<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 12:49:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745733" ref_strand="+" ref_description="SGN-E745733 [GI|47105137]">
      <seq>ggcttgccttccctttaagcagggagggactgagaattttctgaatgcatactcacgccgccatatccttcaaaccttcatccagtggcttgttctctctcaatccaggaatcttccaaaaccctagttttgtaattcgcccactcagaaacaagcttcgttattccattcttaattgcagaggcgttgaaattccatttcctaaactccgcccaagcattaattctgtcaacaatggctccacaagtatcgccgctgctgtcaaagatgttgatattgctacgcttgggaatctctgtgtcgatattgttctcaatgtaccggagttacctcctaagcctttagagcaacgaaaggcttatctggaacagttgtccaaatccccgcctgatacgcggtactgggaggcaggtggaaactgcaatgtggctatagcagcagcaaggcttggcctacgttgcatctctgttggtcatgtaggtgatgagatctatggacggttcctcattgacgtgcttagtgatgaaggtattagtatagttgggatgaatgagcggagtgaagcacttaatctttcaagttctgaaaatggaacactactgtgctgggtgttagtggacccttcgcagagacatggcttttgcagtcgtgcagattttagtgcagatcctgctttcagttggatgaccagactatctactgaagtaaagatggctattagaaaatcaaagatcctcttttgcaatggttatgactttgatgaactctcccctagccttcttgaatctgctcttgagtgtgctgtggaatctgggacatctatcttttttgaccctggaccacgaggtaggagtcttatcgcaggaagacctgaagaacaaagaacaattggaaagttgttgacgatgagtgaagtgcttctactgacttctgaggaggctgcatctttaactggtatcaaagatccaattttagcgggccaggatttgctcaataacggagtttgtactaagtgggtgattgttaagatgggtccgaagggttcaattttaatcactaagtcgagcataacgtgtgcacctgctttcaaggtcaatataatagacactgtgggctgtggagatagttttgtggctgctgttgcatttggattcatacatgacttgcccttgagttatacattaacccttgcaaatgcagtgggtgctgcaactgctacggggtgtggtgctggtagaaatgttgccagtttggggaaggtccaggaactattgaaggaatcaaatttaaacgaggatgagaagttttgggatgaagtactgaatgataatgtgaactcccgagatgtaactttactgtcaaaaatggttgtaaatggtaatagtcaggtaaaccgtgtctccctacaaaaggtggtatccgaagtgctgcccaagcttgaatttgcgccaaagatgactggctccttcaaatagacgatgcagtttttctgggacaaataaattttgttgttgttaccatcattctgattgattgttgcatattcaccccttaaaaagaaatgcatgagttgcaggtgctctagcttgcggattatgaagtgcacagttgtattagggctgctaccttgctggtggtcgaaccgacagttttgttgatagagtaagaggtgtccagatactattcatgatctgcttgcatgcatgcgagagggattggcagatagattgagcgttagtgtttgagagaaattgcatgatcaagttgcttgtgattcctgattttttctacgtgcacacatgagaagctgtgccttgcttcttgtaatttgattcttacatctaacatacagaagaaaacatgggcaatctgttttacaatggaagccatatagccatacatttctagtttaggatgagtagaagacaccaattcatgtttgcaacacgtccatattaccatttatgatacaaatacttgggcactcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="+" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="9284" stop="16539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9584" g_stop="9978" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9979" i_stop="11565" i_length="1587">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11566" g_stop="11816" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="646" r_length="251" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11817" i_stop="11972" i_length="156">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11973" g_stop="12264" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="938" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12265" i_stop="14532" i_length="2268">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14533" g_stop="14685" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="939" r_stop="1091" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14686" i_stop="15342" i_length="657">
            <donor d_prob="0.340" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15343" g_stop="16238" g_length="896"/>
          <reference_exon_boundary r_type="cDNA" r_start="1092" r_stop="1987" r_length="896" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1988" polyA_stop="2002"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="+" ref_id="SGN-E745733" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1987</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9584" e_stop="9978"/>
          <exon e_start="11566" e_stop="11816"/>
          <exon e_start="11973" e_stop="12264"/>
          <exon e_start="14533" e_stop="14685"/>
          <exon e_start="15343" e_stop="16238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGCCTTCCCTTTAAGCAGGGAGGGACTGAGAATTTTCTGAATGCATACTCACGCCGCCATATCCTTCAAACCTTCATCCAGTGGCTTGTTCTCTCTCAATCCAGGAATCTTCCAAAACCCTAGTTTTGTAATTCGCCCACTCAGAAACAAGCTTCGTTATTCCATTCTTAATTGCAGAGGCGTTGAAATTCCATTTCCTAAACTCCGCCCAAGCATTAATTCTGTCAACAATGGCTCCACAAGTATCGCCGCTGCTGTCAAAGATGTTGATATTGCTACGCTTGGGAATCTCTGTGTCGATATTGTTCTCAATGTACCGGAGTTACCTCCTAAGCCTTTAGAACAACGAAAGGCTTATCTGGAACAGTTGTCCAAATCCCCGCCTGATACGGTTCGTCTGTTTTTATTGAACTACAGATTGATTATAGAATATTTTGTTTTTTCTTGTTACCGTTATTTGTTGGTTTCTGTTTATACAGAATATAGTTTTCTGGTTTTTGCAAATTTATTGGATGCTAGTGCAGAAACCAAGTGTTCCTTTGGTTTCATTTATACGCAGTTAATACAGTGTACAATTAAGCTATTTGTAGTCCTAATTACCCCAAAAGCTCAAAAAATACTTGGCTACGAATGGTTGATGTTAATGTGAGTTGTACATATTATAGTAGTGATAGTTGAAGAAAATACTGAAGTAATAGTTGAAAATTTTAATTTGATAGATAAAATATACATAAAAGTTTTAGATGGATTTATGTTAGAAATGTTGATATCTTGGATGTCTTGAAAGAAAAAGAGTGTAATAGTAGAAAGTCCTTAAAACCCTAGAGAAAAAAACAAGAAAAGAAAAATGAATTGGGATGGAAGGAGTACTGTGACAACTCAATGAAGTTCTGAAGCACAAATGATTCTACATAAGGCCATCTACCGAACACATTTGACCATATAGATTTTGGAGAGTTGAATAAGTAGTCAGTCTTTTTTGATGGTTATTTTTGTACTTTGTGAATGCATAATTATTTTATCTTTTCTGATAATCGTGGTGTCCGGTCTGCACACTTCAATTAACTCCACGGGATACTTGTCACCTCCTACTAGCAATAGGTACCAAGTTACTCTGTTCACCAAGGCTAGAACAGATAGGAAGAAATCACCTAGTGTTTTGTCATTGTAGATACATAATTTTTCGTCTAGAAAACTATATATTTTGTAACCAGACTGCATTCACAACCAATTATTTTATCAACAATGACACTATTAAGTCGTGAAATACTAGTTATTAGAGCATCAAATGCATCTATAGAAGATTTGGCTCAAATATGGTTGAGCTCATTTGCATGTTAAATGAATGATGTAGTTGATTAAGTTTCTCCACCACATTTTGCTCCCAATTCTTGGTGGTCAATGAAGTGGGAACTGGGAAGGTAACCATTAATTCTCAAGTTCAAAATCAACTTGTGTTCAAATTCCGGCGAAGGCAAAAATAGCCATTAGGTGATTCCTTCACATCGGTGGAAAGAGTTATTTGGTATCTATGTTGGTGGGAAAAACCACATACTCAATCGTATAGTTCAGGTGTGCACAAGCCGACTTGTCAGCAATCATCATAAAATAAAAGTCTATTTTTACCACATTTTGGGTTCAAGCCCACTATTTTAACAAAGTAAAATATGTGGTTTAATGCTTGGATGCTATCATCTTTGGAAGATGTTATCTTCAGTTGCAATAGCAGAATTTTGGAAATGTAATGGGGTAATAGTGTATTCCCAGCTCTCCAGCTCTTGACTTCTACGCCTACATATGTTTTCTAGACAGCTTCAGTTAAGTTGGAATATAGAAATATTGAAGTATTATCTACATACCAGTTCAGTGATGCTGAAAATGTGTGGTATTAGCACCCCTGTTGCATCATCCTTTTATATTATTTCCTTATGGTTGTATGTATGTTAAGTGATATCTTGATTATTTGACCCTGTTTCAGCGGTACTGGGAGGCAGGTGGAAACTGCAATGTGGCTATAGCAGCAGCAAGGCTTGGCCTACGTTGCATCTCTGTTGGTCATGTAGGTGATGAGATCTATGGACGGTTCCTCATTGATGTGCTTAGTGATGAAGGTATTAGTATAGTTGGGATGAATGAGCGGAGTGAAGCACTTAATCTTTCAAGTTCTGAAAATGGAACACTACTGTGCTGGGTGTTAGTGGACCCTTCGCAGAGACATGGCTTTTGCAGGTCCTTTTGATCTTTCCCTCTCACTTGGTGCATAATTTCTTGATCATTGTTTGGCCCACTTTATGTTGCACGTAGAAAGTTATCATTGTCTTTCTTTTATAAGATAAGGTATAAAAAGGATCATAGTCTAACCTTTAAGACGTTAATGTTTTCCAGTCGTGCAGATTTTAGTGCAGATCCTGCTTTCAGTTGGATGACCAGACTATCTACTGAAGTAAAGATGGCTATTAGAAAATCAAAGATCCTCTTTTGCAATGGTTATGACTTTGATGAACTCTCCCCTAGCCTTCTTGAATCTGCTCTTGAGTGTGCTGTGGAATCTGGGACATCTATCTTTTTTGACCCTGGACCACGAGGTAGGAGTCTTATCGCAGGAAGACCTGAAGAACAAAGAACAATTGGAAAGTTGTTGACGATGAGTGAAGTGCTTCTACTGACTTCTGAGGAGGTTTGTGTTTCATACTTGCAAAAATTTGTCTCACTTGTGCCTTCTGCTATTTAACATCTCAATGTGTGGCAAAAAATGATAATAACCCAATTTTGTGAAGATAAAAAATATAATAGTTTCCCTGTGTGCACTTTAATGTTTAAATAATCCATTTAAAAGAGCTCTTCTGGTAGCTAAAAAGTATCTCACTGAACATGTGATATTGGAATCTGGTAGCTAAAGAGTTCTGTTATACGCTTGTAGCTAAAGAGTTCTGTTATATACTGGAATCTGGAAATACTGGTTGTAGTTTTGGTTTATTGACAAAATATGTGCAACTTAGAGGCAGCTGGAATTTATGGTATAAATAAGTCATTTTAAGAAAGTTATACTTGCTCCAGGCTATGGAGTTTTTTGTATTTGAAGCTTTCTATAACTCTTTTGCGTCATATCCTTTTTTTTTTCTTTTAACAATTTATCTGATTCCATTTTTGATATTTTTGAAAATTTGGAGTGTTAGTTTTTTATCCAAGGGTGAACATTTGACAGTAAGAATGCTATGTTTAAAGCTAGTTTTAATGCATTTAGACCTAAATCATGGACTTCTTTACTTTTTATCATTGCTTTGTTGGAGATATAAATGGAGTAACAAAGACAAAAGAGGCATGCATCTTAGAGGGATTCTAATTGGTTAGGGAGGAAAAATTGGTACACAGTGATATATATATATATATATATATATATATATATATATATATATATATATATATGGTAATTGACCTTTTGTATTAAACACCAAGTGAACTATTTACAAGATCCATAACTAGGCTAAAAGCAGCCTGTTATCTTAAGCAAAAACCAACCTAGCACAGAGCTATAATCTAGAATCTAAATCCATGTACAGCAGCTTGAATACTAGGAGATGCTCTAAAATTATGTACTTTTGCAATCTCTCTTGCTATTCTCTCCCAGCTTCTACTTTACTTCTCAACAACTCTTTAAGTTCCTTTCTATCCATAACCATGTACAAATTTAGCATAAACCAGTTTAAAAATTTATGCAGCTTGTGTCTTGCCTTTATCTCTGGTAATGATATTGTGAATGTGTTGGTCCCATTCAGTAGCAGCATGGTCTTGTCTCTGAATCAACACCATCAGGCCTGTTCCAGAATTGTGCAGATTCACATTGTCTGGAGAGATGATCAAATATTTCATCTTTGATTCTGGCACAGATGCACTGTACTCATTTAGTATCTACCATTAAGCCCTATCCTGTAAGTCTATCTGTGGTTAAGAGCTTCTTTTGCACCTAGAGCAACACTGTGAATCTAGCATTAGGCCTGGTATCATTTCTCAACATGAGTCATTTCCATGTCACTCTGGATTGGTCACCTAATAGCATCTTATAAAATATGCCTATAATACCTTTTCCAGCCTTGAGTGATCCCTGCACCTGCTCCATACGGACTCTAGCTTCAAATATTTTCCTTATCATCCTGCTAGCTTGCTATGGCACAACAACATTTGCAAATATTCATGGTGATTTTGCCACTTTTCCATGTCAAATATTCAGTCACGTGGAGCATTGTTTTTTTGTAAGAAATAAAAAGGTTAAGGTGCTAACTGTGAAAAATTAAAGGATACTTATGATAGGGGTGTGTAACACACAAAATTGGGGGTGCAAATGCAGAACTGGTTTTTGGCATTCTCTTTCATGCTGTTACAACATATAAATGGAAAATAATATAAACATTTGAAAAATATAAAAAATTAATATCTGGGAAATTGATTGTTTTTGTGTGTTTGATCATTTTCGTAGGAAGTCCATAAAAGGATTGTTTAGTTGCTTGTTAGAGCAATGCATGTAGTATTAGTATAAATACCGAGTGCGGATAAATTTTTGTTGTAGCAATGTACCCATCTTTGTGAAATTCTAGATCCCCTACTGTACTATTTCCTTGTAGTACCACTACCCCTTTCCATTTTCATGTACATTTTTAGGTTAATAAGGTTAAGCAATGGATGTAGCGTTATCCCTATTATGGTCTGCTGTAGTTGTAAAGTTGACCTCTTGATGCGATATTCGAGCTGATTTGTTGGCTTTTCCCTTGTTGCTATATCATAATGTAGCATAGTGGTTATCTTTTGCTGAATTTTTACTGTGTAAATTATGATGTTCCCCTTTCTTGTAAATCAGTGGACAGTTTTACTGCAGTGATAGCTTTTAGTGTATTGAGAATGTGTTCCCTCCCCGGAAACTTACTTATCTGAATCACTTTGTCTTCTCCAGGCTGCATCTTTAACTGGTATCAAAGATCCAATTTTAGCGGGCCAGGATTTGCTCAATAACGGAGTTTGTACTAAGTGGGTGATTGTTAAGATGGGTCCGAAGGGTTCAATTTTAATCACTAAGTCGAGCATAACGTGTGCACCTGCTTTCAAGGTATCAACTCTGTAGCTGGCTGGAATATTGGTTCTTGTAGAAAAGAAGTAGTCAATTCATCTAATTAACAGAAGTTTACTTGCTTTATCCCCATTAGTTATCTTACAACAACATACCCAATGTAATCCCTGGGGTTCGGGGAAGGTGATGTGTACGCCAACCTTATCCCTACTAGGTAGAGAGGTTATTTCTGATAAACCTTTGGGTCACCATTAGTTAGCTTATCCCAAAGAAATTTATGTTCTAGTTGGGCTCTCTTTCTTCATAAAACCCCAATTGAAGGGCGGGCAGATGATCAATGAGCACGCAACATTTCGGGATATTTAAGAAAATTGAAGCAAAGTTAATATATCTCATGATTTCTAAAAGAATCACCAACTTCCATTCCCAGCAAATGTAGGAACCTTAATGTTCCCTAATATTTTTTCTTTTTAATAACTGAGAAATCTACTAGGCTAGTCACGGTTGGAAACTCGATTGATAATAGGCCCACCCCTTTGTCCGTCTCCACTTATGTATCAGGTTTTTGTTTGAGGCTGGGTTGGAACCTGTGATGCAGGTCTAACCTACACATCATGTGTTGCGCTCTTTCCACTAAAACAAAGTGCATCTTTCATAAATTTGATTTTAAATGTCCTCTCTGATTCATTGTAACAGGTCAATATAATAGACACTGTGGGCTGTGGAGATAGTTTTGTGGCTGCTGTTGCATTTGGATTCATACATGACTTGCCCTTGAGTTATACATTAACCCTTGCAAATGCAGTGGGTGCTGCAACTGCTACGGGGTGTGGTGCTGGTAGAAATGTTGCCAGTTTGGGGAAGGTCCAGGAACTATTGAAGGAATCAAATTTAAACGAGGATGAGAAGTTTTGGGATGAAGTACTGAATGATAATGTGAACTCCCGAGATGTAACTTTACTGTCAAAAATGGTTGTAAATGGTAATAGTCAGGTAAACCGTGTCTCCCTACAAAAGGTGGTATCCGAAGTGCTGCCCAAGCTTGAATTTGCGCCAAAGATGACTGGCTCCTTCAAATAGACGATGCAGTTTTTCTGGGACAAATAAATTTTGTTGTTGTTACCATCATTCTGATTGATTGTTGCATATTCACCCCTTAAAAAGAAATGCATGAGTTGCAGGTGCTCTAGCTTGCGGATTATGAAGTGCACAGTTGTATTAGGGCTGCTACCTTGCTGGTGGTCGAACCGACAGTTTTGTTGATAGAGTAAGAGGTGTCCAGATACTATTCATGATCTGCTTGCATGCATGCGAGAGGGATTGGCAGATAGATTGAGCGTTAGTGTTTGAGAGAAATTGCATGATCAAGTTGCTTGTGATTCCTGATTTTTTCTACGTGCACACATGAGAAGCTGTGCCTTGCTTCTTGTAATTTGATTCTTACATCTAACATACAGAAGAAAACATGGGCAATCTGTTTTACAATGGAAGCCATATAGCCATACATTTCTAGTTTAGGATGAGTAGAAGACACCAATTCATGTTTGCAACACGTCCATATTACCATTTATGATACAAATACTTGGGCACTC</genome_strand>
        <mrna_strand>GGCTTGCCTTCCCTTTAAGCAGGGAGGGACTGAGAATTTTCTGAATGCATACTCACGCCGCCATATCCTTCAAACCTTCATCCAGTGGCTTGTTCTCTCTCAATCCAGGAATCTTCCAAAACCCTAGTTTTGTAATTCGCCCACTCAGAAACAAGCTTCGTTATTCCATTCTTAATTGCAGAGGCGTTGAAATTCCATTTCCTAAACTCCGCCCAAGCATTAATTCTGTCAACAATGGCTCCACAAGTATCGCCGCTGCTGTCAAAGATGTTGATATTGCTACGCTTGGGAATCTCTGTGTCGATATTGTTCTCAATGTACCGGAGTTACCTCCTAAGCCTTTAGAGCAACGAAAGGCTTATCTGGAACAGTTGTCCAAATCCCCGCCTGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTACTGGGAGGCAGGTGGAAACTGCAATGTGGCTATAGCAGCAGCAAGGCTTGGCCTACGTTGCATCTCTGTTGGTCATGTAGGTGATGAGATCTATGGACGGTTCCTCATTGACGTGCTTAGTGATGAAGGTATTAGTATAGTTGGGATGAATGAGCGGAGTGAAGCACTTAATCTTTCAAGTTCTGAAAATGGAACACTACTGTGCTGGGTGTTAGTGGACCCTTCGCAGAGACATGGCTTTTGCAG............................................................................................................................................................TCGTGCAGATTTTAGTGCAGATCCTGCTTTCAGTTGGATGACCAGACTATCTACTGAAGTAAAGATGGCTATTAGAAAATCAAAGATCCTCTTTTGCAATGGTTATGACTTTGATGAACTCTCCCCTAGCCTTCTTGAATCTGCTCTTGAGTGTGCTGTGGAATCTGGGACATCTATCTTTTTTGACCCTGGACCACGAGGTAGGAGTCTTATCGCAGGAAGACCTGAAGAACAAAGAACAATTGGAAAGTTGTTGACGATGAGTGAAGTGCTTCTACTGACTTCTGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATCTTTAACTGGTATCAAAGATCCAATTTTAGCGGGCCAGGATTTGCTCAATAACGGAGTTTGTACTAAGTGGGTGATTGTTAAGATGGGTCCGAAGGGTTCAATTTTAATCACTAAGTCGAGCATAACGTGTGCACCTGCTTTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATATAATAGACACTGTGGGCTGTGGAGATAGTTTTGTGGCTGCTGTTGCATTTGGATTCATACATGACTTGCCCTTGAGTTATACATTAACCCTTGCAAATGCAGTGGGTGCTGCAACTGCTACGGGGTGTGGTGCTGGTAGAAATGTTGCCAGTTTGGGGAAGGTCCAGGAACTATTGAAGGAATCAAATTTAAACGAGGATGAGAAGTTTTGGGATGAAGTACTGAATGATAATGTGAACTCCCGAGATGTAACTTTACTGTCAAAAATGGTTGTAAATGGTAATAGTCAGGTAAACCGTGTCTCCCTACAAAAGGTGGTATCCGAAGTGCTGCCCAAGCTTGAATTTGCGCCAAAGATGACTGGCTCCTTCAAATAGACGATGCAGTTTTTCTGGGACAAATAAATTTTGTTGTTGTTACCATCATTCTGATTGATTGTTGCATATTCACCCCTTAAAAAGAAATGCATGAGTTGCAGGTGCTCTAGCTTGCGGATTATGAAGTGCACAGTTGTATTAGGGCTGCTACCTTGCTGGTGGTCGAACCGACAGTTTTGTTGATAGAGTAAGAGGTGTCCAGATACTATTCATGATCTGCTTGCATGCATGCGAGAGGGATTGGCAGATAGATTGAGCGTTAGTGTTTGAGAGAAATTGCATGATCAAGTTGCTTGTGATTCCTGATTTTTTCTACGTGCACACATGAGAAGCTGTGCCTTGCTTCTTGTAATTTGATTCTTACATCTAACATACAGAAGAAAACATGGGCAATCTGTTTTACAATGGAAGCCATATAGCCATACATTTCTAGTTTAGGATGAGTAGAAGACACCAATTCATGTTTGCAACACGTCCATATTACCATTTATGATACAAATACTTGGGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545703" ref_strand="+" ref_description="SGN-E545703 [TUS-68-L1]">
      <seq>caaaccttcatccagtggcttgttctctctcaatccaggaatcttccaaaaccctagttttgtaattcgcccactcagaaacaagcttcgttattccattcttaattgcagaggcgttgaaattccatttcctaaactccgcccaagcattaattctgtcaacaatggctccacaagtatcgccgctgctgtcaaagatgttgatattgctacgcttgggaatctctgtgtcgatattgttctcaatgtaccggagttacctcctaagcctttagaacaacgaaaggcttatctggaacagttgtccaaatccccgcctgatacgcggtactgggaggcaggtggaaactgcaatgtggctatagcagcagcaaggcttggcctacgttgcatctctgttggtcatgtaggtgatgagatctatggacggttcctcattgatgtgcttagtgatgaaggtattagtatagttggggatgaatgagcggagtgaagcacttaatctttcaagttctgaaaatggaacactactgtgctgggtgttagtggacccttcgcagagacatggcttttgcagtcgtgcagattttagtgcagatcctgctttcagttggatgaccagactatctactgaagtaaagatggctattagaaaatcaaagatcctcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="+" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="9354" stop="12368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9654" g_stop="9978" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9979" i_stop="11565" i_length="1587">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11566" g_stop="11816" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="577" r_length="252" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11817" i_stop="11972" i_length="156">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11973" g_stop="12068" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="673" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="+" ref_id="SGN-E545703" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9654" e_stop="9978"/>
          <exon e_start="11566" e_stop="11816"/>
