCCCTTTTCCTTTTTTTTACGTGCCTATGCATCAATATCTAAAGCAAACGAAGTTAGCTTGTAATTGCGAACTCTAGACGGGAGCATAAAAGTAAAACCATAATCGTGTATAATGTACATAATGTCTCAAAGGGTTAGATTCATGTACACTTCCTGCATGTTCGAGGTTCGCTCATTTCCTCAACTTTTGAAATTACACTTACACTAACTCTGTCTTGGATGTTTTCTGCTAAAGTAGAGATAGTTACCCGTTATTTGCCTTGTTGTTTCATGACTATGGTCGTTCATCAACAATTATTCTCTCTCTCCTTCAAAATTGATGATTTTGTGTACTGGTGACACCAAATGTAACTCAAATGATCACACTCTGGAGAGCACTATGAGGGTTTTGGGTTGATATGTTTCTTTGTTCTCTAGTATCCGGCCATAAAAAGGGTTGTATTCTATCGTTTGAGTCAACTATTGTTCTGTTTCATGTCATCTAATCCCTGTGTTGTTTCCTTTTGTGTTAGGTTTTGTATTTCTTTAATTTCCAAATTTATGATGTTTGTTTGGTTCACTAAGTTTTAATATTTGGATGATGCATTGAGATTTGAATCAATTCAGACTTTTCAGTAGTCATAAAAGATTATTCGCTTATTTTTTATCTGAACAATTCGATATCCTCTCTTGTTTGTTGCAGGAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTATTTTAAAAA</genome_strand>
        <mrna_strand>CTCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545672" ref_strand="+" ref_description="SGN-E545672 [TUS-68-K7]">
      <seq>ctctctttctttttgtgagagagctttcaattgttcgcaatcggtaaatcctttctcgtcgtcatggattgaaccataaatcaatctctctgatctctctttctctctctaacagcatggccacttccttctctctctaggattttgtggtttgatttcataaaatttctagttaggtaattgtaggggttttttccagttctttgtacggtgaagcgtgaagttttcttctggttttcgagctgagttcctccaagtcgttggcttctgcaatttcttttacgttaggagcagaactataaattgcttgcaggaaccttgacatatgctttctgttgagacttgaatcaccagcatggatttgaatgccttgccacagccagaggatgacgacgagatttttggacaacaattagaagatgaaccacaagaacctattttacgtagtgatgagcgtgcagattatgtcacgagtgctgtagagatttcacgtcgcgtatgtttctgcttatactgctcgctgtatcaactattgaactgtactactacttgaacttgctcgtttattggatatttctttttggctccttgtttgatacatgtctcttttatcttggttgtttctttgctgcttgtcatcggcagagcaataactaatagaaagctttgtaaaataaaattttgttaaatcaaaatccagaagatgtgattgatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="69034" stop="74834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69334" g_stop="69621" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69622" i_stop="74105" i_length="4484">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74106" g_stop="74542" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="725" r_length="437" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E545672" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69334" e_stop="69621"/>
          <exon e_start="74106" e_stop="74542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAGGTATGAATTCTTCTTCTTCTTCTTCTTATTATTATTAATAGTTTAATTTGTATTTTGATATGCAATTCGAATTCATTTTTCTTCTTCTTCTTCTTCATTTTGGGTGACATTTCTTTAAAAGGATTAATTTAGAGTTTTGGAGCTACTAATCATAGTTATTAGGGTTTAATTGTTATGTACCTTGATGTTGGATGCTTAGAATTACTGCGGAATTGATTTTGACTTTTATTTTTTCCCTTTCGAAAGTTATAATTTTTAAAAGTGACTGAGACTGATGCTTGGTGATGATATATTTTTTTTATTTGCATTGGCTATATATGTGTATTTGGGGAACACTTGCTGTTTGATTTTCTTTTCTTTTTTTGTTTGGGTTGGGTCAATTCAAATTTTTATGTGTTATTTTCTGTTGCTTTTTCCAGTTTTTTAAAAGCATGGTATCACACACTAGGGTTCATTTGATTTTGTTTCTTGCGCTTTTCTGCTTAGATTAATTGTACGTCTTTTTTACAATTTTAGTTTTTGCACTAATTGAGACTGAGCTTTTTTTTTTTTTTTGCTTCATTGGTATGATTTCTTTGGGGAGCATGTCTTGTTTGTTGGTTGCTGTTCAAGTGTGTTAATTGTCGGGGTTTAAATTGGGCTTTTATGTGGTTTCGAAATGGAATTGGTTTGTTACACTTGTTGGTTTCCATTGATGTCAGTGTACAGGTTTGTTCTTTGACAACCTAATGACATAGTTCACATGTCATTTATTAATTGAAGTATGGTGTTTTATGTTTGGTGGTCAGTCTTGTTGTTGGCAGCTTTCTCCTAGGGGAGTTGGTACTATAAGCGAATGTGCATAGTTAAGCTGGAATTGTTAAACATGGAGAATCCATTAAGAAACTATGTTTTTGTCTCAATTTTGTTTGGCAGTATCTGGATTGACACAGAGTTTAGGCTAAAAGTGCCTTCCTTCCATACCAAAATCTTTGTTTTTCTTATCTAGCGGGACGTACAACACGGCATGTCCTTGGTGAAATAGGAATGTAAAAATTAATTAGATGCCATCATCTTGAGATAGAGACTATAAGATGAGTTCCAATCAAAATTGTGACAGAGGGAGTATTAAATATTGGTGTGAAGAGTTAAATATTTAGCCAATTAGATTTAATTTGTGGTGATTTGGTCGTTGTTCTTTGATAATTTTCATGTCATAGGAGGTTATTCCTTCTATGCCATAATGCAACTGTCCTTGAAGTAGCATGTTATCATATCTCTTATCATCTGATCCTTTGAATGTAATGTGATACCCTTCCCTGTCGTTCGTTCCTGAGCACATACATGGGAGTTAGCTCTATACATTAGGAGTCGTTTGGTAGTTGGTTAAAGTTATGTTGGTATTAGTAATACATGGACTAATTATGAGGGAATCCATGTATATCTTATGCAAAAATTAGTTATGCAAGGCTTATTTATTCATGTATTACTTATTTCATCTTCTGCATAAAATAATACATAGATTCCCTCATAACTTATACATGTATTAGTTATGTGAATCTCTAAGTTTCTAACCTAAAACTAGCTACAACGTATCAAGCTGACCCCTAAGGCTGTCCACTGGCACTTATGTAGTATGTTCAACTAACCTACGTTGTGAACAACTGTCTCCACAGTCTGAATTTGCCTGTAGTAGTACTCTTTTGTCCACATTGTTCAACTCCTTTGCCCGGGGGTCCAAACTCCAAAGAATCCTTTGGCCCAGCAGGTTCTTTGATACCCTGCATCACCTGTGATGTTTTCAAATCTTGCTTTCTGCTCGACCAATATCGAAAAAAATGATGCTTGTACCGATCTCCTTCTATGGGTACTTCACTCAGACATTTCCAACCATCTCCCCCAATTTTGATTCTTGCTCACTTGAGATGTTATTGGGTTCAGTTTCTTCCTCAGTAACTACTTATCCACCTCATATATTCTCAATTTCAATGTAAACCTTTTGCGACCAGAGGTGTAATGAGATCCTGCTGCTCACATTAATCTTCTGGGAAGCTGGTAGACAACCTGTCGTGGGGCTCCAGCAGAGCAAGCTAATATTTCTTGTCCTCCATCTCTACTCCTTCCACAGAATTTTTTATGCCATTTACCTGTTTGGGAACTCAAACAAGAACATATTCCTGTCCATATCATAAATATTGTCCCCAAAGGCAGCTGTCCAAGAGATGGAAGTTCATTTCTTTATTCCGTTTTGGTGATGTGATTTTCTGACTCCTCGTGAAATTTTCTGATGCCACACTTGTTAAGAAAGCCCTTTTTTCCTTTCCTCCAGATGCCTTTGTATGTCTATGTAATACAGATACAACAACATACCCAGTGTCATGTAATCCCACAACCAGGGTCTGAGGAACCTATCTAATACATATGTCTCCACTATTTGTAGAGACTAGACTCCCTGAGAATGTTTGATTGTCATTTAATCTCGCACGAAGTTTTAGCAAAAGTGTAACCTTTGATGCTGTGTGGCTCTGTAATTTTCAGTTGGTTGTGGCATTTAATGAACCTTTCAATGTTGAAAGGCTATTTCATTCCTCCCCCATTTAATATGATCTCAGGAATTATTATTACTGGCTTACCTTTCCCCTGAAGCGAAAGGATGCTCATGTGCCTGCCATATACATTAAACTTCCTAGTGCATAGAAATTCTGATAGTTTATGCTTGGTTTCCATCTTCTGATTGAATTTGTCGTCTCTTTCGATGCCTCTTTGAGAATGTTGCAGATCCAAGACACGTGCTAAGAGTCGATTGTCTCATCATGTTACTCCTTCTTTCTACCGAATCATACTAGCTCTCCTTGCTATCTGACTACCTGGTAATATCAAAGGATTTGAATCCGGCATTGAAGTATATCCTATTGTCTTCCAAGCTGGAATAACTCTGGACTTAAAAGAAAGAAAGAAAGAACGAGAGAGAGAGAGAAAATTCCATACACAAGGTGAAATGGAATTTTATACTATATCTACTTTTTTGGTGTAAACAGTTGTGTATAGTAGACACAGATCAGATTGTAGATTTGATAAGAAGTTTGTAATTGACACTTTTTGGTGGTGGCCAGCATGCCCTTAATGTTGAAGAATACAACCTTACCAGTTTTTTTTTAAAAAAAAAAGAAACAGAGAAAGAGAATGGAGATCTTGTCAGAGATGACAGGTTGTGAAATCTTAAAGAAGAAGAAAGAGAAAGAAGACTTTGACAGCAATCACAGTAAACTGAGCTACCGAGCTGTTCAAATTCCGGAAAGAGGCTGTTCTTGGGAAGTAGGATAGAGAATACCTCAGTAGACGCGCCTGGGAGCATTTTTTTCCCCATGCAAGTCTGTACTATTCTGCCTATTTTGTGACTGTTCTCCACTTAGTGCTTGTAGGGTTGATTCATCCGGTCCAGTTTTTCTAATGAACTTATATTTAGGATCACAAGTGAACAAAAATTCTTTTAGAAGTACTTCTTCAATCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCCCTTAGGTTCATTTGATCCCTTTCTTCCAATGGAAAACTTTTCTTTTGTGGAATAGTCATAAATTTGCAGTCCTTCATATAATTGTATCCTGTCATTCAACAAACTCTTCATTCTTTCCCTCTGATCATATGATCAAAATTCTTTCTAGTTCAGATGACAAATATATTTAGCTTTCTAGTATTTCAAGTTCCCTTTTCCTTTTTTTTACGTGCCTATGCATCAATATCTAAAGCAAACGAAGTTAGCTTGTAATTGCGAACTCTAGACGGGAGCATAAAAGTAAAACCATAATCGTGTATAATGTACATAATGTCTCAAAGGGTTAGATTCATGTACACTTCCTGCATGTTCGAGGTTCGCTCATTTCCTCAACTTTTGAAATTACACTTACACTAACTCTGTCTTGGATGTTTTCTGCTAAAGTAGAGATAGTTACCCGTTATTTGCCTTGTTGTTTCATGACTATGGTCGTTCATCAACAATTATTCTCTCTCTCCTTCAAAATTGATGATTTTGTGTACTGGTGACACCAAATGTAACTCAAATGATCACACTCTGGAGAGCACTATGAGGGTTTTGGGTTGATATGTTTCTTTGTTCTCTAGTATCCGGCCATAAAAAGGGTTGTATTCTATCGTTTGAGTCAACTATTGTTCTGTTTCATGTCATCTAATCCCTGTGTTGTTTCCTTTTGTGTTAGGTTTTGTATTTCTTTAATTTCCAAATTTATGATGTTTGTTTGGTTCACTAAGTTTTAATATTTGGATGATGCATTGAGATTTGAATCAATTCAGACTTTTCAGTAGTCATAAAAGATTATTCGCTTATTTTTTATCTGAACAATTCGATATCCTCTCTTGTTTGTTGCAGGAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTATTTTAAAA</genome_strand>
        <mrna_strand>CTCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAAGATGTGATTGATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310587" ref_strand="+" ref_description="SGN-E310587 [cLEZ-19-H18]">
      <seq>tctctttctttttgtgagagagctttcaattgttcgcaatcggtaaatcctttctcgtcgtcatggattgaaccataaatcaatctctctgatctctctttctctctctaacagcatggccacttccttctctctctaggattttgtggtttgatttcataaaatttctagttaggtaattgtaggggttttttccagttctttgtacggtgaagcgtgaagttttcttctggttttcgagctgagttcctccaagtcgttggcttctgcaatttcttttacgttaggagcagaactataaattgcttgcaggaaccttgacatatgctttctgttgagacttgaatcaccagcatggatttgaatgccttgccacagccagaggatgacgacgagatttttggacaacaattagaagatgaaccacaagaacctattttacgtagtgatgagcgtgcagattatgtcacgagtgctgtagagatttcacgtcgcgtatgtttctgcttatactgctcgctgtatcaactattgaactgtactactacttgaacttgctcgtttattggatatttctttttggctccttgtttgatacatgtctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="69035" stop="74726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69335" g_stop="69621" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69622" i_stop="74105" i_length="4484">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74106" g_stop="74426" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="608" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E310587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69335" e_stop="69621"/>
          <exon e_start="74106" e_stop="74426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAGGTATGAATTCTTCTTCTTCTTCTTCTTATTATTATTAATAGTTTAATTTGTATTTTGATATGCAATTCGAATTCATTTTTCTTCTTCTTCTTCTTCATTTTGGGTGACATTTCTTTAAAAGGATTAATTTAGAGTTTTGGAGCTACTAATCATAGTTATTAGGGTTTAATTGTTATGTACCTTGATGTTGGATGCTTAGAATTACTGCGGAATTGATTTTGACTTTTATTTTTTCCCTTTCGAAAGTTATAATTTTTAAAAGTGACTGAGACTGATGCTTGGTGATGATATATTTTTTTTATTTGCATTGGCTATATATGTGTATTTGGGGAACACTTGCTGTTTGATTTTCTTTTCTTTTTTTGTTTGGGTTGGGTCAATTCAAATTTTTATGTGTTATTTTCTGTTGCTTTTTCCAGTTTTTTAAAAGCATGGTATCACACACTAGGGTTCATTTGATTTTGTTTCTTGCGCTTTTCTGCTTAGATTAATTGTACGTCTTTTTTACAATTTTAGTTTTTGCACTAATTGAGACTGAGCTTTTTTTTTTTTTTTGCTTCATTGGTATGATTTCTTTGGGGAGCATGTCTTGTTTGTTGGTTGCTGTTCAAGTGTGTTAATTGTCGGGGTTTAAATTGGGCTTTTATGTGGTTTCGAAATGGAATTGGTTTGTTACACTTGTTGGTTTCCATTGATGTCAGTGTACAGGTTTGTTCTTTGACAACCTAATGACATAGTTCACATGTCATTTATTAATTGAAGTATGGTGTTTTATGTTTGGTGGTCAGTCTTGTTGTTGGCAGCTTTCTCCTAGGGGAGTTGGTACTATAAGCGAATGTGCATAGTTAAGCTGGAATTGTTAAACATGGAGAATCCATTAAGAAACTATGTTTTTGTCTCAATTTTGTTTGGCAGTATCTGGATTGACACAGAGTTTAGGCTAAAAGTGCCTTCCTTCCATACCAAAATCTTTGTTTTTCTTATCTAGCGGGACGTACAACACGGCATGTCCTTGGTGAAATAGGAATGTAAAAATTAATTAGATGCCATCATCTTGAGATAGAGACTATAAGATGAGTTCCAATCAAAATTGTGACAGAGGGAGTATTAAATATTGGTGTGAAGAGTTAAATATTTAGCCAATTAGATTTAATTTGTGGTGATTTGGTCGTTGTTCTTTGATAATTTTCATGTCATAGGAGGTTATTCCTTCTATGCCATAATGCAACTGTCCTTGAAGTAGCATGTTATCATATCTCTTATCATCTGATCCTTTGAATGTAATGTGATACCCTTCCCTGTCGTTCGTTCCTGAGCACATACATGGGAGTTAGCTCTATACATTAGGAGTCGTTTGGTAGTTGGTTAAAGTTATGTTGGTATTAGTAATACATGGACTAATTATGAGGGAATCCATGTATATCTTATGCAAAAATTAGTTATGCAAGGCTTATTTATTCATGTATTACTTATTTCATCTTCTGCATAAAATAATACATAGATTCCCTCATAACTTATACATGTATTAGTTATGTGAATCTCTAAGTTTCTAACCTAAAACTAGCTACAACGTATCAAGCTGACCCCTAAGGCTGTCCACTGGCACTTATGTAGTATGTTCAACTAACCTACGTTGTGAACAACTGTCTCCACAGTCTGAATTTGCCTGTAGTAGTACTCTTTTGTCCACATTGTTCAACTCCTTTGCCCGGGGGTCCAAACTCCAAAGAATCCTTTGGCCCAGCAGGTTCTTTGATACCCTGCATCACCTGTGATGTTTTCAAATCTTGCTTTCTGCTCGACCAATATCGAAAAAAATGATGCTTGTACCGATCTCCTTCTATGGGTACTTCACTCAGACATTTCCAACCATCTCCCCCAATTTTGATTCTTGCTCACTTGAGATGTTATTGGGTTCAGTTTCTTCCTCAGTAACTACTTATCCACCTCATATATTCTCAATTTCAATGTAAACCTTTTGCGACCAGAGGTGTAATGAGATCCTGCTGCTCACATTAATCTTCTGGGAAGCTGGTAGACAACCTGTCGTGGGGCTCCAGCAGAGCAAGCTAATATTTCTTGTCCTCCATCTCTACTCCTTCCACAGAATTTTTTATGCCATTTACCTGTTTGGGAACTCAAACAAGAACATATTCCTGTCCATATCATAAATATTGTCCCCAAAGGCAGCTGTCCAAGAGATGGAAGTTCATTTCTTTATTCCGTTTTGGTGATGTGATTTTCTGACTCCTCGTGAAATTTTCTGATGCCACACTTGTTAAGAAAGCCCTTTTTTCCTTTCCTCCAGATGCCTTTGTATGTCTATGTAATACAGATACAACAACATACCCAGTGTCATGTAATCCCACAACCAGGGTCTGAGGAACCTATCTAATACATATGTCTCCACTATTTGTAGAGACTAGACTCCCTGAGAATGTTTGATTGTCATTTAATCTCGCACGAAGTTTTAGCAAAAGTGTAACCTTTGATGCTGTGTGGCTCTGTAATTTTCAGTTGGTTGTGGCATTTAATGAACCTTTCAATGTTGAAAGGCTATTTCATTCCTCCCCCATTTAATATGATCTCAGGAATTATTATTACTGGCTTACCTTTCCCCTGAAGCGAAAGGATGCTCATGTGCCTGCCATATACATTAAACTTCCTAGTGCATAGAAATTCTGATAGTTTATGCTTGGTTTCCATCTTCTGATTGAATTTGTCGTCTCTTTCGATGCCTCTTTGAGAATGTTGCAGATCCAAGACACGTGCTAAGAGTCGATTGTCTCATCATGTTACTCCTTCTTTCTACCGAATCATACTAGCTCTCCTTGCTATCTGACTACCTGGTAATATCAAAGGATTTGAATCCGGCATTGAAGTATATCCTATTGTCTTCCAAGCTGGAATAACTCTGGACTTAAAAGAAAGAAAGAAAGAACGAGAGAGAGAGAGAAAATTCCATACACAAGGTGAAATGGAATTTTATACTATATCTACTTTTTTGGTGTAAACAGTTGTGTATAGTAGACACAGATCAGATTGTAGATTTGATAAGAAGTTTGTAATTGACACTTTTTGGTGGTGGCCAGCATGCCCTTAATGTTGAAGAATACAACCTTACCAGTTTTTTTTTAAAAAAAAAAGAAACAGAGAAAGAGAATGGAGATCTTGTCAGAGATGACAGGTTGTGAAATCTTAAAGAAGAAGAAAGAGAAAGAAGACTTTGACAGCAATCACAGTAAACTGAGCTACCGAGCTGTTCAAATTCCGGAAAGAGGCTGTTCTTGGGAAGTAGGATAGAGAATACCTCAGTAGACGCGCCTGGGAGCATTTTTTTCCCCATGCAAGTCTGTACTATTCTGCCTATTTTGTGACTGTTCTCCACTTAGTGCTTGTAGGGTTGATTCATCCGGTCCAGTTTTTCTAATGAACTTATATTTAGGATCACAAGTGAACAAAAATTCTTTTAGAAGTACTTCTTCAATCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCCCTTAGGTTCATTTGATCCCTTTCTTCCAATGGAAAACTTTTCTTTTGTGGAATAGTCATAAATTTGCAGTCCTTCATATAATTGTATCCTGTCATTCAACAAACTCTTCATTCTTTCCCTCTGATCATATGATCAAAATTCTTTCTAGTTCAGATGACAAATATATTTAGCTTTCTAGTATTTCAAGTTCCCTTTTCCTTTTTTTTACGTGCCTATGCATCAATATCTAAAGCAAACGAAGTTAGCTTGTAATTGCGAACTCTAGACGGGAGCATAAAAGTAAAACCATAATCGTGTATAATGTACATAATGTCTCAAAGGGTTAGATTCATGTACACTTCCTGCATGTTCGAGGTTCGCTCATTTCCTCAACTTTTGAAATTACACTTACACTAACTCTGTCTTGGATGTTTTCTGCTAAAGTAGAGATAGTTACCCGTTATTTGCCTTGTTGTTTCATGACTATGGTCGTTCATCAACAATTATTCTCTCTCTCCTTCAAAATTGATGATTTTGTGTACTGGTGACACCAAATGTAACTCAAATGATCACACTCTGGAGAGCACTATGAGGGTTTTGGGTTGATATGTTTCTTTGTTCTCTAGTATCCGGCCATAAAAAGGGTTGTATTCTATCGTTTGAGTCAACTATTGTTCTGTTTCATGTCATCTAATCCCTGTGTTGTTTCCTTTTGTGTTAGGTTTTGTATTTCTTTAATTTCCAAATTTATGATGTTTGTTTGGTTCACTAAGTTTTAATATTTGGATGATGCATTGAGATTTGAATCAATTCAGACTTTTCAGTAGTCATAAAAGATTATTCGCTTATTTTTTATCTGAACAATTCGATATCCTCTCTTGTTTGTTGCAGGAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTT</genome_strand>
        <mrna_strand>TCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297138" ref_strand="+" ref_description="SGN-E297138 [cLET-29-G5]">
      <seq>cagttctttgtacggtgaagcgtgaagttttcttctggttgtcgagctgagttcctccaagtcgttggcttctgcaatttcttttacgttaggagcagaactataaattgcttgcaggaaccttgacatatgctttctgttgagacttgaatcaccagcatggatttgaatgccttgccacagccagaggatgacgacgagatttttggacaacaattagaagatgaaccacaagaacctattttacgtagtgatgagcgtgcagattatgtcacgagtgctgtagagatttcacgtcgcgtatgtttctgcttatactgctcgctgtatcaactattgaactgtactactacttgaacttgctcgtttattggatatttctttttggctccttgtttgatacatgtctcttttatcttggttgtttctttgctgcttgtcatcggcagagcaataactaatagaaagctttgtaaaataaaattttgttaaatcaaaatccagaggatgtgattgatttattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="69230" stop="74846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69530" g_stop="69621" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69622" i_stop="74105" i_length="4484">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74106" g_stop="74546" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="533" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E297138" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69530" e_stop="69621"/>
          <exon e_start="74106" e_stop="74546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAGGTATGAATTCTTCTTCTTCTTCTTCTTATTATTATTAATAGTTTAATTTGTATTTTGATATGCAATTCGAATTCATTTTTCTTCTTCTTCTTCTTCATTTTGGGTGACATTTCTTTAAAAGGATTAATTTAGAGTTTTGGAGCTACTAATCATAGTTATTAGGGTTTAATTGTTATGTACCTTGATGTTGGATGCTTAGAATTACTGCGGAATTGATTTTGACTTTTATTTTTTCCCTTTCGAAAGTTATAATTTTTAAAAGTGACTGAGACTGATGCTTGGTGATGATATATTTTTTTTATTTGCATTGGCTATATATGTGTATTTGGGGAACACTTGCTGTTTGATTTTCTTTTCTTTTTTTGTTTGGGTTGGGTCAATTCAAATTTTTATGTGTTATTTTCTGTTGCTTTTTCCAGTTTTTTAAAAGCATGGTATCACACACTAGGGTTCATTTGATTTTGTTTCTTGCGCTTTTCTGCTTAGATTAATTGTACGTCTTTTTTACAATTTTAGTTTTTGCACTAATTGAGACTGAGCTTTTTTTTTTTTTTTGCTTCATTGGTATGATTTCTTTGGGGAGCATGTCTTGTTTGTTGGTTGCTGTTCAAGTGTGTTAATTGTCGGGGTTTAAATTGGGCTTTTATGTGGTTTCGAAATGGAATTGGTTTGTTACACTTGTTGGTTTCCATTGATGTCAGTGTACAGGTTTGTTCTTTGACAACCTAATGACATAGTTCACATGTCATTTATTAATTGAAGTATGGTGTTTTATGTTTGGTGGTCAGTCTTGTTGTTGGCAGCTTTCTCCTAGGGGAGTTGGTACTATAAGCGAATGTGCATAGTTAAGCTGGAATTGTTAAACATGGAGAATCCATTAAGAAACTATGTTTTTGTCTCAATTTTGTTTGGCAGTATCTGGATTGACACAGAGTTTAGGCTAAAAGTGCCTTCCTTCCATACCAAAATCTTTGTTTTTCTTATCTAGCGGGACGTACAACACGGCATGTCCTTGGTGAAATAGGAATGTAAAAATTAATTAGATGCCATCATCTTGAGATAGAGACTATAAGATGAGTTCCAATCAAAATTGTGACAGAGGGAGTATTAAATATTGGTGTGAAGAGTTAAATATTTAGCCAATTAGATTTAATTTGTGGTGATTTGGTCGTTGTTCTTTGATAATTTTCATGTCATAGGAGGTTATTCCTTCTATGCCATAATGCAACTGTCCTTGAAGTAGCATGTTATCATATCTCTTATCATCTGATCCTTTGAATGTAATGTGATACCCTTCCCTGTCGTTCGTTCCTGAGCACATACATGGGAGTTAGCTCTATACATTAGGAGTCGTTTGGTAGTTGGTTAAAGTTATGTTGGTATTAGTAATACATGGACTAATTATGAGGGAATCCATGTATATCTTATGCAAAAATTAGTTATGCAAGGCTTATTTATTCATGTATTACTTATTTCATCTTCTGCATAAAATAATACATAGATTCCCTCATAACTTATACATGTATTAGTTATGTGAATCTCTAAGTTTCTAACCTAAAACTAGCTACAACGTATCAAGCTGACCCCTAAGGCTGTCCACTGGCACTTATGTAGTATGTTCAACTAACCTACGTTGTGAACAACTGTCTCCACAGTCTGAATTTGCCTGTAGTAGTACTCTTTTGTCCACATTGTTCAACTCCTTTGCCCGGGGGTCCAAACTCCAAAGAATCCTTTGGCCCAGCAGGTTCTTTGATACCCTGCATCACCTGTGATGTTTTCAAATCTTGCTTTCTGCTCGACCAATATCGAAAAAAATGATGCTTGTACCGATCTCCTTCTATGGGTACTTCACTCAGACATTTCCAACCATCTCCCCCAATTTTGATTCTTGCTCACTTGAGATGTTATTGGGTTCAGTTTCTTCCTCAGTAACTACTTATCCACCTCATATATTCTCAATTTCAATGTAAACCTTTTGCGACCAGAGGTGTAATGAGATCCTGCTGCTCACATTAATCTTCTGGGAAGCTGGTAGACAACCTGTCGTGGGGCTCCAGCAGAGCAAGCTAATATTTCTTGTCCTCCATCTCTACTCCTTCCACAGAATTTTTTATGCCATTTACCTGTTTGGGAACTCAAACAAGAACATATTCCTGTCCATATCATAAATATTGTCCCCAAAGGCAGCTGTCCAAGAGATGGAAGTTCATTTCTTTATTCCGTTTTGGTGATGTGATTTTCTGACTCCTCGTGAAATTTTCTGATGCCACACTTGTTAAGAAAGCCCTTTTTTCCTTTCCTCCAGATGCCTTTGTATGTCTATGTAATACAGATACAACAACATACCCAGTGTCATGTAATCCCACAACCAGGGTCTGAGGAACCTATCTAATACATATGTCTCCACTATTTGTAGAGACTAGACTCCCTGAGAATGTTTGATTGTCATTTAATCTCGCACGAAGTTTTAGCAAAAGTGTAACCTTTGATGCTGTGTGGCTCTGTAATTTTCAGTTGGTTGTGGCATTTAATGAACCTTTCAATGTTGAAAGGCTATTTCATTCCTCCCCCATTTAATATGATCTCAGGAATTATTATTACTGGCTTACCTTTCCCCTGAAGCGAAAGGATGCTCATGTGCCTGCCATATACATTAAACTTCCTAGTGCATAGAAATTCTGATAGTTTATGCTTGGTTTCCATCTTCTGATTGAATTTGTCGTCTCTTTCGATGCCTCTTTGAGAATGTTGCAGATCCAAGACACGTGCTAAGAGTCGATTGTCTCATCATGTTACTCCTTCTTTCTACCGAATCATACTAGCTCTCCTTGCTATCTGACTACCTGGTAATATCAAAGGATTTGAATCCGGCATTGAAGTATATCCTATTGTCTTCCAAGCTGGAATAACTCTGGACTTAAAAGAAAGAAAGAAAGAACGAGAGAGAGAGAGAAAATTCCATACACAAGGTGAAATGGAATTTTATACTATATCTACTTTTTTGGTGTAAACAGTTGTGTATAGTAGACACAGATCAGATTGTAGATTTGATAAGAAGTTTGTAATTGACACTTTTTGGTGGTGGCCAGCATGCCCTTAATGTTGAAGAATACAACCTTACCAGTTTTTTTTTAAAAAAAAAAGAAACAGAGAAAGAGAATGGAGATCTTGTCAGAGATGACAGGTTGTGAAATCTTAAAGAAGAAGAAAGAGAAAGAAGACTTTGACAGCAATCACAGTAAACTGAGCTACCGAGCTGTTCAAATTCCGGAAAGAGGCTGTTCTTGGGAAGTAGGATAGAGAATACCTCAGTAGACGCGCCTGGGAGCATTTTTTTCCCCATGCAAGTCTGTACTATTCTGCCTATTTTGTGACTGTTCTCCACTTAGTGCTTGTAGGGTTGATTCATCCGGTCCAGTTTTTCTAATGAACTTATATTTAGGATCACAAGTGAACAAAAATTCTTTTAGAAGTACTTCTTCAATCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCACTCACTTTTTTCCTTTTGATTGGTAGAAGACTTTTGTGTCTTCACTTATCCTATTTTGTTCCCTTAGGTTCATTTGATCCCTTTCTTCCAATGGAAAACTTTTCTTTTGTGGAATAGTCATAAATTTGCAGTCCTTCATATAATTGTATCCTGTCATTCAACAAACTCTTCATTCTTTCCCTCTGATCATATGATCAAAATTCTTTCTAGTTCAGATGACAAATATATTTAGCTTTCTAGTATTTCAAGTTCCCTTTTCCTTTTTTTTACGTGCCTATGCATCAATATCTAAAGCAAACGAAGTTAGCTTGTAATTGCGAACTCTAGACGGGAGCATAAAAGTAAAACCATAATCGTGTATAATGTACATAATGTCTCAAAGGGTTAGATTCATGTACACTTCCTGCATGTTCGAGGTTCGCTCATTTCCTCAACTTTTGAAATTACACTTACACTAACTCTGTCTTGGATGTTTTCTGCTAAAGTAGAGATAGTTACCCGTTATTTGCCTTGTTGTTTCATGACTATGGTCGTTCATCAACAATTATTCTCTCTCTCCTTCAAAATTGATGATTTTGTGTACTGGTGACACCAAATGTAACTCAAATGATCACACTCTGGAGAGCACTATGAGGGTTTTGGGTTGATATGTTTCTTTGTTCTCTAGTATCCGGCCATAAAAAGGGTTGTATTCTATCGTTTGAGTCAACTATTGTTCTGTTTCATGTCATCTAATCCCTGTGTTGTTTCCTTTTGTGTTAGGTTTTGTATTTCTTTAATTTCCAAATTTATGATGTTTGTTTGGTTCACTAAGTTTTAATATTTGGATGATGCATTGAGATTTGAATCAATTCAGACTTTTCAGTAGTCATAAAAGATTATTCGCTTATTTTTTATCTGAACAATTCGATATCCTCTCTTGTTTGTTGCAGGAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTATTTTAAAAAAAA</genome_strand>
        <mrna_strand>CAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTGTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTATTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223466" ref_strand="+" ref_description="SGN-E223466 [cLEL-14-L2](-)">
      <seq>gtcgatactattcattgtcagattggaggaaacaaggcatcaagcacgtaaaggttggtacatggtaataaagtcatggaggagaaaaggtgatgagggcatattttttctctctgatttattgttgttgtcctgatttttattctttcacgtgtatcagattcaatgcagaggccgcggttctgcacctgacaatgagtctgtaaatttatttgtctctgaggtaattttatatatgttggttgcatgtttagttgaatgctgtacctgagaataagcttgcattacttaccatgtaaagtactacaagtttgtttgcgtacctttatccatacatggttagatcttcgctgttactattatcatatatgttacacttggtgcaattattaatgtgtgttgtttgccaatcaagtggaaaactaagttgatgactaatttgtttgtaatcttctaggaataaaaaggagaagctattttgagaatgatagggcctttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="76049" stop="77166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76349" g_stop="76866" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E223466" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76349" e_stop="76866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGATACTATTCATTGTCAGATTGGAGGAAACAAGGCATCAAGCACGTAAAGGTTGGTACATGGTAATAAAGTCATGGAGGAGAAAAGGTGATGAGGGCATATTTTTTCTCTCTGATTTATTGTTGTTGTCCTGATTTTTATTCTTTCACGTGTATCAGATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAATAAAAATAAAAA</genome_strand>
        <mrna_strand>GTCGATACTATTCATTGTCAGATTGGAGGAAACAAGGCATCAAGCACGTAAAGGTTGGTACATGGTAATAAAGTCATGGAGGAGAAAAGGTGATGAGGGCATATTTTTTCTCTCTGATTTATTGTTGTTGTCCTGATTTTTATTCTTTCACGTGTATCAGATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316310" ref_strand="+" ref_description="SGN-E316310 [cTOA-25-A15]">
      <seq>gaaacaaggcatcaagcacgtaaagattcaatgcagaggccgcggttctgcacctgacaatgagtctgtaaatttatttgtctctgaggtaattttatatatgttggttgcatgtttagttgaatgctgtacctgagaataagcttgcattacttaccatgtaaagtactacaagtttgtttgcgtacctttatccatacatggttagatcttcgctgttactattatcatatatgttacacttggtgcaattattaatgtgtgttgtttgccaatcaagtggaaaactaagttgatgactaatttgtttgtaatcttctaggaataaaaaggagaagctattttgagaatgatagggcctttgtcaaaaataaaaataaaaataaaaatgatagggtagatattttgtaattttatgttatataatgaatgtgctctattcttatcgaaagaaagaatataatccattccttcaagtggagccttggtgtaacggtaaaagctgtcattgtgttattagatcgtcacatgttcaagctgtgaaaatagttttttgtgggaatgcaatataatgttgtgtacagtagatcgaatatggtctccttgttgggtttttgttatctttttaggtgatatttcctcctatattgtgactatgcatctacttgatgcctttgtgatttatagaacacttcatcaaaaagatatggtcccctctctggacctggacagtggaaacttaatgcactanggctctacactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="76077" stop="77548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76377" g_stop="76401" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76402" i_stop="76508" i_length="107">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76509" g_stop="77248" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="765" r_length="740" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E316310" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76377" e_stop="76401"/>
          <exon e_start="76509" e_stop="77248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAAGGCATCAAGCACGTAAAGGTTGGTACATGGTAATAAAGTCATGGAGGAGAAAAGGTGATGAGGGCATATTTTTTCTCTCTGATTTATTGTTGTTGTCCTGATTTTTATTCTTTCACGTGTATCAGATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAATAAAAATAAAAATAAAAATGATAGGGTAGATATTTTGTAATTTTATGTTATATAATGAATGTGCTCTATTCTTATCGAAAGAAAGAATATAATCCATTCCTTCAAGTGGAGCCTTGGTGTAACGGTAAAAGCTGTCATTGTGTTATTAGATCGTCACATGTTCAAGCTGTGAAAATAGTTTTTTGTGGGAATGCAATATAATGTTGTGTACAGTAGATCGAATATGGTCTCCTTGTTGGGTTTTTGTTATCTTTTTAGGTGATATTTCCTCCTATATTGTGACTATGCATCTACTTGATGCCTTTGTGATTTATAGAACACTTCATCAAAAAGATATGGTCCCCTCTCTGGACCTGGACAGTGGAAACTTAATGCACTAGGGCTCTACACTCTT</genome_strand>
        <mrna_strand>GAAACAAGGCATCAAGCACGTAAAG...........................................................................................................ATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAATAAAAATAAAAATAAAAATGATAGGGTAGATATTTTGTAATTTTATGTTATATAATGAATGTGCTCTATTCTTATCGAAAGAAAGAATATAATCCATTCCTTCAAGTGGAGCCTTGGTGTAACGGTAAAAGCTGTCATTGTGTTATTAGATCGTCACATGTTCAAGCTGTGAAAATAGTTTTTTGTGGGAATGCAATATAATGTTGTGTACAGTAGATCGAATATGGTCTCCTTGTTGGGTTTTTGTTATCTTTTTAGGTGATATTTCCTCCTATATTGTGACTATGCATCTACTTGATGCCTTTGTGATTTATAGAACACTTCATCAAAAAGATATGGTCCCCTCTCTGGACCTGGACAGTGGAAACTTAATGCACTANGGCTCTACACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215436" ref_strand="+" ref_description="SGN-E215436 [cLEL-20-M18](-)">
      <seq>aaaaggtgatgagggcatattttttctctctgatttattgttgttgtcctgatttttattctttcacgtgtatcagattcaatgcagaggccgcggttctgcacctgacaatgagtctgtaaatttatttgtctctgaggtaattttatatatgttggttgcatgtttagttgaatgctgtacctgagaataagcttgcattacttaccatgtaaagtactacaagtttgtttgcgtacctttatccatacatggttagatcttcgctgttactattatcatatatgttacacttggtgcaattattaatgtgtgttgtttgccaatcaagtggaaaactaagttgatgactaatttgtttgtaatcttctaggaataaaaaggagaagctattttgagaatgatagggcctttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="76133" stop="77166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76433" g_stop="76866" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E215436" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76433" e_stop="76866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTGATGAGGGCATATTTTTTCTCTCTGATTTATTGTTGTTGTCCTGATTTTTATTCTTTCACGTGTATCAGATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAATAAAAATAAAAA</genome_strand>
        <mrna_strand>AAAAGGTGATGAGGGCATATTTTTTCTCTCTGATTTATTGTTGTTGTCCTGATTTTTATTCTTTCACGTGTATCAGATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223529" ref_strand="+" ref_description="SGN-E223529 [cLEL-14-L2](-)">
      <seq>agggcatattttttctctctgatttattgttgttgtcctgatttttattctttcacgtgtatcagattcaatgcagaggccgcggttctgcacctgacaatgagtctgtaaatttatttgtctctgaggtaattttatatatgttggttgcatgtttagttgaatgctgtacctgagaataagcttgcattacttaccatgtaaagtactacaagtttgtttgcgtacctttatccatacatggttagatcttcgctgttactattatcatatatgttacacttggtgcaattattaatgtgtgttgtttgccaatcaagtggaaaactaagttgatgactaatttgtttgtaatcttctaggaataaaaaggagaagctattttgagaatgatagggcctttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="76144" stop="77166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76444" g_stop="76865" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E223529" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76444" e_stop="76865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCATATTTTTTCTCTCTGATTTATTGTTGTTGTCCTGATTTTTATTCTTTCACGTGTATCAGATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAATAAAAATAAAA</genome_strand>
        <mrna_strand>AGGGCATATTTTTTCTCTCTGATTTATTGTTGTTGTCCTGATTTTTATTCTTTCACGTGTATCAGATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215340" ref_strand="+" ref_description="SGN-E215340 [cLEL-20-M18](-)">
      <seq>tttattctttcacgtgtatcagattcaatgcagaggccgcggttctgcacctgacaatgagtctgtaaatttatttgtctctgaggtaattttatatatgttggttgcatgtttagttgaatgctgtacctgagaataagcttgcattacttaccatgtaaagtactacaagtttgtttgcgtacctttatccatacatggttagatcttcgctgttactattatcatatatgttacacttggtgcaattattaatgtgtgttgtttgccaatcaagtggaaaactaagttgatgactaatttgtttgtaatcttctaggaataaaaaggagaagctattttgagaatgatagggcctttgtcccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="76187" stop="77166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76487" g_stop="76866" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E215340" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76487" e_stop="76866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTTTCACGTGTATCAGATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAATAAAAATAAAAA</genome_strand>
        <mrna_strand>TTTATTCTTTCACGTGTATCAGATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCCCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450192" ref_strand="+" ref_description="SGN-E450192 [cSTS-8-L23]">
