<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:01:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1816" ref_strand="+" ref_description="SGN-M1816 T1177 [cos_markers]">
      <seq>caaaatcatttacgacagttctgttatcaagcactgaaaatgaccccagggggtagaggcccacaatttcctggctcacatccagtctctcttgacagggaaaacttgcagttattaaggcagcgttactactatgccacttggaaggctgatgggacacggtatatgatgctgatcacgatggatggttgtttcttaattgataggcatttcaactttcggagggttcagatgagatttccttgcagacacactaatgaaggtttagccgaaaagacccaccacttcaccttacttgatggagagatggtaattgatactttgcctgacacacagaagcacgaaaggagatacctaatttatgatatgattgctttgaaccaattgtctgtcattgagcgacccttttatgaacggtggagaatgatcgacaaagaagtgattggtccaaggaattatgaacgtcaacatatataccagagtagaaacccttattatagatatgagttggagcctttcagggtgaggaggaaggatttttttctgctctctactgtcacgaaacttctcaaagaatgtatcccaaagctttcacatgaagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0103M07-ki8Kl/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09SLe0103M07.1" temp_strand="+" temp_description="C09SLe0103M07.1  EF647597.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0103M07 upload_account_name:spain">
        <position start="80649" stop="84216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80949" g_stop="80999" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222">
            <donor d_prob="0.091" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81222" g_stop="81268" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="98" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83052" g_stop="83214" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="261" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83337" g_stop="83474" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="399" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83606" g_stop="83728" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="522" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83833" g_stop="83916" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="606" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0103M07.1" gen_strand="+" ref_id="SGN-M1816" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0103M07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80949" e_stop="80999"/>
          <exon e_start="81222" e_stop="81268"/>
          <exon e_start="83052" e_stop="83214"/>
          <exon e_start="83337" e_stop="83474"/>
          <exon e_start="83606" e_stop="83728"/>
          <exon e_start="83833" e_stop="83916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGGGTAGGAATTTTGCAGTTGGTTCTGTTGGTGTCTTTATAATTGTTGCATTAAATGGAAATTTCTTGTATTGTTTATGTCCGTTACTTTTTTTTTTCTGACCTTGCTGTGGACTCACTTTCTATTGTGCAGTTGTGGATTATGTAGACTACTTACTGCAAAATATAGATGTGTGTGCTGTTTCAATTCTAACTCATAATACCTTTTGGTGTATTTGCCTTTCAGGGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAGGTTTGGTTCCTGTCCTTATTCGGGGAACTTTAACTTCATTATATATTTTTTTTTTGGTCTAGTCAGGCGTAACCTTAGGTCTAGCTTATCATGCTTAACCATGCATACAAGAGGCCCCTTTTCACCTAAATTAACTTTAAAAGCAAGAAACATGTTGATTTTTCCCCAAATCAACATGTTTCCTCGACACCACTGAGTTGGATTAATTAAAATGTTGATTTGGAAAAAAAATTAATCTTGTTTGACTTGTTTAAATTGTGTTACTTATTTATTAAAATGCTAATTTATATATCAAATACAACAAACAACAAAATAGTCCACTACCATGTATCAATAAATTATCAATAATATGCTTAAAGGATAAATTGAAGCTTGTTAGTGAATATGGGTCCTGTCACTCCTGACTCCAGTGATCTTTGTTCTTAGAGATGGTGGCGTTTGTTTTACTGCAAAGTTTGTTACAGTGGCATGTAACATGCTAAATCACTTTTGAAAATATTATCATGATTATTTCTTTATCCTCTTCATGTGTCTAGTTCCTGCTTTCTTCAGTTTAAGCTTAAAGGTGTTGAATGTGATTAACAAATAACAGCCTACTTGGTATAGAATAAAATTTGGTGGCTTCTTCAGTTTAAGCTTAAAGGTGCTTCTTTCGATAGTTTCTTTTTCTTGCTATGAGACAAATAGTTGAGTGCTGTTCAGTTTCAATTAATAAATAAATAAAAATCCAGTTTTGGAAAATAGTTGAGTGTTGTTTCATCACTTATTAAGTGCCTAAATTGGCTATTATAGTTGGATTTTGGCTGGTTTATCTGAGTGATTTTAGCTTATGATATAAAATGGACTGTGCCATCTCGTAGGATTTTTGCCGATCATGTATGTATTTCTGTTGTTCTAGTTGCAGTTGGATTCATCATGTTTTTCATAGACTTTTGGATGACAGGTTCAGTGCTAACTATACTTTTTCATAGGGAGATGTAGTCTTCTTCATGCTTGAGCTCTTACAATATTATTTGGTGCTAAGGATGAAATACCTTATTTGTTTTGTTTTGTTTGTTCTTCTAATATTGTTTTACTTTGCACGATGACTTGTCCATCAAGTTTTCTGAGTAGTTGATGCAGTGTTTTAAAAAACGTTTTTGGAGCGAGTCCCTGGGCGAGTCTCGGGGTGGGGTGTACCAAAAATGCTCTAGAGCGTAAATTATAAACGTAGGCGTCGCCCTGAACATAAAAACGTAAAGTTCTGGGCGTAAAAATGTACACCCGGGCGTTTTTATTTTTTTTTAAATATTTTTTGCTTTAAATCATATTTTTATTATTGGTTTAATGATATTTCTCAAATAATAATTATAATACTTTTTTCTTCATTATTAATTATTAATACTTATCGCAAATAAAAATCATAAATTATTATTTGCGTATTTTATTAGTAATAAAACTATAAATTTGAATATACATGAGACTACTGTCTCGAGGCTTATGCCTCGCCCACACCGTATAAAACGCCTCGCCTCACGCCCCCCTGCCTTTTAAAGCACTGAGTTAATGTATTCTTTTAGATATCTTCTACAAATTTAACTCATGGATAACCTTATTGTATTGTCATACTTGAACCTCATGTGGACTCCGACATGGATATTAATATATTCTCTAACAAAACAATTGTTTATTTATTAAACTGGCTAGTTGCCCTACAAACTATGGTAGGATCCCGGACAAAACATGGAAGGTGAAAACCCATAAATTAAAATTCACCCAAGGTAATTGTTATCGTGTTGCGCAGGGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAAGTATTCTAATATCCAGTTTGCTATTAGGATGTTCTGATCTTTTCTTTTCCCTTTTATGTCTCACTGTTGGAAATTATCTGTACATATGATTTATCATATGAAATTTTCATATCTTCTCCCAGGGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAGGTTGGATTCTTCGATATGAAACCACTTCCCTTTTCTTCTTGAAAAAATTATGTTAATCTATACGCTTGGGGGTCTCTCTTCGTATATTATCTGTACATTGTTATTGCTCATTCTCTGTTCTATAATTTCAGCGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGGGTATGTTTCGTCAAAGTGGAATATATTATCATAAGATTATTTATAGTTATTTTCTAGTATTATTTGTTCTACGAAAGTGCTGCTGATCTCTCAATGTTTATCAGGTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGAT</genome_strand>
        <mrna_strand>CAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG..............................................................................................................................................................................................................................GGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA..........................................................................................................................GGTTTAGCCGAAAAGACCCACCACTTCACCTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCACGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG...................................................................................................................................CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG........................................................................................................GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATGTATCCCAAAGCTTTCACATGAAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="80949" PGL_stop="83916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80949" e_stop="80999"/>
            <exon e_start="81222" e_stop="81268"/>
            <exon e_start="83052" e_stop="83214"/>
            <exon e_start="83337" e_stop="83474"/>
            <exon e_start="83606" e_stop="83728"/>
            <exon e_start="83833" e_stop="83916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.091" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.622" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.998" e_score="0.986"/>
          <exon-intron don_prob="0.834" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80949" e_stop="80999" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.091" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81000" i_stop="81221" i_length="222"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81222" e_stop="81268" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.952">
            <gDNA_intron_boundary i_start="81269" i_stop="83051" i_length="1783"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83052" e_stop="83214" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.622" acc_prob="0.996">
            <gDNA_intron_boundary i_start="83215" i_stop="83336" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="83337" e_stop="83474" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.790" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83475" i_stop="83605" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83606" e_stop="83728" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.834" acc_prob="0.972">
            <gDNA_intron_boundary i_start="83729" i_stop="83832" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="83833" e_stop="83916" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80949" stop="80999"/>