          <exon e_start="11973" e_stop="12068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCTTCATCCAGTGGCTTGTTCTCTCTCAATCCAGGAATCTTCCAAAACCCTAGTTTTGTAATTCGCCCACTCAGAAACAAGCTTCGTTATTCCATTCTTAATTGCAGAGGCGTTGAAATTCCATTTCCTAAACTCCGCCCAAGCATTAATTCTGTCAACAATGGCTCCACAAGTATCGCCGCTGCTGTCAAAGATGTTGATATTGCTACGCTTGGGAATCTCTGTGTCGATATTGTTCTCAATGTACCGGAGTTACCTCCTAAGCCTTTAGAACAACGAAAGGCTTATCTGGAACAGTTGTCCAAATCCCCGCCTGATACGGTTCGTCTGTTTTTATTGAACTACAGATTGATTATAGAATATTTTGTTTTTTCTTGTTACCGTTATTTGTTGGTTTCTGTTTATACAGAATATAGTTTTCTGGTTTTTGCAAATTTATTGGATGCTAGTGCAGAAACCAAGTGTTCCTTTGGTTTCATTTATACGCAGTTAATACAGTGTACAATTAAGCTATTTGTAGTCCTAATTACCCCAAAAGCTCAAAAAATACTTGGCTACGAATGGTTGATGTTAATGTGAGTTGTACATATTATAGTAGTGATAGTTGAAGAAAATACTGAAGTAATAGTTGAAAATTTTAATTTGATAGATAAAATATACATAAAAGTTTTAGATGGATTTATGTTAGAAATGTTGATATCTTGGATGTCTTGAAAGAAAAAGAGTGTAATAGTAGAAAGTCCTTAAAACCCTAGAGAAAAAAACAAGAAAAGAAAAATGAATTGGGATGGAAGGAGTACTGTGACAACTCAATGAAGTTCTGAAGCACAAATGATTCTACATAAGGCCATCTACCGAACACATTTGACCATATAGATTTTGGAGAGTTGAATAAGTAGTCAGTCTTTTTTGATGGTTATTTTTGTACTTTGTGAATGCATAATTATTTTATCTTTTCTGATAATCGTGGTGTCCGGTCTGCACACTTCAATTAACTCCACGGGATACTTGTCACCTCCTACTAGCAATAGGTACCAAGTTACTCTGTTCACCAAGGCTAGAACAGATAGGAAGAAATCACCTAGTGTTTTGTCATTGTAGATACATAATTTTTCGTCTAGAAAACTATATATTTTGTAACCAGACTGCATTCACAACCAATTATTTTATCAACAATGACACTATTAAGTCGTGAAATACTAGTTATTAGAGCATCAAATGCATCTATAGAAGATTTGGCTCAAATATGGTTGAGCTCATTTGCATGTTAAATGAATGATGTAGTTGATTAAGTTTCTCCACCACATTTTGCTCCCAATTCTTGGTGGTCAATGAAGTGGGAACTGGGAAGGTAACCATTAATTCTCAAGTTCAAAATCAACTTGTGTTCAAATTCCGGCGAAGGCAAAAATAGCCATTAGGTGATTCCTTCACATCGGTGGAAAGAGTTATTTGGTATCTATGTTGGTGGGAAAAACCACATACTCAATCGTATAGTTCAGGTGTGCACAAGCCGACTTGTCAGCAATCATCATAAAATAAAAGTCTATTTTTACCACATTTTGGGTTCAAGCCCACTATTTTAACAAAGTAAAATATGTGGTTTAATGCTTGGATGCTATCATCTTTGGAAGATGTTATCTTCAGTTGCAATAGCAGAATTTTGGAAATGTAATGGGGTAATAGTGTATTCCCAGCTCTCCAGCTCTTGACTTCTACGCCTACATATGTTTTCTAGACAGCTTCAGTTAAGTTGGAATATAGAAATATTGAAGTATTATCTACATACCAGTTCAGTGATGCTGAAAATGTGTGGTATTAGCACCCCTGTTGCATCATCCTTTTATATTATTTCCTTATGGTTGTATGTATGTTAAGTGATATCTTGATTATTTGACCCTGTTTCAGCGGTACTGGGAGGCAGGTGGAAACTGCAATGTGGCTATAGCAGCAGCAAGGCTTGGCCTACGTTGCATCTCTGTTGGTCATGTAGGTGATGAGATCTATGGACGGTTCCTCATTGATGTGCTTAGTGATGAAGGTATTAGTATAGTT-GGGATGAATGAGCGGAGTGAAGCACTTAATCTTTCAAGTTCTGAAAATGGAACACTACTGTGCTGGGTGTTAGTGGACCCTTCGCAGAGACATGGCTTTTGCAGGTCCTTTTGATCTTTCCCTCTCACTTGGTGCATAATTTCTTGATCATTGTTTGGCCCACTTTATGTTGCACGTAGAAAGTTATCATTGTCTTTCTTTTATAAGATAAGGTATAAAAAGGATCATAGTCTAACCTTTAAGACGTTAATGTTTTCCAGTCGTGCAGATTTTAGTGCAGATCCTGCTTTCAGTTGGATGACCAGACTATCTACTGAAGTAAAGATGGCTATTAGAAAATCAAAGATCCTCTTTTG</genome_strand>
        <mrna_strand>CAAACCTTCATCCAGTGGCTTGTTCTCTCTCAATCCAGGAATCTTCCAAAACCCTAGTTTTGTAATTCGCCCACTCAGAAACAAGCTTCGTTATTCCATTCTTAATTGCAGAGGCGTTGAAATTCCATTTCCTAAACTCCGCCCAAGCATTAATTCTGTCAACAATGGCTCCACAAGTATCGCCGCTGCTGTCAAAGATGTTGATATTGCTACGCTTGGGAATCTCTGTGTCGATATTGTTCTCAATGTACCGGAGTTACCTCCTAAGCCTTTAGAACAACGAAAGGCTTATCTGGAACAGTTGTCCAAATCCCCGCCTGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTACTGGGAGGCAGGTGGAAACTGCAATGTGGCTATAGCAGCAGCAAGGCTTGGCCTACGTTGCATCTCTGTTGGTCATGTAGGTGATGAGATCTATGGACGGTTCCTCATTGATGTGCTTAGTGATGAAGGTATTAGTATAGTTGGGGATGAATGAGCGGAGTGAAGCACTTAATCTTTCAAGTTCTGAAAATGGAACACTACTGTGCTGGGTGTTAGTGGACCCTTCGCAGAGACATGGCTTTTGCAG............................................................................................................................................................TCGTGCAGATTTTAGTGCAGATCCTGCTTTCAGTTGGATGACCAGACTATCTACTGAAGTAAAGATGGCTATTAGAAAATCAAAGATCCTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312526" ref_strand="+" ref_description="SGN-E312526 [cLEZ-20-B16]">
      <seq>aaaccttcatccagtggcttgttctctctcaatccaagagacttccaaaaccctagttttgtaattcgcccacttcagaaacaagcttcgttattccattcttaattgcagaggcgttgaaattccatttcctaaactccccccaagcattaattctgtcaacaatggctccacaagtatcgcccctgctgtcaaagaagttgatattgctacccttgggaatctctgtgtcgatattgttctcaatgtaccggagttacctcctaagcctttagaacaacgaaaggcttatctggaacagttgtccaaatccccgcctgatacgcggtactgggaggcaggtggaaactgcaatgtggctatagcagcagcaaggcttggcctacgttgcatctctgttggtcatgtangtgatgagatctatggacggttcctcattgatgtgcttagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="+" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="9355" stop="11994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9655" g_stop="9978" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9979" i_stop="11565" i_length="1587">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11566" g_stop="11694" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="454" r_length="129" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="+" ref_id="SGN-E312526" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9655" e_stop="9978"/>
          <exon e_start="11566" e_stop="11694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTCATCCAGTGGCTTGTTCTCTCTCAATCCAGGAATCTTCCAAAACCCTAGTTTTGTAATTCGCCCAC-TCAGAAACAAGCTTCGTTATTCCATTCTTAATTGCAGAGGCGTTGAAATTCCATTTCCTAAACTCCGCCCAAGCATTAATTCTGTCAACAATGGCTCCACAAGTATCGCCGCTGCTGTCAAAGATGTTGATATTGCTACGCTTGGGAATCTCTGTGTCGATATTGTTCTCAATGTACCGGAGTTACCTCCTAAGCCTTTAGAACAACGAAAGGCTTATCTGGAACAGTTGTCCAAATCCCCGCCTGATACGGTTCGTCTGTTTTTATTGAACTACAGATTGATTATAGAATATTTTGTTTTTTCTTGTTACCGTTATTTGTTGGTTTCTGTTTATACAGAATATAGTTTTCTGGTTTTTGCAAATTTATTGGATGCTAGTGCAGAAACCAAGTGTTCCTTTGGTTTCATTTATACGCAGTTAATACAGTGTACAATTAAGCTATTTGTAGTCCTAATTACCCCAAAAGCTCAAAAAATACTTGGCTACGAATGGTTGATGTTAATGTGAGTTGTACATATTATAGTAGTGATAGTTGAAGAAAATACTGAAGTAATAGTTGAAAATTTTAATTTGATAGATAAAATATACATAAAAGTTTTAGATGGATTTATGTTAGAAATGTTGATATCTTGGATGTCTTGAAAGAAAAAGAGTGTAATAGTAGAAAGTCCTTAAAACCCTAGAGAAAAAAACAAGAAAAGAAAAATGAATTGGGATGGAAGGAGTACTGTGACAACTCAATGAAGTTCTGAAGCACAAATGATTCTACATAAGGCCATCTACCGAACACATTTGACCATATAGATTTTGGAGAGTTGAATAAGTAGTCAGTCTTTTTTGATGGTTATTTTTGTACTTTGTGAATGCATAATTATTTTATCTTTTCTGATAATCGTGGTGTCCGGTCTGCACACTTCAATTAACTCCACGGGATACTTGTCACCTCCTACTAGCAATAGGTACCAAGTTACTCTGTTCACCAAGGCTAGAACAGATAGGAAGAAATCACCTAGTGTTTTGTCATTGTAGATACATAATTTTTCGTCTAGAAAACTATATATTTTGTAACCAGACTGCATTCACAACCAATTATTTTATCAACAATGACACTATTAAGTCGTGAAATACTAGTTATTAGAGCATCAAATGCATCTATAGAAGATTTGGCTCAAATATGGTTGAGCTCATTTGCATGTTAAATGAATGATGTAGTTGATTAAGTTTCTCCACCACATTTTGCTCCCAATTCTTGGTGGTCAATGAAGTGGGAACTGGGAAGGTAACCATTAATTCTCAAGTTCAAAATCAACTTGTGTTCAAATTCCGGCGAAGGCAAAAATAGCCATTAGGTGATTCCTTCACATCGGTGGAAAGAGTTATTTGGTATCTATGTTGGTGGGAAAAACCACATACTCAATCGTATAGTTCAGGTGTGCACAAGCCGACTTGTCAGCAATCATCATAAAATAAAAGTCTATTTTTACCACATTTTGGGTTCAAGCCCACTATTTTAACAAAGTAAAATATGTGGTTTAATGCTTGGATGCTATCATCTTTGGAAGATGTTATCTTCAGTTGCAATAGCAGAATTTTGGAAATGTAATGGGGTAATAGTGTATTCCCAGCTCTCCAGCTCTTGACTTCTACGCCTACATATGTTTTCTAGACAGCTTCAGTTAAGTTGGAATATAGAAATATTGAAGTATTATCTACATACCAGTTCAGTGATGCTGAAAATGTGTGGTATTAGCACCCCTGTTGCATCATCCTTTTATATTATTTCCTTATGGTTGTATGTATGTTAAGTGATATCTTGATTATTTGACCCTGTTTCAGCGGTACTGGGAGGCAGGTGGAAACTGCAATGTGGCTATAGCAGCAGCAAGGCTTGGCCTACGTTGCATCTCTGTTGGTCATGTAGGTGATGAGATCTATGGACGGTTCCTCATTGATGTGCTTAGTGAT</genome_strand>
        <mrna_strand>AAACCTTCATCCAGTGGCTTGTTCTCTCTCAATCCAAGAGACTTCCAAAACCCTAGTTTTGTAATTCGCCCACTTCAGAAACAAGCTTCGTTATTCCATTCTTAATTGCAGAGGCGTTGAAATTCCATTTCCTAAACTCCCCCCAAGCATTAATTCTGTCAACAATGGCTCCACAAGTATCGCCCCTGCTGTCAAAGAAGTTGATATTGCTACCCTTGGGAATCTCTGTGTCGATATTGTTCTCAATGTACCGGAGTTACCTCCTAAGCCTTTAGAACAACGAAAGGCTTATCTGGAACAGTTGTCCAAATCCCCGCCTGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTACTGGGAGGCAGGTGGAAACTGCAATGTGGCTATAGCAGCAGCAAGGCTTGGCCTACGTTGCATCTCTGTTGGTCATGTANGTGATGAGATCTATGGACGGTTCCTCATTGATGTGCTTAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729075" ref_strand="+" ref_description="SGN-E729075 [LA19DF07]">
      <seq>gtcttagatgttgatattgctacgcttgggaatctctgtgtcgatattgttctcaatgtaccggagttacctcctaagcctttagaacaacgaaaggcttatctggaacagttgtccaaatccccgcctgatacgcggtactgggaggcaggtggaaactgcaatgtggctatagcagcagcaaggcttggcctacgttgcatctctgttggtcatgtaggtgatgagatctatggacggttcctcattgatgtgcttagtgatgaaggtattagtatagttgggatgaatgagcggagtgaagcacttaatctttcaagttctgaaaatggaacactactgtgctgggtgttagtggacccttcgcagagacatggcttttgcagtcgtgcagattttagtgcagatcctgctttcagttggatgaccagactatctactgaagtaaagatggctattagaaaatcaaagatcctcttttgcaatggttatgactttgatgaactctcccctagccttcttgaatctgctcttgagtgtgctgtggaatctgggacatctatcttttttgaccctggaccacgaggtaggagtcttatcgcaggaagacctgaagaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="+" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="9544" stop="12507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9844" g_stop="9978" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9979" i_stop="11565" i_length="1587">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11566" g_stop="11816" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="386" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11817" i_stop="11972" i_length="156">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11973" g_stop="12207" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="621" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="+" ref_id="SGN-E729075" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9844" e_stop="9978"/>
          <exon e_start="11566" e_stop="11816"/>
          <exon e_start="11973" e_stop="12207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAGATGTTGATATTGCTACGCTTGGGAATCTCTGTGTCGATATTGTTCTCAATGTACCGGAGTTACCTCCTAAGCCTTTAGAACAACGAAAGGCTTATCTGGAACAGTTGTCCAAATCCCCGCCTGATACGGTTCGTCTGTTTTTATTGAACTACAGATTGATTATAGAATATTTTGTTTTTTCTTGTTACCGTTATTTGTTGGTTTCTGTTTATACAGAATATAGTTTTCTGGTTTTTGCAAATTTATTGGATGCTAGTGCAGAAACCAAGTGTTCCTTTGGTTTCATTTATACGCAGTTAATACAGTGTACAATTAAGCTATTTGTAGTCCTAATTACCCCAAAAGCTCAAAAAATACTTGGCTACGAATGGTTGATGTTAATGTGAGTTGTACATATTATAGTAGTGATAGTTGAAGAAAATACTGAAGTAATAGTTGAAAATTTTAATTTGATAGATAAAATATACATAAAAGTTTTAGATGGATTTATGTTAGAAATGTTGATATCTTGGATGTCTTGAAAGAAAAAGAGTGTAATAGTAGAAAGTCCTTAAAACCCTAGAGAAAAAAACAAGAAAAGAAAAATGAATTGGGATGGAAGGAGTACTGTGACAACTCAATGAAGTTCTGAAGCACAAATGATTCTACATAAGGCCATCTACCGAACACATTTGACCATATAGATTTTGGAGAGTTGAATAAGTAGTCAGTCTTTTTTGATGGTTATTTTTGTACTTTGTGAATGCATAATTATTTTATCTTTTCTGATAATCGTGGTGTCCGGTCTGCACACTTCAATTAACTCCACGGGATACTTGTCACCTCCTACTAGCAATAGGTACCAAGTTACTCTGTTCACCAAGGCTAGAACAGATAGGAAGAAATCACCTAGTGTTTTGTCATTGTAGATACATAATTTTTCGTCTAGAAAACTATATATTTTGTAACCAGACTGCATTCACAACCAATTATTTTATCAACAATGACACTATTAAGTCGTGAAATACTAGTTATTAGAGCATCAAATGCATCTATAGAAGATTTGGCTCAAATATGGTTGAGCTCATTTGCATGTTAAATGAATGATGTAGTTGATTAAGTTTCTCCACCACATTTTGCTCCCAATTCTTGGTGGTCAATGAAGTGGGAACTGGGAAGGTAACCATTAATTCTCAAGTTCAAAATCAACTTGTGTTCAAATTCCGGCGAAGGCAAAAATAGCCATTAGGTGATTCCTTCACATCGGTGGAAAGAGTTATTTGGTATCTATGTTGGTGGGAAAAACCACATACTCAATCGTATAGTTCAGGTGTGCACAAGCCGACTTGTCAGCAATCATCATAAAATAAAAGTCTATTTTTACCACATTTTGGGTTCAAGCCCACTATTTTAACAAAGTAAAATATGTGGTTTAATGCTTGGATGCTATCATCTTTGGAAGATGTTATCTTCAGTTGCAATAGCAGAATTTTGGAAATGTAATGGGGTAATAGTGTATTCCCAGCTCTCCAGCTCTTGACTTCTACGCCTACATATGTTTTCTAGACAGCTTCAGTTAAGTTGGAATATAGAAATATTGAAGTATTATCTACATACCAGTTCAGTGATGCTGAAAATGTGTGGTATTAGCACCCCTGTTGCATCATCCTTTTATATTATTTCCTTATGGTTGTATGTATGTTAAGTGATATCTTGATTATTTGACCCTGTTTCAGCGGTACTGGGAGGCAGGTGGAAACTGCAATGTGGCTATAGCAGCAGCAAGGCTTGGCCTACGTTGCATCTCTGTTGGTCATGTAGGTGATGAGATCTATGGACGGTTCCTCATTGATGTGCTTAGTGATGAAGGTATTAGTATAGTTGGGATGAATGAGCGGAGTGAAGCACTTAATCTTTCAAGTTCTGAAAATGGAACACTACTGTGCTGGGTGTTAGTGGACCCTTCGCAGAGACATGGCTTTTGCAGGTCCTTTTGATCTTTCCCTCTCACTTGGTGCATAATTTCTTGATCATTGTTTGGCCCACTTTATGTTGCACGTAGAAAGTTATCATTGTCTTTCTTTTATAAGATAAGGTATAAAAAGGATCATAGTCTAACCTTTAAGACGTTAATGTTTTCCAGTCGTGCAGATTTTAGTGCAGATCCTGCTTTCAGTTGGATGACCAGACTATCTACTGAAGTAAAGATGGCTATTAGAAAATCAAAGATCCTCTTTTGCAATGGTTATGACTTTGATGAACTCTCCCCTAGCCTTCTTGAATCTGCTCTTGAGTGTGCTGTGGAATCTGGGACATCTATCTTTTTTGACCCTGGACCACGAGGTAGGAGTCTTATCGCAGGAAGACCTGAAGAACAA</genome_strand>
        <mrna_strand>GTCTTAGATGTTGATATTGCTACGCTTGGGAATCTCTGTGTCGATATTGTTCTCAATGTACCGGAGTTACCTCCTAAGCCTTTAGAACAACGAAAGGCTTATCTGGAACAGTTGTCCAAATCCCCGCCTGATACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTACTGGGAGGCAGGTGGAAACTGCAATGTGGCTATAGCAGCAGCAAGGCTTGGCCTACGTTGCATCTCTGTTGGTCATGTAGGTGATGAGATCTATGGACGGTTCCTCATTGATGTGCTTAGTGATGAAGGTATTAGTATAGTTGGGATGAATGAGCGGAGTGAAGCACTTAATCTTTCAAGTTCTGAAAATGGAACACTACTGTGCTGGGTGTTAGTGGACCCTTCGCAGAGACATGGCTTTTGCAG............................................................................................................................................................TCGTGCAGATTTTAGTGCAGATCCTGCTTTCAGTTGGATGACCAGACTATCTACTGAAGTAAAGATGGCTATTAGAAAATCAAAGATCCTCTTTTGCAATGGTTATGACTTTGATGAACTCTCCCCTAGCCTTCTTGAATCTGCTCTTGAGTGTGCTGTGGAATCTGGGACATCTATCTTTTTTGACCCTGGACCACGAGGTAGGAGTCTTATCGCAGGAAGACCTGAAGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216508" ref_strand="-" ref_description="SGN-E216508 [cLEL-1-A7](-)">
      <seq>taaagatggctattagaaaatcaaagatcctcttttgctatggttatgactttgatgaactctcccctagccttcttgaatctgctcttgagtgtgctgtggaatctgggacatctatcttttttgaccctggaccacgaggtaggagtcttatcgcaggaagacctgaagaacaaagaacaattggaaagttgttgacgatgagtgaagtgcttctactgacttctgaggaggctgcatctttaactggtatcaaagatccaattttagcggtccaggatttgctcaataacggagtttgtactaagtgggtgattgttaagatgggtccgaagggttcaattttaatcactaagtcgagcataacgtgtgcacctgctttcaaggtcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="+" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="11732" stop="14987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12032" g_stop="12264" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12265" i_stop="14532" i_length="2268">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14533" g_stop="14685" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="386" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="+" ref_id="SGN-E216508" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216508" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12032" e_stop="12264"/>
          <exon e_start="14533" e_stop="14685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATGGCTATTAGAAAATCAAAGATCCTCTTTTGCAATGGTTATGACTTTGATGAACTCTCCCCTAGCCTTCTTGAATCTGCTCTTGAGTGTGCTGTGGAATCTGGGACATCTATCTTTTTTGACCCTGGACCACGAGGTAGGAGTCTTATCGCAGGAAGACCTGAAGAACAAAGAACAATTGGAAAGTTGTTGACGATGAGTGAAGTGCTTCTACTGACTTCTGAGGAGGTTTGTGTTTCATACTTGCAAAAATTTGTCTCACTTGTGCCTTCTGCTATTTAACATCTCAATGTGTGGCAAAAAATGATAATAACCCAATTTTGTGAAGATAAAAAATATAATAGTTTCCCTGTGTGCACTTTAATGTTTAAATAATCCATTTAAAAGAGCTCTTCTGGTAGCTAAAAAGTATCTCACTGAACATGTGATATTGGAATCTGGTAGCTAAAGAGTTCTGTTATACGCTTGTAGCTAAAGAGTTCTGTTATATACTGGAATCTGGAAATACTGGTTGTAGTTTTGGTTTATTGACAAAATATGTGCAACTTAGAGGCAGCTGGAATTTATGGTATAAATAAGTCATTTTAAGAAAGTTATACTTGCTCCAGGCTATGGAGTTTTTTGTATTTGAAGCTTTCTATAACTCTTTTGCGTCATATCCTTTTTTTTTTCTTTTAACAATTTATCTGATTCCATTTTTGATATTTTTGAAAATTTGGAGTGTTAGTTTTTTATCCAAGGGTGAACATTTGACAGTAAGAATGCTATGTTTAAAGCTAGTTTTAATGCATTTAGACCTAAATCATGGACTTCTTTACTTTTTATCATTGCTTTGTTGGAGATATAAATGGAGTAACAAAGACAAAAGAGGCATGCATCTTAGAGGGATTCTAATTGGTTAGGGAGGAAAAATTGGTACACAGTGATATATATATATATATATATATATATATATATATATATATATATATATATATGGTAATTGACCTTTTGTATTAAACACCAAGTGAACTATTTACAAGATCCATAACTAGGCTAAAAGCAGCCTGTTATCTTAAGCAAAAACCAACCTAGCACAGAGCTATAATCTAGAATCTAAATCCATGTACAGCAGCTTGAATACTAGGAGATGCTCTAAAATTATGTACTTTTGCAATCTCTCTTGCTATTCTCTCCCAGCTTCTACTTTACTTCTCAACAACTCTTTAAGTTCCTTTCTATCCATAACCATGTACAAATTTAGCATAAACCAGTTTAAAAATTTATGCAGCTTGTGTCTTGCCTTTATCTCTGGTAATGATATTGTGAATGTGTTGGTCCCATTCAGTAGCAGCATGGTCTTGTCTCTGAATCAACACCATCAGGCCTGTTCCAGAATTGTGCAGATTCACATTGTCTGGAGAGATGATCAAATATTTCATCTTTGATTCTGGCACAGATGCACTGTACTCATTTAGTATCTACCATTAAGCCCTATCCTGTAAGTCTATCTGTGGTTAAGAGCTTCTTTTGCACCTAGAGCAACACTGTGAATCTAGCATTAGGCCTGGTATCATTTCTCAACATGAGTCATTTCCATGTCACTCTGGATTGGTCACCTAATAGCATCTTATAAAATATGCCTATAATACCTTTTCCAGCCTTGAGTGATCCCTGCACCTGCTCCATACGGACTCTAGCTTCAAATATTTTCCTTATCATCCTGCTAGCTTGCTATGGCACAACAACATTTGCAAATATTCATGGTGATTTTGCCACTTTTCCATGTCAAATATTCAGTCACGTGGAGCATTGTTTTTTTGTAAGAAATAAAAAGGTTAAGGTGCTAACTGTGAAAAATTAAAGGATACTTATGATAGGGGTGTGTAACACACAAAATTGGGGGTGCAAATGCAGAACTGGTTTTTGGCATTCTCTTTCATGCTGTTACAACATATAAATGGAAAATAATATAAACATTTGAAAAATATAAAAAATTAATATCTGGGAAATTGATTGTTTTTGTGTGTTTGATCATTTTCGTAGGAAGTCCATAAAAGGATTGTTTAGTTGCTTGTTAGAGCAATGCATGTAGTATTAGTATAAATACCGAGTGCGGATAAATTTTTGTTGTAGCAATGTACCCATCTTTGTGAAATTCTAGATCCCCTACTGTACTATTTCCTTGTAGTACCACTACCCCTTTCCATTTTCATGTACATTTTTAGGTTAATAAGGTTAAGCAATGGATGTAGCGTTATCCCTATTATGGTCTGCTGTAGTTGTAAAGTTGACCTCTTGATGCGATATTCGAGCTGATTTGTTGGCTTTTCCCTTGTTGCTATATCATAATGTAGCATAGTGGTTATCTTTTGCTGAATTTTTACTGTGTAAATTATGATGTTCCCCTTTCTTGTAAATCAGTGGACAGTTTTACTGCAGTGATAGCTTTTAGTGTATTGAGAATGTGTTCCCTCCCCGGAAACTTACTTATCTGAATCACTTTGTCTTCTCCAGGCTGCATCTTTAACTGGTATCAAAGATCCAATTTTAGCGGGCCAGGATTTGCTCAATAACGGAGTTTGTACTAAGTGGGTGATTGTTAAGATGGGTCCGAAGGGTTCAATTTTAATCACTAAGTCGAGCATAACGTGTGCACCTGCTTTCAAG</genome_strand>