      <seq>cgatggccattaagcatgtaaagattcaatggcagaggccgtggttctgcacctgacaatgagtctgtaaattcatttgtctatgaggtttcacaatttcttgcccgtcaaaaacatgcaaagaagtatattcttgttcattgcacacatgggcataatcgcactgggtttatgattattcattatcttatgcgtacgctgccaatatctgtcagtcaggcaattaaaattttttctgatgctcgtcctcctgggatctataagccagactatattgatgccctatatgccttctatcatgagaaaaaacctgaaatggttgtttgtcctccaacacctgagtggaaaagatcttctgagcttgatttgaatggtgatgctatgcctgatgacgatgacgatggaggtcctacagctcctttgactgacaatcttgaagcacaagtagtaacctcaaatgatgacattttgggagatgcaatcccacaagatcagcaaaattatttacgacagttctgttatcaagcactgaaaatgaccccaggggtagaaattttgcagttggttctttggtgtctttataattgttgcatgggaatttatatatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="76207" stop="81347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76509" g_stop="76571" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="87" r_length="64" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76572" i_stop="77897" i_length="1326">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77898" g_stop="78029" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="219" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78030" i_stop="78116" i_length="87">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.379" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78117" g_stop="78323" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="426" r_length="207" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78324" i_stop="80879" i_length="2556">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80880" g_stop="81063" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="610" r_length="184" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E450192" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76509" e_stop="76571"/>
          <exon e_start="77898" e_stop="78029"/>
          <exon e_start="78117" e_stop="78323"/>
          <exon e_start="80880" e_stop="81063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAT-GCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAATAAAAATAAAAATAAAAATGATAGGGTAGATATTTTGTAATTTTATGTTATATAATGAATGTGCTCTATTCTTATCGAAAGAAAGAATATAATCCATTCCTTCAAGTGGAGCCTTGGTGTAACGGTAAAAGCTGTCATTGTGTTATTAGATCGTCACATGTTCAAGCTGTGAAAATAGTTTTTTGTGGGAATGCAATATAATGTTGTGTACAGTAGATCGAATATGGTCTCCTTGTTGGGTTTTTGTTATCTTTTTAGGTGATATTTCCTCCTATATTGTGACTATGCATCTACTTGATGCCTTTGTGATTTATAGAACACTTCATCAAAAAGATATGGTCCCCTCTCTGGACCTGGACAGTGGAAACTTAATGCACTAGGGCTCTACACTCTTATTAACAGGAAAAGGGAACATTGTTGGATCCTGCATTTCCTTTTTGAATTGTCCCAATTCACATAAGATGTCAGGAGAGCCTTGACACAACAGTAAAAGTGGTGGTCCGTCCTTCCTTGGACCTCATATATTATGGGAGCTTAGAGTACTAGGACTACCCTATCTTATTAATAGGAATATGAATGTCATTGTAACCTGCATCTCCTCCTTGGGTAGTCCCAATTCACATAAATATCATGTATCCAACCCCCCAATCCCGTAGAGAAGATGTTTCAATTTGACCAAGAATCACCTGATTTTATGGAAGGAAAAGAAAGCATTATGAACTTGAAAATCCATTTTAATCTTTTTCTTTTTCAGATGTGAAAAGTTGTGGGTAATACTGTATTTGCAATGGAAACTGTATTTTGTCAGAATTTATCTCAGATTAAAAAGATTTGTATTTCCTCAGAGTATTCGAAAGGTGTTCTGTTGACCTCTAGTTAGGTTTTCTTAGTATTAGGACTTAGCATTGATGAGAAGCGTGTTGTCATATGTGTTTTACTCTGTTCAAGGCTTTAAGCAAATAAAGGCTAACTTTATCACATCTTCGCTGAATGTTATATCCTATTGAATGGAACTTGATACTAATATTTATGGCTTCTATGAGGTTTCACAATTTCTTGCCCGTCAGAAACATGCAAAGAAGTATATTCTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAGGTCAGTAATTTTGCGATACTACATCCTTCTTGCTTTAAACTTAACCACATATCTCTGAGTATGAATAATGAGAGTACTTCTATGCAGGCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACTGTATGTGCTTCTGCAAGAGAACTTTCCTCGTAGATATTGTTGAACTTTATTAGTGGTTGAAGTGTTTGATTTTTTCCTTCTCTGATGAAAGTGTAAGCCTTTAGTTGTTTTTCCTTCTCTGATAGAAATGCAAGCCTTCGGTTTCCACTTCTGTGGTGTTGAATTTGATTGAATGTGAACACTAAGCTATTCTAGTTGATCTCGATATTAGAATGAGAAACCTATCACTTTCTATCTTTCTGATACTTCTATGGTGAGAATTAGTGGAGCTTGATTTTGAGTGCAACATTAAGCTTGATTATGGAAATTGCCAATATATGACATTCCCAAGTTGTTTTGTCAATGGAGATTGTAAATGAGGAACTCTTGAGTAACGACCTTGCATACTTGGGATGCAAGGATTGCCACAGCTTTTTGAAGGCATGATTCCTAATCGGAGATTACTTGAATCAGGAAGGGCTGGTCATTAATGCCTCATGCCTGTCTAGGCTAGATGTATTGAACCACCTTATGCAAGTCTCCTTTCGTCAGCCATGAGACGTTCCCATGTATGGTCTTAATATTCACTTCCGTTTCGGTTTGATGAAATTTGTACCATAAAATGTTCATATGTTATTCTCAGAGTGAGGACTTCTTTTCCTTGGACTCCAACTAGTTTTTGTCAGGATATGAATCCTCTATATAATTTGCTTTATTGCACTCAATTTCATTTCAACTCTGGAGTGATAATTAAGAAAATGATCTCTTGTTCTCCTTTATCGTTCATTCCCCACCCAGCAACCCTTTATGAGTTAGCGGGTTAAGGGTGAAATAAGTAGCCAAAATTTAATGCTGAAGATTTTTGGGTCATATCTTCCGTTTTCTTAATGTCCGTCCTGGGTGGCTTAATGTGATGATAAAGGTTTCCTAGGATTGTTCTTTCTTGATTGAAAGAATTCTCCTATAAATTCTGAGAACTCTGTACTCCGCGAATTTCTTTCTTATTTGCATTTGAGTGTTTTTACCTCCATTGACAGCCTATTTTATCGCCTTTGGTCCCCCATCAATTTAGACACCCCCAAGAAGAATCTAGTTTTTTTTAAAAGCTTGACAAAGGTCGCTAAGCAGTGGTAGAAGAGATCTAACTTTTGCTTAGACTTAGAGAAAGCATAATATTTTCTAACTTGAAAAAGAGTCTCATAAAATTGTTTAAAAATACACATACTAAAATGGTGTCATATTCGCTGACCTTCTAGAAAGATCAACGAGGTTCACTCCACCAATCAAAGAAAGACGCACCCAAGAAGAAATCTAGTTTTTTCTTTAAAGTTCAATAGAAGTGGCTAAACAGTGCTAGAAGAGATCTGACTTTTGTTTAGACTTAGAGCAAGCATAATATAGAAAGATAAACGAAGCTCGTTCTCCTTTTCTCTAATCTTTTGCTTGGGAAAGAGCATTTTGATGTTTTGGTATATTCTATCATCACTCCTTCACTGCTTTTGAAGGTTTTGACGATTAGGATTTTTATCAAAAATGGTTATTGAATAATTAAATTGTAGGACTGCATCTACATAGGAAAGCTAGTGTACACAGACATTCAACTTTGTTTTTTGGATGTTGGATTTGATTCACCTTTTACTATTTGAAAGTTATGTTCCAGAAAAATAAACTTAACTGAGAGAGCCAGAGAGTTGAGCGAGAAAGGTGGGCATGGTGGTGTAGTAAAGAAGGTGTGAATGGGGTAAAGAGAGGCAAGAAGGGCAGTGCATCCGGGGGGAGGGTGTGTGTGTAAAATAAAGACGGGAGGCAATGCCGATGGAGGGAGAAGGAATGGGGTTCGAGAGGATTGTACTGAAGTGAAAGGAGGGGTATTATTTGTGAAATCATGTTATTCTTTAAGAAGAATGACTAGCTATTGCTTGATGTCGCCTAATCTACTACTCCATGCCAGTATACCTGTTGTTTCTTTCCATTTGCCATTTGTTGTGTCCAAAAATATGATCTTTTGTTAAATGAGAAGTCTCTGTTCCCATTTATTCAAACTAATAAAAACTTATATTACTTCAAATTTTTCGACATCTTACCAACCAATTGTTCCACTTTTCACATTTCTAACAATTGTCGAGAACACTGTCCTAGAAAACTCAACTTAGTAATCTATTCAAATGGTGCAGGATCTACTGTACAAATTCAGCATGATAACATAATTAAGGTTACAGATGCTTGTGATTATGTTATACCAACATGTTATGGTTTTTTTGGTCTCTATGCTTTTGCAGTGGACTAAGTTTTTTCGAACTTTTTGGCATCTTTCCAACCAACTGTTCCACTTTTGACATTCCTAACAGTTGTCTAGAACATTGTACTAGAAAACTCAATTTAGTAATCTATTCAAATGGTGCAGGTTCTACTGTATAAATTCAGCATGATAACATAGTCAAGGTTACAGATGCCTATGATTACATCTTTATACCAACATGTTATGGTTTTGGTCTCTATACTTTTGCAGTATACTAAGGTTTATTTATTCGACACAGCTTTTATAATTTGCTCATAACTCATTTTCTCCCTTCTCAGGACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCAT-TAAATGGAAATTTCTT</genome_strand>
        <mrna_strand>ATTCAATGGCAGAGGCCGTGGTTCTGCACCTGACAATGAGTCTGTAAATTCATTTGTCTATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACAATTTCTTGCCCGTCAAAAACATGCAAAGAAGTATATTCTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATTATTCATTATCTTATGCGTACGCTGCCAATATCTGTCAGTCAG.......................................................................................GCAATTAAAATTTTTTCTGATGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATTGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCTCCAACACCTGAGTGGAAAAGATCTTCTGAGCTTGATTTGAATGGTGATGCTATGCCTGATGACGATGACGATGGAGGTCCTACAGCTCCTTTGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATTATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGAAATTTTGCAGTTGGTTCT-TTGGTGTCTTTATAATTGTTGCATGGGAATTTATATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585682" ref_strand="+" ref_description="SGN-E585682 [68144]">
      <seq>gttaacttctagttagatttcttagtattaggactcatcattgatgagaagcgtgttgtcatatgagttttattctgttcaaggctttaagcaaataaaggctaactttatcacatcctcgctgaatgttatatcctattgaaaggaacttgatactaatatttatggcttctatgaggtttcacaatttcttgcccgtcagaaacatgcaaagaagtatattcttgtccattgcacacatgggcataatcgcactgggtttatgatcattcattatcttatgcgtacgctgccaatatctgtcagtcaggcaattaaagttttttctgatgctcgtcctcctgggatctataagccagactatatcgatgccctatatgccttctatcatgagaaaaaacctgaaatggttgtttgtccaccaacacctgagtggaaaaaatcttctgagcttgatttgaatggtgatgctatgccagatgacgatgatgatggaggtcctgcagctcctttgactgacaatcttgaagcacaagtagtaacctcaaatgatgacattttgggagatgcaagcccacaagatcagcaaaatcatttacgacagttctgttataaagcactgaaaatgaccccagggggtagaggccacaatttcctggctcacatccagtctctcttgacagggaaacacttgcagttattaaaggcagcgttattattatgccacttggaaggttgatgggacacggtatattgatgctgatcacagatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="77419" stop="83439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77719" g_stop="78029" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78030" i_stop="78116" i_length="87">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.379" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78117" g_stop="78323" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="517" r_length="207" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78324" i_stop="80879" i_length="2556">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80880" g_stop="80999" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="637" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222">
            <donor d_prob="0.091" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81222" g_stop="81268" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="683" r_length="46" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83052" g_stop="83139" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="775" r_length="92" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E585682" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77719" e_stop="78029"/>
          <exon e_start="78117" e_stop="78323"/>
          <exon e_start="80880" e_stop="80999"/>
          <exon e_start="81222" e_stop="81268"/>
          <exon e_start="83052" e_stop="83139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACCTCTAGTTAGGTTTTCTTAGTATTAGGACTTAGCATTGATGAGAAGCGTGTTGTCATATGTGTTTTACTCTGTTCAAGGCTTTAAGCAAATAAAGGCTAACTTTATCACATCTTCGCTGAATGTTATATCCTATTGAATGGAACTTGATACTAATATTTATGGCTTCTATGAGGTTTCACAATTTCTTGCCCGTCAGAAACATGCAAAGAAGTATATTCTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAGGTCAGTAATTTTGCGATACTACATCCTTCTTGCTTTAAACTTAACCACATATCTCTGAGTATGAATAATGAGAGTACTTCTATGCAGGCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACTGTATGTGCTTCTGCAAGAGAACTTTCCTCGTAGATATTGTTGAACTTTATTAGTGGTTGAAGTGTTTGATTTTTTCCTTCTCTGATGAAAGTGTAAGCCTTTAGTTGTTTTTCCTTCTCTGATAGAAATGCAAGCCTTCGGTTTCCACTTCTGTGGTGTTGAATTTGATTGAATGTGAACACTAAGCTATTCTAGTTGATCTCGATATTAGAATGAGAAACCTATCACTTTCTATCTTTCTGATACTTCTATGGTGAGAATTAGTGGAGCTTGATTTTGAGTGCAACATTAAGCTTGATTATGGAAATTGCCAATATATGACATTCCCAAGTTGTTTTGTCAATGGAGATTGTAAATGAGGAACTCTTGAGTAACGACCTTGCATACTTGGGATGCAAGGATTGCCACAGCTTTTTGAAGGCATGATTCCTAATCGGAGATTACTTGAATCAGGAAGGGCTGGTCATTAATGCCTCATGCCTGTCTAGGCTAGATGTATTGAACCACCTTATGCAAGTCTCCTTTCGTCAGCCATGAGACGTTCCCATGTATGGTCTTAATATTCACTTCCGTTTCGGTTTGATGAAATTTGTACCATAAAATGTTCATATGTTATTCTCAGAGTGAGGACTTCTTTTCCTTGGACTCCAACTAGTTTTTGTCAGGATATGAATCCTCTATATAATTTGCTTTATTGCACTCAATTTCATTTCAACTCTGGAGTGATAATTAAGAAAATGATCTCTTGTTCTCCTTTATCGTTCATTCCCCACCCAGCAACCCTTTATGAGTTAGCGGGTTAAGGGTGAAATAAGTAGCCAAAATTTAATGCTGAAGATTTTTGGGTCATATCTTCCGTTTTCTTAATGTCCGTCCTGGGTGGCTTAATGTGATGATAAAGGTTTCCTAGGATTGTTCTTTCTTGATTGAAAGAATTCTCCTATAAATTCTGAGAACTCTGTACTCCGCGAATTTCTTTCTTATTTGCATTTGAGTGTTTTTACCTCCATTGACAGCCTATTTTATCGCCTTTGGTCCCCCATCAATTTAGACACCCCCAAGAAGAATCTAGTTTTTTTTAAAAGCTTGACAAAGGTCGCTAAGCAGTGGTAGAAGAGATCTAACTTTTGCTTAGACTTAGAGAAAGCATAATATTTTCTAACTTGAAAAAGAGTCTCATAAAATTGTTTAAAAATACACATACTAAAATGGTGTCATATTCGCTGACCTTCTAGAAAGATCAACGAGGTTCACTCCACCAATCAAAGAAAGACGCACCCAAGAAGAAATCTAGTTTTTTCTTTAAAGTTCAATAGAAGTGGCTAAACAGTGCTAGAAGAGATCTGACTTTTGTTTAGACTTAGAGCAAGCATAATATAGAAAGATAAACGAAGCTCGTTCTCCTTTTCTCTAATCTTTTGCTTGGGAAAGAGCATTTTGATGTTTTGGTATATTCTATCATCACTCCTTCACTGCTTTTGAAGGTTTTGACGATTAGGATTTTTATCAAAAATGGTTATTGAATAATTAAATTGTAGGACTGCATCTACATAGGAAAGCTAGTGTACACAGACATTCAACTTTGTTTTTTGGATGTTGGATTTGATTCACCTTTTACTATTTGAAAGTTATGTTCCAGAAAAATAAACTTAACTGAGAGAGCCAGAGAGTTGAGCGAGAAAGGTGGGCATGGTGGTGTAGTAAAGAAGGTGTGAATGGGGTAAAGAGAGGCAAGAAGGGCAGTGCATCCGGGGGGAGGGTGTGTGTGTAAAATAAAGACGGGAGGCAATGCCGATGGAGGGAGAAGGAATGGGGTTCGAGAGGATTGTACTGAAGTGAAAGGAGGGGTATTATTTGTGAAATCATGTTATTCTTTAAGAAGAATGACTAGCTATTGCTTGATGTCGCCTAATCTACTACTCCATGCCAGTATACCTGTTGTTTCTTTCCATTTGCCATTTGTTGTGTCCAAAAATATGATCTTTTGTTAAATGAGAAGTCTCTGTTCCCATTTATTCAAACTAATAAAAACTTATATTACTTCAAATTTTTCGACATCTTACCAACCAATTGTTCCACTTTTCACATTTCTAACAATTGTCGAGAACACTGTCCTAGAAAACTCAACTTAGTAATCTATTCAAATGGTGCAGGATCTACTGTACAAATTCAGCATGATAACATAATTAAGGTTACAGATGCTTGTGATTATGTTATACCAACATGTTATGGTTTTTTTGGTCTCTATGCTTTTGCAGTGGACTAAGTTTTTTCGAACTTTTTGGCATCTTTCCAACCAACTGTTCCACTTTTGACATTCCTAACAGTTGTCTAGAACATTGTACTAGAAAACTCAATTTAGTAATCTATTCAAATGGTGCAGGTTCTACTGTATAAATTCAGCATGATAACATAGTCAAGGTTACAGATGCCTATGATTACATCTTTATACCAACATGTTATGGTTTTGGTCTCTATACTTTTGCAGTATACTAAGGTTTATTTATTCGACACAGCTTTTATAATTTGCTCATAACTCATTTTCTCCCTTCTCAGGACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAA-ACTTGCAGTTATT-AAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATA-TGATGCTGATCAC-GATGGAT</genome_strand>
        <mrna_strand>GTTAACTTCTAGTTA-GATTTCTTAGTATTAGGACTCATCATTGATGAGAAGCGTGTTGTCATATGAGTTTTATTCTGTTCAAGGCTTTAAGCAAATAAAGGCTAACTTTATCACATCCTCGCTGAATGTTATATCCTATTGAAAGGAACTTGATACTAATATTTATGGCTTCTATGAGGTTTCACAATTTCTTGCCCGTCAGAAACATGCAAAGAAGTATATTCTTGTCCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGTACGCTGCCAATATCTGTCAGTCAG.......................................................................................GCAATTAAAGTTTTTTCTGATGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCTATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAAGCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATAAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGG-CCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACACTTGCAGTTATTAAAGGCAGCGTTATTATTATGCCACTTGGAAGGTTGATGGGACACGGTATATTGATGCTGATCACAGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270850" ref_strand="+" ref_description="SGN-E270850 [cLEM-6-K4]">
      <seq>aaacatgcaaagaagtatattcttgttcattgcacacatgggcataatcgcactgggtttatgatcattcattatcttatgcgcacgctgccaatatctgtcagtcaggcaattaaaattttttctgacgctcgtcctcctgggatctataagccagactatatcgatgccctatatgccttctatcatgagaaaaaacctgaaatggttgtttgtccaccaacacctgagtggaaaaaatcttctgagcttgatttgaatggtgatgcaatgccagatgacgatgatgatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="77622" stop="78603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77922" g_stop="78029" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78030" i_stop="78116" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.379" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78117" g_stop="78303" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="295" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E270850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77922" e_stop="78029"/>
          <exon e_start="78117" e_stop="78303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGCAAAGAAGTATATTCTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAGGTCAGTAATTTTGCGATACTACATCCTTCTTGCTTTAAACTTAACCACATATCTCTGAGTATGAATAATGAGAGTACTTCTATGCAGGCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAG</genome_strand>
        <mrna_strand>AAACATGCAAAGAAGTATATTCTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAG.......................................................................................GCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412037" ref_strand="+" ref_description="SGN-E412037 [STM-15-L15]">
      <seq>cttgtccattgcacacatgggcataatcgcactgggtttatgatcattcattatcttatgcgtacgctgccaatatctgtcagtcaggcaattaaagttttttctgatgctcgtcctcctgggatctataagccagactatatcgatgccctatatgccttctatcatgagaaaaaacctgaaatggttgtttgtccaccaacacctgagtggaaaaaatcttctgagcttgatttgaatggtgatgctatgccagatgacgatgacgatggaggtcctgcagctcctttgactgacaatcttgaagcacaagtagtaacctcaaatgatgacattttgggagatgcaatcccacaagatcagcaaaatcatttacgacagttctgttataaagcactgaaaatgaccccagggggtagaggcccgcaatttcctggctcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgccacttggaaggctgatgggacacggtatatgatgctgatcacgatggatggttgtttcttaattgataggcatttcaacttccggagggttcagatgagatttccttgcagacacactaatgaangtttagccgaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcctgacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="77643" stop="83709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77943" g_stop="78029" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78030" i_stop="78116" i_length="87">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.379" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78117" g_stop="78323" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="294" r_length="207" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78324" i_stop="80879" i_length="2556">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80880" g_stop="80999" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="414" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222">
            <donor d_prob="0.091" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81222" g_stop="81268" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="461" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83052" g_stop="83214" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="624" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122">
            <donor d_prob="0.622" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83337" g_stop="83409" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="697" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E412037" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77943" e_stop="78029"/>
          <exon e_start="78117" e_stop="78323"/>
          <exon e_start="80880" e_stop="80999"/>
          <exon e_start="81222" e_stop="81268"/>
          <exon e_start="83052" e_stop="83214"/>
          <exon e_start="83337" e_stop="83409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAGGTCAGTAATTTTGCGATACTACATCCTTCTTGCTTTAAACTTAACCACATATCTCTGAGTATGAATAATGAGAGTACTTCTATGCAGGCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACTGTATGTGCTTCTGCAAGAGAACTTTCCTCGTAGATATTGTTGAACTTTATTAGTGGTTGAAGTGTTTGATTTTTTCCTTCTCTGATGAAAGTGTAAGCCTTTAGTTGTTTTTCCTTCTCTGATAGAAATGCAAGCCTTCGGTTTCCACTTCTGTGGTGTTGAATTTGATTGAATGTGAACACTAAGCTATTCTAGTTGATCTCGATATTAGAATGAGAAACCTATCACTTTCTATCTTTCTGATACTTCTATGGTGAGAATTAGTGGAGCTTGATTTTGAGTGCAACATTAAGCTTGATTATGGAAATTGCCAATATATGACATTCCCAAGTTGTTTTGTCAATGGAGATTGTAAATGAGGAACTCTTGAGTAACGACCTTGCATACTTGGGATGCAAGGATTGCCACAGCTTTTTGAAGGCATGATTCCTAATCGGAGATTACTTGAATCAGGAAGGGCTGGTCATTAATGCCTCATGCCTGTCTAGGCTAGATGTATTGAACCACCTTATGCAAGTCTCCTTTCGTCAGCCATGAGACGTTCCCATGTATGGTCTTAATATTCACTTCCGTTTCGGTTTGATGAAATTTGTACCATAAAATGTTCATATGTTATTCTCAGAGTGAGGACTTCTTTTCCTTGGACTCCAACTAGTTTTTGTCAGGATATGAATCCTCTATATAATTTGCTTTATTGCACTCAATTTCATTTCAACTCTGGAGTGATAATTAAGAAAATGATCTCTTGTTCTCCTTTATCGTTCATTCCCCACCCAGCAACCCTTTATGAGTTAGCGGGTTAAGGGTGAAATAAGTAGCCAAAATTTAATGCTGAAGATTTTTGGGTCATATCTTCCGTTTTCTTAATGTCCGTCCTGGGTGGCTTAATGTGATGATAAAGGTTTCCTAGGATTGTTCTTTCTTGATTGAAAGAATTCTCCTATAAATTCTGAGAACTCTGTACTCCGCGAATTTCTTTCTTATTTGCATTTGAGTGTTTTTACCTCCATTGACAGCCTATTTTATCGCCTTTGGTCCCCCATCAATTTAGACACCCCCAAGAAGAATCTAGTTTTTTTTAAAAGCTTGACAAAGGTCGCTAAGCAGTGGTAGAAGAGATCTAACTTTTGCTTAGACTTAGAGAAAGCATAATATTTTCTAACTTGAAAAAGAGTCTCATAAAATTGTTTAAAAATACACATACTAAAATGGTGTCATATTCGCTGACCTTCTAGAAAGATCAACGAGGTTCACTCCACCAATCAAAGAAAGACGCACCCAAGAAGAAATCTAGTTTTTTCTTTAAAGTTCAATAGAAGTGGCTAAACAGTGCTAGAAGAGATCTGACTTTTGTTTAGACTTAGAGCAAGCATAATATAGAAAGATAAACGAAGCTCGTTCTCCTTTTCTCTAATCTTTTGCTTGGGAAAGAGCATTTTGATGTTTTGGTATATTCTATCATCACTCCTTCACTGCTTTTGAAGGTTTTGACGATTAGGATTTTTATCAAAAATGGTTATTGAATAATTAAATTGTAGGACTGCATCTACATAGGAAAGCTAGTGTACACAGACATTCAACTTTGTTTTTTGGATGTTGGATTTGATTCACCTTTTACTATTTGAAAGTTATGTTCCAGAAAAATAAACTTAACTGAGAGAGCCAGAGAGTTGAGCGAGAAAGGTGGGCATGGTGGTGTAGTAAAGAAGGTGTGAATGGGGTAAAGAGAGGCAAGAAGGGCAGTGCATCCGGGGGGAGGGTGTGTGTGTAAAATAAAGACGGGAGGCAATGCCGATGGAGGGAGAAGGAATGGGGTTCGAGAGGATTGTACTGAAGTGAAAGGAGGGGTATTATTTGTGAAATCATGTTATTCTTTAAGAAGAATGACTAGCTATTGCTTGATGTCGCCTAATCTACTACTCCATGCCAGTATACCTGTTGTTTCTTTCCATTTGCCATTTGTTGTGTCCAAAAATATGATCTTTTGTTAAATGAGAAGTCTCTGTTCCCATTTATTCAAACTAATAAAAACTTATATTACTTCAAATTTTTCGACATCTTACCAACCAATTGTTCCACTTTTCACATTTCTAACAATTGTCGAGAACACTGTCCTAGAAAACTCAACTTAGTAATCTATTCAAATGGTGCAGGATCTACTGTACAAATTCAGCATGATAACATAATTAAGGTTACAGATGCTTGTGATTATGTTATACCAACATGTTATGGTTTTTTTGGTCTCTATGCTTTTGCAGTGGACTAAGTTTTTTCGAACTTTTTGGCATCTTTCCAACCAACTGTTCCACTTTTGACATTCCTAACAGTTGTCTAGAACATTGTACTAGAAAACTCAATTTAGTAATCTATTCAAATGGTGCAGGTTCTACTGTATAAATTCAGCATGATAACATAGTCAAGGTTACAGATGCCTATGATTACATCTTTATACCAACATGTTATGGTTTTGGTCTCTATACTTTTGCAGTATACTAAGGTTTATTTATTCGACACAGCTTTTATAATTTGCTCATAACTCATTTTCTCCCTTCTCAGGACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACAC</genome_strand>
        <mrna_strand>CTTGTCCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGTACGCTGCCAATATCTGTCAGTCAG.......................................................................................GCAATTAAAGTTTTTTCTGATGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCTATGCCAGATGACGATGACGATGGAGGTCCTGCAGCTCCTTTGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATAAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGGCCCGCAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTCCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................NGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469977" ref_strand="+" ref_description="SGN-E469977 [cSTB-16-G13]">
      <seq>cttgtccattgcacacatgggcataatcgcactgggtttatgatcattcattatcttatgcgtacgctgccaatatctgtcagtcaggcaattaaagttttttctgatgctcgtcctcctgggatctataagccagactatatcgatgccctatatgccttctatcatgagaaaaaacctgaaatggttgtttgtccaccaacacctgagtggaaaaaatcttctgagcttgatttgaatggtgatgctatgccagatgacgatgacgatggaggtcctgcagctcctttgactgacaatcttgaagcacaagtagtaacctcaaatgatgacattttgggagatgcaatcccacaagatcagcaaaatcatttacgacagttctgttataaagcactgaaaatgaccccagggggtagaggcccgcaatttcctggctcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgccacttggaaggctgatgggacacggtatatgatgctgatcacgatggatggttgtttcttaattgataggcatttcaacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="77643" stop="83473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77943" g_stop="78029" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78030" i_stop="78116" i_length="87">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.379" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78117" g_stop="78323" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="294" r_length="207" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78324" i_stop="80879" i_length="2556">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80880" g_stop="80999" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="414" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222">
            <donor d_prob="0.091" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81222" g_stop="81268" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="461" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83052" g_stop="83173" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="583" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E469977" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77943" e_stop="78029"/>
          <exon e_start="78117" e_stop="78323"/>
          <exon e_start="80880" e_stop="80999"/>
          <exon e_start="81222" e_stop="81268"/>
          <exon e_start="83052" e_stop="83173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAGGTCAGTAATTTTGCGATACTACATCCTTCTTGCTTTAAACTTAACCACATATCTCTGAGTATGAATAATGAGAGTACTTCTATGCAGGCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACTGTATGTGCTTCTGCAAGAGAACTTTCCTCGTAGATATTGTTGAACTTTATTAGTGGTTGAAGTGTTTGATTTTTTCCTTCTCTGATGAAAGTGTAAGCCTTTAGTTGTTTTTCCTTCTCTGATAGAAATGCAAGCCTTCGGTTTCCACTTCTGTGGTGTTGAATTTGATTGAATGTGAACACTAAGCTATTCTAGTTGATCTCGATATTAGAATGAGAAACCTATCACTTTCTATCTTTCTGATACTTCTATGGTGAGAATTAGTGGAGCTTGATTTTGAGTGCAACATTAAGCTTGATTATGGAAATTGCCAATATATGACATTCCCAAGTTGTTTTGTCAATGGAGATTGTAAATGAGGAACTCTTGAGTAACGACCTTGCATACTTGGGATGCAAGGATTGCCACAGCTTTTTGAAGGCATGATTCCTAATCGGAGATTACTTGAATCAGGAAGGGCTGGTCATTAATGCCTCATGCCTGTCTAGGCTAGATGTATTGAACCACCTTATGCAAGTCTCCTTTCGTCAGCCATGAGACGTTCCCATGTATGGTCTTAATATTCACTTCCGTTTCGGTTTGATGAAATTTGTACCATAAAATGTTCATATGTTATTCTCAGAGTGAGGACTTCTTTTCCTTGGACTCCAACTAGTTTTTGTCAGGATATGAATCCTCTATATAATTTGCTTTATTGCACTCAATTTCATTTCAACTCTGGAGTGATAATTAAGAAAATGATCTCTTGTTCTCCTTTATCGTTCATTCCCCACCCAGCAACCCTTTATGAGTTAGCGGGTTAAGGGTGAAATAAGTAGCCAAAATTTAATGCTGAAGATTTTTGGGTCATATCTTCCGTTTTCTTAATGTCCGTCCTGGGTGGCTTAATGTGATGATAAAGGTTTCCTAGGATTGTTCTTTCTTGATTGAAAGAATTCTCCTATAAATTCTGAGAACTCTGTACTCCGCGAATTTCTTTCTTATTTGCATTTGAGTGTTTTTACCTCCATTGACAGCCTATTTTATCGCCTTTGGTCCCCCATCAATTTAGACACCCCCAAGAAGAATCTAGTTTTTTTTAAAAGCTTGACAAAGGTCGCTAAGCAGTGGTAGAAGAGATCTAACTTTTGCTTAGACTTAGAGAAAGCATAATATTTTCTAACTTGAAAAAGAGTCTCATAAAATTGTTTAAAAATACACATACTAAAATGGTGTCATATTCGCTGACCTTCTAGAAAGATCAACGAGGTTCACTCCACCAATCAAAGAAAGACGCACCCAAGAAGAAATCTAGTTTTTTCTTTAAAGTTCAATAGAAGTGGCTAAACAGTGCTAGAAGAGATCTGACTTTTGTTTAGACTTAGAGCAAGCATAATATAGAAAGATAAACGAAGCTCGTTCTCCTTTTCTCTAATCTTTTGCTTGGGAAAGAGCATTTTGATGTTTTGGTATATTCTATCATCACTCCTTCACTGCTTTTGAAGGTTTTGACGATTAGGATTTTTATCAAAAATGGTTATTGAATAATTAAATTGTAGGACTGCATCTACATAGGAAAGCTAGTGTACACAGACATTCAACTTTGTTTTTTGGATGTTGGATTTGATTCACCTTTTACTATTTGAAAGTTATGTTCCAGAAAAATAAACTTAACTGAGAGAGCCAGAGAGTTGAGCGAGAAAGGTGGGCATGGTGGTGTAGTAAAGAAGGTGTGAATGGGGTAAAGAGAGGCAAGAAGGGCAGTGCATCCGGGGGGAGGGTGTGTGTGTAAAATAAAGACGGGAGGCAATGCCGATGGAGGGAGAAGGAATGGGGTTCGAGAGGATTGTACTGAAGTGAAAGGAGGGGTATTATTTGTGAAATCATGTTATTCTTTAAGAAGAATGACTAGCTATTGCTTGATGTCGCCTAATCTACTACTCCATGCCAGTATACCTGTTGTTTCTTTCCATTTGCCATTTGTTGTGTCCAAAAATATGATCTTTTGTTAAATGAGAAGTCTCTGTTCCCATTTATTCAAACTAATAAAAACTTATATTACTTCAAATTTTTCGACATCTTACCAACCAATTGTTCCACTTTTCACATTTCTAACAATTGTCGAGAACACTGTCCTAGAAAACTCAACTTAGTAATCTATTCAAATGGTGCAGGATCTACTGTACAAATTCAGCATGATAACATAATTAAGGTTACAGATGCTTGTGATTATGTTATACCAACATGTTATGGTTTTTTTGGTCTCTATGCTTTTGCAGTGGACTAAGTTTTTTCGAACTTTTTGGCATCTTTCCAACCAACTGTTCCACTTTTGACATTCCTAACAGTTGTCTAGAACATTGTACTAGAAAACTCAATTTAGTAATCTATTCAAATGGTGCAGGTTCTACTGTATAAATTCAGCATGATAACATAGTCAAGGTTACAGATGCCTATGATTACATCTTTATACCAACATGTTATGGTTTTGGTCTCTATACTTTTGCAGTATACTAAGGTTTATTTATTCGACACAGCTTTTATAATTTGCTCATAACTCATTTTCTCCCTTCTCAGGACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTC</genome_strand>
        <mrna_strand>CTTGTCCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGTACGCTGCCAATATCTGTCAGTCAG.......................................................................................GCAATTAAAGTTTTTTCTGATGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCTATGCCAGATGACGATGACGATGGAGGTCCTGCAGCTCCTTTGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATAAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGGCCCGCAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367293" ref_strand="+" ref_description="SGN-E367293 [cLPT-5-D22]">
      <seq>ttgttcattgcacacatgggcataatcgcactgggtttatgatcattcattatcttatgcgcacgctgccaatatctgtcagtcaggcaattaaaattttttctgacgctcgtcctcctggaatctataagccagactatatcgatgccctatatgccttctatcatgagaaaaaacctgaaatggttgtttgtccaccaacacctgagtggaaaaaatcttctgagcttgatttgaatggtgatgcaatgccagatgacgatgatgatggaggtcctgcagctcctttgactgacaatcttgaagcacaagtagtaacctcaaatgatgacattttgggagatgcaatcccacaagatcagcaaaatcatttacgacagttctgttatcaagcactgaaaatgaccccagggggtagaggcccacaatttcctggctcacatgcagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgccacttggaaggctgatgggacacggtatatgatgctgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="77644" stop="83431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77944" g_stop="78029" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78030" i_stop="78116" i_length="87">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.379" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78117" g_stop="78323" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="293" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78324" i_stop="80879" i_length="2556">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80880" g_stop="80999" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="413" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222">
            <donor d_prob="0.091" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81222" g_stop="81268" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="460" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83052" g_stop="83131" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="540" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E367293" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77944" e_stop="78029"/>
          <exon e_start="78117" e_stop="78323"/>
          <exon e_start="80880" e_stop="80999"/>
          <exon e_start="81222" e_stop="81268"/>