              <exon start="81222" stop="81268"/>
              <exon start="83052" stop="83214"/>
              <exon start="83337" stop="83474"/>
              <exon start="83606" stop="83728"/>
              <exon start="83833" stop="83916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATCATTTACGACAGTTCTGTTATCAAGCACTGAAAATGACCCCAGGG : GGTAGAGGCCCACAATTTCCTGGCTCACATCCAGTCTCTCTTGACAG : GGAAAACTTGCAGTTATTAAGGCAGCGTTACTACTATGCCACTTGGAAGGCTGATGGGACACGGTATATGATGCTGATCACGATGGATGGTTGTTTCTTAATTGATAGGCATTTCAACTTTCGGAGGGTTCAGATGAGATTTCCTTGCAGACACACTAATGAA : GGTTTAGCCGAAAAGACCCACCACTTCACTTTACTTGATGGAGAGATGGTAATTGATACTTTGCCTGACACACAGAAGCAGGAAAGGAGATACCTAATTTATGATATGATTGCTTTGAACCAATTGTCTGTCATTGAG : CGACCCTTTTATGAACGGTGGAGAATGATCGACAAAGAAGTGATTGGTCCAAGGAATTATGAACGTCAACATATATACCAGAGTAGAAACCCTTATTATAGATATGAGTTGGAGCCTTTCAGG : GTGAGGAGGAAGGATTTTTTTCTGCTCTCTACTGTCACGAAACTTCTCAAAGAATTTATCCCAAAGCTTTCACATGAAGCTGAT</gDNA_template>
            <first_frame> Q  N  H  L  R  Q  F  C  Y  Q  A  L  K  M  T  P  G  :  G  R  G  P  Q  F  P  G  S  H  P  V  S  L  D  R :   E  N  L  Q  L  L  R  Q  R  Y  Y  Y  A  T  W  K  A  D  G  T  R  Y  M  M  L  I  T  M  D  G  C  F  L  I  D  R  H  F  N  F  R  R  V  Q  M  R  F  P  C  R  H  T  N  E  :  G  L  A  E  K  T  H  H  F  T  L  L  D  G  E  M  V  I  D  T  L  P  D  T  Q  K  Q  E  R  R  Y  L  I  Y  D  M  I  A  L  N  Q  L  S  V  I  E  :  R  P  F  Y  E  R  W  R  M  I  D  K  E  V  I  G  P  R  N  Y  E  R  Q  H  I  Y  Q  S  R  N  P  Y  Y  R  Y  E  L  E  P  F  R  :  V  R  R  K  D  F  F  L  L  S  T  V  T  K  L  L  K  E  F  I  P  K  L  S  H  E  A  D </first_frame>
            <second_frame>  K  I  I  Y  D  S  S  V  I  K  H  *  K  *  P  Q  G :   V  E  A  H  N  F  L  A  H  I  Q  S  L  L  T   : G  K  T  C  S  Y  *  G  S  V  T  T  M  P  L  G  R  L  M  G  H  G  I  *  C  *  S  R  W  M  V  V  S  *  L  I  G  I  S  T  F  G  G  F  R  *  D  F  L  A  D  T  L  M  K :   V  *  P  K  R  P  T  T  S  L  Y  L  M  E  R  W  *  L  I  L  C  L  T  H  R  S  R  K  G  D  T  *  F  M  I  *  L  L  *  T  N  C  L  S  L  S :   D  P  F  M  N  G  G  E  *  S  T  K  K  *  L  V  Q  G  I  M  N  V  N  I  Y  T  R  V  E  T  L  I  I  D  M  S  W  S  L  S  G :   *  G  G  R  I  F  F  C  S  L  L  S  R  N  F  S  K  N  L  S  Q  S  F  H  M  K  L   </second_frame>
            <third_frame>   K  S  F  T  T  V  L  L  S  S  T  E  N  D  P  R   : G  *  R  P  T  I  S  W  L  T  S  S  L  S  *  Q  :  G  K  L  A  V  I  K  A  A  L  L  L  C  H  L  E  G  *  W  D  T  V  Y  D  A  D  H  D  G  W  L  F  L  N  *  *  A  F  Q  L  S  E  G  S  D  E  I  S  L  Q  T  H  *  *   : R  F  S  R  K  D  P  P  L  H  F  T  *  W  R  D  G  N  *  Y  F  A  *  H  T  E  A  G  K  E  I  P  N  L  *  Y  D  C  F  E  P  I  V  C  H  *   : A  T  L  L  *  T  V  E  N  D  R  Q  R  S  D  W  S  K  E  L  *  T  S  T  Y  I  P  E  *  K  P  L  L  *  I  *  V  G  A  F  Q   : G  E  E  E  G  F  F  S  A  L  Y  C  H  E  T  S  Q  R  I  Y  P  K  A  F  T  *  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0103M07.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80949" stop="80999"/>
                    <exon start="81222" stop="81268"/>
                    <exon start="83052" stop="83214"/>
                    <exon start="83337" stop="83474"/>
                    <exon start="83606" stop="83728"/>
                    <exon start="83833" stop="83916"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNHLRQFCYQALKMTPGGRGPQFPGSHPVSLDRENLQLLRQRYYYATWKADGTRYMMLITMDGCFLIDRHFNFRRVQMRFPCRHTNEGLAEKTHHFTLLDGEMVIDTLPDTQKQERRYLIYDMIALNQLSVIERPFYERWRMIDKEVIGPRNYERQHIYQSRNPYYRYELEPFRVRRKDFFLLSTVTKLLKEFIPKLSHEAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 6 chains have been computed
$ 
$ memory statistics:
$ 2280 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5688 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5688 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 6 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:01:25
-->