        <mrna_strand>TAAAGATGGCTATTAGAAAATCAAAGATCCTCTTTTGCTATGGTTATGACTTTGATGAACTCTCCCCTAGCCTTCTTGAATCTGCTCTTGAGTGTGCTGTGGAATCTGGGACATCTATCTTTTTTGACCCTGGACCACGAGGTAGGAGTCTTATCGCAGGAAGACCTGAAGAACAAAGAACAATTGGAAAGTTGTTGACGATGAGTGAAGTGCTTCTACTGACTTCTGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATCTTTAACTGGTATCAAAGATCCAATTTTAGCGGTCCAGGATTTGCTCAATAACGGAGTTTGTACTAAGTGGGTGATTGTTAAGATGGGTCCGAAGGGTTCAATTTTAATCACTAAGTCGAGCATAACGTGTGCACCTGCTTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553506" ref_strand="+" ref_description="SGN-E553506 [cTSC-1-F16]">
      <seq>ttaacgggaagggacacacaaaatgagtgcccaagtatttgtatcataaatggtaatatggacgtgttgcaaacatgaattggtgtcttctactcatcctaaactagaaatgtatggctatatggcttccattgtaaaacagattgcccatgttttcttctgtatgttagatgtaagaatcaaattacaagaagcaaggcacagcttctcatgtgtgcacgtagaaaaaatcaggaatcacaagcaacttgatcatgcaatttctctcaaacactaacgctcaatctatctgccaatccctctcgcatgcatgcaagcagatcatgaatagtatctggacacctcttactctatcaacaaaactgtcggttcgaccaccagcaaggtagcagccctaatacaactgtgcacttcataatccgcaagctagagcacctgcaactcatgcatttctttttaaggggtgaatatgcaacaatcaatcagaatgatggtaacaacaacaaaatttatttgtcccagaaaaactgcatcgtctatttgaaggagccagtcatctttggcgcaaattcaagcttgggcagcacttcggataccaccttttgtagggagacacggtttacctgactattaccatttacaaccatttttgacagtaaagttacatctcgggagttcacattatcattcagtacttcatcccaaaacttctcatcctcgtttaaatttgattccttcaatagttcctggaccttccccaaactggcaacatttctaccagcaccacaccccgtagcagttgcagcacccactgcatttgcaagggttaatgtataactcaagggcaagtcatgtatgaatcaaaatgcaacagcaaccacaaaactatctccacagcccacagtgtctattatattgaccttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="16561" stop="15034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16262" g_stop="15335" g_length="928"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="927" r_length="927" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E553506" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16262" e_stop="15335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACGGGAAGGGACACACAAAATGAGTGCCCAAGTATTTGTATCATAAATGGTAATATGGACGTGTTGCAAACATGAATTGGTGTCTTCTACTCATCCTAAACTAGAAATGTATGGCTATATGGCTTCCATTGTAAAACAGATTGCCCATGTTTTCTTCTGTATGTTAGATGTAAGAATCAAATTACAAGAAGCAAGGCACAGCTTCTCATGTGTGCACGTAGAAAAAATCAGGAATCACAAGCAACTTGATCATGCAATTTCTCTCAAACACTAACGCTCAATCTATCTGCCAATCCCTCTCGCATGCATGCAAGCAGATCATGAATAGTATCTGGACACCTCTTACTCTATCAACAAAACTGTCGGTTCGACCACCAGCAAGGTAGCAGCCCTAATACAACTGTGCACTTCATAATCCGCAAGCTAGAGCACCTGCAACTCATGCATTTCTTTTTAAGGGGTGAATATGCAACAATCAATCAGAATGATGGTAACAACAACAAAATTTATTTGTCCCAGAAAAACTGCATCGTCTATTTGAAGGAGCCAGTCATCTTTGGCGCAAATTCAAGCTTGGGCAGCACTTCGGATACCACCTTTTGTAGGGAGACACGGTTTACCTGACTATTACCATTTACAACCATTTTTGACAGTAAAGTTACATCTCGGGAGTTCACATTATCATTCAGTACTTCATCCCAAAACTTCTCATCCTCGTTTAAATTTGATTCCTTCAATAGTTCCTGGACCTTCCCCAAACTGGCAACATTTCTACCAGCACCACACCCCGTAGCAGTTGCAGCACCCACTGCATTTGCAAGGGTTAATGTATAACTCAAGGGCAAGTCATGTATGAATCCAAATGCAACAGCAGCCACAAAACTATCTCCACAGCCCACAGTGTCTATTATATTGACCTGTTACA</genome_strand>
        <mrna_strand>TTAACGGGAAGGGACACACAAAATGAGTGCCCAAGTATTTGTATCATAAATGGTAATATGGACGTGTTGCAAACATGAATTGGTGTCTTCTACTCATCCTAAACTAGAAATGTATGGCTATATGGCTTCCATTGTAAAACAGATTGCCCATGTTTTCTTCTGTATGTTAGATGTAAGAATCAAATTACAAGAAGCAAGGCACAGCTTCTCATGTGTGCACGTAGAAAAAATCAGGAATCACAAGCAACTTGATCATGCAATTTCTCTCAAACACTAACGCTCAATCTATCTGCCAATCCCTCTCGCATGCATGCAAGCAGATCATGAATAGTATCTGGACACCTCTTACTCTATCAACAAAACTGTCGGTTCGACCACCAGCAAGGTAGCAGCCCTAATACAACTGTGCACTTCATAATCCGCAAGCTAGAGCACCTGCAACTCATGCATTTCTTTTTAAGGGGTGAATATGCAACAATCAATCAGAATGATGGTAACAACAACAAAATTTATTTGTCCCAGAAAAACTGCATCGTCTATTTGAAGGAGCCAGTCATCTTTGGCGCAAATTCAAGCTTGGGCAGCACTTCGGATACCACCTTTTGTAGGGAGACACGGTTTACCTGACTATTACCATTTACAACCATTTTTGACAGTAAAGTTACATCTCGGGAGTTCACATTATCATTCAGTACTTCATCCCAAAACTTCTCATCCTCGTTTAAATTTGATTCCTTCAATAGTTCCTGGACCTTCCCCAAACTGGCAACATTTCTACCAGCACCACACCCCGTAGCAGTTGCAGCACCCACTGCATTTGCAAGGGTTAATGTATAACTCAAGGGCAAGTCATGTATGAATCAAAATGCAACAGCAACCACAAAACTATCTCCACAGCCCACAGTGTCTATTATATTGACCT-TGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733063" ref_strand="+" ref_description="SGN-E733063 [LB03DE06]">
      <seq>gttgcatttggattcatacatgacttgcccttgagttatacattaacccttgcaaatgcagtgggtgctgcaactgctacggggtgtggtgctggtagaaatgttgccagtttggggaaggtccaggaactattgaaggaatcaaatttaaacgaggatgagaagttttgggatgaagtactgaatgataatgtgaactcccgagatgtaactttactgtcaaaaatggttgtaaatggtaatagtcaggtaaaccgtgtctccctacaaaaggtggtatccgaagtgctgcccaagcttgaatttgcgccaaagatgactggctccttcaaatagacgatgcagtttttctgggacaaataaattttgttgttgttaccatcattctgattgattgttgcatattcaccccttaaaaagaaatgcatgagttgcaggtgctctagcttgcggattatgaagtgcacagttgtattagggctgctaccttgctggtggtcgaaccgacagttttgttgatagagtaagaggtgtccagatactattcatgatctgcttgcatgcatgcgagagggattggcagatagattgagcgttagtgtttgagagaaattgcatgatcaagttgcttgtgattcctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="+" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="15091" stop="16332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15391" g_stop="16031" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="653"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="+" ref_id="SGN-E733063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15391" e_stop="16031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCATTTGGATTCATACATGACTTGCCCTTGAGTTATACATTAACCCTTGCAAATGCAGTGGGTGCTGCAACTGCTACGGGGTGTGGTGCTGGTAGAAATGTTGCCAGTTTGGGGAAGGTCCAGGAACTATTGAAGGAATCAAATTTAAACGAGGATGAGAAGTTTTGGGATGAAGTACTGAATGATAATGTGAACTCCCGAGATGTAACTTTACTGTCAAAAATGGTTGTAAATGGTAATAGTCAGGTAAACCGTGTCTCCCTACAAAAGGTGGTATCCGAAGTGCTGCCCAAGCTTGAATTTGCGCCAAAGATGACTGGCTCCTTCAAATAGACGATGCAGTTTTTCTGGGACAAATAAATTTTGTTGTTGTTACCATCATTCTGATTGATTGTTGCATATTCACCCCTTAAAAAGAAATGCATGAGTTGCAGGTGCTCTAGCTTGCGGATTATGAAGTGCACAGTTGTATTAGGGCTGCTACCTTGCTGGTGGTCGAACCGACAGTTTTGTTGATAGAGTAAGAGGTGTCCAGATACTATTCATGATCTGCTTGCATGCATGCGAGAGGGATTGGCAGATAGATTGAGCGTTAGTGTTTGAGAGAAATTGCATGATCAAGTTGCTTGTGATTCCTG</genome_strand>
        <mrna_strand>GTTGCATTTGGATTCATACATGACTTGCCCTTGAGTTATACATTAACCCTTGCAAATGCAGTGGGTGCTGCAACTGCTACGGGGTGTGGTGCTGGTAGAAATGTTGCCAGTTTGGGGAAGGTCCAGGAACTATTGAAGGAATCAAATTTAAACGAGGATGAGAAGTTTTGGGATGAAGTACTGAATGATAATGTGAACTCCCGAGATGTAACTTTACTGTCAAAAATGGTTGTAAATGGTAATAGTCAGGTAAACCGTGTCTCCCTACAAAAGGTGGTATCCGAAGTGCTGCCCAAGCTTGAATTTGCGCCAAAGATGACTGGCTCCTTCAAATAGACGATGCAGTTTTTCTGGGACAAATAAATTTTGTTGTTGTTACCATCATTCTGATTGATTGTTGCATATTCACCCCTTAAAAAGAAATGCATGAGTTGCAGGTGCTCTAGCTTGCGGATTATGAAGTGCACAGTTGTATTAGGGCTGCTACCTTGCTGGTGGTCGAACCGACAGTTTTGTTGATAGAGTAAGAGGTGTCCAGATACTATTCATGATCTGCTTGCATGCATGCGAGAGGGATTGGCAGATAGATTGAGCGTTAGTGTTTGAGAGAAATTGCATGATCAAGTTGCTTGTGATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216481" ref_strand="+" ref_description="SGN-E216481 [cLEL-1-O17](-)">
      <seq>tgtctccctacaaaaggtggtatccgaagtgctgcccaagcttgaatttgcgccaaagatgactggctccttcaaatagacgatgcagtttttctgggacaaataaattttgttgttgttaccatcattctgattgattgttgcatattcaccccttaaaaagaaatgcatgagttgcaggtgctctagcttgcggattatgaagtgcacagttgtattagggctgctaccttgctggtggtcgaaccgccagttttgttgatagagtaagaggtgtccagatactattcatgatctgcttgcatgcatgcgagagggattggcagatagattgagcgttagtgtttgagagaaattgcatgatcaagttgcttgtgattcctgattttttctacgtgcacacatgagaagctgtgccttgcttcttgtaatttgattcttacatctcccatacagaagaaaacatgggcaatctgttttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="+" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="15348" stop="16431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15648" g_stop="16130" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="484" polyA_stop="499"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="+" ref_id="SGN-E216481" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15648" e_stop="16130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTCCCTACAAAAGGTGGTATCCGAAGTGCTGCCCAAGCTTGAATTTGCGCCAAAGATGACTGGCTCCTTCAAATAGACGATGCAGTTTTTCTGGGACAAATAAATTTTGTTGTTGTTACCATCATTCTGATTGATTGTTGCATATTCACCCCTTAAAAAGAAATGCATGAGTTGCAGGTGCTCTAGCTTGCGGATTATGAAGTGCACAGTTGTATTAGGGCTGCTACCTTGCTGGTGGTCGAACCGACAGTTTTGTTGATAGAGTAAGAGGTGTCCAGATACTATTCATGATCTGCTTGCATGCATGCGAGAGGGATTGGCAGATAGATTGAGCGTTAGTGTTTGAGAGAAATTGCATGATCAAGTTGCTTGTGATTCCTGATTTTTTCTACGTGCACACATGAGAAGCTGTGCCTTGCTTCTTGTAATTTGATTCTTACATCTAACATACAGAAGAAAACATGGGCAATCTGTTTTACA</genome_strand>
        <mrna_strand>TGTCTCCCTACAAAAGGTGGTATCCGAAGTGCTGCCCAAGCTTGAATTTGCGCCAAAGATGACTGGCTCCTTCAAATAGACGATGCAGTTTTTCTGGGACAAATAAATTTTGTTGTTGTTACCATCATTCTGATTGATTGTTGCATATTCACCCCTTAAAAAGAAATGCATGAGTTGCAGGTGCTCTAGCTTGCGGATTATGAAGTGCACAGTTGTATTAGGGCTGCTACCTTGCTGGTGGTCGAACCGCCAGTTTTGTTGATAGAGTAAGAGGTGTCCAGATACTATTCATGATCTGCTTGCATGCATGCGAGAGGGATTGGCAGATAGATTGAGCGTTAGTGTTTGAGAGAAATTGCATGATCAAGTTGCTTGTGATTCCTGATTTTTTCTACGTGCACACATGAGAAGCTGTGCCTTGCTTCTTGTAATTTGATTCTTACATCTCCCATACAGAAGAAAACATGGGCAATCTGTTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247199" ref_strand="+" ref_description="SGN-E247199 [cLEF-46-I7]">
      <seq>cgctcttgttcacagttctcactcaaatctctttcttcgggtgcgcggactttcagtctctgaaatggctgatgaaaattttgagcagcctgagatgggtaacttgcatgacacagaaaacctggataatatgaataatgttcaagacaatgataatgtgaatggcaaggataacgtgcacgatgctaatcacgtgcacgatgctgatcacgtgcacgatgctgatgatgtgcataacatgaataatattcatgactcagaagccattcctgctttgattaatgcacctgaggagacacatcattctgaagaggataaagttactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="26735" stop="24961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26435" g_stop="26375" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26374" i_stop="25527" i_length="848">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25526" g_stop="25261" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="327" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E247199" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26435" e_stop="26375"/>
          <exon e_start="25526" e_stop="25261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCTTGTACACAGTTCGCACTCAAATCTCTTTCTTCGATTGCGCAAACTTTCAGTCTCTGTAAGTATTTCATGCTAACCATATGTAATTTACGAATCTCGCATATTAAATCTATGTTTTTCTATGTGTTTGCATTTGTTTACAAATTTGTTGTCAATTTTAAGGATTGTTTATGTGTTTCAGGATGATTTTTTTTTTTTTTTGGGGAAAGAGATGGTTCTAAAAGGTTTTAGAATTGCGGGTTTTTTGAATTAGGGTTTTAAAACTTCAGGGAGCGTTGGTGAAACCCGAGGTTGATGGTGCGAAGCTTTGGGTTTGTTTGAGTTTTTGGCAACGTGGGATTCCCGAGGTGTTAGGGTTTGGGATTTTACAGGTTTTAGACATAGGTTTCTTTGTAACGAACTCTCCGAAAGTGTTGCGATATCGGTGTTGGATCCTCCTAAAATGCACCACTTTTGGAGAATCTGACTCACTTGATGGCATTTTTGATAATGCACCCACCCTCTAATCTTCTGGTCTAAATCCAAGAGTAGGTCGCCATTACTCCGTTAGAATTTCGAGTTGTGAAGTGGCATCTTATCTGTATTTGCCTTTGCAGTTGAACCTAAGCCTTGGTGGCTTTCTAAACTTGGTACTAGAGGATGATTTCGACCAAAGAAATGTGGTAGTTTGTTAGAAGGTATTGGGTTTTGTGACTTAGAACTTCAGTATGATTTTTGCTCTCGAGAATGCTAGGCTCATGATTGAGAAATTTCTTGGGTCGGTGATGCATGCGTGATAAAGTTGATTACTGTTATGTTCCAGCTTCTGCACACGTGAAATGCAGGAGGCCTTTCAGAGTTCAATAGTTCATTTAGCCAATTGCTGTAGCTGGATATTTTTCTAATGTCTTTTTGTTTTTCTTCCAGGAAATGGCTGATGAAAATTTTGAGCAGCCTGAGATGGGTAACTTGCATGACACAGAAAACCTGGATAATATGAATAATGTTCAAGACAATGATAATGTGAATGGCAAGGATAACGTGCACGATGCTAATCACGTGCACGATGCTGATCACGTGCACGATGCTGATGATGTGCATAACATGAATAATATTCATGACTCAGAAGCCATTCCTGCTTTGATTAATGCACCTGAGGAGACACATCATTCTGAAGAGGATAAAGTTACTCC</genome_strand>
        <mrna_strand>CGCTCTTGTTCACAGTTCTCACTCAAATCTCTTTCTTCGGGTGCGCGGACTTTCAGTCTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCTGATGAAAATTTTGAGCAGCCTGAGATGGGTAACTTGCATGACACAGAAAACCTGGATAATATGAATAATGTTCAAGACAATGATAATGTGAATGGCAAGGATAACGTGCACGATGCTAATCACGTGCACGATGCTGATCACGTGCACGATGCTGATGATGTGCATAACATGAATAATATTCATGACTCAGAAGCCATTCCTGCTTTGATTAATGCACCTGAGGAGACACATCATTCTGAAGAGGATAAAGTTACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538893" ref_strand="+" ref_description="SGN-E538893 [TUS-58-F24](-)">
      <seq>gcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagctcaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaccgctacgagaacgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaaggagccggttaagaaggcacttgcgaagaatgtgaagtctccggcgaagaaggctaccccaaagaggggaaggaagtagaaacacaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttcttagccttgtcctacagtgtttagattttttttttctctttttaattccgtttagggatatggaacagttcttctctgtactgatatatcactctgcttatgagaattagagtatgatgcccttaccttataaatgtccatttctattcagccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65669" stop="64313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65369" g_stop="64614" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E538893" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65369" e_stop="64614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTATAAATGTCCATTTCTATTCAGCCA</genome_strand>
        <mrna_strand>GCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCTCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACTTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTATAAATGTCCATTTCTATTCAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335101" ref_strand="+" ref_description="SGN-E335101 [cTOE-1-I19]">
      <seq>ctgaatagaaatggacatttataaggtgttgcctttggtgcagctttccgacttggagtcgttctcgtagcggtttttgcaaccttagctgtcgtcgtcttagccttcagatttggcttgaccgcagccttggttttggcaggagcagccttaggtttaacagcagctttgggctttgccttggcagcgggttttgccttggcagcgggctttgccttgccttgacggcggcttttggtttcgcagcaggctttgactttgctgcagcaggcttcttcttcgccgggacagcagcagcagcaggcttagaacctgatggaagcttgtaagagttcttaactttcaccagcttctcagaagcaacaaacttcttcaactgggtaagcaacaattttttgaaattagatggtagactcttctgcttttcctcaatgaacttggtaatagcgtgctggctggatccagttctctctttcaatgtcacaatcgcatccttaatcatctgcacgatacaatccaatatcaacttcaatacacattcaacaaagcacaaaagaattatataatcaagtataattcaaacacaaaactgaaaattcaattttcaattacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="+" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="64317" stop="65979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64617" g_stop="64641" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64642" i_stop="64974" i_length="333">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64975" g_stop="65121" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="172" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65122" i_stop="65235" i_length="114">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65236" g_stop="65679" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="615" r_length="443" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="+" ref_id="SGN-E335101" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64617" e_stop="64641"/>