          <exon e_start="83052" e_stop="83131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAGGTCAGTAATTTTGCGATACTACATCCTTCTTGCTTTAAACTTAACCACATATCTCTGAGTATGAATAATGAGAGTACTTCTATGCAGGCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACTGTATGTGCTTCTGCAAGAGAACTTTCCTCGTAGATATTGTTGAACTTTATTAGTGGTTGAAGTGTTTGATTTTTTCCTTCTCTGATGAAAGTGTAAGCCTTTAGTTGTTTTTCCTTCTCTGATAGAAATGCAAGCCTTCGGTTTCCACTTCTGTGGTGTTGAATTTGATTGAATGTGAACACTAAGCTATTCTAGTTGATCTCGATATTAGAATGAGAAACCTATCACTTTCTATCTTTCTGATACTTCTATGGTGAGAATTAGTGGAGCTTGATTTTGAGTGCAACATTAAGCTTGATTATGGAAATTGCCAATATATGACATTCCCAAGTTGTTTTGTCAATGGAGATTGTAAATGAGGAACTCTTGAGTAACGACCTTGCATACTTGGGATGCAAGGATTGCCACAGCTTTTTGAAGGCATGATTCCTAATCGGAGATTACTTGAATCAGGAAGGGCTGGTCATTAATGCCTCATGCCTGTCTAGGCTAGATGTATTGAACCACCTTATGCAAGTCTCCTTTCGTCAGCCATGAGACGTTCCCATGTATGGTCTTAATATTCACTTCCGTTTCGGTTTGATGAAATTTGTACCATAAAATGTTCATATGTTATTCTCAGAGTGAGGACTTCTTTTCCTTGGACTCCAACTAGTTTTTGTCAGGATATGAATCCTCTATATAATTTGCTTTATTGCACTCAATTTCATTTCAACTCTGGAGTGATAATTAAGAAAATGATCTCTTGTTCTCCTTTATCGTTCATTCCCCACCCAGCAACCCTTTATGAGTTAGCGGGTTAAGGGTGAAATAAGTAGCCAAAATTTAATGCTGAAGATTTTTGGGTCATATCTTCCGTTTTCTTAATGTCCGTCCTGGGTGGCTTAATGTGATGATAAAGGTTTCCTAGGATTGTTCTTTCTTGATTGAAAGAATTCTCCTATAAATTCTGAGAACTCTGTACTCCGCGAATTTCTTTCTTATTTGCATTTGAGTGTTTTTACCTCCATTGACAGCCTATTTTATCGCCTTTGGTCCCCCATCAATTTAGACACCCCCAAGAAGAATCTAGTTTTTTTTAAAAGCTTGACAAAGGTCGCTAAGCAGTGGTAGAAGAGATCTAACTTTTGCTTAGACTTAGAGAAAGCATAATATTTTCTAACTTGAAAAAGAGTCTCATAAAATTGTTTAAAAATACACATACTAAAATGGTGTCATATTCGCTGACCTTCTAGAAAGATCAACGAGGTTCACTCCACCAATCAAAGAAAGACGCACCCAAGAAGAAATCTAGTTTTTTCTTTAAAGTTCAATAGAAGTGGCTAAACAGTGCTAGAAGAGATCTGACTTTTGTTTAGACTTAGAGCAAGCATAATATAGAAAGATAAACGAAGCTCGTTCTCCTTTTCTCTAATCTTTTGCTTGGGAAAGAGCATTTTGATGTTTTGGTATATTCTATCATCACTCCTTCACTGCTTTTGAAGGTTTTGACGATTAGGATTTTTATCAAAAATGGTTATTGAATAATTAAATTGTAGGACTGCATCTACATAGGAAAGCTAGTGTACACAGACATTCAACTTTGTTTTTTGGATGTTGGATTTGATTCACCTTTTACTATTTGAAAGTTATGTTCCAGAAAAATAAACTTAACTGAGAGAGCCAGAGAGTTGAGCGAGAAAGGTGGGCATGGTGGTGTAGTAAAGAAGGTGTGAATGGGGTAAAGAGAGGCAAGAAGGGCAGTGCATCCGGGGGGAGGGTGTGTGTGTAAAATAAAGACGGGAGGCAATGCCGATGGAGGGAGAAGGAATGGGGTTCGAGAGGATTGTACTGAAGTGAAAGGAGGGGTATTATTTGTGAAATCATGTTATTCTTTAAGAAGAATGACTAGCTATTGCTTGATGTCGCCTAATCTACTACTCCATGCCAGTATACCTGTTGTTTCTTTCCATTTGCCATTTGTTGTGTCCAAAAATATGATCTTTTGTTAAATGAGAAGTCTCTGTTCCCATTTATTCAAACTAATAAAAACTTATATTACTTCAAATTTTTCGACATCTTACCAACCAATTGTTCCACTTTTCACATTTCTAACAATTGTCGAGAACACTGTCCTAGAAAACTCAACTTAGTAATCTATTCAAATGGTGCAGGATCTACTGTACAAATTCAGCATGATAACATAATTAAGGTTACAGATGCTTGTGATTATGTTATACCAACATGTTATGGTTTTTTTGGTCTCTATGCTTTTGCAGTGGACTAAGTTTTTTCGAACTTTTTGGCATCTTTCCAACCAACTGTTCCACTTTTGACATTCCTAACAGTTGTCTAGAACATTGTACTAGAAAACTCAATTTAGTAATCTATTCAAATGGTGCAGGTTCTACTGTATAAATTCAGCATGATAACATAGTCAAGGTTACAGATGCCTATGATTACATCTTTATACCAACATGTTATGGTTTTGGTCTCTATACTTTTGCAGTATACTAAGGTTTATTTATTCGACACAGCTTTTATAATTTGCTCATAACTCATTTTCTCCCTTCTCAGGACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCA</genome_strand>
        <mrna_strand>TTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAG.......................................................................................GCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGAATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGGCCCACAATTTCCTGGCTCACATGCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585826" ref_strand="+" ref_description="SGN-E585826 [68290]">
      <seq>ctgggatctataagccagactatatcgatgccctatatgccttctatcatgagaaaaaacctgaaatggttgtttgtcctccaacacctgagtggaaaagatcttctgagcttgatttgaatggtgatgctatgcctgatgacgatgacgatggaggtcctacagctcctttgactgacaatcttgaagcacaagtagtaacctcaaatgatgacattttgggagatgcaatcccacaagatcagcaaaattatttacgacagttctgttatcaagcactgaaaatgaccccagggggtagaggtccacaatttcctggttcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgctacatggaaggctgatgggacacggtacatgatgctgatcacgatggatggctgtttcttaattgataggcatttcaacttccggagggttcagatgagatttccttgcagacacactaatgaaggtttagctgaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcccgacacacagaagcaggaaaaggagatacctaatttatgatatgatggccctgaaccatgtatctggtcattgagcgacccttttatgaacggtggagaatgatcgaccaaagaagtgattggtccaaggaatttatgaacgtcaacatatatacccaggagtagaaacccttactatagatatgagttggagccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="77848" stop="84024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78148" g_stop="78323" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78324" i_stop="80879" i_length="2556">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80880" g_stop="80999" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="296" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222">
            <donor d_prob="0.091" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81222" g_stop="81268" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="343" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83052" g_stop="83214" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="506" r_length="163" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122">
            <donor d_prob="0.622" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83337" g_stop="83474" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="646" r_length="140" r_score="0.913"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="0.84"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83606" g_stop="83724" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="769" r_length="123" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E585826" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78148" e_stop="78323"/>
          <exon e_start="80880" e_stop="80999"/>
          <exon e_start="81222" e_stop="81268"/>
          <exon e_start="83052" e_stop="83214"/>
          <exon e_start="83337" e_stop="83474"/>
          <exon e_start="83606" e_stop="83724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACTGTATGTGCTTCTGCAAGAGAACTTTCCTCGTAGATATTGTTGAACTTTATTAGTGGTTGAAGTGTTTGATTTTTTCCTTCTCTGATGAAAGTGTAAGCCTTTAGTTGTTTTTCCTTCTCTGATAGAAATGCAAGCCTTCGGTTTCCACTTCTGTGGTGTTGAATTTGATTGAATGTGAACACTAAGCTATTCTAGTTGATCTCGATATTAGAATGAGAAACCTATCACTTTCTATCTTTCTGATACTTCTATGGTGAGAATTAGTGGAGCTTGATTTTGAGTGCAACATTAAGCTTGATTATGGAAATTGCCAATATATGACATTCCCAAGTTGTTTTGTCAATGGAGATTGTAAATGAGGAACTCTTGAGTAACGACCTTGCATACTTGGGATGCAAGGATTGCCACAGCTTTTTGAAGGCATGATTCCTAATCGGAGATTACTTGAATCAGGAAGGGCTGGTCATTAATGCCTCATGCCTGTCTAGGCTAGATGTATTGAACCACCTTATGCAAGTCTCCTTTCGTCAGCCATGAGACGTTCCCATGTATGGTCTTAATATTCACTTCCGTTTCGGTTTGATGAAATTTGTACCATAAAATGTTCATATGTTATTCTCAGAGTGAGGACTTCTTTTCCTTGGACTCCAACTAGTTTTTGTCAGGATATGAATCCTCTATATAATTTGCTTTATTGCACTCAATTTCATTTCAACTCTGGAGTGATAATTAAGAAAATGATCTCTTGTTCTCCTTTATCGTTCATTCCCCACCCAGCAACCCTTTATGAGTTAGCGGGTTAAGGGTGAAATAAGTAGCCAAAATTTAATGCTGAAGATTTTTGGGTCATATCTTCCGTTTTCTTAATGTCCGTCCTGGGTGGCTTAATGTGATGATAAAGGTTTCCTAGGATTGTTCTTTCTTGATTGAAAGAATTCTCCTATAAATTCTGAGAACTCTGTACTCCGCGAATTTCTTTCTTATTTGCATTTGAGTGTTTTTACCTCCATTGACAGCCTATTTTATCGCCTTTGGTCCCCCATCAATTTAGACACCCCCAAGAAGAATCTAGTTTTTTTTAAAAGCTTGACAAAGGTCGCTAAGCAGTGGTAGAAGAGATCTAACTTTTGCTTAGACTTAGAGAAAGCATAATATTTTCTAACTTGAAAAAGAGTCTCATAAAATTGTTTAAAAATACACATACTAAAATGGTGTCATATTCGCTGACCTTCTAGAAAGATCAACGAGGTTCACTCCACCAATCAAAGAAAGACGCACCCAAGAAGAAATCTAGTTTTTTCTTTAAAGTTCAATAGAAGTGGCTAAACAGTGCTAGAAGAGATCTGACTTTTGTTTAGACTTAGAGCAAGCATAATATAGAAAGATAAACGAAGCTCGTTCTCCTTTTCTCTAATCTTTTGCTTGGGAAAGAGCATTTTGATGTTTTGGTATATTCTATCATCACTCCTTCACTGCTTTTGAAGGTTTTGACGATTAGGATTTTTATCAAAAATGGTTATTGAATAATTAAATTGTAGGACTGCATCTACATAGGAAAGCTAGTGTACACAGACATTCAACTTTGTTTTTTGGATGTTGGATTTGATTCACCTTTTACTATTTGAAAGTTATGTTCCAGAAAAATAAACTTAACTGAGAGAGCCAGAGAGTTGAGCGAGAAAGGTGGGCATGGTGGTGTAGTAAAGAAGGTGTGAATGGGGTAAAGAGAGGCAAGAAGGGCAGTGCATCCGGGGGGAGGGTGTGTGTGTAAAATAAAGACGGGAGGCAATGCCGATGGAGGGAGAAGGAATGGGGTTCGAGAGGATTGTACTGAAGTGAAAGGAGGGGTATTATTTGTGAAATCATGTTATTCTTTAAGAAGAATGACTAGCTATTGCTTGATGTCGCCTAATCTACTACTCCATGCCAGTATACCTGTTGTTTCTTTCCATTTGCCATTTGTTGTGTCCAAAAATATGATCTTTTGTTAAATGAGAAGTCTCTGTTCCCATTTATTCAAACTAATAAAAACTTATATTACTTCAAATTTTTCGACATCTTACCAACCAATTGTTCCACTTTTCACATTTCTAACAATTGTCGAGAACACTGTCCTAGAAAACTCAACTTAGTAATCTATTCAAATGGTGCAGGATCTACTGTACAAATTCAGCATGATAACATAATTAAGGTTACAGATGCTTGTGATTATGTTATACCAACATGTTATGGTTTTTTTGGTCTCTATGCTTTTGCAGTGGACTAAGTTTTTTCGAACTTTTTGGCATCTTTCCAACCAACTGTTCCACTTTTGACATTCCTAACAGTTGTCTAGAACATTGTACTAGAAAACTCAATTTAGTAATCTATTCAAATGGTGCAGGTTCTACTGTATAAATTCAGCATGATAACATAGTCAAGGTTACAGATGCCTATGATTACATCTTTATACCAACATGTTATGGTTTTGGTCTCTATACTTTTGCAGTATACTAAGGTTTATTTATTCGACACAGCTTTTATAATTTGCTCATAACTCATTTTCTCCCTTCTCAGGACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGG-AAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCT-GTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGA-CAAAGAAGTGATTGGTCCAAGGAA-TTATGAACGTCAACATATATA-CCA-GAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTT</genome_strand>
        <mrna_strand>CTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCTCCAACACCTGAGTGGAAAAGATCTTCTGAGCTTGATTTGAATGGTGATGCTATGCCTGATGACGATGACGATGGAGGTCCTACAGCTCCTTTGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATTATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGGTCCACAATTTCCTGGTTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCTACATGGAAGGCTGATGGGACACGGTACATGATGCTGATCACGATGGATGGCTGTTTCTTAATTGATAGGCATTTCAACTTCCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCTGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCCGACACACAGAAGCAGGAAAAGGAGATACCTAATTTATGATATGATGGCCCTGAACCATGTATCTGGTCATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACCAAAGAAGTGATTGGTCCAAGGAATTTATGAACGTCAACATATATACCCAGGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585825" ref_strand="+" ref_description="SGN-E585825 [68289]">
      <seq>ctgggatctataagccagactatatcgatgccctatatgccttctatcatgagaaaaaacctgaaatggttgtttgtcctccaacacctgagtggaaaagatcttctgagcttgatttgaatggtgatgctatgcctgatgacgatgacgatggaggtcctacagctcctttgactgacaatcttgaagcacaagtagtaacctcaaatgatgacattttgggagatgcaatcccacaagatcagcaaaattatttacgacagttctgttatcaagcactgaaaatgaccccagggggtagaggtccacaatttcctggttcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgctacatggaaggctgatgggacacggtacatgatgctgatcacgatggatggctgtttcttaattgataggcatttcaacttccggagggttcagatgagatttccttgcagacacactaatgaaggtttagctgaaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcccgacacacagaagcaggaaaggagatactaattaatgatatgatggccctgaaccatgtatctgtccattgaggcgaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="77848" stop="83775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78148" g_stop="78323" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78324" i_stop="80879" i_length="2556">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80880" g_stop="80999" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="296" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222">
            <donor d_prob="0.091" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81222" g_stop="81268" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="343" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83052" g_stop="83214" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="506" r_length="163" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122">
            <donor d_prob="0.622" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83337" g_stop="83474" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="645" r_length="139" r_score="0.899"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="0.80"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83606" g_stop="83612" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="653" r_length="8" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E585825" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78148" e_stop="78323"/>
          <exon e_start="80880" e_stop="80999"/>
          <exon e_start="81222" e_stop="81268"/>
          <exon e_start="83052" e_stop="83214"/>
          <exon e_start="83337" e_stop="83474"/>
          <exon e_start="83606" e_stop="83612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACTGTATGTGCTTCTGCAAGAGAACTTTCCTCGTAGATATTGTTGAACTTTATTAGTGGTTGAAGTGTTTGATTTTTTCCTTCTCTGATGAAAGTGTAAGCCTTTAGTTGTTTTTCCTTCTCTGATAGAAATGCAAGCCTTCGGTTTCCACTTCTGTGGTGTTGAATTTGATTGAATGTGAACACTAAGCTATTCTAGTTGATCTCGATATTAGAATGAGAAACCTATCACTTTCTATCTTTCTGATACTTCTATGGTGAGAATTAGTGGAGCTTGATTTTGAGTGCAACATTAAGCTTGATTATGGAAATTGCCAATATATGACATTCCCAAGTTGTTTTGTCAATGGAGATTGTAAATGAGGAACTCTTGAGTAACGACCTTGCATACTTGGGATGCAAGGATTGCCACAGCTTTTTGAAGGCATGATTCCTAATCGGAGATTACTTGAATCAGGAAGGGCTGGTCATTAATGCCTCATGCCTGTCTAGGCTAGATGTATTGAACCACCTTATGCAAGTCTCCTTTCGTCAGCCATGAGACGTTCCCATGTATGGTCTTAATATTCACTTCCGTTTCGGTTTGATGAAATTTGTACCATAAAATGTTCATATGTTATTCTCAGAGTGAGGACTTCTTTTCCTTGGACTCCAACTAGTTTTTGTCAGGATATGAATCCTCTATATAATTTGCTTTATTGCACTCAATTTCATTTCAACTCTGGAGTGATAATTAAGAAAATGATCTCTTGTTCTCCTTTATCGTTCATTCCCCACCCAGCAACCCTTTATGAGTTAGCGGGTTAAGGGTGAAATAAGTAGCCAAAATTTAATGCTGAAGATTTTTGGGTCATATCTTCCGTTTTCTTAATGTCCGTCCTGGGTGGCTTAATGTGATGATAAAGGTTTCCTAGGATTGTTCTTTCTTGATTGAAAGAATTCTCCTATAAATTCTGAGAACTCTGTACTCCGCGAATTTCTTTCTTATTTGCATTTGAGTGTTTTTACCTCCATTGACAGCCTATTTTATCGCCTTTGGTCCCCCATCAATTTAGACACCCCCAAGAAGAATCTAGTTTTTTTTAAAAGCTTGACAAAGGTCGCTAAGCAGTGGTAGAAGAGATCTAACTTTTGCTTAGACTTAGAGAAAGCATAATATTTTCTAACTTGAAAAAGAGTCTCATAAAATTGTTTAAAAATACACATACTAAAATGGTGTCATATTCGCTGACCTTCTAGAAAGATCAACGAGGTTCACTCCACCAATCAAAGAAAGACGCACCCAAGAAGAAATCTAGTTTTTTCTTTAAAGTTCAATAGAAGTGGCTAAACAGTGCTAGAAGAGATCTGACTTTTGTTTAGACTTAGAGCAAGCATAATATAGAAAGATAAACGAAGCTCGTTCTCCTTTTCTCTAATCTTTTGCTTGGGAAAGAGCATTTTGATGTTTTGGTATATTCTATCATCACTCCTTCACTGCTTTTGAAGGTTTTGACGATTAGGATTTTTATCAAAAATGGTTATTGAATAATTAAATTGTAGGACTGCATCTACATAGGAAAGCTAGTGTACACAGACATTCAACTTTGTTTTTTGGATGTTGGATTTGATTCACCTTTTACTATTTGAAAGTTATGTTCCAGAAAAATAAACTTAACTGAGAGAGCCAGAGAGTTGAGCGAGAAAGGTGGGCATGGTGGTGTAGTAAAGAAGGTGTGAATGGGGTAAAGAGAGGCAAGAAGGGCAGTGCATCCGGGGGGAGGGTGTGTGTGTAAAATAAAGACGGGAGGCAATGCCGATGGAGGGAGAAGGAATGGGGTTCGAGAGGATTGTACTGAAGTGAAAGGAGGGGTATTATTTGTGAAATCATGTTATTCTTTAAGAAGAATGACTAGCTATTGCTTGATGTCGCCTAATCTACTACTCCATGCCAGTATACCTGTTGTTTCTTTCCATTTGCCATTTGTTGTGTCCAAAAATATGATCTTTTGTTAAATGAGAAGTCTCTGTTCCCATTTATTCAAACTAATAAAAACTTATATTACTTCAAATTTTTCGACATCTTACCAACCAATTGTTCCACTTTTCACATTTCTAACAATTGTCGAGAACACTGTCCTAGAAAACTCAACTTAGTAATCTATTCAAATGGTGCAGGATCTACTGTACAAATTCAGCATGATAACATAATTAAGGTTACAGATGCTTGTGATTATGTTATACCAACATGTTATGGTTTTTTTGGTCTCTATGCTTTTGCAGTGGACTAAGTTTTTTCGAACTTTTTGGCATCTTTCCAACCAACTGTTCCACTTTTGACATTCCTAACAGTTGTCTAGAACATTGTACTAGAAAACTCAATTTAGTAATCTATTCAAATGGTGCAGGTTCTACTGTATAAATTCAGCATGATAACATAGTCAAGGTTACAGATGCCTATGATTACATCTTTATACCAACATGTTATGGTTTTGGTCTCTATACTTTTGCAGTATACTAAGGTTTATTTATTCGACACAGCTTTTATAATTTGCTCATAACTCATTTTCTCCCTTCTCAGGACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCG-AAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGT-CATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAG-CGACCCT</genome_strand>
        <mrna_strand>CTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCTCCAACACCTGAGTGGAAAAGATCTTCTGAGCTTGATTTGAATGGTGATGCTATGCCTGATGACGATGACGATGGAGGTCCTACAGCTCCTTTGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATTATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGGTCCACAATTTCCTGGTTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCTACATGGAAGGCTGATGGGACACGGTACATGATGCTGATCACGATGGATGGCTGTTTCTTAATTGATAGGCATTTCAACTTCCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCTGAAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCCGACACACAGAAGCAGGAAAGGAGATA-CTAATTAATGATATGATGGCCCTGAACCATGTATCTGTCCATTGAG...................................................................................................................................GCGACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255037" ref_strand="+" ref_description="SGN-E255037 [cLEG-31-K9]">
      <seq>agccagactatgttgatgccctatatgccttctatcatgagaaaaaacctgaaatggttgtttgtcctccaacacctgagtggaaaagatcttctgagcttgatctgaatggtgatgctatgcctaatgacgatgacgatggaggtcctacagctcctttgactgacaatcttgaagcacaagtagtaacctcaaatgatgacattttgggagatgcaatcccccaagatcagcaaaattatttacgacagttctgttatcaagcactgaaaatgaccccagggggtagaggcccacagtttcctggttcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgctacatggaaggctgatgggacacgatatatgatgctgatcacaatggatggctgtttcttaattgataggcatttcaacttccggagggttcagatgagatttccttgcagacacactaatgaaggtttagctgaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcctgacacacagaagcaggaaaggagatacctaatttatgatatgatggccctgaaccatgtgtctgtcatcgagcgacccttttatgaacggtggagaatgatcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="77860" stop="83938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78160" g_stop="78323" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78324" i_stop="80879" i_length="2556">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80880" g_stop="80999" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="284" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222">
            <donor d_prob="0.091" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81222" g_stop="81268" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="331" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83052" g_stop="83214" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="494" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122">
            <donor d_prob="0.622" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83337" g_stop="83474" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="632" r_length="138" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83606" g_stop="83638" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="665" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E255037" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78160" e_stop="78323"/>
          <exon e_start="80880" e_stop="80999"/>
          <exon e_start="81222" e_stop="81268"/>
          <exon e_start="83052" e_stop="83214"/>
          <exon e_start="83337" e_stop="83474"/>
          <exon e_start="83606" e_stop="83638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACTGTATGTGCTTCTGCAAGAGAACTTTCCTCGTAGATATTGTTGAACTTTATTAGTGGTTGAAGTGTTTGATTTTTTCCTTCTCTGATGAAAGTGTAAGCCTTTAGTTGTTTTTCCTTCTCTGATAGAAATGCAAGCCTTCGGTTTCCACTTCTGTGGTGTTGAATTTGATTGAATGTGAACACTAAGCTATTCTAGTTGATCTCGATATTAGAATGAGAAACCTATCACTTTCTATCTTTCTGATACTTCTATGGTGAGAATTAGTGGAGCTTGATTTTGAGTGCAACATTAAGCTTGATTATGGAAATTGCCAATATATGACATTCCCAAGTTGTTTTGTCAATGGAGATTGTAAATGAGGAACTCTTGAGTAACGACCTTGCATACTTGGGATGCAAGGATTGCCACAGCTTTTTGAAGGCATGATTCCTAATCGGAGATTACTTGAATCAGGAAGGGCTGGTCATTAATGCCTCATGCCTGTCTAGGCTAGATGTATTGAACCACCTTATGCAAGTCTCCTTTCGTCAGCCATGAGACGTTCCCATGTATGGTCTTAATATTCACTTCCGTTTCGGTTTGATGAAATTTGTACCATAAAATGTTCATATGTTATTCTCAGAGTGAGGACTTCTTTTCCTTGGACTCCAACTAGTTTTTGTCAGGATATGAATCCTCTATATAATTTGCTTTATTGCACTCAATTTCATTTCAACTCTGGAGTGATAATTAAGAAAATGATCTCTTGTTCTCCTTTATCGTTCATTCCCCACCCAGCAACCCTTTATGAGTTAGCGGGTTAAGGGTGAAATAAGTAGCCAAAATTTAATGCTGAAGATTTTTGGGTCATATCTTCCGTTTTCTTAATGTCCGTCCTGGGTGGCTTAATGTGATGATAAAGGTTTCCTAGGATTGTTCTTTCTTGATTGAAAGAATTCTCCTATAAATTCTGAGAACTCTGTACTCCGCGAATTTCTTTCTTATTTGCATTTGAGTGTTTTTACCTCCATTGACAGCCTATTTTATCGCCTTTGGTCCCCCATCAATTTAGACACCCCCAAGAAGAATCTAGTTTTTTTTAAAAGCTTGACAAAGGTCGCTAAGCAGTGGTAGAAGAGATCTAACTTTTGCTTAGACTTAGAGAAAGCATAATATTTTCTAACTTGAAAAAGAGTCTCATAAAATTGTTTAAAAATACACATACTAAAATGGTGTCATATTCGCTGACCTTCTAGAAAGATCAACGAGGTTCACTCCACCAATCAAAGAAAGACGCACCCAAGAAGAAATCTAGTTTTTTCTTTAAAGTTCAATAGAAGTGGCTAAACAGTGCTAGAAGAGATCTGACTTTTGTTTAGACTTAGAGCAAGCATAATATAGAAAGATAAACGAAGCTCGTTCTCCTTTTCTCTAATCTTTTGCTTGGGAAAGAGCATTTTGATGTTTTGGTATATTCTATCATCACTCCTTCACTGCTTTTGAAGGTTTTGACGATTAGGATTTTTATCAAAAATGGTTATTGAATAATTAAATTGTAGGACTGCATCTACATAGGAAAGCTAGTGTACACAGACATTCAACTTTGTTTTTTGGATGTTGGATTTGATTCACCTTTTACTATTTGAAAGTTATGTTCCAGAAAAATAAACTTAACTGAGAGAGCCAGAGAGTTGAGCGAGAAAGGTGGGCATGGTGGTGTAGTAAAGAAGGTGTGAATGGGGTAAAGAGAGGCAAGAAGGGCAGTGCATCCGGGGGGAGGGTGTGTGTGTAAAATAAAGACGGGAGGCAATGCCGATGGAGGGAGAAGGAATGGGGTTCGAGAGGATTGTACTGAAGTGAAAGGAGGGGTATTATTTGTGAAATCATGTTATTCTTTAAGAAGAATGACTAGCTATTGCTTGATGTCGCCTAATCTACTACTCCATGCCAGTATACCTGTTGTTTCTTTCCATTTGCCATTTGTTGTGTCCAAAAATATGATCTTTTGTTAAATGAGAAGTCTCTGTTCCCATTTATTCAAACTAATAAAAACTTATATTACTTCAAATTTTTCGACATCTTACCAACCAATTGTTCCACTTTTCACATTTCTAACAATTGTCGAGAACACTGTCCTAGAAAACTCAACTTAGTAATCTATTCAAATGGTGCAGGATCTACTGTACAAATTCAGCATGATAACATAATTAAGGTTACAGATGCTTGTGATTATGTTATACCAACATGTTATGGTTTTTTTGGTCTCTATGCTTTTGCAGTGGACTAAGTTTTTTCGAACTTTTTGGCATCTTTCCAACCAACTGTTCCACTTTTGACATTCCTAACAGTTGTCTAGAACATTGTACTAGAAAACTCAATTTAGTAATCTATTCAAATGGTGCAGGTTCTACTGTATAAATTCAGCATGATAACATAGTCAAGGTTACAGATGCCTATGATTACATCTTTATACCAACATGTTATGGTTTTGGTCTCTATACTTTTGCAGTATACTAAGGTTTATTTATTCGACACAGCTTTTATAATTTGCTCATAACTCATTTTCTCCCTTCTCAGGACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGAC</genome_strand>
        <mrna_strand>AGCCAGACTATGTTGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCTCCAACACCTGAGTGGAAAAGATCTTCTGAGCTTGATCTGAATGGTGATGCTATGCCTAATGACGATGACGATGGAGGTCCTACAGCTCCTTTGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCCCAAGATCAGCAAAATTATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGGCCCACAGTTTCCTGGTTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCTACATGGAAGGCTGATGGGACACGATATATGATGCTGATCACAATGGATGGCTGTTTCTTAATTGATAGGCATTTCAACTTCCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCTGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATGGCCCTGAACCATGTGTCTGTCATCGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453124" ref_strand="+" ref_description="SGN-E453124 [cSTS-18-P12]">
      <seq>atcgatgccctatatgccttctatcatgagaaaaaacctgaaatggttgtttgtccaccaacacctgagtggaaaaaatcttctgagcttgatttgaatggtgatgctatgccagatgacgatgacgatggaggtcctgcagctcctttgactgacaatcttgaagcacaagtagtaacctcaaatgatgacattttgggagatgcaatcccacaagatcagcaaaatcatttacgacagttctgttataaagcactgaaaatgaccccagggggtagaggcccacaatttcctggctcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgccacttggaaggctgatgggacacggtatatgatgctgatcacgatggatggttgtttcttaattgataggcatttcaacttccggagggttcagatgagatttccttgcagacacactaatgaaggtttagccgaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcctgacacacagaagcatgaaaggagatacctaatttatgatatgatggctttgaaccatgtgtctgtcattgagcgacccttttatgaacggtggagaatgattgacaaagaagtgattggtccaaggaattatgaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="77871" stop="83971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78171" g_stop="78323" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78324" i_stop="80879" i_length="2556">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80880" g_stop="80999" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="273" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222">
            <donor d_prob="0.091" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81222" g_stop="81268" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="320" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83052" g_stop="83214" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="483" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122">
            <donor d_prob="0.622" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83337" g_stop="83474" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="621" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83606" g_stop="83671" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="687" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E453124" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78171" e_stop="78323"/>
          <exon e_start="80880" e_stop="80999"/>
          <exon e_start="81222" e_stop="81268"/>
          <exon e_start="83052" e_stop="83214"/>
          <exon e_start="83337" e_stop="83474"/>
          <exon e_start="83606" e_stop="83671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACTGTATGTGCTTCTGCAAGAGAACTTTCCTCGTAGATATTGTTGAACTTTATTAGTGGTTGAAGTGTTTGATTTTTTCCTTCTCTGATGAAAGTGTAAGCCTTTAGTTGTTTTTCCTTCTCTGATAGAAATGCAAGCCTTCGGTTTCCACTTCTGTGGTGTTGAATTTGATTGAATGTGAACACTAAGCTATTCTAGTTGATCTCGATATTAGAATGAGAAACCTATCACTTTCTATCTTTCTGATACTTCTATGGTGAGAATTAGTGGAGCTTGATTTTGAGTGCAACATTAAGCTTGATTATGGAAATTGCCAATATATGACATTCCCAAGTTGTTTTGTCAATGGAGATTGTAAATGAGGAACTCTTGAGTAACGACCTTGCATACTTGGGATGCAAGGATTGCCACAGCTTTTTGAAGGCATGATTCCTAATCGGAGATTACTTGAATCAGGAAGGGCTGGTCATTAATGCCTCATGCCTGTCTAGGCTAGATGTATTGAACCACCTTATGCAAGTCTCCTTTCGTCAGCCATGAGACGTTCCCATGTATGGTCTTAATATTCACTTCCGTTTCGGTTTGATGAAATTTGTACCATAAAATGTTCATATGTTATTCTCAGAGTGAGGACTTCTTTTCCTTGGACTCCAACTAGTTTTTGTCAGGATATGAATCCTCTATATAATTTGCTTTATTGCACTCAATTTCATTTCAACTCTGGAGTGATAATTAAGAAAATGATCTCTTGTTCTCCTTTATCGTTCATTCCCCACCCAGCAACCCTTTATGAGTTAGCGGGTTAAGGGTGAAATAAGTAGCCAAAATTTAATGCTGAAGATTTTTGGGTCATATCTTCCGTTTTCTTAATGTCCGTCCTGGGTGGCTTAATGTGATGATAAAGGTTTCCTAGGATTGTTCTTTCTTGATTGAAAGAATTCTCCTATAAATTCTGAGAACTCTGTACTCCGCGAATTTCTTTCTTATTTGCATTTGAGTGTTTTTACCTCCATTGACAGCCTATTTTATCGCCTTTGGTCCCCCATCAATTTAGACACCCCCAAGAAGAATCTAGTTTTTTTTAAAAGCTTGACAAAGGTCGCTAAGCAGTGGTAGAAGAGATCTAACTTTTGCTTAGACTTAGAGAAAGCATAATATTTTCTAACTTGAAAAAGAGTCTCATAAAATTGTTTAAAAATACACATACTAAAATGGTGTCATATTCGCTGACCTTCTAGAAAGATCAACGAGGTTCACTCCACCAATCAAAGAAAGACGCACCCAAGAAGAAATCTAGTTTTTTCTTTAAAGTTCAATAGAAGTGGCTAAACAGTGCTAGAAGAGATCTGACTTTTGTTTAGACTTAGAGCAAGCATAATATAGAAAGATAAACGAAGCTCGTTCTCCTTTTCTCTAATCTTTTGCTTGGGAAAGAGCATTTTGATGTTTTGGTATATTCTATCATCACTCCTTCACTGCTTTTGAAGGTTTTGACGATTAGGATTTTTATCAAAAATGGTTATTGAATAATTAAATTGTAGGACTGCATCTACATAGGAAAGCTAGTGTACACAGACATTCAACTTTGTTTTTTGGATGTTGGATTTGATTCACCTTTTACTATTTGAAAGTTATGTTCCAGAAAAATAAACTTAACTGAGAGAGCCAGAGAGTTGAGCGAGAAAGGTGGGCATGGTGGTGTAGTAAAGAAGGTGTGAATGGGGTAAAGAGAGGCAAGAAGGGCAGTGCATCCGGGGGGAGGGTGTGTGTGTAAAATAAAGACGGGAGGCAATGCCGATGGAGGGAGAAGGAATGGGGTTCGAGAGGATTGTACTGAAGTGAAAGGAGGGGTATTATTTGTGAAATCATGTTATTCTTTAAGAAGAATGACTAGCTATTGCTTGATGTCGCCTAATCTACTACTCCATGCCAGTATACCTGTTGTTTCTTTCCATTTGCCATTTGTTGTGTCCAAAAATATGATCTTTTGTTAAATGAGAAGTCTCTGTTCCCATTTATTCAAACTAATAAAAACTTATATTACTTCAAATTTTTCGACATCTTACCAACCAATTGTTCCACTTTTCACATTTCTAACAATTGTCGAGAACACTGTCCTAGAAAACTCAACTTAGTAATCTATTCAAATGGTGCAGGATCTACTGTACAAATTCAGCATGATAACATAATTAAGGTTACAGATGCTTGTGATTATGTTATACCAACATGTTATGGTTTTTTTGGTCTCTATGCTTTTGCAGTGGACTAAGTTTTTTCGAACTTTTTGGCATCTTTCCAACCAACTGTTCCACTTTTGACATTCCTAACAGTTGTCTAGAACATTGTACTAGAAAACTCAATTTAGTAATCTATTCAAATGGTGCAGGTTCTACTGTATAAATTCAGCATGATAACATAGTCAAGGTTACAGATGCCTATGATTACATCTTTATACCAACATGTTATGGTTTTGGTCTCTATACTTTTGCAGTATACTAAGGTTTATTTATTCGACACAGCTTTTATAATTTGCTCATAACTCATTTTCTCCCTTCTCAGGACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGT</genome_strand>
        <mrna_strand>ATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCTATGCCAGATGACGATGACGATGGAGGTCCTGCAGCTCCTTTGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATAAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTCCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCATGAAAGGAGATACCTAATTTATGATATGATGGCTTTGAACCATGTGTCTGTCATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATTGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366155" ref_strand="+" ref_description="SGN-E366155 [cLPT-1-A11]">
      <seq>caaaatcatttacgacagttctgttatcaagcactgaaaatgaccccagggggtagaggcccacaatttcctggctcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgccacttggaaggctgatgggacacggtatatgatgctgatcacgatggatggttgtttcttaattgataggcatttcaactttcggagggttcagatgagatttccttgcagacacactaatgaaggtttagccgaaaagacccaccacttcaccttacttgatggagagatggtaattgatactttgcctgacacacagaagcacgaaaggagatacctaatttatgatatgattgctttgaaccaattgtctgtcattgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaaggaattatgaacgtcaacatatataccagagtagaaacccttattatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtcacgaaacttctcaaagaatgtatcccaaagctttcacatgaagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="80649" stop="84216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80949" g_stop="80999" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222">