          <exon e_start="64975" e_stop="65121"/>
          <exon e_start="65236" e_stop="65679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATAGAAATGGACATTTATAAGGTAAGGGCATCATACTCTAATTCTCATAAGCAGAGTGATATATCAGTACAGAGAAGAACTGTTCCATATCCCTAAACGGAATTAAAAAGAGAAAAAAAAAATCTAAACACTGTAGGACAAGGCTAAGAAAAGAGAAAATAAACCAGATTTCTATAGCTTCCCATGGGCAAAACACCCAAATCAACCAAAGATTCAGGGAATTTACAGGACTATCCCTACACACAAATCCTCTATTCCTGTGTTTCTACTTCCTTCCCCTCTTTGGGGTAGCCTTCTTCGCCGGAGACTTCACATTCTTCGCAGGTGCCTTCTTAACCGGCTCCTTTTTGGCAGGTGTTGCCTTTGGTGCAGCTTTCCGACTTGGAGTCGTTCTCGTAGCGGTTTTTGCAACCTTAGCTGTCGTCGTCTTAGCCTTCAGATTTGGCTTGACCGCAGCCTTGGTTTTGGCAGGAGCAGCCTTAGGTTTAACAGCAGCTTTGGGCTTGGCAGCAGCCGCTGCTTTGGGCTTAGCCTTAGCAACGGGCTTTGCCTTGGCAGCAGGCTTGGCCTTGGCAGCGGGCTTGGCCTTGGCAGCGGGCTTTGCCTTGGCAGCGGGCTTTGCCTTGGCAGCGGGTTTTGCCTTGGCAGCGGGCTTTGCCTTGGGCTTGACGGCGGCTTTTGGTTTCGCAGCAGGCTTTGACTTTGCTGCAGCAGGCTTCTTCTTCGCCGGGACAGCAGCAGCAGCAGGCTTAGAACCTGATGGAAGCTTGTAAGAGTTCTTAACTTTCACCAGCTTCTCAGAAGCAACAAACTTCTTCAACTGGGTAAGCAACAATTTTTTGAAATTAGATGGTAGACTCTTCTGCTTTTCCTCAATGAACTTGGTAATAGCGTGCTGGCTGGATCCAGTTCTCTCTTTCAATGTCACAATCGCATCCTTAATCATCTGCACGATACAATCCAATATCAACTTCAATACACATTCAACAAAGCACAAAAGAATTATATAATCAAGTATAATTCAAACACAAAACTGAAAATTCAATTTTCAATTACCTC</genome_strand>
        <mrna_strand>CTGAATAGAAATGGACATTTATAAG.............................................................................................................................................................................................................................................................................................................................................GTGTTGCCTTTGGTGCAGCTTTCCGACTTGGAGTCGTTCTCGTAGCGGTTTTTGCAACCTTAGCTGTCGTCGTCTTAGCCTTCAGATTTGGCTTGACCGCAGCCTTGGTTTTGGCAGGAGCAGCCTTAGGTTTAACAGCAGCTTTGG..................................................................................................................GCTTTGCCTTGGCAGCGGGTTTTGCCTTGGCAGCGGGCTTTGCCTT-GCCTTGACGGCGGCTTTTGGTTTCGCAGCAGGCTTTGACTTTGCTGCAGCAGGCTTCTTCTTCGCCGGGACAGCAGCAGCAGCAGGCTTAGAACCTGATGGAAGCTTGTAAGAGTTCTTAACTTTCACCAGCTTCTCAGAAGCAACAAACTTCTTCAACTGGGTAAGCAACAATTTTTTGAAATTAGATGGTAGACTCTTCTGCTTTTCCTCAATGAACTTGGTAATAGCGTGCTGGCTGGATCCAGTTCTCTCTTTCAATGTCACAATCGCATCCTTAATCATCTGCACGATACAATCCAATATCAACTTCAATACACATTCAACAAAGCACAAAAGAATTATATAATCAAGTATAATTCAAACACAAAACTGAAAATTCAATTTTCAATTACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266848" ref_strand="-" ref_description="SGN-E266848 [cLEI-7-F10]">
      <seq>aagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaccgctacgagaacgactccaagtcggaaaggtgcaccaaaggcaacacctgccaaaaaggagccggttaagaaggcacctgcgaagaatgtgaagtctccggcgaagaaggctaccccaaagaggggaaggaagtagaaacacaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttcttagccttgtcctacagtgtttagattttttttttctctttttaattccgtttagggatatggaacagttcttctctgtactgatatatcactctgcttatgagaattagagtatgatgcccttaccttataaatgtccaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65425" stop="64328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65125" g_stop="64629" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="516"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E266848" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266848" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65125" e_stop="64629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTATAAATGTCC</genome_strand>
        <mrna_strand>AAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGGTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTATAAATGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366502" ref_strand="-" ref_description="SGN-E366502 [cLPT-13-D13]">
      <seq>ccaagtcggaaagctgcaccaaaggcaacacctgccaaaaaggagccggttaagaaggcacctgcgaagaatgtgaagtctccggtgaagaaggctaccccaaagaggggaaggaagtagaaacacaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttcttagccttgtcctacagtgtttagattttttttttctctttttaattccgtttagggatatggaacagttcttatctgtactgatatatcactctgcttatgagaattagagtatgatgcccttaccttataaatgtccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65305" stop="64328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65005" g_stop="64629" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="394"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E366502" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366502" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65005" e_stop="64629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTATAAATGTCC</genome_strand>
        <mrna_strand>CCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGTGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTATCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTATAAATGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240549" ref_strand="+" ref_description="SGN-E240549 [cLED-21-C4]">
      <seq>aatgtgaagtctccggcgattaaggctaccccaaagaggggaaggaagtagaaacacaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttcttagccttgtcctacagtgtttagattttttttttctctttttaattccgtttagggatatggaacagttcttctctgtactgatatatcactctgcttatgagaattagagtatgatgcccttaccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65236" stop="64334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64936" g_stop="64629" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E240549" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64936" e_stop="64629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTATAAATGTCC</genome_strand>
        <mrna_strand>AATGTGAAGTCTCCGGCGATTAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714650" ref_strand="+" ref_description="SGN-E714650 [FB12AC02]">
      <seq>ccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaccgctacgagaacgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaaggagccggttaagaaggcacctgcgaagaatgtgaagtctccggcgaagaaggctaccccaaagaggggaaggaagtagaaacacaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttcttagccttgtcctacagtgtttagattttttttttctctttttaattccgtttagggatatggaacagttcttctctgtactgatatatcactctgcttatgagaattagagtatgatgcccttaccttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65463" stop="64334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65163" g_stop="64635" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="543"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E714650" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65163" e_stop="64635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTATAA</genome_strand>
        <mrna_strand>CCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225726" ref_strand="+" ref_description="SGN-E225726 [cLEL-17-D23](-)">
      <seq>aagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaagactgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaccgctacgagaacgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaaggagccggttaagaaggcacctgcgaagaatgtgaagtctccggcgaagaaggctaccccaaagaggggaaggaagtagaaacacaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttcttagccttgtcctacagtgtttagattttttttttctctttttaattccgtttagggatatggaacagttcttctctgtactgatatatcactctgcttatgagaacttagagtatgatgcccttcccttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65449" stop="64334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65149" g_stop="64635" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="533"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E225726" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65149" e_stop="64635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAA-TTAGAGTATGATGCCCTTACCTTATAA</genome_strand>
        <mrna_strand>AAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGACTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAACTTAGAGTATGATGCCCTTCCCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235085" ref_strand="+" ref_description="SGN-E235085 [cLEL-6-D19](-)">
      <seq>agccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaccgctacgagaacgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaaggagccggttaagaaggcacctgcgaagaatgtgaagtctccggcgaagaaggctaccccaaagaggggaaggaagtagaaacacaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttcttagccttgtcctacagtgtttagattttttttttctctttttaattccgtttagggatatggaacagttcttctctgtactgatatatcactctgcttatgagaattagagtatgatgcccttaccttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65367" stop="64334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65067" g_stop="64635" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="448"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E235085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65067" e_stop="64635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTATAA</genome_strand>
        <mrna_strand>AGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234605" ref_strand="+" ref_description="SGN-E234605 [cLEL-6-D19](-)">
      <seq>aaaaaggagccggttaagaaggcacctgcgaagaatgtgaagtctccggcgaagaaggctaccccaaagaggggaaggaagtagaaacacaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttcttagccttgtcctacagtgtttagattttttttttctctttttaattccgtttagggatatggaacagttcttctctgtactgatatatcactctgcttatgagaattagagtatgatgcccttcccttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65269" stop="64334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64969" g_stop="64635" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="336" polyA_stop="350"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E234605" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64969" e_stop="64635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTATAA</genome_strand>
        <mrna_strand>AAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTCCCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691622" ref_strand="+" ref_description="SGN-E691622 [LH_Ea06J12]">
      <seq>aagctcttaaagctgctgccaaggcaaaacctgctgccaaggcaaccttcgatgtcaaggctaagcctgctgccaagtcaaagcccgctgccaaggctaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcaacggctgctgccaagcccaaagctgctgtaaagcctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaaaacgacgacagctaaggttgcaaagaccgctacaagaacgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaaggagccggctaagaaggcacctgcgaagaatgtgaagtccccggcaaaaaaggctaccccaaagaggggaaggaagtagaaacacaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttcttaaccttgttttacagggtttagattttttttttctttttaattccgtttagggatatggaacagttcttctctgtactgatatatcattctgcttatgagaattagagtttatgatgcccttaccttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65576" stop="64334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65287" g_stop="64657" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="657"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E691622" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65287" e_stop="64657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGA</genome_strand>
        <mrna_strand>AAGCTC---TTAAAG-CTGCTGCCAAGGCAAAACCTGCTGCCAAGGCAACCTTCGATGTCAAGGCTAAGCCTGCTGCCAAGTCAAAGCCCGCTGCCAAGGCTAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAACGGCTGCTGCCAAGCCCAAAGCTGCTGTAAAGCCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAAACGACGACAGCTAAGGTTGCAAAGACCGCTACAAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGCTAAGAAGGCACCTGCGAAGAATGTGAAGTCCCCGGCAAAAAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAACCTTGTTTTACAGGGTTTAGA-TTTTTTTTT-TCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCATTCTGCTTATGAGAATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695462" ref_strand="+" ref_description="SGN-E695462 [LH_Ea06J12](-)">
      <seq>gagggcaaagcctgctgccaaggcaaagcctgctgccaaggcaaaacccgctgtcaaggctaagcctgctgccaagtcaaagcccgctgccaaggctaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgtaaagcctaaggctgctcctgcgaaaaccaaggctgcggtcaagccaaatttgaaggctaagacgacgacagctaaggttgcaaagaccgctacgagaacgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaaggagccggctaagaaggcccctgcgaagaatgtgaagtcgccggcgaagaaggctaccccaaagaggggaaggaagtagaaacccaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttcttagccttgttttccagtgtttagattttttttttctttttaattccgtttagggaaggggaacagttcttctctgtnctgatatatcattctctaaaggggaattagagtttatgatgccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65581" stop="64349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65282" g_stop="64657" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E695462" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65282" e_stop="64657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGA</genome_strand>
        <mrna_strand>GAGGGCAAAGCCTGCTGCCAAGGCAAAGCCTGCTGCCAAGGCAAAACCCGCTGTCAAGGCTAAGCCTGCTGCCAAGTCAAAGCCCGCTGCCAAGGCTAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTAAAGCCTAAGGCTGCTCCTGCGAAAACCAAGGCTGCGGTCAAGCCAAATTTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAGACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGCTAAGAAGGCCCCTGCGAAGAATGTGAAGTCGCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACCCAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTTTTCCAGTGTTTAGA-TTTTTTTTT-TCTTTTTAATTCCGTTTAGGGAAGGGGAACAGTTCTTCTCTGTNCTGATATATCATTCTCTAAAGGGGAATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235120" ref_strand="+" ref_description="SGN-E235120 [cLEL-6-J8](-)">
      <seq>aggctaagcccaaagcagcggctgctgccaagcccaaagcggctgttaaccctaagcctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaaggcgacgacagctaaggttgcaaaaaccgctacgagaacgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaaggagccggttaaggaggcccctgcgaagaatgtgaagtcgccgccgaagaaggctaccccaaagaggggaaggaagtaggaacacaggaatataggatttgtgtgcaggcatagaccggtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagcaacctggtttattttctctttttgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65454" stop="64465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65154" g_stop="64765" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="410"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E235120" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65154" e_stop="64765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTA</genome_strand>
        <mrna_strand>AGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCGGCTGTTAACCCTAAGCCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGGCGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGGAGGCCCCTGCGAAGAATGTGAAGTCGCCGCCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGGAACACAGGAATATAGGATTTGTGTGCAGGCATAGACCGGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGCAACCTGGTTTATTTTCTCTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225609" ref_strand="+" ref_description="SGN-E225609 [cLEL-17-I6](-)">