            <donor d_prob="0.091" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81222" g_stop="81268" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="98" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83052" g_stop="83214" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="261" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83337" g_stop="83474" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="399" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83606" g_stop="83728" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="522" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83833" g_stop="83916" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="606" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E366155" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80949" e_stop="80999"/>
          <exon e_start="81222" e_stop="81268"/>
          <exon e_start="83052" e_stop="83214"/>
          <exon e_start="83337" e_stop="83474"/>
          <exon e_start="83606" e_stop="83728"/>
          <exon e_start="83833" e_stop="83916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGAT</genome_strand>
        <mrna_strand>CAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCCGAAAAGACCCACCACTTCACCTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCACGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATGTATCCCAAAGCTTTCACATGAAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366157" ref_strand="+" ref_description="SGN-E366157 [cLPT-1-A13]">
      <seq>gacagttctgttatcaagcactgaaaatgaccccaggggggagaggcccacaatttcctggctcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgccacttggaaggctgatgggacacggtatatgatgctgatcacgatggatggttgtttcttaattgataggcatttcaactttcggagggttcagatgagatttccttgcagacacactaatgaaggtttagccgaaaagacccaccacttcaccttacttgatggagagatggaaattgatactttgcctgacacacagaagcaggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="80662" stop="83722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80962" g_stop="80999" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222">
            <donor d_prob="0.091" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81222" g_stop="81268" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="85" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83052" g_stop="83214" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="248" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83337" g_stop="83422" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="334" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E366157" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80962" e_stop="80999"/>
          <exon e_start="81222" e_stop="81268"/>
          <exon e_start="83052" e_stop="83214"/>
          <exon e_start="83337" e_stop="83422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAG</genome_strand>
        <mrna_strand>GACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGGAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCCGAAAAGACCCACCACTTCACCTTACTTGATGGAGAGATGGAAATTGATACTTTGCCTGACACACAGAAGCAGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242569" ref_strand="+" ref_description="SGN-E242569 [cLED-30-N1]">
      <seq>gcacagtttcctggttcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgctacatggaaggctgatgggacacgatatatgatgctgatcacaatggatggctgtttcttaattgataggcatttcaacttccggagggttcagatgagatttccttgcagacacactaatgaaggtttagctgaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcctgacacacagaagcaggaaaggagatacctaatttatgatatgatggccctgaaccatgtgtctgtcatcgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaagaaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="80932" stop="84033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81231" g_stop="81268" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83052" g_stop="83214" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="201" r_length="163" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122">
            <donor d_prob="0.622" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83337" g_stop="83474" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="339" r_length="138" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83606" g_stop="83728" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="462" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83833" g_stop="83844" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="474" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E242569" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81231" e_stop="81268"/>
          <exon e_start="83052" e_stop="83214"/>
          <exon e_start="83337" e_stop="83474"/>
          <exon e_start="83606" e_stop="83728"/>
          <exon e_start="83833" e_stop="83844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAG</genome_strand>
        <mrna_strand>GCACAGTTTCCTGGTTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCTACATGGAAGGCTGATGGGACACGATATATGATGCTGATCACAATGGATGGCTGTTTCTTAATTGATAGGCATTTCAACTTCCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCTGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATGGCCCTGAACCATGTGTCTGTCATCGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGAAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343500" ref_strand="+" ref_description="SGN-E343500 [cTOF-19-M23]">
      <seq>gatcacgatggatggttgtttcttaattgataggcatttcaactttcggagggttcagatgagatttccttgcagacacactaatgaaggtttagccgaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcctgacacacagaagcaggaaaggagatacctaatttatgatatgattgctttgaaccaattgtctgtcattgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaaggaattatgaacgtcaacatatataccagagtagaaacccttattatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtcacgaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgtacgcatgagggtctcttgaagtggaaataccctgaaatgaactcggtcgactttctctttgaggtggttgacgatcgtgaattgctttatctacatgaacgagggaagaagaaactaatggaggggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgatgaccaaaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="82827" stop="86511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83127" g_stop="83214" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83337" g_stop="83474" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="226" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83606" g_stop="83728" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="349" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83833" g_stop="83931" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="448" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83932" i_stop="84296" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84297" g_stop="84386" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="538" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84387" i_stop="84694" i_length="308">
            <donor d_prob="0.741" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84695" g_stop="84776" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="620" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84777" i_stop="86139" i_length="1363">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86140" g_stop="86211" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="692" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E343500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83127" e_stop="83214"/>
          <exon e_start="83337" e_stop="83474"/>
          <exon e_start="83606" e_stop="83728"/>
          <exon e_start="83833" e_stop="83931"/>
          <exon e_start="84297" e_stop="84386"/>
          <exon e_start="84695" e_stop="84776"/>
          <exon e_start="86140" e_stop="86211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGA</genome_strand>
        <mrna_strand>GATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595430" ref_strand="+" ref_description="SGN-E595430 [38703]">
      <seq>gaaggtttagccgaaaagacccaccacttcactttacttgatggagagatggtaattgatactttgcctgacacacagaagcatgaaaggagatacctaatttatgatatgatggctttgaaccatgtgtctgtcattgagcgacccttttatgaacggtggagaatgattgacaaagaagtgattggtccaaggaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtcacaaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgcacgcatgagggtctcttgaagtggaaataccctgaaatgaactcggtcgactttctgtttgaggtggtcgacgatcgtgaattgctttatctacatgaacgagggaagaagaaactaatggaggggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgataaccaaaaatggatatggatgaggaccagagtcgacaaaggaactccgaatgattacaacacgtacagaaaggtgatggagaagtattactgaacaacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="83035" stop="86575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83212" g_stop="83214" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122">
            <donor d_prob="0.622" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83337" g_stop="83474" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="141" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83606" g_stop="83728" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="264" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83833" g_stop="83931" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="363" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83932" i_stop="84296" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84297" g_stop="84386" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="453" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84387" i_stop="84694" i_length="308">
            <donor d_prob="0.741" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84695" g_stop="84776" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="535" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84777" i_stop="86139" i_length="1363">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86140" g_stop="86270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="666" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="86271" i_stop="86421" i_length="151">
            <donor d_prob="0.874" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="86422" g_stop="86449" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="696" r_length="30" r_score="0.821"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E595430" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83212" e_stop="83214"/>
          <exon e_start="83337" e_stop="83474"/>
          <exon e_start="83606" e_stop="83728"/>
          <exon e_start="83833" e_stop="83931"/>
          <exon e_start="84297" e_stop="84386"/>
          <exon e_start="84695" e_stop="84776"/>
          <exon e_start="86140" e_stop="86270"/>
          <exon e_start="86422" e_stop="86449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGAT-GAGAAGTATTACCG-ACAACATCA</genome_strand>
        <mrna_strand>GAA..........................................................................................................................GGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCATGAAAGGAGATACCTAATTTATGATATGATGGCTTTGAACCATGTGTCTGTCATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATTGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACAAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGCACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTGTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTCGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATAACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGATTACAACACGTACAGAAAG.......................................................................................................................................................GTGATGGAGAAGTATTACTGAACAACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449196" ref_strand="+" ref_description="SGN-E449196 [cSTS-5-N13]">
      <seq>caccacttcactttacttgatggagagatggtaattgatactttgcctgacacacagaagcaggaaaggagatacctaatttatgatatgatggctttgaaccatgtgtctgtcattgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaaggaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtcacaaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgcacgcatgagggtctcttgaagtggaaataccctgaaatgaactcggtcgactttctgtttgaggtggtcgacgatcgtgaattgctttatctacatgaacgagggaagaagaaactaatggaggggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgataaccaaaaatggatatggatgaggacgagagtcgacaaaggaactccgaatgattacaacacgtacagaaaggtgatgagaagtattactgacaacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="83055" stop="86749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83355" g_stop="83474" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83606" g_stop="83728" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="243" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83833" g_stop="83931" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="342" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83932" i_stop="84296" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84297" g_stop="84386" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84387" i_stop="84694" i_length="308">
            <donor d_prob="0.741" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84695" g_stop="84776" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="514" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84777" i_stop="86139" i_length="1363">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86140" g_stop="86270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="645" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86271" i_stop="86421" i_length="151">
            <donor d_prob="0.874" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86422" g_stop="86449" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="673" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E449196" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83355" e_stop="83474"/>
          <exon e_start="83606" e_stop="83728"/>
          <exon e_start="83833" e_stop="83931"/>
          <exon e_start="84297" e_stop="84386"/>
          <exon e_start="84695" e_stop="84776"/>
          <exon e_start="86140" e_stop="86270"/>
          <exon e_start="86422" e_stop="86449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCA</genome_strand>
        <mrna_strand>CACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATGGCTTTGAACCATGTGTCTGTCATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACAAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGCACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTGTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTCGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATAACCAAAAATGGATATGGATGAGGACGAGAGTCGACAAAGGAACTCCGAATGATTACAACACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACTGACAACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560865" ref_strand="+" ref_description="SGN-E560865 [20586]">
      <seq>cagaagcaggaaaggagatactaatttatgatatgatggctttgaaccatgtgtctgtaattgagcgacccttttatgaacggtggagaatgattgacaaagaagtgattggtccaaggaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtcacaaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgcacgcatgagggtctcttgaagtggaaataccctgaaatgaactcggtcgactttctgtttgaggtggtcgacgatcgtgaattgctttatctacatgaacgagggaagaagaaactaatggaggggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgataaccaaaaatggatatggatgaggaccagagtcgacaaaggaactccgaatgattacaacacgtacagaaaggtgatgagaagtattactgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagccaaagctcatgtacgacggcagatgaatgaattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="83109" stop="86860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83409" g_stop="83474" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83606" g_stop="83728" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="188" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83833" g_stop="83931" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="287" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83932" i_stop="84296" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84297" g_stop="84386" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="377" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84387" i_stop="84694" i_length="308">
            <donor d_prob="0.741" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84695" g_stop="84776" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="459" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84777" i_stop="86139" i_length="1363">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86140" g_stop="86270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="590" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86271" i_stop="86421" i_length="151">
            <donor d_prob="0.874" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86422" g_stop="86560" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="731" r_length="141" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E560865" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83409" e_stop="83474"/>
          <exon e_start="83606" e_stop="83728"/>
          <exon e_start="83833" e_stop="83931"/>
          <exon e_start="84297" e_stop="84386"/>
          <exon e_start="84695" e_stop="84776"/>
          <exon e_start="86140" e_stop="86270"/>
          <exon e_start="86422" e_stop="86560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAG-CAAAGCTCATGTACGAC-GCAGATGAATGAATTGAT</genome_strand>
        <mrna_strand>CAGAAGCAGGAAAGGAGATA-CTAATTTATGATATGATGGCTTTGAACCATGTGTCTGTAATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATTGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACAAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGCACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTGTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTCGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATAACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGATTACAACACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACTGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCCAAAGCTCATGTACGACGGCAGATGAATGAATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588059" ref_strand="+" ref_description="SGN-E588059 [41603]">
      <seq>ctaatttatgatatgatggctttgaaccatgtgtctgtaattgagcgacccttttatgaacggtggagaatgattgacaaagaagtgattggtccaaggaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtcacaaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgcacgcatgagggtctcttgaagtggaaataccctgaaatgaactcggtcgactttctgtttgaggtggtcgacgatcgtgaattgctttatctacatgaacgagggaagaagaaactaatggaggggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgataaccaaaaatggatatggatgaggaccagagtcgacaaaggaactccgaatgattacaacacgtacagaaaggtgatgagaagtattactgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattggtgcttagctgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="83130" stop="86873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83430" g_stop="83474" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="0.91"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83606" g_stop="83728" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="168" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83833" g_stop="83931" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="267" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83932" i_stop="84296" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84297" g_stop="84386" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="357" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84387" i_stop="84694" i_length="308">
            <donor d_prob="0.741" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84695" g_stop="84776" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="439" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84777" i_stop="86139" i_length="1363">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86140" g_stop="86270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="570" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86271" i_stop="86421" i_length="151">
            <donor d_prob="0.874" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86422" g_stop="86573" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="722" r_length="152" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E588059" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83430" e_stop="83474"/>
          <exon e_start="83606" e_stop="83728"/>
          <exon e_start="83833" e_stop="83931"/>
          <exon e_start="84297" e_stop="84386"/>
          <exon e_start="84695" e_stop="84776"/>
          <exon e_start="86140" e_stop="86270"/>
          <exon e_start="86422" e_stop="86573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTT</genome_strand>
        <mrna_strand>CTAATTTATGATATGATGGCTTTGAACCATGTGTCTGTAATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATTGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACAAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGCACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTGTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTCGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATAACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGATTACAACACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACTGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGGTGCTTAGCTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244572" ref_strand="+" ref_description="SGN-E244572 [cLED-38-H13]">
      <seq>tgtcatcgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaagaaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtaacaaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgcactcatgagggtctcttgaagtggaaataccctgaaatgaactcagttgactttctgtttgaggtgatcgatgatcgtgaattgctgtatctacatgaacgagggaagaagaaactaatggaggggaatagagttattttcccagatggttctgatccgtcagcctactctgataaaataatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="83302" stop="86478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83465" g_stop="83474" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83606" g_stop="83728" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="133" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83833" g_stop="83931" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="232" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83932" i_stop="84296" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84297" g_stop="84386" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="322" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84387" i_stop="84694" i_length="308">
            <donor d_prob="0.741" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84695" g_stop="84776" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="404" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84777" i_stop="86139" i_length="1363">
            <donor d_prob="0.261" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86140" g_stop="86178" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="443" r_length="39" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E244572" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83465" e_stop="83474"/>
          <exon e_start="83606" e_stop="83728"/>
          <exon e_start="83833" e_stop="83931"/>
          <exon e_start="84297" e_stop="84386"/>
          <exon e_start="84695" e_stop="84776"/>
          <exon e_start="86140" e_stop="86178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAG</genome_strand>
        <mrna_strand>TGTCATCGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGAAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTAACAAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGCACTCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCAGTTGACTTTCTGTTTGAG....................................................................................................................................................................................................................................................................................................................GTGATCGATGATCGTGAATTGCTGTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAATAGAGTTATTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCGTCAGCCTACTCTGATAAAATAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239863" ref_strand="+" ref_description="SGN-E239863 [cLED-29-F4]">
      <seq>tgtcatcgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaagaaattatgaacgtcaacatatataccagagtagaaacccttactatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtaacaaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="83302" stop="84618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83465" g_stop="83474" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83606" g_stop="83728" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="133" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104">
            <donor d_prob="0.834" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83833" g_stop="83931" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="232" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83932" i_stop="84296" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84297" g_stop="84318" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="254" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E239863" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83465" e_stop="83474"/>
          <exon e_start="83606" e_stop="83728"/>
          <exon e_start="83833" e_stop="83931"/>
          <exon e_start="84297" e_stop="84318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTC</genome_strand>
        <mrna_strand>TGTCATCGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGAAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTACTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTAACAAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365643" ref_strand="+" ref_description="SGN-E365643 [cLPT-12-H22]">
      <seq>gatttttttctgctctctactgtcacgaaacttctcaaagaatttatcccaaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgtacgcatgagggtctcttgaagtggaaatatcctgaaatgaactcggtcgactttctctttgaggtggttgatgatcgtgaattgctttatctacatgaacgagggaagaagaaactaatggaggggagtagagttgttttcccaggtcagaaatccccagttatatcagttatatacttgaggtgtcatgaaggattgtttcccttaattggggtttagttgggaatataagagactaatatcatccacagtccacactcattaattttatctttttggaactgtgaactcgttaagattttattgctgtcttgtatacttactgagccgggtggatgttttttcttaataaaattttattgtggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="83545" stop="85300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83845" g_stop="83931" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83932" i_stop="84296" i_length="365">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84297" g_stop="84386" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="177" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84387" i_stop="84694" i_length="308">
            <donor d_prob="0.741" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84695" g_stop="85000" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="483" r_length="306" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E365643" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83845" e_stop="83931"/>
          <exon e_start="84297" e_stop="84386"/>
          <exon e_start="84695" e_stop="85000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGA</genome_strand>