      <seq>aaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagtcgacgacagctaaggttgcaaaaaccgctacgagatcgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaaggagccggttaagaaggcacctgcgaagaatgtgaagtctccggcgaagaaggctaccccaaagaggggaaggaagtagaaacacaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65468" stop="64468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65168" g_stop="64768" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="419"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E225609" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65168" e_stop="64768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTC</genome_strand>
        <mrna_strand>AAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGTCGACGACAGCTAAGGTTGCAAAAACCGCTACGAGATCGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225608" ref_strand="+" ref_description="SGN-E225608 [cLEL-17-I4](-)">
      <seq>gccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaaggcgtcgacagctaaggttgcaaaatccgcttcgagaacgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaaggagccggttaagaaggcacctgcgaagaatgtgaagtctccggcgaataaggctaccccaaagaggggaaggaagtagatacacaggaatagaggctttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65428" stop="64468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65128" g_stop="64768" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="379"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E225608" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65128" e_stop="64768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTC</genome_strand>
        <mrna_strand>GCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGGCGTCGACAGCTAAGGTTGCAAAATCCGCTTCGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAATAAGGCTACCCCAAAGAGGGGAAGGAAGTAGATACACAGGAATAGAGGCTTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225752" ref_strand="+" ref_description="SGN-E225752 [cLEL-17-I6](-)">
      <seq>gctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaaccgctacgagaacgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaaggagccggttaagaaggcacctgcgaagaatgtgaagtctccggcgaagaaggctaccccaaagaggggaaggaagtagaaacacaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65398" stop="64469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65098" g_stop="64769" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="350"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E225752" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65098" e_stop="64769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAA-AACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTT</genome_strand>
        <mrna_strand>GCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371231" ref_strand="+" ref_description="SGN-E371231 [TUS-28-N9](-)">
      <seq>gcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatttgaaggctaagacgacgacagctaaggttgcaaaaaccgctacgagaacgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaaggagccggttaagaaggcacctgcgaagaatgtgaagtctccggcgaagaaggctaccccaaagaggggaaggaagtagaaacacaggaatagaggatttgtgtgtagggatagtcctgtaaattccctgaatctttggttgatttgggtgttttgcccatgggaagctatagaaatctggtttattttctcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="65687" stop="64473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65387" g_stop="64785" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="616" polyA_stop="635"/>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E371231" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65387" e_stop="64785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTG</genome_strand>
        <mrna_strand>GCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATTTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739015" ref_strand="+" ref_description="SGN-E739015 [LC15DC10]">
      <seq>aatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacggctaaggttgcaaaaaccgctacgaagacgactccaagtcggaaagctgcaccaaagggaacacctgccaaaaaggagccggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66270" stop="64655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65970" g_stop="65677" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="64955" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="906" r_length="612" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E739015" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65970" e_stop="65677"/>
          <exon e_start="65566" e_stop="64955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTT</genome_strand>
        <mrna_strand>AATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACGGCTAAGGTTGCAAAAACCGCTACGAAGACGACTCCAAGTCGGAAAGCTGCACCAAAGGGAACACCTGCCAAAAAGGAGCCGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731902" ref_strand="+" ref_description="SGN-E731902 [LA28CA09]">
      <seq>gttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaccgctacgagaacgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66199" stop="64663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65899" g_stop="65677" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="64963" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="827" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E731902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65899" e_stop="65677"/>
          <exon e_start="65566" e_stop="64963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGG</genome_strand>
        <mrna_strand>GTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727391" ref_strand="+" ref_description="SGN-E727391 [LA14CC05]">
      <seq>gaaatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaaccaggctgcggtncagccaaatctgaaggctaagacgacgacagctaaagttgncaaaaccgctacgagaacgactccnnagtcggaagctgcaccaaaggcacacctgccaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66272" stop="64664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65972" g_stop="65677" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="64964" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="898" r_length="602" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E727391" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65972" e_stop="65677"/>
          <exon e_start="65566" e_stop="64964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCC-AAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAG</genome_strand>
        <mrna_strand>GAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAAACCAGGCTGCGGTNCAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAAGTTGNCAAAACCGCTACGAGAACGACTCCNNAGTCGG-AAGCTGCACCAAAGGC-ACACCTGCCAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739414" ref_strand="+" ref_description="SGN-E739414 [LC17BE01]">
      <seq>catctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaccgctacgagaacgactccaagtcggaaagctgcaccaaaggcacacctgccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66269" stop="64665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65970" g_stop="65677" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="64965" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="895" r_length="601" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E739414" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65970" e_stop="65677"/>
          <exon e_start="65566" e_stop="64965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAA</genome_strand>
        <mrna_strand>CATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGC-ACACCTGCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704815" ref_strand="+" ref_description="SGN-E704815 [FA25BD05]">
      <seq>gcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaacgctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaccgctacgagaacgactccaagtcggaaagctgcaccaaaggcaacacctgccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66248" stop="64665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65948" g_stop="65677" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="64965" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="874" r_length="602" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E704815" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65948" e_stop="65677"/>
          <exon e_start="65566" e_stop="64965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAA</genome_strand>
        <mrna_strand>GCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAACGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739114" ref_strand="+" ref_description="SGN-E739114 [LC16AG03]">
      <seq>catctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaccgctacgagaacgactccaagtcggaaagctgcaccaaaggcaacacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66269" stop="64673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65970" g_stop="65677" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="64973" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="888" r_length="594" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E739114" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65970" e_stop="65677"/>
          <exon e_start="65566" e_stop="64973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCT</genome_strand>
        <mrna_strand>CATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735638" ref_strand="+" ref_description="SGN-E735638 [LC02BF01]">
      <seq>cattctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaccgctacgagaacgactcccagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66270" stop="64699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65971" g_stop="65677" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="64999" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="863" r_length="568" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E735638" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65971" e_stop="65677"/>
          <exon e_start="65566" e_stop="64999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTC</genome_strand>
        <mrna_strand>CATTCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727219" ref_strand="+" ref_description="SGN-E727219 [LA14AC11]">
      <seq>gtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgcccaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaccgctacgagaacgactccaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66263" stop="64699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65963" g_stop="65677" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="64999" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="855" r_length="568" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E727219" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65963" e_stop="65677"/>
          <exon e_start="65566" e_stop="64999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTC</genome_strand>
        <mrna_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCCAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736993" ref_strand="+" ref_description="SGN-E736993 [LC08AD05]">
      <seq>aatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttnaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacagctaaagttgcaaaaaccgctacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66270" stop="64715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65970" g_stop="65677" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65015" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="846" r_length="552" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E736993" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65970" e_stop="65677"/>
          <exon e_start="65566" e_stop="65015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACG</genome_strand>
        <mrna_strand>AATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTNAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAAGTTGCAAAAACCGCTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706434" ref_strand="+" ref_description="SGN-E706434 [FA29DG10]">
      <seq>ctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgcccagcccaaagctgctgttnaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaaccgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66267" stop="64717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65967" g_stop="65677" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65017" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="841" r_length="550" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E706434" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65967" e_stop="65677"/>
          <exon e_start="65566" e_stop="65017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTA</genome_strand>
        <mrna_strand>CTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCCAGCCCAAAGCTGCTGTTNAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343267" ref_strand="+" ref_description="SGN-E343267 [cTOF-17-O18]">
      <seq>gccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgcccaaaaccaagctgcggtcaagccaaatctgaaggctaagacgacgacagctaaggttgcaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66156" stop="64721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65856" g_stop="65677" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65021" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="726" r_length="546" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E343267" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65856" e_stop="65677"/>
          <exon e_start="65566" e_stop="65021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACC</genome_strand>
        <mrna_strand>GCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCCAAAACCAAGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728230" ref_strand="+" ref_description="SGN-E728230 [LA17AE03]">
      <seq>gaactctcagtagaatctatacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66272" stop="64750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65972" g_stop="65677" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65050" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="813" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E728230" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65972" e_stop="65677"/>
          <exon e_start="65566" e_stop="65050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTA</genome_strand>
        <mrna_strand>GAACTCTCAGTAGAATCTATACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728093" ref_strand="+" ref_description="SGN-E728093 [LA16CG04]">
      <seq>gagggtcccatttacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgcccagcccaaagctgctgttaaacctaaggctgctcctgcaaaaacaaggctgcggtcaagccaaatctgaaggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66258" stop="64750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65967" g_stop="65677" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65050" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="807" r_length="516" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E728093" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65967" e_stop="65677"/>
          <exon e_start="65566" e_stop="65050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTA</genome_strand>