        <mrna_strand>GATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATATCCTGAAATGAACTCGGTCGACTTTCTCTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTTGATGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTATATACTTGAGGTGTCATGAAGGATTGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458571" ref_strand="+" ref_description="SGN-E458571 [cPRO-6-M9]">
      <seq>aaagctttcacatgaagctgatggtcttatttttcagggttgggatgatccttatgttcctcgcacgcatgagggtctcttgaagtggaaataccctgaaatgaactcggtcgactttctgtttgaggtggtcgacgatcgtgaattgctttatctacatgaacgagggaagaagaaactaatggaggggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgataaccaaaaatggatatggatgaggaccagagtcgacaaaggaactccgaatgattacaacacgtacagaaaggtgatgagaagtattactgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattggtgcttagctgtgttcatgacatgtagatcaatagaaggatatttacgagcagccttagtcactaggcgtgttttgtgtactatactgggtttgttgtatggatccagttggcacactgtaaacttagtggtccatgactcgggccctatgttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="83595" stop="87012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83895" g_stop="83931" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83932" i_stop="84296" i_length="365">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84297" g_stop="84386" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="127" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84387" i_stop="84694" i_length="308">
            <donor d_prob="0.741" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84695" g_stop="84776" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="209" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84777" i_stop="86139" i_length="1363">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86140" g_stop="86270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="340" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86271" i_stop="86421" i_length="151">
            <donor d_prob="0.874" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86422" g_stop="86712" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="635" r_length="295" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E458571" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83895" e_stop="83931"/>
          <exon e_start="84297" e_stop="84386"/>
          <exon e_start="84695" e_stop="84776"/>
          <exon e_start="86140" e_stop="86270"/>
          <exon e_start="86422" e_stop="86712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAGGTGCTAAAGAGTACCTATACTGAATTGCTTCTTGTTCTAGTGTTGTATTGGACTTGCTCCTGAGGAGTTGATTTCTTACATCACTTAAGATGTTTCCAAATTATATGGGATGTATGTTTTGATTGCTATGTTGAAAAATTCACTGTGGAAGTGGTTTCGAACCTTTATCTATGTTTACTCTTATGTTGCAGAGAAGTAGAGTTAGTAGCACAGCCTCTTGCATGTTATTGCAAATGACATGTTTATGGCTAACAGTAGCACAGCCTCTTGCATGTTATGTTTATGGCTAACAGTGATGGAAATGCATAATCATACAGATGAATTTAGGTTCTGGATACTAAGCCACTGTTTTCTTTCTTTGTTAGGGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCAT--C-T-AATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTC</genome_strand>
        <mrna_strand>AAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG.............................................................................................................................................................................................................................................................................................................................................................................GGTTGGGATGATCCTTATGTTCCTCGCACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTGTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTCGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATAACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGATTACAACACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACTGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGGTGCTTAGCTGTGTTCATGACATGTAGATCAATAGAAGGATATTTACGAGCAGCCTTAGTCACTAGGCGTGTTTTGTGTACTATACTGGGTTTGTTGTATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCCTATGTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620874" ref_strand="+" ref_description="SGN-E620874 [71580]">
      <seq>ttgccttatgtcctcgcacgcatgagggtctcttgaagtggaaataccctgaaatgaactcggtcgactttctgtttgaggtggtcgacgatcgtgaattgctttatctacatgaacgagggaagaagaaactaatggaggggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgataaccaaaaatggatatggatgaggaccagagtcgacaaaggaactccgaatgattacaacacgtacagaaaggtgatgagaagtattactgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattggtgcttagctgtgttcatgacatgtagatcaatagaagaatatttacgagcagccttagtccctaggcatgttttgtgtactatactgggtttgtcgtatggacccagttggcacactgtaaacttagtggtccatgactttgtgttttttcgtcgttagcgataagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="84009" stop="87010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84306" g_stop="84386" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84387" i_stop="84694" i_length="308">
            <donor d_prob="0.741" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84695" g_stop="84776" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="162" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84777" i_stop="86139" i_length="1363">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86140" g_stop="86270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="293" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86271" i_stop="86421" i_length="151">
            <donor d_prob="0.874" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86422" g_stop="86728" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="598" r_length="305" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E620874" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84306" e_stop="84386"/>
          <exon e_start="84695" e_stop="84776"/>
          <exon e_start="86140" e_stop="86270"/>
          <exon e_start="86422" e_stop="86728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCAT--C-T-AATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGG</genome_strand>
        <mrna_strand>TTGCCTTATG-TCCTCGCACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTGTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTCGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATAACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGATTACAACACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACTGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGGTGCTTAGCTGTGTTCATGACATGTAGATCAATAGAAGAATATTTACGAGCAGCCTTAGTCCCTAGGCATGTTTTGTGTACTATACTGGGTTTGTCGTATGGACCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACT------TTGTGTTTTTTCGTCGTTAGCGATAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366156" ref_strand="+" ref_description="SGN-E366156 [cLPT-1-A11](-)">
      <seq>cggtcgactttctctttgaggtggttgatgatcgtgaattgctttatctacatgatcgagggaagaagaaactaatggaggggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgataaccaaaaatggatatggatgaggaccagagtcgacaaaggaactccgaatgactacaatacgtacagaaaggtgatgagaagtattaccgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattgatgcttagctgtgttcatctaatatcattagaagggtatgtacaagcagctttagttcttaggcgtgttttgtgtactatactgggttcacactgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="84067" stop="86946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84367" g_stop="84386" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84387" i_stop="84694" i_length="308">
            <donor d_prob="0.741" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84695" g_stop="84776" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="102" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84777" i_stop="86139" i_length="1363">
            <donor d_prob="0.261" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86140" g_stop="86270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="233" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86271" i_stop="86421" i_length="151">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86422" g_stop="86657" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="469" r_length="236" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E366156" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84367" e_stop="84386"/>
          <exon e_start="84695" e_stop="84776"/>
          <exon e_start="86140" e_stop="86270"/>
          <exon e_start="86422" e_stop="86657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTCGACTTTCTCTTTGAGGTTGTATTCTGCTCTCCTAGTGAATAGAGCTGTTGCTGTTTCCTCCTTGTACTTTTGGTTTCTTGCTGTCGTTATGCGCCTACACCTTACCTTTCAATATCATTTTTCCATGCTATAAGTGTGTTGAGATAGTTATTAAAATGAACCATTTTAGCTTTTAGGCGAGATGATCACACACGTAACATAATATTAAAGCAGGTAGTGGTTCTTAGTTCTAGTCTCGCTGTCACAGAATAGCCTTTGTGAAGTGGATCATGTTTCATGCTCTCCTATTGGAATTAAGTGTGATTTCTCTGATAATATGGCAGGTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGA</genome_strand>
        <mrna_strand>CGGTCGACTTTCTCTTTGAG....................................................................................................................................................................................................................................................................................................................GTGGTTGATGATCGTGAATTGCTTTATCTACATGATCGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATAACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGTATGTACAAGCAGCTTTAGTTCTTAGGCGTGTTTTGTGTACTATACTGGGTTCACACTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400626" ref_strand="+" ref_description="SGN-E400626 [PPC-1-L11]">
      <seq>ggaagaagaaactaatggaggggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgataaccaaaaatggatatggatgaggaccagagtcgacaaaggaactccgaatgattacaacacgtacagaaaggtgatgagaagtattactgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattggtgcttagctgtgttcatgacatgtagatcaatagaagaatatttacgagcagccttagtccctaggcatgttttgtgtactatactgggtttgttgtatggacccagttggcacactgtaaacttagtggtccatgactttgtgttttttcgtcgttagcgataaggttgtcttgatattagttgttttagttcacttcttttttcctggtactggtaagttgtctgaggtaggttttactccagtagtagtttaaaacttcaagctctatgntatctattccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="84435" stop="87105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84735" g_stop="84776" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84777" i_stop="86139" i_length="1363">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86140" g_stop="86270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="173" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86271" i_stop="86421" i_length="151">
            <donor d_prob="0.874" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86422" g_stop="86805" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="550" r_length="377" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E400626" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84735" e_stop="84776"/>
          <exon e_start="86140" e_stop="86270"/>
          <exon e_start="86422" e_stop="86805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCAT--C-T-AATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTA</genome_strand>
        <mrna_strand>GGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATAACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGATTACAACACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACTGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGGTGCTTAGCTGTGTTCATGACATGTAGATCAATAGAAGAATATTTACGAGCAGCCTTAGTCCCTAGGCATGTTTTGTGTACTATACTGGGTTTGTTGTATGGACCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACT------TTGTGTTTTTTCGTCGTTAGCGATAAGGTTGTCTTG-ATA-T-TAGTTGTTTTAGTTCACTTCTTTTTT-CCTGG-TACTGGTAAGTTGTCTGAGGTAGGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468615" ref_strand="+" ref_description="SGN-E468615 [cSTB-5-I8]">
      <seq>ggagtagagttgttttcccagatggttctgatccatcagcttactccggtaaaataatagagtgctcttttgacactgataaccaaaaatggatatggatgaggaccagagtcgacaaaggaactccgaatgattacaacacgtacagaaaggtgatgagaagtattactgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattggtgcttagctgtgttcatgacatgtagatcaatagaagaatatttacgagcagccttagtccctaggcatgttttgtgtactatactgggtttgttgtatggacccagttggcacactgtaaacttagtggtccatgactttgtgttttttcgtcgttagcgataaggttgtcttgtatattagttgttttagttcacttcttttttcctggttactggtaagttgtctgaggtaggttttactccaatagtagtttaaaacttcaagctctatgttatctattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="84456" stop="87105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84756" g_stop="84776" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84777" i_stop="86139" i_length="1363">
            <donor d_prob="0.261" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86140" g_stop="86270" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="152" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86271" i_stop="86421" i_length="151">
            <donor d_prob="0.874" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86422" g_stop="86805" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="531" r_length="379" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E468615" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84756" e_stop="84776"/>
          <exon e_start="86140" e_stop="86270"/>
          <exon e_start="86422" e_stop="86805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGAATTGGATGCAGTGCTATTATTTGATGGAGTTATTAAACTTCATTCGAGAATGATTTAAAAAGTTAAGGATGCTATTTCACACTCCCTTGAAACTGTCAAGATTCCTTTTCGGTGTTTGTGAGGTGCTAAGTAGTAGTCCCTCCGTTCCTTCTTACTTGGCGCATGTTGACTTAACTCCTTTGGGGTCTATTTTACTAAATTAACATTTTTAATTATGCTTTGGAAATATAAGTGTGACTAGTAGACTTTATGTAGTTACTTATGATAAGGGTAGTCTTTGAAGAAAAATAGTAAATCCTCTTGATATGCAACAAGTAAAAAGGAAAATCTATTTTTACCAAGGACAAGTAAAAATGAACTGACTACTACTGAGGGAGTAGTAAAATTATGGATAAAAATTCCACAGATACTTCTTGTGACTTTAAAAAACTTAAGGCAGTGCTGCTATTTCACAACTGATACTCTCTTGTAAGTTCAAGATGCATATTCTTCTTTGCCAAAAAGAAAAGAAAAAGATACATATTCTTCCTTTTATTTTCTGCTCTGTTAACGCCTAGTAAATTGAATTTGGATTTTCCACAACTTGAAATTGGATCAGTTGCTAAGGTTAAATAAAGGTCAGATGTGTAAGTTTGGATTATTTGGATTGTCACAATGGGAATTGGTCTTTCCTTCTGAATACTCTCAGACAAAAGGGATTGGTAGCAAATGGATGAAGTGGATTGAGGTATATATAAGAACAGTCTAAGTTTTCTGTCCTTGTGAATGGGGAACCCATGGGCTTTTTTGAATCAGGAGGAGGGCTGAGACAGGGTGATTCTCTCTCCCCTTCCTTATTCATTTTGGTAATGGAAAGCTTTGATAGTATGATGGGGATTGCAACCCAAAACAGATGGATTAGAAGCTTTCAGGTTGGAGATAGAGTGGGGGAGAAAAAGAAGTGTCATGTGCTCTATGTGGTTTAGTGACATACAGGCAAATGTCTAATCTGTTGTCCTATAGTGTTGCATATCTAAGCAGTTCTCTTGTGCTTTATCTGTGTCCCGTGAACTTTTGTGTTGTTTTTGTTTTTCTCTCGCTTCTCTTGGTTATTGGCCTTTGGAGCATATCCTGAAATGTTGGGTCCTTTCATGTTTCAGATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCAT--C-T-AATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTA</genome_strand>
        <mrna_strand>GGAGTAGAGTTGTTTTCCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATAACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGATTACAACACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACTGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGGTGCTTAGCTGTGTTCATGACATGTAGATCAATAGAAGAATATTTACGAGCAGCCTTAGTCCCTAGGCATGTTTTGTGTACTATACTGGGTTTGTTGTATGGACCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACT------TTGTGTTTTTTCGTCGTTAGCGATAAGGTTGTCTTGTATA-T-TAGTTGTTTTAGTTCACTTCTTTTTT-CCTGGTTACTGGTAAGTTGTCTGAGGTAGGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551595" ref_strand="+" ref_description="SGN-E551595 [cTSB-1-D4]">
      <seq>gacaaaggaactccgaatgactacaatacgtacagaaaggtgatgagaagtattaccgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattgatgcttagctgtgttcatctaatatcattagaagggcatgtacaagcagccttagttcctaggcgtgttttgtgtgctatactgggtttgttatatggatccagttggcacactgtaaacttagtggtccatgactcgggccttgtgttttttcttcgttagcgatgaggttgtcttgtatattatagttgttttagttcactttttttttacctggttactgttatgttgtctaaggtaggttttaaactttcaagctctatgcgatctattcccttgtgaatacaaaattgttctactagttatttctagtttatcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="85932" stop="87177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86232" g_stop="86270" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86271" i_stop="86421" i_length="151">
            <donor d_prob="0.874" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86422" g_stop="86876" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="494" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="519"/>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E551595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86232" e_stop="86270"/>
          <exon e_start="86422" e_stop="86876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATC</genome_strand>
        <mrna_strand>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555362" ref_strand="+" ref_description="SGN-E555362 [cTSC-2-D4]">
      <seq>gacaaaggaactccgaatgactacaatacgtacagaaaggtgatgagaagtattaccgacaacatcactgaagaagtgttgttgaatgagatttatgagatcattcgactgccaatgtatgcggataggatacagagtgatagcaaagctcatgtacgacgcagatgaatgaattgatgcttagctgtgttcatctaatatcattagaagggcatgtacaagcagccttagttcctaggcgtgttttgtgtgctatactgggtttgttatatggatccagttggcacactgtaaacttagtggtccatgactcgggccttgtgttttttcttcgttagcgatgaggttgtcttgtatattatagttgttttagttcactttttttttacctggttactgttatgttgtctaaggtaggttttaaactttcaagctctatgcgatctattcccttgtgaatacaaaattgttctactagttatttctagtttatcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="85932" stop="87177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86232" g_stop="86270" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86271" i_stop="86421" i_length="151">
            <donor d_prob="0.874" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86422" g_stop="86876" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="494" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="519"/>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-E555362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86232" e_stop="86270"/>
          <exon e_start="86422" e_stop="86876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAGGTGTTCCTATAATGACACACACTAAACTAATGCAGTTGCTTGTTCATATGTAGACTTGTGGTTCATTAGAACCTTTTCCATATTTTCTCATCTTTTAGATAGATTATGCTACCTATTAGACTCTAATTATGGTTCATGTACAAAAATTCAGGTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATC</genome_strand>
        <mrna_strand>GACAAAGGAACTCCGAATGACTACAATACGTACAGAAAG.......................................................................................................................................................GTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>81</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="415" PGL_stop="47"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="415" e_stop="47"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="415" e_stop="47" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="415" stop="47"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTATGAATATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACTTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTCAAAGTTATTCGTCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATATCTTTACATTACTACAATTAATGTAAAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAATAAAAGGTTAATTAATTTTAATGATTTTATCATTTGGCATG</gDNA_template>
            <first_frame> V  M  N  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  L  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  S  K  L  F  V  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  I  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  I  K  G  *  L  I  L  M  I  L  S  F  G  M </first_frame>
            <second_frame>  L  *  I  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  Q  S  Y  S  S  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  S  L  H  Y  Y  N  *  C  K  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  *  K  V  N  *  F  *  *  F  Y  H  L  A   </second_frame>
            <third_frame>   Y  E  Y  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  K  K  K  I  V  H  E  K  L  P  A  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  L  I  N  F  N  D  F  I  I  W  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="287" stop="48"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSKKLIKFKVIRQNGYHVETANEGKVEYLYITTINVKKKIVHEKLPAFSSGLYYTSISTVESHAVVNKRLINFNDFIIWH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="415" stop="179"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMNMAYVNTISGSTKLIEGSGRATLLLLGGTILSIDNALYCSKSQRNLLSSKLFVKMAIMLRRLMKERLNIFTLLQLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17507" PGL_stop="18155"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17507" e_stop="18155"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="17507" e_stop="18155" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17507" stop="18155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17508" stop="17892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGACTGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGACATCAGATATCCATCGGAGTATAGCTTAAGATCGACCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGATTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATTTGGTCATACAGCGTTCGGGGAGAAAGATTATTACTTGCAAGTGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATTTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAACATTTGTACATGGAGAGTTGGAGGAAGATATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  *  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  D  *  S  R  A  T  D  R  N  *  Y  S  R  I  Y  D  I  R  Y  P  S  E  Y  S  L  R  S  T  K  E  G  W  S  S  A  T  Y  E  V  W  I  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  F  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  V  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  F  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  S  G  A  *  T  T  *  C  E  D  N  I  C  T  W  R  V  G  G  R  Y  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  T  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  T  S  D  I  H  R  S  I  A  *  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  R  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  T  H  Q  N  L  E  L  E  Q  L  D  V  K  T  T  F  V  H  G  E  L  E  E  D  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  I  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  L  I  K  S  H  R  Q  K  L  I  F  Q  N  L  *  H  Q  I  S  I  G  V  *  L  K  I  D  Q  G  G  L  E  F  G  H  L  R  G  M  D  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  V  R  G  E  R  L  L  L  A  S  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  F  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  H  L  Y  M  E  S  W  R  K  I  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17664" stop="18155"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQRSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVTHQNLELEQLDVKTTFVHGELEEDIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18166" PGL_stop="18973"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18166" e_stop="18973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="18166" e_stop="18973" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18166" stop="18973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGATCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTTTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCTTCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAAAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACATTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGTTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGTTCTGTCATCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  *  S  W  A  I  L  G  D  H  M  I  V  V  S  T  T  I  G  S  R  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  F  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  L  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  K  N  I  G  R  L  *  R  E  F  S  G  T  L  K  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  V  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  V  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  I  I  *  L  L  C  L  L  Q  *  A  Q  G  *  F  I  H  L  S  G  A  L  C  R  *  Y  A  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  S  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  F  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  Y  *  Y  P  Q  C  F  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  H  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  F  C  H  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  R  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  S  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  K  E  H  W  Q  A  V  K  R  I  F  R  Y  L  K  G  T  S  D  I  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  I  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18168" stop="18971"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRRSYDCCVYYNRLKDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSASNIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGKEHWQAVKRIFRYLKGTSDIGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVISWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20118" PGL_stop="20534"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20118" e_stop="20534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="20118" e_stop="20534" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20118" stop="20534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAAGATTTATGTGGAAAACACTTCGATGTGAAGAGTAAAAAACCACGAGACCAAAAGCTCCACCATAATCACAAAGAGTTACAATATTGTTCTCCAAATTGGCCACAAAACAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCACAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGCCCAACAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCAGACAAGAAACGAAGCGGGAATCACAATTTGAAGTTGGTTGTTAGGGCTGAATTTTGACTGCGAAAAACCGCTCTCTTTCTCTCTTTTTGGCTGCTGAAAAAACTCTCTGT</gDNA_template>
            <first_frame> H  Q  D  L  C  G  K  H  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  H  N  H  K  E  L  Q  Y  C  S  P  N  W  P  Q  N  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  Q  S  P  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  P  N  K  S  N  S  V  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  R  Q  E  T  K  R  E  S  Q  F  E  V  G  C  *  G  *  I  L  T  A  K  N  R  S  L  S  L  F  L  A  A  E  K  T  L  C </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  T  S  M  *  R  V  K  N  H  E  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  I  G  H  K  T  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  H  N  H  Q  F  R  S  Y  C  S  R  Q  Q  N  *  S  C  S  P  T  N  P  T  L  S  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  H  N  L  K  L  V  V  R  A  E  F  *  L  R  K  T  A  L  F  L  S  F  W  L  L  K  K  L  S   </second_frame>
            <third_frame>   P  R  F  M  W  K  T  L  R  C  E  E  *  K  T  T  R  P  K  A  P  P  *  S  Q  R  V  T  I  L  F  S  K  L  A  T  K  Q  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  T  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  A  Q  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  Q  T  R  N  E  A  G  I  T  I  *  S  W  L  L  G  L  N  F  D  C  E  K  P  L  S  F  S  L  F  G  C  *  K  N  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0103M07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="22415" PGL_stop="22208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22415" e_stop="22208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="22415" e_stop="22208" e_length="208"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22415" stop="22208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATCCATTTTGAGAGCAAAGTGAGATATTCCATAGACTATACAAGATAAACAGTCTGTGAAAAAAAATGGAGTGTGAGCAATATTTTAGTAAGGTGGAAAGCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTATACAGTATAAAATTCCTTACTATAGTGATATCAGTTGCTCCTCT</gDNA_template>
            <first_frame> K  I  H  F  E  S  K  V  R  Y  S  I  D  Y  T  R  *  T  V  C  E  K  K  W  S  V  S  N  I  L  V  R  W  K  A  K  E  C  C  S  F  *  V  C  S  S  H  F  E  Y  C  I  R  D  Y  T  V  *  N  S  L  L  *  *  Y  Q  L  L  L  </first_frame>
            <second_frame>  K  S  I  L  R  A  K  *  D  I  P  *  T  I  Q  D  K  Q  S  V  K  K  N  G  V  *  A  I  F  *  *  G  G  K  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  I  V  F  V  T  I  Q  Y  K  I  P  Y  Y  S  D  I  S  C  S  S </second_frame>
            <third_frame>   N  P  F  *  E  Q  S  E  I  F  H  R  L  Y  K  I  N  S  L  *  K  K  M  E  C  E  Q  Y  F  S  K  V  E  S  K  R  V  L  F  L  L  S  V  *  *  S  L  *  V  L  Y  S  *  L  Y  S  I  K  F  L  T  I  V  I  S  V  A  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0103M07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="27352" PGL_stop="28278"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27352" e_stop="28278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="27352" e_stop="28278" e_length="927"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27352" stop="28278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTGCTTGAAGTTGCCTGTGGTGGGAGGCCAATAGAGCCAAGACAAGACGATGATGATCTGATTTTAGTCGATTGGGTGGTCTTGTGCTGGAATAGGGGTAATATTCTTGAGGCAGTTGATCCAAACATAGGGATTGATTTTGTTCCAGGGAAAGTGGAGTTGGTCTTAAAGCTAGGCTTGTTTTGCTCTCATTCAGAGCCCTCATTTAGGCCAACCATGCGACAAATCTTGCTGTTCTTGGATGGTGTTGTGGCCTTACCAGAGTTATCATCACTCAGTATTTCATCAGCTGGTTTAACCATTGTATCCATCTTCAGTAGTTAGTCCACATTTTCGCTCTCCATCTGCAAGCTTAAATATGTAGTAACTTAAGCTTGTAAGCTATAATCATGCTTAATTTTCTCATCAATTTGGCTTCAACTTAGTAGCATACATATAGTCAGCTAATAATCTGCATGCATAAGAACTTGCTCATATGTTACTTCCATTGTTTCCTGCAGAGCTACCATTTAATTTAGAAGTTACCTTGCTTGGAAGTTTAGCAAACTCAACGACACGGATTGCCTAGTAATTTTCTTGTGAAACCTACATATCCAAGATTACAATTACAATTACCACCTGAAGACTTCCAACAGCACTTCCAAGCTAAATCCCAGTCATCGCGGCAATGCCACACCAGGCATGTTGTTGCTGTGGAGTGCTGAGTTTGACAAGCTATATAACAACATGTTATATTTGTTACTATACAAATAATGTACTAATGTACAAGCAGAATCTCAGTTCTTTGATCTTTACTGTTATGTTCTTTTCCCTTTATAAATTTTTTTTAAAATTAAGTTTTAAGTCAACTATATGATGTAGAATTTCTTCTTTCTGTTCCTTATTCAAACTTCCTCATTGAGCCCAACAATGACTTTTGGGG</gDNA_template>
            <first_frame> L  F  C  L  K  L  P  V  V  G  G  Q  *  S  Q  D  K  T  M  M  I  *  F  *  S  I  G  W  S  C  A  G  I  G  V  I  F  L  R  Q  L  I  Q  T  *  G  L  I  L  F  Q  G  K  W  S  W  S  *  S  *  A  C  F  A  L  I  Q  S  P  H  L  G  Q  P  C  D  K  S  C  C  S  W  M  V  L  W  P  Y  Q  S  Y  H  H  S  V  F  H  Q  L  V  *  P  L  Y  P  S  S  V  V  S  P  H  F  R  S  P  S  A  S  L  N  M  *  *  L  K  L  V  S  Y  N  H  A  *  F  S  H  Q  F  G  F  N  L  V  A  Y  I  *  S  A  N  N  L  H  A  *  E  L  A  H  M  L  L  P  L  F  P  A  E  L  P  F  N  L  E  V  T  L  L  G  S  L  A  N  S  T  T  R  I  A  *  *  F  S  C  E  T  Y  I  S  K  I  T  I  T  I  T  T  *  R  L  P  T  A  L  P  S  *  I  P  V  I  A  A  M  P  H  Q  A  C  C  C  C  G  V  L  S  L  T  S  Y  I  T  T  C  Y  I  C  Y  Y  T  N  N  V  L  M  Y  K  Q  N  L  S  S  L  I  F  T  V  M  F  F  S  L  Y  K  F  F  L  K  L  S  F  K  S  T  I  *  C  R  I  S  S  F  C  S  L  F  K  L  P  H  *  A  Q  Q  *  L  L  G </first_frame>
            <second_frame>  F  S  A  *  S  C  L  W  W  E  A  N  R  A  K  T  R  R  *  *  S  D  F  S  R  L  G  G  L  V  L  E  *  G  *  Y  S  *  G  S  *  S  K  H  R  D  *  F  C  S  R  E  S  G  V  G  L  K  A  R  L  V  L  L  S  F  R  A  L  I  *  A  N  H  A  T  N  L  A  V  L  G  W  C  C  G  L  T  R  V  I  I  T  Q  Y  F  I  S  W  F  N  H  C  I  H  L  Q  *  L  V  H  I  F  A  L  H  L  Q  A  *  I  C  S  N  L  S  L  *  A  I  I  M  L  N  F  L  I  N  L  A  S  T  *  *  H  T  Y  S  Q  L  I  I  C  M  H  K  N  L  L  I  C  Y  F  H  C  F  L  Q  S  Y  H  L  I  *  K  L  P  C  L  E  V  *  Q  T  Q  R  H  G  L  P  S  N  F  L  V  K  P  T  Y  P  R  L  Q  L  Q  L  P  P  E  D  F  Q  Q  H  F  Q  A  K  S  Q  S  S  R  Q  C  H  T  R  H  V  V  A  V  E  C  *  V  *  Q  A  I  *  Q  H  V  I  F  V  T  I  Q  I  M  Y  *  C  T  S  R  I  S  V  L  *  S  L  L  L  C  S  F  P  F  I  N  F  F  *  N  *  V  L  S  Q  L  Y  D  V  E  F  L  L  S  V  P  Y  S  N  F  L  I  E  P  N  N  D  F  W   </second_frame>
            <third_frame>   F  L  L  E  V  A  C  G  G  R  P  I  E  P  R  Q  D  D  D  D  L  I  L  V  D  W  V  V  L  C  W  N  R  G  N  I  L  E  A  V  D  P  N  I  G  I  D  F  V  P  G  K  V  E  L  V  L  K  L  G  L  F  C  S  H  S  E  P  S  F  R  P  T  M  R  Q  I  L  L  F  L  D  G  V  V  A  L  P  E  L  S  S  L  S  I  S  S  A  G  L  T  I  V  S  I  F  S  S  *  S  T  F  S  L  S  I  C  K  L  K  Y  V  V  T  *  A  C  K  L  *  S  C  L  I  F  S  S  I  W  L  Q  L  S  S  I  H  I  V  S  *  *  S  A  C  I  R  T  C  S  Y  V  T  S  I  V  S  C  R  A  T  I  *  F  R  S  Y  L  A  W  K  F  S  K  L  N  D  T  D  C  L  V  I  F  L  *  N  L  H  I  Q  D  Y  N  Y  N  Y  H  L  K  T  S  N  S  T  S  K  L  N  P  S  H  R  G  N  A  T  P  G  M  L  L  L  W  S  A  E  F  D  K  L  Y  N  N  M  L  Y  L  L  L  Y  K  *  C  T  N  V  Q  A  E  S  Q  F  F  D  L  Y  C  Y  V  L  F  P  L  *  I  F  F  K  I  K  F  *  V  N  Y  M  M  *  N  F  F  F  L  F  L  I  Q  T  S  S  L  S  P  T  M  T  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27354" stop="27680"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLEVACGGRPIEPRQDDDDLILVDWVVLCWNRGNILEAVDPNIGIDFVPGKVELVLKLGLFCSHSEPSFRPTMRQILLFLDGVVALPELSSLSISSAGLTIVSIFSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28006" stop="28212"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPVIAAMPHQACCCCGVLSLTSYITTCYICYYTNNVLMYKQNLSSLIFTVMFFSLYKFFLKLSFKSTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="36463" PGL_stop="36016"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36463" e_stop="36016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="36463" e_stop="36016" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36463" stop="36142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36463" stop="36173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36462" stop="36016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTTTATAGCAAAAAGATATATGTTTTTCTCGCTTTATACAAAAATAGAAACACAATATATACACTTCTGTTGTATAAAACTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTAGCCTTTTTCTCTGCAATTTTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTCCTGGGAGAGAGACGCTGGCAAATTTTAGATAAAGTTTGCTATGGAGCACAATTAAATTAAACCCTAGCTATTCTATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  F  I  A  K  R  Y  M  F  F  S  L  Y  T  K  I  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  R  *  P  F  S  L  Q  F  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  K  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  P  G  R  E  T  L  A  N  F  R  *  S  L  L  W  S  T  I  K  L  N  P  S  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  L  *  Q  K  D  I  C  F  S  R  F  I  Q  K  *  K  H  N  I  Y  T  S  V  V  *  N  *  R  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  V  S  L  F  L  C  N  F  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  K  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  L  D  K  V  C  Y  G  A  Q  L  N  *  T  L  A  I  L  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  T  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  S  W  E  R  D  A  G  K  F  *  I  K  F  A  M  E  H  N  *  I  K  P  *  L  F  Y  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36276" stop="36049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRRYTFLHVYIQFSLALYKTKTELYTSVYKAREASENGEWRARFLGERRWQILDKVCYGAQLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="51335" PGL_stop="50487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51335" e_stop="51091"/>
            <exon e_start="50969" e_stop="50487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="0.898"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.898">
            <gDNA_exon_boundary e_start="51335" e_stop="51091" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="51090" i_stop="50970" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="50969" e_stop="50487" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51335" stop="51091"/>
              <exon start="50969" stop="50654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51334" stop="51091"/>
              <exon start="50969" stop="50487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51334" stop="51091"/>
              <exon start="50969" stop="50588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51334" stop="51091"/>
              <exon start="50969" stop="50656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51334" stop="51091"/>
              <exon start="50969" stop="50738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51334" stop="51091"/>
              <exon start="50969" stop="50803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51334" stop="51091"/>
              <exon start="50969" stop="50888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTGATCCAATTCAATCATATGCAAAGTTGCCAAGCTACTTTCACATACTAGAGGCGACTTACCCTGGTTCTCATATAAGATTTCACAAATCAGAGGATGACCGTTTTTTATATGCGTTTGTAGCTTTGTTCACCTCGATAAAAGGATGGGAATATTGTAGACCAATTGTAGTTGTTGATGGAACTTTCTTAAAAGGAGCATACAAAGGGACACTGTTAACCGCTAATACCTTAGATGCAGCAG : GGAGTATATTGCCACTTGCTTATGCTATTGTCGATTCAGAGAATGATTCATCTTGGGGGTGGTTTTTTGAGCAATTCAGAGATGCATTTGGTCAAAGACCAGAGATGTGTATCGTTTCCGATAGGCATGCAAGCATTATTAAGGCAGTTTCAACAGTTTATGATGAAGTACCTCATTTTGCATGTATGTGGCACTTACTGCAAAACATAATGAAAAATTTCAGAAGAAGTCAACAAAGGGTCACTGAGTTGTTCTACTCTATGGCAAAAACATACACCATGACAGAATTTAATCAATGTATGACAATGGTTGAGAAGATAGATAAGAGGATCAAAGATTACTTGTTGAACATTGGATACAACAAATGGTCACGTGTGCATGCTGAAGTAAACAGAACTTGGATAATGACATCAAATATAGCAGAATCAGTCAATTCACGAACAAGACATGCCAAAGTTCTTACAGTCTTGCAACTCTTGGAAT</gDNA_template>
            <first_frame> G  *  S  N  S  I  I  C  K  V  A  K  L  L  S  H  T  R  G  D  L  P  W  F  S  Y  K  I  S  Q  I  R  G  *  P  F  F  I  C  V  C  S  F  V  H  L  D  K  R  M  G  I  L  *  T  N  C  S  C  *  W  N  F  L  K  R  S  I  Q  R  D  T  V  N  R  *  Y  L  R  C  S  R :   E  Y  I  A  T  C  L  C  Y  C  R  F  R  E  *  F  I  L  G  V  V  F  *  A  I  Q  R  C  I  W  S  K  T  R  D  V  Y  R  F  R  *  A  C  K  H  Y  *  G  S  F  N  S  L  *  *  S  T  S  F  C  M  Y  V  A  L  T  A  K  H  N  E  K  F  Q  K  K  S  T  K  G  H  *  V  V  L  L  Y  G  K  N  I  H  H  D  R  I  *  S  M  Y  D  N  G  *  E  D  R  *  E  D  Q  R  L  L  V  E  H  W  I  Q  Q  M  V  T  C  A  C  *  S  K  Q  N  L  D  N  D  I  K  Y  S  R  I  S  Q  F  T  N  K  T  C  Q  S  S  Y  S  L  A  T  L  G   </first_frame>
            <second_frame>  G  D  P  I  Q  S  Y  A  K  L  P  S  Y  F  H  I  L  E  A  T  Y  P  G  S  H  I  R  F  H  K  S  E  D  D  R  F  L  Y  A  F  V  A  L  F  T  S  I  K  G  W  E  Y  C  R  P  I  V  V  V  D  G  T  F  L  K  G  A  Y  K  G  T  L  L  T  A  N  T  L  D  A  A   : G  S  I  L  P  L  A  Y  A  I  V  D  S  E  N  D  S  S  W  G  W  F  F  E  Q  F  R  D  A  F  G  Q  R  P  E  M  C  I  V  S  D  R  H  A  S  I  I  K  A  V  S  T  V  Y  D  E  V  P  H  F  A  C  M  W  H  L  L  Q  N  I  M  K  N  F  R  R  S  Q  Q  R  V  T  E  L  F  Y  S  M  A  K  T  Y  T  M  T  E  F  N  Q  C  M  T  M  V  E  K  I  D  K  R  I  K  D  Y  L  L  N  I  G  Y  N  K  W  S  R  V  H  A  E  V  N  R  T  W  I  M  T  S  N  I  A  E  S  V  N  S  R  T  R  H  A  K  V  L  T  V  L  Q  L  L  E  </second_frame>
            <third_frame>   V  I  Q  F  N  H  M  Q  S  C  Q  A  T  F  T  Y  *  R  R  L  T  L  V  L  I  *  D  F  T  N  Q  R  M  T  V  F  Y  M  R  L  *  L  C  S  P  R  *  K  D  G  N  I  V  D  Q  L  *  L  L  M  E  L  S  *  K  E  H  T  K  G  H  C  *  P  L  I  P  *  M  Q  Q  :  G  V  Y  C  H  L  L  M  L  L  S  I  Q  R  M  I  H  L  G  G  G  F  L  S  N  S  E  M  H  L  V  K  D  Q  R  C  V  S  F  P  I  G  M  Q  A  L  L  R  Q  F  Q  Q  F  M  M  K  Y  L  I  L  H  V  C  G  T  Y  C  K  T  *  *  K  I  S  E  E  V  N  K  G  S  L  S  C  S  T  L  W  Q  K  H  T  P  *  Q  N  L  I  N  V  *  Q  W  L  R  R  *  I  R  G  S  K  I  T  C  *  T  L  D  T  T  N  G  H  V  C  M  L  K  *  T  E  L  G  *  *  H  Q  I  *  Q  N  Q  S  I  H  E  Q  D  M  P  K  F  L  Q  S  C  N  S  W  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51334" stop="51091"/>
                    <exon start="50969" stop="50488"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDPIQSYAKLPSYFHILEATYPGSHIRFHKSEDDRFLYAFVALFTSIKGWEYCRPIVVVDGTFLKGAYKGTLLTANTLDAAGSILPLAYAIVDSENDSSWGWFFEQFRDAFGQRPEMCIVSDRHASIIKAVSTVYDEVPHFACMWHLLQNIMKNFRRSQQRVTELFYSMAKTYTMTEFNQCMTMVEKIDKRIKDYLLNIGYNKWSRVHAEVNRTWIMTSNIAESVNSRTRHAKVLTVLQLLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52434" PGL_stop="53502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52434" e_stop="52727"/>
            <exon e_start="52959" e_stop="53014"/>
            <exon e_start="53093" e_stop="53502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.881"/>
          <exon-intron don_prob="0.000" acc_prob="0.951" e_score="0.982"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.881">
            <gDNA_exon_boundary e_start="52434" e_stop="52727" e_length="294"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52728" i_stop="52958" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="52959" e_stop="53014" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="53015" i_stop="53092" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.954">
            <gDNA_exon_boundary e_start="53093" e_stop="53502" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52434" stop="52727"/>
              <exon start="52959" stop="53014"/>
              <exon start="53093" stop="53238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253404" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52600" stop="52727"/>
              <exon start="52959" stop="53014"/>
              <exon start="53093" stop="53502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52639" stop="52727"/>
              <exon start="52959" stop="53014"/>
              <exon start="53093" stop="53502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243672" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAATAAAATCTAAATTAAAAATTTATCACACAAATCCTAACAAGTGAATCAAACATGAAAATAAGTTGTATTACACATATGCAAACAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAGATGCTAACAAGTGAATTAAAACTGAATTGAAGTTGAATTACACATATGCTAACAAGTGAATTAAACTTGAATTAAAGTTGTATTACACAGATGTTAACAAGTGAATTAAATCAGAATTAAAGTTGTATTACACGGATGCTAACAAGTGAACCAAAACTGAATTGAAGTT : GTATTACACAAATGCTAAAAAGTGAATTAAACCTGAATTAAAGTTGTATTACACAG : ATGCTAACAAGAGATCATACTTATTAGAGAAGAGAACTGAATACCAGACACTCACAGGAACTTGAATCAAACAAAATCTCAACATAAATCATCAAACAAAAAGGCACACAAGTAGCGTAAACATAAATCAAACGAAATCTCAACATAAATTCACACAAAAAGAAGAAAGGCGTAACGATCTGGGCACTGTCAAGACCACAATTGCAAGCTCACATTAAAGGATCAGTTAAGTGCAAAGTAGACCAACAAAAATCGCAGAATGCAGTGCAAGTAACCTAAATTAACAGATCTTACTCAACACTAACCTTTAAATTGCAATGGCGAGAGAAAATTGAAGTCGCCGGAAAAAAATTGCAGTTGCGAGAGAGAGAAAAAATTGCAGTCGCGAGAGAGAAGAAAAAATTGCAGTC</gDNA_template>
            <first_frame> L  N  K  I  *  I  K  N  L  S  H  K  S  *  Q  V  N  Q  T  *  K  *  V  V  L  H  I  C  K  Q  V  N  *  T  *  I  K  V  V  L  H  R  C  *  Q  V  N  *  N  *  I  E  V  E  L  H  I  C  *  Q  V  N  *  T  *  I  K  V  V  L  H  R  C  *  Q  V  N  *  I  R  I  K  V  V  L  H  G  C  *  Q  V  N  Q  N  *  I  E  V  :  V  L  H  K  C  *  K  V  N  *  T  *  I  K  V  V  L  H  R :   C  *  Q  E  I  I  L  I  R  E  E  N  *  I  P  D  T  H  R  N  L  N  Q  T  K  S  Q  H  K  S  S  N  K  K  A  H  K  *  R  K  H  K  S  N  E  I  S  T  *  I  H  T  K  R  R  K  A  *  R  S  G  H  C  Q  D  H  N  C  K  L  T  L  K  D  Q  L  S  A  K  *  T  N  K  N  R  R  M  Q  C  K  *  P  K  L  T  D  L  T  Q  H  *  P  L  N  C  N  G  E  R  K  L  K  S  P  E  K  N  C  S  C  E  R  E  K  K  L  Q  S  R  E  R  R  K  N  C  S  </first_frame>
            <second_frame>  L  I  K  S  K  L  K  I  Y  H  T  N  P  N  K  *  I  K  H  E  N  K  L  Y  Y  T  Y  A  N  K  *  I  K  P  E  L  K  L  Y  Y  T  D  A  N  K  *  I  K  T  E  L  K  L  N  Y  T  Y  A  N  K  *  I  K  L  E  L  K  L  Y  Y  T  D  V  N  K  *  I  K  S  E  L  K  L  Y  Y  T  D  A  N  K  *  T  K  T  E  L  K  L :   Y  Y  T  N  A  K  K  *  I  K  P  E  L  K  L  Y  Y  T   : D  A  N  K  R  S  Y  L  L  E  K  R  T  E  Y  Q  T  L  T  G  T  *  I  K  Q  N  L  N  I  N  H  Q  T  K  R  H  T  S  S  V  N  I  N  Q  T  K  S  Q  H  K  F  T  Q  K  E  E  R  R  N  D  L  G  T  V  K  T  T  I  A  S  S  H  *  R  I  S  *  V  Q  S  R  P  T  K  I  A  E  C  S  A  S  N  L  N  *  Q  I  L  L  N  T  N  L  *  I  A  M  A  R  E  N  *  S  R  R  K  K  I  A  V  A  R  E  R  K  N  C  S  R  E  R  E  E  K  I  A  V </second_frame>
            <third_frame>   *  *  N  L  N  *  K  F  I  T  Q  I  L  T  S  E  S  N  M  K  I  S  C  I  T  H  M  Q  T  S  E  L  N  L  N  *  S  C  I  T  Q  M  L  T  S  E  L  K  L  N  *  S  *  I  T  H  M  L  T  S  E  L  N  L  N  *  S  C  I  T  Q  M  L  T  S  E  L  N  Q  N  *  S  C  I  T  R  M  L  T  S  E  P  K  L  N  *  S   : C  I  T  Q  M  L  K  S  E  L  N  L  N  *  S  C  I  T  Q  :  M  L  T  R  D  H  T  Y  *  R  R  E  L  N  T  R  H  S  Q  E  L  E  S  N  K  I  S  T  *  I  I  K  Q  K  G  T  Q  V  A  *  T  *  I  K  R  N  L  N  I  N  S  H  K  K  K  K  G  V  T  I  W  A  L  S  R  P  Q  L  Q  A  H  I  K  G  S  V  K  C  K  V  D  Q  Q  K  S  Q  N  A  V  Q  V  T  *  I  N  R  S  Y  S  T  L  T  F  K  L  Q  W  R  E  K  I  E  V  A  G  K  K  L  Q  L  R  E  R  E  K  I  A  V  A  R  E  K  K  K  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0103M07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="60960" PGL_stop="68552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60960" e_stop="61029"/>
            <exon e_start="68144" e_stop="68552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.871"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.871">
            <gDNA_exon_boundary e_start="60960" e_stop="61029" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61030" i_stop="68143" i_length="7114"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="68144" e_stop="68552" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60960" stop="61029"/>
              <exon start="68144" stop="68311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60961" stop="61029"/>
              <exon start="68144" stop="68552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACATAGATTTAGGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGA : GGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAGAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATCGAGACTTCAGTCCTCATGTGTGAACTTCACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTATTCGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTTAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCTTCAACTCAATAGTAACTCTAGCCAGTCTTTATTATTCCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M   : R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  E  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  T  S  V  L  M  C  E  L  H  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  F  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  *  *  L  *  P  V  F  I  I  P  D  I  R  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  E  P  T  H  R  F  R  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  :  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  S  R  L  Q  S  S  C  V  N  F  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  S  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  L  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  L  L  F  R  I  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  H  I  D  L  G  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E :   G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  R  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  R  D  F  S  P  H  V  *  T  S  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  I  R  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  *  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  A  I  V  F  N  S  I  V  T  L  A  S  L  Y  Y  S  G  Y  Q  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0103M07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62059" e_stop="62612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="62059" e_stop="62612" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62059" stop="62612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACAAGTGCGAAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCCAGTGTTCTCTGCACCAGCACCACAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGCCTAACTAATGGGCCTATAATGACAAGTGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  N  *  T  S  A  K  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  V  *  S  G  P  D  T  P  S  V  L  C  T  S  T  T  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  P  N  *  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  R  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  Q  V  R  N  E  E  M  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  N  G  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  L  N  K  C  E  M  R  K  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  C  L  I  R  A  R  H  P  Q  C  S  L  H  Q  H  H  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  A  *  L  M  G  L  *  *  Q  V  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  S  S  V  N  Q  *  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62060" stop="62611"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGETEQVRNEEMPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATMAPRMDVPLEIGTFPRLTNGPIMTSDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHIECQPIEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="61700" e_stop="61985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="61700" e_stop="61985" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61700" stop="61985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTAAGAACTAGAGCAACGACTACGTCAACACCAACACCGGCCAGACAAGAAACAACGGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  S  T  P  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  *  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  R  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  K  N  *  S  N  D  Y  V  N  T  N  T  G  Q  T  R  N  N  G  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0103M07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="64701" PGL_stop="61992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64701" e_stop="61992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="64701" e_stop="61992" e_length="2710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64701" stop="63990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64701" stop="64107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64701" stop="64177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64630" stop="63952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64630" stop="64273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64182" stop="63524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64113" stop="63352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64113" stop="63453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63710" stop="63380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63503" stop="62945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63499" stop="62736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63419" stop="62630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63417" stop="62884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63343" stop="62646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62782" stop="62063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62779" stop="62116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62424" stop="61992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCCGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACAGATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTAATAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCATACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTATAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTGTAACTCGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAAGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTTACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCATTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGTGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTCGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTCGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  R  H  I  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  L  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  Y  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  S  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  R  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  I  I  I  F  L  A  R  R  K  E  T  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  Y  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  P  F  W  *  P  L  L  P  R  P  P  R  P  P  E  K  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  G  L  G  Q  F  L  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  I  I  C  P  S  E  K  C  *  P  V  *  S  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  Y  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  R  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  L  V  I  I  G  P  L  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  C  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  R  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  S  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  W  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  I  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  A  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  D  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  *  *  S  F  S  *  H  E  E  R  R  R  C  G  P  D  W  K  C  S  H  P  P  I  Q  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  I  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  P  Q  F  A  H  Y  L  C  R  F  G  D  H  Y  Y  L  D  H  H  A  L  Q  K  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  C  N  S  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  R  S  Y  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  S  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  D  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  H  *  L  G  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  V  V  L  V  Q  R  T  L  G  V  S  G  P  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  S  P  L  F  F </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  P  T  H  *  W  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  Q  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  N  N  H  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  Y  K  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  L  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  P  S  R  K  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  V  T  R  S  G  T  I  S  P  N  M  S  N  L  P  T  S  I  T  F  F  G  V  D  H  M  P  L  G  E  V  L  T  G  L  K  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  L  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  R  P  I  S  *  A  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  W  C  W  C  R  E  H  W  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  S  H  L  F  S  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  R  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62341" stop="61994"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AWKRAYFQWNIHAGSHSSRMLYLRSLWCWCREHWGCLALIRQPAKISQNLIDHLWGRLGWHFLISHLFSFPILPFSYYLLSRWRSHCPSIRWARCSSSSPRGRPPTTSTTAPRRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63271" stop="63017"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGPSLPITSAVLVTTITSTTTPSRKTASTMTTSTSSYWGSVTRSGTISPNMSNLPTSITFFGVDHMPLGEVLTGLKWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63975" stop="63730"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNRSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLIIIFLARRKETMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64414" stop="64199"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSRRVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62961" stop="62767"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRSLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSYLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64701" e_stop="63603"/>