        <mrna_strand>GAGGGTCCCATTTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCCAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTG-CAAAAACAAGGCTGCGGTCAAGCCAAATCTGAAGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728459" ref_strand="+" ref_description="SGN-E728459 [LA17DE10]">
      <seq>atctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttnaacctaaggctgctcctgccaaaacaaggctgcggtcaagccaaatctgaaggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66258" stop="64750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65958" g_stop="65677" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65050" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="798" r_length="516" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E728459" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65958" e_stop="65677"/>
          <exon e_start="65566" e_stop="65050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTA</genome_strand>
        <mrna_strand>ATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTNAACCTAAGGCTGCTCCTGCCAAAA-CAAGGCTGCGGTCAAGCCAAATCTGAAGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555135" ref_strand="+" ref_description="SGN-E555135 [cTSC-6-I19]">
      <seq>gtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66263" stop="64751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65963" g_stop="65677" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65051" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="803" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E555135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65963" e_stop="65677"/>
          <exon e_start="65566" e_stop="65051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCT</genome_strand>
        <mrna_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700341" ref_strand="+" ref_description="SGN-E700341 [FA12DD06]">
      <seq>cccttttggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaaacccaatctgaaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66192" stop="64751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65892" g_stop="65677" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65051" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="730" r_length="516" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E700341" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65892" e_stop="65677"/>
          <exon e_start="65566" e_stop="65051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCT</genome_strand>
        <mrna_strand>CCCT-TTTGG-AATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAACCCAATCTGAAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698379" ref_strand="+" ref_description="SGN-E698379 [FA06AE06]">
      <seq>ccccttagctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaagctgctcctgccaaaaccaaggctgccgtcaagccaaatctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66171" stop="64754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65874" g_stop="65677" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65054" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="711" r_length="513" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E698379" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65874" e_stop="65677"/>
          <exon e_start="65566" e_stop="65054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAG</genome_strand>
        <mrna_strand>CCCCTTAGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAAGCTGCTCCTGCCAAAACCAAGGCTGCCGTCAAGCCAAATCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554411" ref_strand="+" ref_description="SGN-E554411 [cTSC-4-D21]">
      <seq>gtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66263" stop="64755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65963" g_stop="65677" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65055" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="799" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E554411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65963" e_stop="65677"/>
          <exon e_start="65566" e_stop="65055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAA</genome_strand>
        <mrna_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722491" ref_strand="+" ref_description="SGN-E722491 [FC17BG04]">
      <seq>atcaaagagagaaatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaagccaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66282" stop="64758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65982" g_stop="65677" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65058" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="815" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E722491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65982" e_stop="65677"/>
          <exon e_start="65566" e_stop="65058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAGAGAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCT</genome_strand>
        <mrna_strand>ATCAAAGAGAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731167" ref_strand="+" ref_description="SGN-E731167 [LA26BD06]">
      <seq>agagaaatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagccccaagctgctngtnaacctaaggctgctcctgccaaaacaaggctgcggtcaagccaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66275" stop="64758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65975" g_stop="65677" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65058" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="807" r_length="508" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E731167" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65975" e_stop="65677"/>
          <exon e_start="65566" e_stop="65058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCT</genome_strand>
        <mrna_strand>AGAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCCAAGCTGCTNGTNAACCTAAGGCTGCTCCTGCCAAAA-CAAGGCTGCGGTCAAGCCAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538895" ref_strand="+" ref_description="SGN-E538895 [TUS-58-F24]">
      <seq>gtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatccttcttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaangctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaatgctgctcctgccaaaaccaaggctgcggtcaagccaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66263" stop="64759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65963" g_stop="65677" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65059" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="795" r_length="508" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E538895" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65963" e_stop="65677"/>
          <exon e_start="65566" e_stop="65059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATC</genome_strand>
        <mrna_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTTCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAANGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAATGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727875" ref_strand="+" ref_description="SGN-E727875 [LA16AA12]">
      <seq>agaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcggtcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66261" stop="64766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65961" g_stop="65677" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65066" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="786" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E727875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65961" e_stop="65677"/>
          <exon e_start="65566" e_stop="65066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAG</genome_strand>
        <mrna_strand>AGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554125" ref_strand="+" ref_description="SGN-E554125 [cTSC-3-E8]">
      <seq>gagaaatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagccccaagctgctgttaaacctaaggctgctcctgccaaaaccaaggctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66274" stop="64771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65974" g_stop="65677" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65071" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="794" r_length="496" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E554125" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65974" e_stop="65677"/>
          <exon e_start="65566" e_stop="65071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGG</genome_strand>
        <mrna_strand>GAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCCAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721908" ref_strand="+" ref_description="SGN-E721908 [FC15CF03]">
      <seq>gcgattggcggccaatcggccgaattgacatcaaagagagaacccttagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66288" stop="64782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65982" g_stop="65677" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="335" r_length="306" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65082" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="820" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E721908" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65982" e_stop="65677"/>
          <exon e_start="65566" e_stop="65082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAGAGAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAAC</genome_strand>
        <mrna_strand>ATCAAAGAGAGAACCCTTAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731521" ref_strand="+" ref_description="SGN-E731521 [LA27BE12]">
      <seq>gaggaatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaggctgctcctgccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66274" stop="64783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65974" g_stop="65677" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65083" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="782" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E731521" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65974" e_stop="65677"/>
          <exon e_start="65566" e_stop="65083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAA</genome_strand>
        <mrna_strand>GAGGAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699345" ref_strand="+" ref_description="SGN-E699345 [FA09CH06]">
      <seq>cgagtagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagccccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccagcccaaagctgctgttaaacctaaggctgctcctgccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66251" stop="64783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65951" g_stop="65677" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65083" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="759" r_length="484" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E699345" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65951" e_stop="65677"/>
          <exon e_start="65566" e_stop="65083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAG-CCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAA</genome_strand>
        <mrna_strand>CGAGTAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCC-AGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727866" ref_strand="+" ref_description="SGN-E727866 [LA16AA02]">
      <seq>gacatatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctaaagctgctcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66274" stop="64788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65974" g_stop="65677" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65088" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="777" r_length="479" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E727866" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65974" e_stop="65677"/>
          <exon e_start="65566" e_stop="65088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGC</genome_strand>
        <mrna_strand>GACATATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAAGCTGCTCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731370" ref_strand="+" ref_description="SGN-E731370 [LA26DF12]">
      <seq>gtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctgctgttaaacctagggctgctcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66263" stop="64788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65963" g_stop="65677" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65088" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="766" r_length="479" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E731370" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65963" e_stop="65677"/>
          <exon e_start="65566" e_stop="65088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGC</genome_strand>
        <mrna_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAGGGCTGCTCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721435" ref_strand="+" ref_description="SGN-E721435 [FC13DF04]">
      <seq>aatcggccgaattgacatcaaagagagaaatctcattagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaaaagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcaaaaaagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcaaagaaaaagcctgctgcatcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaaacccaaagcagcggctgctgccaagcccaaagctgctgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66288" stop="64805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65998" g_stop="65677" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65105" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="784" r_length="462" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E721435" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65998" e_stop="65677"/>
          <exon e_start="65566" e_stop="65105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTGGATTATTCACATCAAAGAGAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGACATCAAAGAGAGAAATCTCATTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAAAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAAAAAAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCAAAGAAAAAGCCTGCTGCATCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAACCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346452" ref_strand="+" ref_description="SGN-E346452 [cTOF-23-J3]">
      <seq>cctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgctaaggctaagcccaaagcagcggctgctgccaagcccaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66220" stop="64813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65920" g_stop="65677" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65113" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="698" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E346452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65920" e_stop="65677"/>
          <exon e_start="65566" e_stop="65113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTG</genome_strand>