            <exon e_start="62858" e_stop="61992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.928"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="64701" e_stop="63603" e_length="1099"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63602" i_stop="62859" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="62858" e_stop="61992" e_length="867"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64701" stop="63990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64701" stop="64107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64701" stop="64177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64630" stop="63952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64630" stop="64273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64130" stop="63603"/>
              <exon start="62858" stop="62686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62782" stop="62063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62779" stop="62116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62424" stop="61992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCCGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACTGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTATCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAGCAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACAGATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTAATAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCATACAAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTT : CTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTTACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCGATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCACTTGTCATTATAGGCCCATTAGTTAGGCGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGTGGTGCTGGTGCAGAGAACACTGGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTCGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTCGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  R  H  I  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  L  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  Y  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  S  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  R  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  I  I  I  F  L  A  R  R  K  E  T  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I   : S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  Y  L  N  P  F  T  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  R  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  L  V  I  I  G  P  L  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  C  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  R  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  S  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  W  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  I  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  A  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  D  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  *  *  S  F  S  *  H  E  E  R  R  R  C  G  P  D  W  K  C  S  H  P  P  I  Q  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  :  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  D  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  H  *  L  G  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  P  E  P  V  V  L  V  Q  R  T  L  G  V  S  G  P  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  P  S  P  L  F  F </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  P  T  H  *  W  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  Q  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  N  N  H  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  Y  K  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F :   L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  L  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  T  C  H  Y  R  P  I  S  *  A  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  W  C  W  C  R  E  H  W  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  S  H  L  F  S  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  P  R  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62341" stop="61994"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AWKRAYFQWNIHAGSHSSRMLYLRSLWCWCREHWGCLALIRQPAKISQNLIDHLWGRLGWHFLISHLFSFPILPFSYYLLSRWRSHCPSIRWARCSSSSPRGRPPTTSTTAPRRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63975" stop="63730"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNRSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLIIIFLARRKETMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63729" stop="63603"/>
                    <exon start="62858" stop="62767"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSHTNGSVPGLANVTVLALQSKIANCGESQVIPRITSKSSISWKDFAVAAICKAEIRNSYLNPFTNRRIRS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64414" stop="64199"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSRRVQIWLKNPVHQAHERSRGIRKTKGHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="66182" PGL_stop="66006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66182" e_stop="66006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="66182" e_stop="66006" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66182" stop="66006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGTCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGATAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTTCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  V  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  D  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  F  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  S  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  I  R  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  S  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0103M07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="69320" PGL_stop="75229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69334" e_stop="69621"/>
            <exon e_start="74106" e_stop="74546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69334" e_stop="69621" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="69622" i_stop="74105" i_length="4484"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74106" e_stop="74546" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69334" stop="69621"/>
              <exon start="74106" stop="74543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69334" stop="69621"/>
              <exon start="74106" stop="74542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69335" stop="69621"/>
              <exon start="74106" stop="74426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69530" stop="69621"/>
              <exon start="74106" stop="74546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAG : GAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGCGTATGTTTCTGCTTATACTGCTCGCTGTATCAACTATTGAACTGTACTACTACTTGAACTTGCTCGTTTATTGGATATTTCTTTTTGGCTCCTTGTTTGATACATGTCTCTTTTATCTTGGTTGTTTCTTTGCTGCTTGTCATCGGCAGAGCAATAACTAATAGAAAGCTTTGTAAAATAAAATTTTGTTAAATCAAAATCCAGAGGATGTGATTGATTTATTTTAAAAAAAA</gDNA_template>
            <first_frame> L  S  F  F  L  *  E  S  F  Q  L  F  A  I  G  K  S  F  L  V  V  M  D  *  T  I  N  Q  S  L  *  S  L  F  L  S  L  T  A  W  P  L  P  S  L  S  R  I  L  W  F  D  F  I  K  F  L  V  R  *  L  *  G  F  F  P  V  L  C  T  V  K  R  E  V  F  F  W  F  S  S  *  V  P  P  S  R  W  L  L  Q  F  L  L  R  *  :  E  Q  N  Y  K  L  L  A  G  T  L  T  Y  A  F  C  *  D  L  N  H  Q  H  G  F  E  C  L  A  T  A  R  G  *  R  R  D  F  W  T  T  I  R  R  *  T  T  R  T  Y  F  T  *  *  *  A  C  R  L  C  H  E  C  C  R  D  F  T  S  R  M  F  L  L  I  L  L  A  V  S  T  I  E  L  Y  Y  Y  L  N  L  L  V  Y  W  I  F  L  F  G  S  L  F  D  T  C  L  F  Y  L  G  C  F  F  A  A  C  H  R  Q  S  N  N  *  *  K  A  L  *  N  K  I  L  L  N  Q  N  P  E  D  V  I  D  L  F  *  K  K </first_frame>
            <second_frame>  S  L  S  F  C  E  R  A  F  N  C  S  Q  S  V  N  P  F  S  S  S  W  I  E  P  *  I  N  L  S  D  L  S  F  S  L  *  Q  H  G  H  F  L  L  S  L  G  F  C  G  L  I  S  *  N  F  *  L  G  N  C  R  G  F  F  Q  F  F  V  R  *  S  V  K  F  S  S  G  F  R  A  E  F  L  Q  V  V  G  F  C  N  F  F  Y  V  R :   S  R  T  I  N  C  L  Q  E  P  *  H  M  L  S  V  E  T  *  I  T  S  M  D  L  N  A  L  P  Q  P  E  D  D  D  E  I  F  G  Q  Q  L  E  D  E  P  Q  E  P  I  L  R  S  D  E  R  A  D  Y  V  T  S  A  V  E  I  S  R  R  V  C  F  C  L  Y  C  S  L  Y  Q  L  L  N  C  T  T  T  *  T  C  S  F  I  G  Y  F  F  L  A  P  C  L  I  H  V  S  F  I  L  V  V  S  L  L  L  V  I  G  R  A  I  T  N  R  K  L  C  K  I  K  F  C  *  I  K  I  Q  R  M  *  L  I  Y  F  K  K   </second_frame>
            <third_frame>   L  F  L  F  V  R  E  L  S  I  V  R  N  R  *  I  L  S  R  R  H  G  L  N  H  K  S  I  S  L  I  S  L  S  L  S  N  S  M  A  T  S  F  S  L  *  D  F  V  V  *  F  H  K  I  S  S  *  V  I  V  G  V  F  S  S  S  L  Y  G  E  A  *  S  F  L  L  V  F  E  L  S  S  S  K  S  L  A  S  A  I  S  F  T  L   : G  A  E  L  *  I  A  C  R  N  L  D  I  C  F  L  L  R  L  E  S  P  A  W  I  *  M  P  C  H  S  Q  R  M  T  T  R  F  L  D  N  N  *  K  M  N  H  K  N  L  F  Y  V  V  M  S  V  Q  I  M  S  R  V  L  *  R  F  H  V  A  Y  V  S  A  Y  T  A  R  C  I  N  Y  *  T  V  L  L  L  E  L  A  R  L  L  D  I  S  F  W  L  L  V  *  Y  M  S  L  L  S  W  L  F  L  C  C  L  S  S  A  E  Q  *  L  I  E  S  F  V  K  *  N  F  V  K  S  K  S  R  G  C  D  *  F  I  L  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74164" stop="74370"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITSMDLNALPQPEDDDEIFGQQLEDEPQEPILRSDERADYVTSAVEISRRVCFCLYCSLYQLLNCTTT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74271" stop="74474"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACRLCHECCRDFTSRMFLLILLAVSTIELYYYLNLLVYWIFLFGSLFDTCLFYLGCFFAACHRQSNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69320" e_stop="69621"/>
            <exon e_start="74106" e_stop="74313"/>
            <exon e_start="75119" e_stop="75229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.884"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="0.957"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.884">
            <gDNA_exon_boundary e_start="69320" e_stop="69621" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="69622" i_stop="74105" i_length="4484"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="74106" e_stop="74313" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="74314" i_stop="75118" i_length="805"/>
          </intron>
          <exon e_serial="3" e_score="0.919">
            <gDNA_exon_boundary e_start="75119" e_stop="75229" e_length="111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69320" stop="69621"/>
              <exon start="74106" stop="74313"/>
              <exon start="75119" stop="75229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583123" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTACGTACTCTCTCTCTCTTTCTTTTTGTGAGAGAGCTTTCAATTGTTCGCAATCGGTAAATCCTTTCTCGTCGTCATGGATTGAACCATAAATCAATCTCTCTGATCTCTCTTTCTCTCTCTAACAGCATGGCCACTTCCTTCTCTCTCTAGGATTTTGTGGTTTGATTTCATAAAATTTCTAGTTAGGTAATTGTAGGGGTTTTTTCCAGTTCTTTGTACGGTGAAGCGTGAAGTTTTCTTCTGGTTTTCGAGCTGAGTTCCTCCAAGTCGTTGGCTTCTGCAATTTCTTTTACGTTAG : GAGCAGAACTATAAATTGCTTGCAGGAACCTTGACATATGCTTTCTGTTGAGACTTGAATCACCAGCATGGATTTGAATGCCTTGCCACAGCCAGAGGATGACGACGAGATTTTTGGACAACAATTAGAAGATGAACCACAAGAACCTATTTTACGTAGTGATGAGCGTGCAGATTATGTCACGAGTGCTGTAGAGATTTCACGTCGC : GAGCGGGAGGAAAGGATTCAAAAACTTAAAAGACAACATCCAGATGATAGACCAGCATATCCATCTCAACCACGAATGCAGGATGAGATCTTTCAGCCAAAGAGACAGAAA</gDNA_template>
            <first_frame> F  T  Y  S  L  S  L  S  F  C  E  R  A  F  N  C  S  Q  S  V  N  P  F  S  S  S  W  I  E  P  *  I  N  L  S  D  L  S  F  S  L  *  Q  H  G  H  F  L  L  S  L  G  F  C  G  L  I  S  *  N  F  *  L  G  N  C  R  G  F  F  Q  F  F  V  R  *  S  V  K  F  S  S  G  F  R  A  E  F  L  Q  V  V  G  F  C  N  F  F  Y  V  R :   S  R  T  I  N  C  L  Q  E  P  *  H  M  L  S  V  E  T  *  I  T  S  M  D  L  N  A  L  P  Q  P  E  D  D  D  E  I  F  G  Q  Q  L  E  D  E  P  Q  E  P  I  L  R  S  D  E  R  A  D  Y  V  T  S  A  V  E  I  S  R  R  :  E  R  E  E  R  I  Q  K  L  K  R  Q  H  P  D  D  R  P  A  Y  P  S  Q  P  R  M  Q  D  E  I  F  Q  P  K  R  Q  K </first_frame>
            <second_frame>  L  R  T  L  S  L  F  L  F  V  R  E  L  S  I  V  R  N  R  *  I  L  S  R  R  H  G  L  N  H  K  S  I  S  L  I  S  L  S  L  S  N  S  M  A  T  S  F  S  L  *  D  F  V  V  *  F  H  K  I  S  S  *  V  I  V  G  V  F  S  S  S  L  Y  G  E  A  *  S  F  L  L  V  F  E  L  S  S  S  K  S  L  A  S  A  I  S  F  T  L   : G  A  E  L  *  I  A  C  R  N  L  D  I  C  F  L  L  R  L  E  S  P  A  W  I  *  M  P  C  H  S  Q  R  M  T  T  R  F  L  D  N  N  *  K  M  N  H  K  N  L  F  Y  V  V  M  S  V  Q  I  M  S  R  V  L  *  R  F  H  V  A :   S  G  R  K  G  F  K  N  L  K  D  N  I  Q  M  I  D  Q  H  I  H  L  N  H  E  C  R  M  R  S  F  S  Q  R  D  R   </second_frame>
            <third_frame>   Y  V  L  S  L  S  F  F  L  *  E  S  F  Q  L  F  A  I  G  K  S  F  L  V  V  M  D  *  T  I  N  Q  S  L  *  S  L  F  L  S  L  T  A  W  P  L  P  S  L  S  R  I  L  W  F  D  F  I  K  F  L  V  R  *  L  *  G  F  F  P  V  L  C  T  V  K  R  E  V  F  F  W  F  S  S  *  V  P  P  S  R  W  L  L  Q  F  L  L  R  *  :  E  Q  N  Y  K  L  L  A  G  T  L  T  Y  A  F  C  *  D  L  N  H  Q  H  G  F  E  C  L  A  T  A  R  G  *  R  R  D  F  W  T  T  I  R  R  *  T  T  R  T  Y  F  T  *  *  *  A  C  R  L  C  H  E  C  C  R  D  F  T  S   : R  A  G  G  K  D  S  K  T  *  K  T  T  S  R  *  *  T  S  I  S  I  S  T  T  N  A  G  *  D  L  S  A  K  E  T  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74164" stop="74313"/>
                    <exon start="75119" stop="75229"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITSMDLNALPQPEDDDEIFGQQLEDEPQEPILRSDERADYVTSAVEISRREREERIQKLKRQHPDDRPAYPSQPRMQDEIFQPKRQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="76349" PGL_stop="86876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77719" e_stop="78029"/>
            <exon e_start="78117" e_stop="78323"/>
            <exon e_start="80880" e_stop="80999"/>
            <exon e_start="81222" e_stop="81268"/>
            <exon e_start="83052" e_stop="83214"/>
            <exon e_start="83337" e_stop="83474"/>
            <exon e_start="83606" e_stop="83728"/>
            <exon e_start="83833" e_stop="83931"/>
            <exon e_start="84297" e_stop="84386"/>
            <exon e_start="84695" e_stop="84776"/>
            <exon e_start="86140" e_stop="86270"/>
            <exon e_start="86422" e_stop="86876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.379" e_score="0.961"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.091" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.622" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.741" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.261" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.996" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="77719" e_stop="78029" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.379">
            <gDNA_intron_boundary i_start="78030" i_stop="78116" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78117" e_stop="78323" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78324" i_stop="80879" i_length="2556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80880" e_stop="80999" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.091" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81222" e_stop="81268" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.952">
            <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83052" e_stop="83214" e_length="163"/>
          </exon>
          <intron i_serial="5" don_prob="0.622" acc_prob="0.996">
            <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83337" e_stop="83474" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.790" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="83606" e_stop="83728" e_length="123"/>
          </exon>
          <intron i_serial="7" don_prob="0.834" acc_prob="0.972">
            <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="83833" e_stop="83931" e_length="99"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="83932" i_stop="84296" i_length="365"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="84297" e_stop="84386" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.741" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84387" i_stop="84694" i_length="308"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="84695" e_stop="84776" e_length="82"/>
          </exon>
          <intron i_serial="10" don_prob="0.261" acc_prob="0.968">
            <gDNA_intron_boundary i_start="84777" i_stop="86139" i_length="1363"/>
          </intron>
          <exon e_serial="11" e_score="0.992">
            <gDNA_exon_boundary e_start="86140" e_stop="86270" e_length="131"/>
          </exon>
          <intron i_serial="11" don_prob="0.874" acc_prob="0.996">
            <gDNA_intron_boundary i_start="86271" i_stop="86421" i_length="151"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="86422" e_stop="86876" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77719" stop="78029"/>
              <exon start="78117" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77922" stop="78029"/>
              <exon start="78117" stop="78303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77943" stop="78029"/>
              <exon start="78117" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77943" stop="78029"/>
              <exon start="78117" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77944" stop="78029"/>
              <exon start="78117" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78148" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78148" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78160" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78171" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80949" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80962" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81231" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83127" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83931"/>
              <exon start="84297" stop="84386"/>
              <exon start="84695" stop="84776"/>
              <exon start="86140" stop="86211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83212" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83931"/>
              <exon start="84297" stop="84386"/>
              <exon start="84695" stop="84776"/>
              <exon start="86140" stop="86270"/>
              <exon start="86422" stop="86449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83355" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83931"/>
              <exon start="84297" stop="84386"/>
              <exon start="84695" stop="84776"/>
              <exon start="86140" stop="86270"/>
              <exon start="86422" stop="86449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83409" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83931"/>
              <exon start="84297" stop="84386"/>
              <exon start="84695" stop="84776"/>
              <exon start="86140" stop="86270"/>
              <exon start="86422" stop="86560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83430" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83931"/>
              <exon start="84297" stop="84386"/>
              <exon start="84695" stop="84776"/>
              <exon start="86140" stop="86270"/>
              <exon start="86422" stop="86573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83465" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83931"/>
              <exon start="84297" stop="84386"/>
              <exon start="84695" stop="84776"/>
              <exon start="86140" stop="86178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83465" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83931"/>
              <exon start="84297" stop="84318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83895" stop="83931"/>
              <exon start="84297" stop="84386"/>
              <exon start="84695" stop="84776"/>
              <exon start="86140" stop="86270"/>
              <exon start="86422" stop="86712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84306" stop="84386"/>
              <exon start="84695" stop="84776"/>
              <exon start="86140" stop="86270"/>
              <exon start="86422" stop="86728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84367" stop="84386"/>
              <exon start="84695" stop="84776"/>
              <exon start="86140" stop="86270"/>
              <exon start="86422" stop="86657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84735" stop="84776"/>
              <exon start="86140" stop="86270"/>
              <exon start="86422" stop="86805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84756" stop="84776"/>
              <exon start="86140" stop="86270"/>
              <exon start="86422" stop="86805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86232" stop="86270"/>
              <exon start="86422" stop="86876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86232" stop="86270"/>
              <exon start="86422" stop="86876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGACCTCTAGTTAGGTTTTCTTAGTATTAGGACTTAGCATTGATGAGAAGCGTGTTGTCATATGTGTTTTACTCTGTTCAAGGCTTTAAGCAAATAAAGGCTAACTTTATCACATCTTCGCTGAATGTTATATCCTATTGAATGGAACTTGATACTAATATTTATGGCTTCTATGAGGTTTCACAATTTCTTGCCCGTCAGAAACATGCAAAGAAGTATATTCTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAG : GCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACT : GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG : GGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG : GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA : GGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG : CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG : GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG : GGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAG : GTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAG : ATGGTTCTGATCCATCAGCTTACTCCGGTAAAATAATAGAGTGCTCTTTTGACACTGATGACCAAAAATGGATATGGATGAGGACCAGAGTCGACAAAGGAACTCCGAATGACTACAATACGTACAGAAAG : GTGATGAGAAGTATTACCGACAACATCACTGAAGAAGTGTTGTTGAATGAGATTTATGAGATCATTCGACTGCCAATGTATGCGGATAGGATACAGAGTGATAGCAAAGCTCATGTACGACGCAGATGAATGAATTGATGCTTAGCTGTGTTCATCTAATATCATTAGAAGGGCATGTACAAGCAGCCTTAGTTCCTAGGCGTGTTTTGTGTGCTATACTGGGTTTGTTATATGGATCCAGTTGGCACACTGTAAACTTAGTGGTCCATGACTCGGGCCTTGTGTTTTTTCTTCGTTAGCGATGAGGTTGTCTTGTATATTATAGTTGTTTTAGTTCACTTTTTTTTTACCTGGTTACTGTTATGTTGTCTAAGGTAGGTTTTAAACTTTCAAGCTCTATGCGATCTATTCCCTTGTGAATACAAAATTGTTCTACTAGTTATTTCTAGTTTATC</gDNA_template>
            <first_frame> V  D  L  *  L  G  F  L  S  I  R  T  *  H  *  *  E  A  C  C  H  M  C  F  T  L  F  K  A  L  S  K  *  R  L  T  L  S  H  L  R  *  M  L  Y  P  I  E  W  N  L  I  L  I  F  M  A  S  M  R  F  H  N  F  L  P  V  R  N  M  Q  R  S  I  F  L  F  I  A  H  M  G  I  I  A  L  G  L  *  S  F  I  I  L  C  A  R  C  Q  Y  L  S  V  R :   Q  L  K  F  F  L  T  L  V  L  L  G  S  I  S  Q  T  I  S  M  P  Y  M  P  S  I  M  R  K  N  L  K  W  L  F  V  H  Q  H  L  S  G  K  N  L  L  S  L  I  *  M  V  M  Q  C  Q  M  T  M  M  M  E  V  L  Q  L  L  *  L :   T  I  L  K  H  K  *  *  P  Q  M  M  T  F  W  E  M  Q  S  H  K  I  S  K  I  I  Y  D  S  S  V  I  K  H  *  K  *  P  Q  G :   V  E  A  H  N  F  L  A  H  I  Q  S  L  L  T   : G  K  T  C  S  Y  *  G  S  V  T  T  M  P  L  G  R  L  M  G  H  G  I  *  C  *  S  R  W  M  V  V  S  *  L  I  G  I  S  T  F  G  G  F  R  *  D  F  L  A  D  T  L  M  K :   V  *  P  K  R  P  T  T  S  L  Y  L  M  E  R  W  *  L  I  L  C  L  T  H  R  S  R  K  G  D  T  *  F  M  I  *  L  L  *  T  N  C  L  S  L  S :   D  P  F  M  N  G  G  E  *  S  T  K  K  *  L  V  Q  G  I  M  N  V  N  I  Y  T  R  V  E  T  L  I  I  D  M  S  W  S  L  S  G :   *  G  G  R  I  F  F  C  S  L  L  S  R  N  F  S  K  N  L  S  Q  S  F  H  M  K  L  M  V  L  F  F  R :   V  G  M  I  L  M  F  L  V  R  M  R  V  S  *  S  G  N  T  L  K  *  T  R  S  T  F  S  L  R :   W  L  T  I  V  N  C  F  I  Y  M  N  E  G  R  R  N  *  W  R  G  V  E  L  F  S  Q  :  M  V  L  I  H  Q  L  T  P  V  K  *  *  S  A  L  L  T  L  M  T  K  N  G  Y  G  *  G  P  E  S  T  K  E  L  R  M  T  T  I  R  T  E  R :   *  *  E  V  L  P  T  T  S  L  K  K  C  C  *  M  R  F  M  R  S  F  D  C  Q  C  M  R  I  G  Y  R  V  I  A  K  L  M  Y  D  A  D  E  *  I  D  A  *  L  C  S  S  N  I  I  R  R  A  C  T  S  S  L  S  S  *  A  C  F  V  C  Y  T  G  F  V  I  W  I  Q  L  A  H  C  K  L  S  G  P  *  L  G  P  C  V  F  S  S  L  A  M  R  L  S  C  I  L  *  L  F  *  F  T  F  F  L  P  G  Y  C  Y  V  V  *  G  R  F  *  T  F  K  L  Y  A  I  Y  S  L  V  N  T  K  L  F  Y  *  L  F  L  V  Y  </first_frame>
            <second_frame>  L  T  S  S  *  V  F  L  V  L  G  L  S  I  D  E  K  R  V  V  I  C  V  L  L  C  S  R  L  *  A  N  K  G  *  L  Y  H  I  F  A  E  C  Y  I  L  L  N  G  T  *  Y  *  Y  L  W  L  L  *  G  F  T  I  S  C  P  S  E  T  C  K  E  V  Y  S  C  S  L  H  T  W  A  *  S  H  W  V  Y  D  H  S  L  S  Y  A  H  A  A  N  I  C  Q  S   : G  N  *  N  F  F  *  R  S  S  S  W  D  L  *  A  R  L  Y  R  C  P  I  C  L  L  S  *  E  K  T  *  N  G  C  L  S  T  N  T  *  V  E  K  I  F  *  A  *  F  E  W  *  C  N  A  R  *  R  *  *  W  R  S  C  S  S  F  D   : *  Q  S  *  S  T  S  S  N  L  K  *  *  H  F  G  R  C  N  P  T  R  S  A  K  S  F  T  T  V  L  L  S  S  T  E  N  D  P  R   : G  *  R  P  T  I  S  W  L  T  S  S  L  S  *  Q  :  G  K  L  A  V  I  K  A  A  L  L  L  C  H  L  E  G  *  W  D  T  V  Y  D  A  D  H  D  G  W  L  F  L  N  *  *  A  F  Q  L  S  E  G  S  D  E  I  S  L  Q  T  H  *  *   : R  F  S  R  K  D  P  P  L  H  F  T  *  W  R  D  G  N  *  Y  F  A  *  H  T  E  A  G  K  E  I  P  N  L  *  Y  D  C  F  E  P  I  V  C  H  *   : A  T  L  L  *  T  V  E  N  D  R  Q  R  S  D  W  S  K  E  L  *  T  S  T  Y  I  P  E  *  K  P  L  L  *  I  *  V  G  A  F  Q   : G  E  E  E  G  F  F  S  A  L  Y  C  H  E  T  S  Q  R  I  Y  P  K  A  F  T  *  S  *  W  S  Y  F  S   : G  L  G  *  S  L  C  S  S  Y  A  *  G  S  L  E  V  E  I  P  *  N  E  L  G  R  L  S  L  *   : G  G  *  R  S  *  I  A  L  S  T  *  T  R  E  E  E  T  N  G  G  E  *  S  C  F  P  R :   W  F  *  S  I  S  L  L  R  *  N  N  R  V  L  F  *  H  *  *  P  K  M  D  M  D  E  D  Q  S  R  Q  R  N  S  E  *  L  Q  Y  V  Q  K   : G  D  E  K  Y  Y  R  Q  H  H  *  R  S  V  V  E  *  D  L  *  D  H  S  T  A  N  V  C  G  *  D  T  E  *  *  Q  S  S  C  T  T  Q  M  N  E  L  M  L  S  C  V  H  L  I  S  L  E  G  H  V  Q  A  A  L  V  P  R  R  V  L  C  A  I  L  G  L  L  Y  G  S  S  W  H  T  V  N  L  V  V  H  D  S  G  L  V  F  F  L  R  *  R  *  G  C  L  V  Y  Y  S  C  F  S  S  L  F  F  Y  L  V  T  V  M  L  S  K  V  G  F  K  L  S  S  S  M  R  S  I  P  L  *  I  Q  N  C  S  T  S  Y  F  *  F  I </second_frame>