        <mrna_strand>CCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344086" ref_strand="+" ref_description="SGN-E344086 [cTOF-12-N12]">
      <seq>tcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcanagcccgttgctaaggctaagcccaaagcagcggctgctgccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66266" stop="64823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65966" g_stop="65677" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65123" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="734" r_length="444" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E344086" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65966" e_stop="65677"/>
          <exon e_start="65566" e_stop="65123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAG</genome_strand>
        <mrna_strand>TCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCANAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214864" ref_strand="+" ref_description="SGN-E214864 [cLEC-78-A20]">
      <seq>agaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaagggcaagcccgttgctaaggctaagcccaaagcagcggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66261" stop="64830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65961" g_stop="65677" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65130" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="722" r_length="437" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E214864" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65961" e_stop="65677"/>
          <exon e_start="65566" e_stop="65130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGC</genome_strand>
        <mrna_strand>AGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGGCAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554450" ref_strand="+" ref_description="SGN-E554450 [cTSC-4-F20]">
      <seq>gtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaaacccgctgccaagggcaagcctgctgccaaggcaaagcccgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66263" stop="64857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65963" g_stop="65677" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65157" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="697" r_length="410" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E554450" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65963" e_stop="65677"/>
          <exon e_start="65566" e_stop="65157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGC</genome_strand>
        <mrna_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAACCCGCTGCCAAGGGCAAGCCTGCTGCCAAGGCAAAGCCCGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343369" ref_strand="+" ref_description="SGN-E343369 [cTOF-19-A2]">
      <seq>tagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttaaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaaggccaagcctgctgccaaggcaaagcccgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66262" stop="64857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65962" g_stop="65677" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65157" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="696" r_length="410" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E343369" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65962" e_stop="65677"/>
          <exon e_start="65566" e_stop="65157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGC</genome_strand>
        <mrna_strand>TAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTAAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339396" ref_strand="+" ref_description="SGN-E339396 [cTOF-4-A14]">
      <seq>ctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctgccaggccaagcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66267" stop="64877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65967" g_stop="65677" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65177" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="680" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E339396" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65967" e_stop="65677"/>
          <exon e_start="65566" e_stop="65177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCT</genome_strand>
        <mrna_strand>CTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCC-AGGCCAAGCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318305" ref_strand="+" ref_description="SGN-E318305 [cTOA-29-H14]">
      <seq>tcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgcccaaggcaagcccgctgcccaaggccagcccgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66266" stop="64893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65966" g_stop="65677" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65193" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="664" r_length="374" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E318305" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65966" e_stop="65677"/>
          <exon e_start="65566" e_stop="65193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGC</genome_strand>
        <mrna_strand>TCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCCAAGGCAAGCCCGCTGCCCAAGGCCAGCCCGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371232" ref_strand="+" ref_description="SGN-E371232 [TUS-28-N9]">
      <seq>agaaatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcagagcccgctgccaaggcaaaacccgctgccaaggcaaagcccgctgccaaggcaaagcccgctgccaaggccaagcccgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66273" stop="64894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65973" g_stop="65677" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65194" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="670" r_length="373" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E371232" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65973" e_stop="65677"/>
          <exon e_start="65566" e_stop="65194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTG</genome_strand>
        <mrna_strand>AGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAGAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709954" ref_strand="+" ref_description="SGN-E709954 [FA53DA03]">
      <seq>aattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagccctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcccaaggcaaagcccgctgccaaggcaaaacccgctgccaaggcaaagccccgctgccaaggcaaagcccgctgccaaggccaagcccgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66240" stop="64895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65940" g_stop="65677" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65195" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="638" r_length="374" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E709954" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65940" e_stop="65677"/>
          <exon e_start="65566" e_stop="65195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAG-CCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAG-CCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCT</genome_strand>
        <mrna_strand>AATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308114" ref_strand="+" ref_description="SGN-E308114 [cLEY-14-G23]">
      <seq>gaaatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66272" stop="64983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65972" g_stop="65677" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65283" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="580" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E308114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65972" e_stop="65677"/>
          <exon e_start="65566" e_stop="65283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCC</genome_strand>
        <mrna_strand>GAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305873" ref_strand="+" ref_description="SGN-E305873 [cLEY-17-A16]">
      <seq>tagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaaaccaaaagccgccgtcaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66262" stop="64983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65962" g_stop="65677" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65283" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="570" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E305873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65962" e_stop="65677"/>
          <exon e_start="65566" e_stop="65283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCC</genome_strand>
        <mrna_strand>TAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726102" ref_strand="+" ref_description="SGN-E726102 [LA10BC09]">
      <seq>gtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagagcctgctgcagcaagtcaaagctgctgcgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66263" stop="65004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65963" g_stop="65677" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65303" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="547" r_length="260" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E726102" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65963" e_stop="65677"/>
          <exon e_start="65566" e_stop="65303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAA</genome_strand>
        <mrna_strand>GTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTAC-AGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAG-AGCCTGCTGCAGC-AAGTCAAAG-CTGCTGCGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271779" ref_strand="+" ref_description="SGN-E271779 [cLEM-8-I23]">
      <seq>agaaatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagcaaagtcaaagcctgctgcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66273" stop="65004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65973" g_stop="65677" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65304" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="560" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E271779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65973" e_stop="65677"/>
          <exon e_start="65566" e_stop="65304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAA</genome_strand>
        <mrna_strand>AGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725624" ref_strand="+" ref_description="SGN-E725624 [LA04BD03]">
      <seq>aatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttactagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaagaagcctgctgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66270" stop="65025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65970" g_stop="65677" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65325" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="536" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E725624" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65970" e_stop="65677"/>
          <exon e_start="65566" e_stop="65325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGC</genome_strand>
        <mrna_strand>AATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACTAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725601" ref_strand="+" ref_description="SGN-E725601 [LA04AG07]">
      <seq>gagaaatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacagcttccatcagggtctaagcctgctgctgctgctgtcccggcgaagaagagcctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66274" stop="65028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65974" g_stop="65677" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65328" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="535" r_length="237" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E725601" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65974" e_stop="65677"/>
          <exon e_start="65566" e_stop="65328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGC</genome_strand>
        <mrna_strand>GAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTAC-AGCTTCCATCAGGGTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAG-AGCCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278254" ref_strand="+" ref_description="SGN-E278254 [cLER-9-F9]">
      <seq>taaatttcagtagagtctacacacagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaatatgcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcgaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66271" stop="65039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65972" g_stop="65677" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65339" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="526" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E278254" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65972" e_stop="65677"/>
          <exon e_start="65566" e_stop="65339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTCAGTAGAATCTACACA-AGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGA-GCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAG</genome_strand>
        <mrna_strand>TAAATTTCAGTAGAGTCTACACACAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAATATGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313469" ref_strand="+" ref_description="SGN-E313469 [cTOA-13-H23]">
      <seq>agagatctcagtgcaatctacacaagcagatccaattctcttcttcatttgtgcctcctttcttactagccctagttctctccctatttgggaatttcatttcttcactctgaaatggccactgaagaaccagccatcgtcaacgaggttgttgaagagcaagccgctgctgaaactgtcacggatgaagcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaacgcgaagaagcctgctgcaccaaagaagagaagcgctactccgactcatcctccttactttgagatgatgaacgatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgatgaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactctgacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66273" stop="65044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65973" g_stop="65677" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65344" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="520" r_length="223" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E313469" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65973" e_stop="65677"/>
          <exon e_start="65566" e_stop="65344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGA</genome_strand>
        <mrna_strand>AGAGATCTCAGTGCAATCTACACAAGCAGATCCAATTCTCTTCTTCATTTGTGCCTCCTTTCTTACTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCACTCTGAAATGGCCACTGAAGAACCAGCCATCGTCAACGAGGTTGTTGAAGAGCAAGCCGCTGCTGAAACTGTCACGGATGAAGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAACGCGAAGAAGCCTGCTGCACCAAAGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATGAACGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGATGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTGACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307616" ref_strand="+" ref_description="SGN-E307616 [cLEY-16-O8]">