            <third_frame>   *  P  L  V  R  F  S  *  Y  *  D  L  A  L  M  R  S  V  L  S  Y  V  F  Y  S  V  Q  G  F  K  Q  I  K  A  N  F  I  T  S  S  L  N  V  I  S  Y  *  M  E  L  D  T  N  I  Y  G  F  Y  E  V  S  Q  F  L  A  R  Q  K  H  A  K  K  Y  I  L  V  H  C  T  H  G  H  N  R  T  G  F  M  I  I  H  Y  L  M  R  T  L  P  I  S  V  S  Q  :  A  I  K  I  F  S  D  A  R  P  P  G  I  Y  K  P  D  Y  I  D  A  L  Y  A  F  Y  H  E  K  K  P  E  M  V  V  C  P  P  T  P  E  W  K  K  S  S  E  L  D  L  N  G  D  A  M  P  D  D  D  D  D  G  G  P  A  A  P  L  T  :  D  N  L  E  A  Q  V  V  T  S  N  D  D  I  L  G  D  A  I  P  Q  D  Q  Q  N  H  L  R  Q  F  C  Y  Q  A  L  K  M  T  P  G  :  G  R  G  P  Q  F  P  G  S  H  P  V  S  L  D  R :   E  N  L  Q  L  L  R  Q  R  Y  Y  Y  A  T  W  K  A  D  G  T  R  Y  M  M  L  I  T  M  D  G  C  F  L  I  D  R  H  F  N  F  R  R  V  Q  M  R  F  P  C  R  H  T  N  E  :  G  L  A  E  K  T  H  H  F  T  L  L  D  G  E  M  V  I  D  T  L  P  D  T  Q  K  Q  E  R  R  Y  L  I  Y  D  M  I  A  L  N  Q  L  S  V  I  E  :  R  P  F  Y  E  R  W  R  M  I  D  K  E  V  I  G  P  R  N  Y  E  R  Q  H  I  Y  Q  S  R  N  P  Y  Y  R  Y  E  L  E  P  F  R  :  V  R  R  K  D  F  F  L  L  S  T  V  T  K  L  L  K  E  F  I  P  K  L  S  H  E  A  D  G  L  I  F  Q  :  G  W  D  D  P  Y  V  P  R  T  H  E  G  L  L  K  W  K  Y  P  E  M  N  S  V  D  F  L  F  E  :  V  V  D  D  R  E  L  L  Y  L  H  E  R  G  K  K  K  L  M  E  G  S  R  V  V  F  P   : D  G  S  D  P  S  A  Y  S  G  K  I  I  E  C  S  F  D  T  D  D  Q  K  W  I  W  M  R  T  R  V  D  K  G  T  P  N  D  Y  N  T  Y  R  K  :  V  M  R  S  I  T  D  N  I  T  E  E  V  L  L  N  E  I  Y  E  I  I  R  L  P  M  Y  A  D  R  I  Q  S  D  S  K  A  H  V  R  R  R  *  M  N  *  C  L  A  V  F  I  *  Y  H  *  K  G  M  Y  K  Q  P  *  F  L  G  V  F  C  V  L  Y  W  V  C  Y  M  D  P  V  G  T  L  *  T  *  W  S  M  T  R  A  L  C  F  F  F  V  S  D  E  V  V  L  Y  I  I  V  V  L  V  H  F  F  F  T  W  L  L  L  C  C  L  R  *  V  L  N  F  Q  A  L  C  D  L  F  P  C  E  Y  K  I  V  L  L  V  I  S  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77862" stop="78029"/>
                    <exon start="78117" stop="78323"/>
                    <exon start="80880" stop="80999"/>
                    <exon start="81222" stop="81268"/>
                    <exon start="83052" stop="83214"/>
                    <exon start="83337" stop="83474"/>
                    <exon start="83606" stop="83728"/>
                    <exon start="83833" stop="83931"/>
                    <exon start="84297" stop="84386"/>
                    <exon start="84695" stop="84776"/>
                    <exon start="86140" stop="86270"/>
                    <exon start="86422" stop="86550"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1494</number_coding_nucleotides>
                  <number_encoded_amino_acids>498</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MELDTNIYGFYEVSQFLARQKHAKKYILVHCTHGHNRTGFMIIHYLMRTLPISVSQAIKIFSDARPPGIYKPDYIDALYAFYHEKKPEMVVCPPTPEWKKSSELDLNGDAMPDDDDDGGPAAPLTDNLEAQVVTSNDDILGDAIPQDQQNHLRQFCYQALKMTPGGRGPQFPGSHPVSLDRENLQLLRQRYYYATWKADGTRYMMLITMDGCFLIDRHFNFRRVQMRFPCRHTNEGLAEKTHHFTLLDGEMVIDTLPDTQKQERRYLIYDMIALNQLSVIERPFYERWRMIDKEVIGPRNYERQHIYQSRNPYYRYELEPFRVRRKDFFLLSTVTKLLKEFIPKLSHEADGLIFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFEVVDDRELLYLHERGKKKLMEGSRVVFPDGSDPSAYSGKIIECSFDTDDQKWIWMRTRVDKGTPNDYNTYRKVMRSITDNITEEVLLNEIYEIIRLPMYADRIQSDSKAHVRRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86526" stop="86720"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSCTTQMNELMLSCVHLISLEGHVQAALVPRRVLCAILGLLYGSSWHTVNLVVHDSGLVFFLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77719" e_stop="78029"/>
            <exon e_start="78117" e_stop="78323"/>
            <exon e_start="80880" e_stop="80999"/>
            <exon e_start="81222" e_stop="81268"/>
            <exon e_start="83052" e_stop="83214"/>
            <exon e_start="83337" e_stop="83474"/>
            <exon e_start="83606" e_stop="83728"/>
            <exon e_start="83833" e_stop="83931"/>
            <exon e_start="84297" e_stop="84386"/>
            <exon e_start="84695" e_stop="85000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.379" e_score="0.961"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.091" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.622" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.998" e_score="0.986"/>
          <exon-intron don_prob="0.834" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.741" acc_prob="0.998" e_score="0.989"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="77719" e_stop="78029" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.379">
            <gDNA_intron_boundary i_start="78030" i_stop="78116" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78117" e_stop="78323" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78324" i_stop="80879" i_length="2556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80880" e_stop="80999" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.091" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81222" e_stop="81268" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.952">
            <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83052" e_stop="83214" e_length="163"/>
          </exon>
          <intron i_serial="5" don_prob="0.622" acc_prob="0.996">
            <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="83337" e_stop="83474" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.790" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="83606" e_stop="83728" e_length="123"/>
          </exon>
          <intron i_serial="7" don_prob="0.834" acc_prob="0.972">
            <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="83833" e_stop="83931" e_length="99"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="83932" i_stop="84296" i_length="365"/>
          </intron>
          <exon e_serial="9" e_score="0.989">
            <gDNA_exon_boundary e_start="84297" e_stop="84386" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.741" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84387" i_stop="84694" i_length="308"/>
          </intron>
          <exon e_serial="10" e_score="0.990">
            <gDNA_exon_boundary e_start="84695" e_stop="85000" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77719" stop="78029"/>
              <exon start="78117" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77922" stop="78029"/>
              <exon start="78117" stop="78303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77943" stop="78029"/>
              <exon start="78117" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77943" stop="78029"/>
              <exon start="78117" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77944" stop="78029"/>
              <exon start="78117" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78148" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78148" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78160" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78171" stop="78323"/>
              <exon start="80880" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80949" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80962" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81231" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83465" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83931"/>
              <exon start="84297" stop="84318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83845" stop="83931"/>
              <exon start="84297" stop="84386"/>
              <exon start="84695" stop="85000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGACCTCTAGTTAGGTTTTCTTAGTATTAGGACTTAGCATTGATGAGAAGCGTGTTGTCATATGTGTTTTACTCTGTTCAAGGCTTTAAGCAAATAAAGGCTAACTTTATCACATCTTCGCTGAATGTTATATCCTATTGAATGGAACTTGATACTAATATTTATGGCTTCTATGAGGTTTCACAATTTCTTGCCCGTCAGAAACATGCAAAGAAGTATATTCTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAG : GCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACT : GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG : GGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG : GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA : GGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG : CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG : GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGATGGTCTTATTTTTCAG : GGTTGGGATGATCCTTATGTTCCTCGTACGCATGAGGGTCTCTTGAAGTGGAAATACCCTGAAATGAACTCGGTCGACTTTCTCTTTGAG : GTGGTTGACGATCGTGAATTGCTTTATCTACATGAACGAGGGAAGAAGAAACTAATGGAGGGGAGTAGAGTTGTTTTCCCAGGTCAGAAATCCCCAGTTATATCAGTTGTATACTTGAGGTGTCATGAAGGAATGTTTCCCTTAATTGGGGTTTAGTTGGGAATATAAGAGACTAATATCATCCACAGTCCACACTCATTAATTTTATCTTTTTGGAACTGTGAACTCGTTAAGATTTTATTGCTGTCTTGTATACTTACTGAGCCGGGTGGATGTTTTTTCTTAATAAAATTTTATTGTGGGGGA</gDNA_template>
            <first_frame> V  D  L  *  L  G  F  L  S  I  R  T  *  H  *  *  E  A  C  C  H  M  C  F  T  L  F  K  A  L  S  K  *  R  L  T  L  S  H  L  R  *  M  L  Y  P  I  E  W  N  L  I  L  I  F  M  A  S  M  R  F  H  N  F  L  P  V  R  N  M  Q  R  S  I  F  L  F  I  A  H  M  G  I  I  A  L  G  L  *  S  F  I  I  L  C  A  R  C  Q  Y  L  S  V  R :   Q  L  K  F  F  L  T  L  V  L  L  G  S  I  S  Q  T  I  S  M  P  Y  M  P  S  I  M  R  K  N  L  K  W  L  F  V  H  Q  H  L  S  G  K  N  L  L  S  L  I  *  M  V  M  Q  C  Q  M  T  M  M  M  E  V  L  Q  L  L  *  L :   T  I  L  K  H  K  *  *  P  Q  M  M  T  F  W  E  M  Q  S  H  K  I  S  K  I  I  Y  D  S  S  V  I  K  H  *  K  *  P  Q  G :   V  E  A  H  N  F  L  A  H  I  Q  S  L  L  T   : G  K  T  C  S  Y  *  G  S  V  T  T  M  P  L  G  R  L  M  G  H  G  I  *  C  *  S  R  W  M  V  V  S  *  L  I  G  I  S  T  F  G  G  F  R  *  D  F  L  A  D  T  L  M  K :   V  *  P  K  R  P  T  T  S  L  Y  L  M  E  R  W  *  L  I  L  C  L  T  H  R  S  R  K  G  D  T  *  F  M  I  *  L  L  *  T  N  C  L  S  L  S :   D  P  F  M  N  G  G  E  *  S  T  K  K  *  L  V  Q  G  I  M  N  V  N  I  Y  T  R  V  E  T  L  I  I  D  M  S  W  S  L  S  G :   *  G  G  R  I  F  F  C  S  L  L  S  R  N  F  S  K  N  L  S  Q  S  F  H  M  K  L  M  V  L  F  F  R :   V  G  M  I  L  M  F  L  V  R  M  R  V  S  *  S  G  N  T  L  K  *  T  R  S  T  F  S  L  R :   W  L  T  I  V  N  C  F  I  Y  M  N  E  G  R  R  N  *  W  R  G  V  E  L  F  S  Q  V  R  N  P  Q  L  Y  Q  L  Y  T  *  G  V  M  K  E  C  F  P  *  L  G  F  S  W  E  Y  K  R  L  I  S  S  T  V  H  T  H  *  F  Y  L  F  G  T  V  N  S  L  R  F  Y  C  C  L  V  Y  L  L  S  R  V  D  V  F  S  *  *  N  F  I  V  G   </first_frame>
            <second_frame>  L  T  S  S  *  V  F  L  V  L  G  L  S  I  D  E  K  R  V  V  I  C  V  L  L  C  S  R  L  *  A  N  K  G  *  L  Y  H  I  F  A  E  C  Y  I  L  L  N  G  T  *  Y  *  Y  L  W  L  L  *  G  F  T  I  S  C  P  S  E  T  C  K  E  V  Y  S  C  S  L  H  T  W  A  *  S  H  W  V  Y  D  H  S  L  S  Y  A  H  A  A  N  I  C  Q  S   : G  N  *  N  F  F  *  R  S  S  S  W  D  L  *  A  R  L  Y  R  C  P  I  C  L  L  S  *  E  K  T  *  N  G  C  L  S  T  N  T  *  V  E  K  I  F  *  A  *  F  E  W  *  C  N  A  R  *  R  *  *  W  R  S  C  S  S  F  D   : *  Q  S  *  S  T  S  S  N  L  K  *  *  H  F  G  R  C  N  P  T  R  S  A  K  S  F  T  T  V  L  L  S  S  T  E  N  D  P  R   : G  *  R  P  T  I  S  W  L  T  S  S  L  S  *  Q  :  G  K  L  A  V  I  K  A  A  L  L  L  C  H  L  E  G  *  W  D  T  V  Y  D  A  D  H  D  G  W  L  F  L  N  *  *  A  F  Q  L  S  E  G  S  D  E  I  S  L  Q  T  H  *  *   : R  F  S  R  K  D  P  P  L  H  F  T  *  W  R  D  G  N  *  Y  F  A  *  H  T  E  A  G  K  E  I  P  N  L  *  Y  D  C  F  E  P  I  V  C  H  *   : A  T  L  L  *  T  V  E  N  D  R  Q  R  S  D  W  S  K  E  L  *  T  S  T  Y  I  P  E  *  K  P  L  L  *  I  *  V  G  A  F  Q   : G  E  E  E  G  F  F  S  A  L  Y  C  H  E  T  S  Q  R  I  Y  P  K  A  F  T  *  S  *  W  S  Y  F  S   : G  L  G  *  S  L  C  S  S  Y  A  *  G  S  L  E  V  E  I  P  *  N  E  L  G  R  L  S  L  *   : G  G  *  R  S  *  I  A  L  S  T  *  T  R  E  E  E  T  N  G  G  E  *  S  C  F  P  R  S  E  I  P  S  Y  I  S  C  I  L  E  V  S  *  R  N  V  S  L  N  W  G  L  V  G  N  I  R  D  *  Y  H  P  Q  S  T  L  I  N  F  I  F  L  E  L  *  T  R  *  D  F  I  A  V  L  Y  T  Y  *  A  G  W  M  F  F  L  N  K  I  L  L  W  G  </second_frame>
            <third_frame>   *  P  L  V  R  F  S  *  Y  *  D  L  A  L  M  R  S  V  L  S  Y  V  F  Y  S  V  Q  G  F  K  Q  I  K  A  N  F  I  T  S  S  L  N  V  I  S  Y  *  M  E  L  D  T  N  I  Y  G  F  Y  E  V  S  Q  F  L  A  R  Q  K  H  A  K  K  Y  I  L  V  H  C  T  H  G  H  N  R  T  G  F  M  I  I  H  Y  L  M  R  T  L  P  I  S  V  S  Q  :  A  I  K  I  F  S  D  A  R  P  P  G  I  Y  K  P  D  Y  I  D  A  L  Y  A  F  Y  H  E  K  K  P  E  M  V  V  C  P  P  T  P  E  W  K  K  S  S  E  L  D  L  N  G  D  A  M  P  D  D  D  D  D  G  G  P  A  A  P  L  T  :  D  N  L  E  A  Q  V  V  T  S  N  D  D  I  L  G  D  A  I  P  Q  D  Q  Q  N  H  L  R  Q  F  C  Y  Q  A  L  K  M  T  P  G  :  G  R  G  P  Q  F  P  G  S  H  P  V  S  L  D  R :   E  N  L  Q  L  L  R  Q  R  Y  Y  Y  A  T  W  K  A  D  G  T  R  Y  M  M  L  I  T  M  D  G  C  F  L  I  D  R  H  F  N  F  R  R  V  Q  M  R  F  P  C  R  H  T  N  E  :  G  L  A  E  K  T  H  H  F  T  L  L  D  G  E  M  V  I  D  T  L  P  D  T  Q  K  Q  E  R  R  Y  L  I  Y  D  M  I  A  L  N  Q  L  S  V  I  E  :  R  P  F  Y  E  R  W  R  M  I  D  K  E  V  I  G  P  R  N  Y  E  R  Q  H  I  Y  Q  S  R  N  P  Y  Y  R  Y  E  L  E  P  F  R  :  V  R  R  K  D  F  F  L  L  S  T  V  T  K  L  L  K  E  F  I  P  K  L  S  H  E  A  D  G  L  I  F  Q  :  G  W  D  D  P  Y  V  P  R  T  H  E  G  L  L  K  W  K  Y  P  E  M  N  S  V  D  F  L  F  E  :  V  V  D  D  R  E  L  L  Y  L  H  E  R  G  K  K  K  L  M  E  G  S  R  V  V  F  P  G  Q  K  S  P  V  I  S  V  V  Y  L  R  C  H  E  G  M  F  P  L  I  G  V  *  L  G  I  *  E  T  N  I  I  H  S  P  H  S  L  I  L  S  F  W  N  C  E  L  V  K  I  L  L  L  S  C  I  L  T  E  P  G  G  C  F  F  L  I  K  F  Y  C  G  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77862" stop="78029"/>
                    <exon start="78117" stop="78323"/>
                    <exon start="80880" stop="80999"/>
                    <exon start="81222" stop="81268"/>
                    <exon start="83052" stop="83214"/>
                    <exon start="83337" stop="83474"/>
                    <exon start="83606" stop="83728"/>
                    <exon start="83833" stop="83931"/>
                    <exon start="84297" stop="84386"/>
                    <exon start="84695" stop="84850"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1308</number_coding_nucleotides>
                  <number_encoded_amino_acids>436</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MELDTNIYGFYEVSQFLARQKHAKKYILVHCTHGHNRTGFMIIHYLMRTLPISVSQAIKIFSDARPPGIYKPDYIDALYAFYHEKKPEMVVCPPTPEWKKSSELDLNGDAMPDDDDDGGPAAPLTDNLEAQVVTSNDDILGDAIPQDQQNHLRQFCYQALKMTPGGRGPQFPGSHPVSLDRENLQLLRQRYYYATWKADGTRYMMLITMDGCFLIDRHFNFRRVQMRFPCRHTNEGLAEKTHHFTLLDGEMVIDTLPDTQKQERRYLIYDMIALNQLSVIERPFYERWRMIDKEVIGPRNYERQHIYQSRNPYYRYELEPFRVRRKDFFLLSTVTKLLKEFIPKLSHEADGLIFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFEVVDDRELLYLHERGKKKLMEGSRVVFPGQKSPVISVVYLRCHEGMFPLIGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="76349" e_stop="76866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="76349" e_stop="76866" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76349" stop="76866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76433" stop="76866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76444" stop="76865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76487" stop="76866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGATACTATTCATTGTCAGATTGGAGGAAACAAGGCATCAAGCACGTAAAGGTTGGTACATGGTAATAAAGTCATGGAGGAGAAAAGGTGATGAGGGCATATTTTTTCTCTCTGATTTATTGTTGTTGTCCTGATTTTTATTCTTTCACGTGTATCAGATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAATAAAAATAAAAA</gDNA_template>
            <first_frame> V  D  T  I  H  C  Q  I  G  G  N  K  A  S  S  T  *  R  L  V  H  G  N  K  V  M  E  E  K  R  *  *  G  H  I  F  S  L  *  F  I  V  V  V  L  I  F  I  L  S  R  V  S  D  S  M  Q  R  P  R  F  C  T  *  Q  *  V  C  K  F  I  C  L  *  G  N  F  I  Y  V  G  C  M  F  S  *  M  L  Y  L  R  I  S  L  H  Y  L  P  C  K  V  L  Q  V  C  L  R  T  F  I  H  T  W  L  D  L  R  C  Y  Y  Y  H  I  C  Y  T  W  C  N  Y  *  C  V  L  F  A  N  Q  V  E  N  *  V  D  D  *  F  V  C  N  L  L  G  I  K  R  R  S  Y  F  E  N  D  R  A  F  V  K  N  K  N  K   </first_frame>
            <second_frame>  S  I  L  F  I  V  R  L  E  E  T  R  H  Q  A  R  K  G  W  Y  M  V  I  K  S  W  R  R  K  G  D  E  G  I  F  F  L  S  D  L  L  L  L  S  *  F  L  F  F  H  V  Y  Q  I  Q  C  R  G  R  G  S  A  P  D  N  E  S  V  N  L  F  V  S  E  V  I  L  Y  M  L  V  A  C  L  V  E  C  C  T  *  E  *  A  C  I  T  Y  H  V  K  Y  Y  K  F  V  C  V  P  L  S  I  H  G  *  I  F  A  V  T  I  I  I  Y  V  T  L  G  A  I  I  N  V  C  C  L  P  I  K  W  K  T  K  L  M  T  N  L  F  V  I  F  *  E  *  K  G  E  A  I  L  R  M  I  G  P  L  S  K  I  K  I  K  </second_frame>
            <third_frame>   R  Y  Y  S  L  S  D  W  R  K  Q  G  I  K  H  V  K  V  G  T  W  *  *  S  H  G  G  E  K  V  M  R  A  Y  F  F  S  L  I  Y  C  C  C  P  D  F  Y  S  F  T  C  I  R  F  N  A  E  A  A  V  L  H  L  T  M  S  L  *  I  Y  L  S  L  R  *  F  Y  I  C  W  L  H  V  *  L  N  A  V  P  E  N  K  L  A  L  L  T  M  *  S  T  T  S  L  F  A  Y  L  Y  P  Y  M  V  R  S  S  L  L  L  L  S  Y  M  L  H  L  V  Q  L  L  M  C  V  V  C  Q  S  S  G  K  L  S  *  *  L  I  C  L  *  S  S  R  N  K  K  E  K  L  F  *  E  *  *  G  L  C  Q  K  *  K  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0103M07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="76509" e_stop="76571"/>
            <exon e_start="77898" e_stop="78029"/>
            <exon e_start="78117" e_stop="78323"/>
            <exon e_start="80880" e_stop="81063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.921"/>
          <exon-intron don_prob="0.991" acc_prob="0.379" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="76509" e_stop="76571" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76572" i_stop="77897" i_length="1326"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77898" e_stop="78029" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.379">
            <gDNA_intron_boundary i_start="78030" i_stop="78116" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78117" e_stop="78323" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78324" i_stop="80879" i_length="2556"/>
          </intron>
          <exon e_serial="4" e_score="0.929">
            <gDNA_exon_boundary e_start="80880" e_stop="81063" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76509" stop="76571"/>
              <exon start="77898" stop="78029"/>
              <exon start="78117" stop="78323"/>
              <exon start="80880" stop="81063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77922" stop="78029"/>
              <exon start="78117" stop="78303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAG : GTTTCACAATTTCTTGCCCGTCAGAAACATGCAAAGAAGTATATTCTTGTTCATTGCACACATGGGCATAATCGCACTGGGTTTATGATCATTCATTATCTTATGCGCACGCTGCCAATATCTGTCAGTCAG : GCAATTAAAATTTTTTCTGACGCTCGTCCTCCTGGGATCTATAAGCCAGACTATATCGATGCCCTATATGCCTTCTATCATGAGAAAAAACCTGAAATGGTTGTTTGTCCACCAACACCTGAGTGGAAAAAATCTTCTGAGCTTGATTTGAATGGTGATGCAATGCCAGATGACGATGATGATGGAGGTCCTGCAGCTCCTTTGACT : GACAATCTTGAAGCACAAGTAGTAACCTCAAATGATGACATTTTGGGAGATGCAATCCCACAAGATCAGCAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTT</gDNA_template>
            <first_frame> I  Q  C  R  G  R  G  S  A  P  D  N  E  S  V  N  L  F  V  S  E  :  V  S  Q  F  L  A  R  Q  K  H  A  K  K  Y  I  L  V  H  C  T  H  G  H  N  R  T  G  F  M  I  I  H  Y  L  M  R  T  L  P  I  S  V  S  Q  :  A  I  K  I  F  S  D  A  R  P  P  G  I  Y  K  P  D  Y  I  D  A  L  Y  A  F  Y  H  E  K  K  P  E  M  V  V  C  P  P  T  P  E  W  K  K  S  S  E  L  D  L  N  G  D  A  M  P  D  D  D  D  D  G  G  P  A  A  P  L  T  :  D  N  L  E  A  Q  V  V  T  S  N  D  D  I  L  G  D  A  I  P  Q  D  Q  Q  N  H  L  R  Q  F  C  Y  Q  A  L  K  M  T  P  G  V  G  I  L  Q  L  V  L  L  V  S  L  *  L  L  H  *  M  E  I  S  </first_frame>
            <second_frame>  F  N  A  E  A  A  V  L  H  L  T  M  S  L  *  I  Y  L  S  L  R :   F  H  N  F  L  P  V  R  N  M  Q  R  S  I  F  L  F  I  A  H  M  G  I  I  A  L  G  L  *  S  F  I  I  L  C  A  R  C  Q  Y  L  S  V  R :   Q  L  K  F  F  L  T  L  V  L  L  G  S  I  S  Q  T  I  S  M  P  Y  M  P  S  I  M  R  K  N  L  K  W  L  F  V  H  Q  H  L  S  G  K  N  L  L  S  L  I  *  M  V  M  Q  C  Q  M  T  M  M  M  E  V  L  Q  L  L  *  L :   T  I  L  K  H  K  *  *  P  Q  M  M  T  F  W  E  M  Q  S  H  K  I  S  K  I  I  Y  D  S  S  V  I  K  H  *  K  *  P  Q  G  *  E  F  C  S  W  F  C  W  C  L  Y  N  C  C  I  K  W  K  F  L </second_frame>
            <third_frame>   S  M  Q  R  P  R  F  C  T  *  Q  *  V  C  K  F  I  C  L  *   : G  F  T  I  S  C  P  S  E  T  C  K  E  V  Y  S  C  S  L  H  T  W  A  *  S  H  W  V  Y  D  H  S  L  S  Y  A  H  A  A  N  I  C  Q  S   : G  N  *  N  F  F  *  R  S  S  S  W  D  L  *  A  R  L  Y  R  C  P  I  C  L  L  S  *  E  K  T  *  N  G  C  L  S  T  N  T  *  V  E  K  I  F  *  A  *  F  E  W  *  C  N  A  R  *  R  *  *  W  R  S  C  S  S  F  D   : *  Q  S  *  S  T  S  S  N  L  K  *  *  H  F  G  R  C  N  P  T  R  S  A  K  S  F  T  T  V  L  L  S  S  T  E  N  D  P  R  G  R  N  F  A  V  G  S  V  G  V  F  I  I  V  A  L  N  G  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76509" stop="76571"/>
                    <exon start="77898" stop="78029"/>
                    <exon start="78117" stop="78323"/>
                    <exon start="80880" stop="81038"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQCRGRGSAPDNESVNLFVSEVSQFLARQKHAKKYILVHCTHGHNRTGFMIIHYLMRTLPISVSQAIKIFSDARPPGIYKPDYIDALYAFYHEKKPEMVVCPPTPEWKKSSELDLNGDAMPDDDDDGGPAAPLTDNLEAQVVTSNDDILGDAIPQDQQNHLRQFCYQALKMTPGVGILQLVLLVSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="76377" e_stop="76401"/>
            <exon e_start="76509" e_stop="77248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76377" e_stop="76401" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76402" i_stop="76508" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="76509" e_stop="77248" e_length="740"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76377" stop="76401"/>
              <exon start="76509" stop="77248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAACAAGGCATCAAGCACGTAAAG : ATTCAATGCAGAGGCCGCGGTTCTGCACCTGACAATGAGTCTGTAAATTTATTTGTCTCTGAGGTAATTTTATATATGTTGGTTGCATGTTTAGTTGAATGCTGTACCTGAGAATAAGCTTGCATTACTTACCATGTAAAGTACTACAAGTTTGTTTGCGTACCTTTATCCATACATGGTTAGATCTTCGCTGTTACTATTATCATATATGTTACACTTGGTGCAATTATTAATGTGTGTTGTTTGCCAATCAAGTGGAAAACTAAGTTGATGACTAATTTGTTTGTAATCTTCTAGGAATAAAAAGGAGAAGCTATTTTGAGAATGATAGGGCCTTTGTCAAAAATAAAAATAAAAATAAAAATGATAGGGTAGATATTTTGTAATTTTATGTTATATAATGAATGTGCTCTATTCTTATCGAAAGAAAGAATATAATCCATTCCTTCAAGTGGAGCCTTGGTGTAACGGTAAAAGCTGTCATTGTGTTATTAGATCGTCACATGTTCAAGCTGTGAAAATAGTTTTTTGTGGGAATGCAATATAATGTTGTGTACAGTAGATCGAATATGGTCTCCTTGTTGGGTTTTTGTTATCTTTTTAGGTGATATTTCCTCCTATATTGTGACTATGCATCTACTTGATGCCTTTGTGATTTATAGAACACTTCATCAAAAAGATATGGTCCCCTCTCTGGACCTGGACAGTGGAAACTTAATGCACTAGGGCTCTACACTCTT</gDNA_template>
            <first_frame> E  T  R  H  Q  A  R  K   : D  S  M  Q  R  P  R  F  C  T  *  Q  *  V  C  K  F  I  C  L  *  G  N  F  I  Y  V  G  C  M  F  S  *  M  L  Y  L  R  I  S  L  H  Y  L  P  C  K  V  L  Q  V  C  L  R  T  F  I  H  T  W  L  D  L  R  C  Y  Y  Y  H  I  C  Y  T  W  C  N  Y  *  C  V  L  F  A  N  Q  V  E  N  *  V  D  D  *  F  V  C  N  L  L  G  I  K  R  R  S  Y  F  E  N  D  R  A  F  V  K  N  K  N  K  N  K  N  D  R  V  D  I  L  *  F  Y  V  I  *  *  M  C  S  I  L  I  E  R  K  N  I  I  H  S  F  K  W  S  L  G  V  T  V  K  A  V  I  V  L  L  D  R  H  M  F  K  L  *  K  *  F  F  V  G  M  Q  Y  N  V  V  Y  S  R  S  N  M  V  S  L  L  G  F  C  Y  L  F  R  *  Y  F  L  L  Y  C  D  Y  A  S  T  *  C  L  C  D  L  *  N  T  S  S  K  R  Y  G  P  L  S  G  P  G  Q  W  K  L  N  A  L  G  L  Y  T  L </first_frame>
            <second_frame>  K  Q  G  I  K  H  V  K  :  I  Q  C  R  G  R  G  S  A  P  D  N  E  S  V  N  L  F  V  S  E  V  I  L  Y  M  L  V  A  C  L  V  E  C  C  T  *  E  *  A  C  I  T  Y  H  V  K  Y  Y  K  F  V  C  V  P  L  S  I  H  G  *  I  F  A  V  T  I  I  I  Y  V  T  L  G  A  I  I  N  V  C  C  L  P  I  K  W  K  T  K  L  M  T  N  L  F  V  I  F  *  E  *  K  G  E  A  I  L  R  M  I  G  P  L  S  K  I  K  I  K  I  K  M  I  G  *  I  F  C  N  F  M  L  Y  N  E  C  A  L  F  L  S  K  E  R  I  *  S  I  P  S  S  G  A  L  V  *  R  *  K  L  S  L  C  Y  *  I  V  T  C  S  S  C  E  N  S  F  L  W  E  C  N  I  M  L  C  T  V  D  R  I  W  S  P  C  W  V  F  V  I  F  L  G  D  I  S  S  Y  I  V  T  M  H  L  L  D  A  F  V  I  Y  R  T  L  H  Q  K  D  M  V  P  S  L  D  L  D  S  G  N  L  M  H  *  G  S  T  L   </second_frame>
            <third_frame>   N  K  A  S  S  T  *  R :   F  N  A  E  A  A  V  L  H  L  T  M  S  L  *  I  Y  L  S  L  R  *  F  Y  I  C  W  L  H  V  *  L  N  A  V  P  E  N  K  L  A  L  L  T  M  *  S  T  T  S  L  F  A  Y  L  Y  P  Y  M  V  R  S  S  L  L  L  L  S  Y  M  L  H  L  V  Q  L  L  M  C  V  V  C  Q  S  S  G  K  L  S  *  *  L  I  C  L  *  S  S  R  N  K  K  E  K  L  F  *  E  *  *  G  L  C  Q  K  *  K  *  K  *  K  *  *  G  R  Y  F  V  I  L  C  Y  I  M  N  V  L  Y  S  Y  R  K  K  E  Y  N  P  F  L  Q  V  E  P  W  C  N  G  K  S  C  H  C  V  I  R  S  S  H  V  Q  A  V  K  I  V  F  C  G  N  A  I  *  C  C  V  Q  *  I  E  Y  G  L  L  V  G  F  L  L  S  F  *  V  I  F  P  P  I  L  *  L  C  I  Y  L  M  P  L  *  F  I  E  H  F  I  K  K  I  W  S  P  L  W  T  W  T  V  E  T  *  C  T  R  A  L  H  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77004" stop="77234"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVTCSSCENSFLWECNIMLCTVDRIWSPCWVFVIFLGDISSYIVTMHLLDAFVIYRTLHQKDMVPSLDLDSGNLMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 232 chains have been computed
$ 
$ memory statistics:
$ 180360 bytes spliced alignments in total
$ 81 spliced alignments have been stored
$ 2226 bytes was the average size of a spliced alignment
$ 23248 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1660 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 274 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 12:59:55
-->