      <seq>tcagtagaatctacacaagcagatccaattctcttctccatttctgcctgctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaacaactcttacaagcttccatcaggttctaagcctgctgctgctgctgtcccggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66266" stop="65044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65966" g_stop="65677" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65344" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="513" r_length="223" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E307616" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65966" e_stop="65677"/>
          <exon e_start="65566" e_stop="65344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGA</genome_strand>
        <mrna_strand>TCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTGCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAACAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345847" ref_strand="+" ref_description="SGN-E345847 [cTOF-24-E13]">
      <seq>tcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttcaagcttccatcangttctaagcctgctgctgctgctgtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66266" stop="65049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65966" g_stop="65677" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65349" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="507" r_length="217" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E345847" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65966" e_stop="65677"/>
          <exon e_start="65566" e_stop="65349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCC</genome_strand>
        <mrna_strand>TCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTT-CAAGCTTCCATCANGTTCTAAGCCTGCTGCTGCTGCTGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325818" ref_strand="+" ref_description="SGN-E325818 [cTOC-12-O20]">
      <seq>acaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66252" stop="65052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65952" g_stop="65677" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65352" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="491" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E325818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65952" e_stop="65677"/>
          <exon e_start="65566" e_stop="65352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGT</genome_strand>
        <mrna_strand>ACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299910" ref_strand="+" ref_description="SGN-E299910 [cLEW-1-L16]">
      <seq>tcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66266" stop="65054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65966" g_stop="65677" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65354" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="503" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E299910" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65966" e_stop="65677"/>
          <exon e_start="65566" e_stop="65354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCT</genome_strand>
        <mrna_strand>TCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271626" ref_strand="+" ref_description="SGN-E271626 [cLEM-23-C7]">
      <seq>tcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaagttaagaactcttacaagcttccatcaggttctaagcctgctgctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66266" stop="65055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65966" g_stop="65677" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65355" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="502" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E271626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65966" e_stop="65677"/>
          <exon e_start="65566" e_stop="65355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGC</genome_strand>
        <mrna_strand>TCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251012" ref_strand="+" ref_description="SGN-E251012 [cLEG-17-A16]">
      <seq>tagaatctacacaagcagatccaattctcttctccatgtctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaggatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttacccagttgaagaagtttgttgcttctgagaagctggtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66262" stop="65105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65962" g_stop="65677" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65405" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="448" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E251012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65962" e_stop="65677"/>
          <exon e_start="65566" e_stop="65405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAA</genome_strand>
        <mrna_strand>TAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATGTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301952" ref_strand="+" ref_description="SGN-E301952 [cLEX-3-K14]">
      <seq>agaaatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaagatgcgattgtgacattgaaagagagaactggatccagccagcacgctattaccaagttcattgaggaaaagcagaagagtctaccatctaatttcaaaaaattgttgcttaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66273" stop="65143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65973" g_stop="65677" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65443" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="421" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E301952" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65973" e_stop="65677"/>
          <exon e_start="65566" e_stop="65443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCC</genome_strand>
        <mrna_strand>AGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAAGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297162" ref_strand="+" ref_description="SGN-E297162 [cLET-29-C10]">
      <seq>agaaatctcagtagaatctacacaagcagatccaattctcttctccatttctgcctcctttcttcctagccctagttctctccctatttgggaatttcatttcttcgctttgaaatggccactgaagaaccagtcatcgttaacgaggttgttgaagagcaagccgctcctgaaactgtcaaggatgaggcaaaccctccggccaagtctggaaaagcaaaaaaagagaccaaggcgaagaagcctgctgcaccaaggaagagaagcgctactccgactcatcctccttactttgagatgattaaagatgcgattgtgacattgaaagagagaactggatccagccagcacgctattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0085A10-xUS9D/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0085A10.1" temp_strand="-" temp_description="C09SLe0085A10.1  AC220057.1 htgs_phase:3 submitted_to_sgn_as:C09SLe0085A10 upload_account_name:spain">
        <position start="66273" stop="65205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65973" g_stop="65677" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65566" g_stop="65505" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="359" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0085A10.1" gen_strand="-" ref_id="SGN-E297162" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0085A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65973" e_stop="65677"/>
          <exon e_start="65566" e_stop="65505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAGGTAATTGAAAATTGAATTTTCAGTTTTGTGTTTGAATTATACTTGATTATATAATTCTTTTGTGCTTTGTTGAATGTGTATTGAAGTTGATATTGGATTGTATCGTGCAGATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTAC</genome_strand>
        <mrna_strand>AGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG..............................................................................................................ATGATTAAAGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>79</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9584" PGL_stop="16238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9584" e_stop="9978"/>
            <exon e_start="11566" e_stop="11816"/>
            <exon e_start="11973" e_stop="12264"/>
            <exon e_start="14533" e_stop="14685"/>
            <exon e_start="15343" e_stop="16238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.997"/>
          <exon-intron don_prob="0.995" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.340" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="9584" e_stop="9978" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9979" i_stop="11565" i_length="1587"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11566" e_stop="11816" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.541">
            <gDNA_intron_boundary i_start="11817" i_stop="11972" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11973" e_stop="12264" e_length="292"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.983">
            <gDNA_intron_boundary i_start="12265" i_stop="14532" i_length="2268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14533" e_stop="14685" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.340" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14686" i_stop="15342" i_length="657"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15343" e_stop="16238" e_length="896"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9584" stop="9978"/>
              <exon start="11566" stop="11816"/>
              <exon start="11973" stop="12264"/>
              <exon start="14533" stop="14685"/>
              <exon start="15343" stop="16238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9654" stop="9978"/>
              <exon start="11566" stop="11816"/>
              <exon start="11973" stop="12068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9655" stop="9978"/>
              <exon start="11566" stop="11694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9844" stop="9978"/>
              <exon start="11566" stop="11816"/>
              <exon start="11973" stop="12207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12032" stop="12264"/>
              <exon start="14533" stop="14685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216508" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15391" stop="16031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15648" stop="16130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTTGCCTTCCCTTTAAGCAGGGAGGGACTGAGAATTTTCTGAATGCATACTCACGCCGCCATATCCTTCAAACCTTCATCCAGTGGCTTGTTCTCTCTCAATCCAGGAATCTTCCAAAACCCTAGTTTTGTAATTCGCCCACTCAGAAACAAGCTTCGTTATTCCATTCTTAATTGCAGAGGCGTTGAAATTCCATTTCCTAAACTCCGCCCAAGCATTAATTCTGTCAACAATGGCTCCACAAGTATCGCCGCTGCTGTCAAAGATGTTGATATTGCTACGCTTGGGAATCTCTGTGTCGATATTGTTCTCAATGTACCGGAGTTACCTCCTAAGCCTTTAGAACAACGAAAGGCTTATCTGGAACAGTTGTCCAAATCCCCGCCTGATACG : CGGTACTGGGAGGCAGGTGGAAACTGCAATGTGGCTATAGCAGCAGCAAGGCTTGGCCTACGTTGCATCTCTGTTGGTCATGTAGGTGATGAGATCTATGGACGGTTCCTCATTGATGTGCTTAGTGATGAAGGTATTAGTATAGTTGGGATGAATGAGCGGAGTGAAGCACTTAATCTTTCAAGTTCTGAAAATGGAACACTACTGTGCTGGGTGTTAGTGGACCCTTCGCAGAGACATGGCTTTTGCAG : TCGTGCAGATTTTAGTGCAGATCCTGCTTTCAGTTGGATGACCAGACTATCTACTGAAGTAAAGATGGCTATTAGAAAATCAAAGATCCTCTTTTGCAATGGTTATGACTTTGATGAACTCTCCCCTAGCCTTCTTGAATCTGCTCTTGAGTGTGCTGTGGAATCTGGGACATCTATCTTTTTTGACCCTGGACCACGAGGTAGGAGTCTTATCGCAGGAAGACCTGAAGAACAAAGAACAATTGGAAAGTTGTTGACGATGAGTGAAGTGCTTCTACTGACTTCTGAGGAG : GCTGCATCTTTAACTGGTATCAAAGATCCAATTTTAGCGGGCCAGGATTTGCTCAATAACGGAGTTTGTACTAAGTGGGTGATTGTTAAGATGGGTCCGAAGGGTTCAATTTTAATCACTAAGTCGAGCATAACGTGTGCACCTGCTTTCAAG : GTCAATATAATAGACACTGTGGGCTGTGGAGATAGTTTTGTGGCTGCTGTTGCATTTGGATTCATACATGACTTGCCCTTGAGTTATACATTAACCCTTGCAAATGCAGTGGGTGCTGCAACTGCTACGGGGTGTGGTGCTGGTAGAAATGTTGCCAGTTTGGGGAAGGTCCAGGAACTATTGAAGGAATCAAATTTAAACGAGGATGAGAAGTTTTGGGATGAAGTACTGAATGATAATGTGAACTCCCGAGATGTAACTTTACTGTCAAAAATGGTTGTAAATGGTAATAGTCAGGTAAACCGTGTCTCCCTACAAAAGGTGGTATCCGAAGTGCTGCCCAAGCTTGAATTTGCGCCAAAGATGACTGGCTCCTTCAAATAGACGATGCAGTTTTTCTGGGACAAATAAATTTTGTTGTTGTTACCATCATTCTGATTGATTGTTGCATATTCACCCCTTAAAAAGAAATGCATGAGTTGCAGGTGCTCTAGCTTGCGGATTATGAAGTGCACAGTTGTATTAGGGCTGCTACCTTGCTGGTGGTCGAACCGACAGTTTTGTTGATAGAGTAAGAGGTGTCCAGATACTATTCATGATCTGCTTGCATGCATGCGAGAGGGATTGGCAGATAGATTGAGCGTTAGTGTTTGAGAGAAATTGCATGATCAAGTTGCTTGTGATTCCTGATTTTTTCTACGTGCACACATGAGAAGCTGTGCCTTGCTTCTTGTAATTTGATTCTTACATCTAACATACAGAAGAAAACATGGGCAATCTGTTTTACAATGGAAGCCATATAGCCATACATTTCTAGTTTAGGATGAGTAGAAGACACCAATTCATGTTTGCAACACGTCCATATTACCATTTATGATACAAATACTTGGGCACTC</gDNA_template>
            <first_frame> G  L  P  S  L  *  A  G  R  D  *  E  F  S  E  C  I  L  T  P  P  Y  P  S  N  L  H  P  V  A  C  S  L  S  I  Q  E  S  S  K  T  L  V  L  *  F  A  H  S  E  T  S  F  V  I  P  F  L  I  A  E  A  L  K  F  H  F  L  N  S  A  Q  A  L  I  L  S  T  M  A  P  Q  V  S  P  L  L  S  K  M  L  I  L  L  R  L  G  I  S  V  S  I  L  F  S  M  Y  R  S  Y  L  L  S  L  *  N  N  E  R  L  I  W  N  S  C  P  N  P  R  L  I  R :   G  T  G  R  Q  V  E  T  A  M  W  L  *  Q  Q  Q  G  L  A  Y  V  A  S  L  L  V  M  *  V  M  R  S  M  D  G  S  S  L  M  C  L  V  M  K  V  L  V  *  L  G  *  M  S  G  V  K  H  L  I  F  Q  V  L  K  M  E  H  Y  C  A  G  C  *  W  T  L  R  R  D  M  A  F  A   : V  V  Q  I  L  V  Q  I  L  L  S  V  G  *  P  D  Y  L  L  K  *  R  W  L  L  E  N  Q  R  S  S  F  A  M  V  M  T  L  M  N  S  P  L  A  F  L  N  L  L  L  S  V  L  W  N  L  G  H  L  S  F  L  T  L  D  H  E  V  G  V  L  S  Q  E  D  L  K  N  K  E  Q  L  E  S  C  *  R  *  V  K  C  F  Y  *  L  L  R  R :   L  H  L  *  L  V  S  K  I  Q  F  *  R  A  R  I  C  S  I  T  E  F  V  L  S  G  *  L  L  R  W  V  R  R  V  Q  F  *  S  L  S  R  A  *  R  V  H  L  L  S  R :   S  I  *  *  T  L  W  A  V  E  I  V  L  W  L  L  L  H  L  D  S  Y  M  T  C  P  *  V  I  H  *  P  L  Q  M  Q  W  V  L  Q  L  L  R  G  V  V  L  V  E  M  L  P  V  W  G  R  S  R  N  Y  *  R  N  Q  I  *  T  R  M  R  S  F  G  M  K  Y  *  M  I  M  *  T  P  E  M  *  L  Y  C  Q  K  W  L  *  M  V  I  V  R  *  T  V  S  P  Y  K  R  W  Y  P  K  C  C  P  S  L  N  L  R  Q  R  *  L  A  P  S  N  R  R  C  S  F  S  G  T  N  K  F  C  C  C  Y  H  H  S  D  *  L  L  H  I  H  P  L  K  R  N  A  *  V  A  G  A  L  A  C  G  L  *  S  A  Q  L  Y  *  G  C  Y  L  A  G  G  R  T  D  S  F  V  D  R  V  R  G  V  Q  I  L  F  M  I  C  L  H  A  C  E  R  D  W  Q  I  D  *  A  L  V  F  E  R  N  C  M  I  K  L  L  V  I  P  D  F  F  Y  V  H  T  *  E  A  V  P  C  F  L  *  F  D  S  Y  I  *  H  T  E  E  N  M  G  N  L  F  Y  N  G  S  H  I  A  I  H  F  *  F  R  M  S  R  R  H  Q  F  M  F  A  T  R  P  Y  Y  H  L  *  Y  K  Y  L  G  T  </first_frame>
            <second_frame>  A  C  L  P  F  K  Q  G  G  T  E  N  F  L  N  A  Y  S  R  R  H  I  L  Q  T  F  I  Q  W  L  V  L  S  Q  S  R  N  L  P  K  P  *  F  C  N  S  P  T  Q  K  Q  A  S  L  F  H  S  *  L  Q  R  R  *  N  S  I  S  *  T  P  P  K  H  *  F  C  Q  Q  W  L  H  K  Y  R  R  C  C  Q  R  C  *  Y  C  Y  A  W  E  S  L  C  R  Y  C  S  Q  C  T  G  V  T  S  *  A  F  R  T  T  K  G  L  S  G  T  V  V  Q  I  P  A  *  Y   : A  V  L  G  G  R  W  K  L  Q  C  G  Y  S  S  S  K  A  W  P  T  L  H  L  C  W  S  C  R  *  *  D  L  W  T  V  P  H  *  C  A  *  *  *  R  Y  *  Y  S  W  D  E  *  A  E  *  S  T  *  S  F  K  F  *  K  W  N  T  T  V  L  G  V  S  G  P  F  A  E  T  W  L  L  Q  :  S  C  R  F  *  C  R  S  C  F  Q  L  D  D  Q  T  I  Y  *  S  K  D  G  Y  *  K  I  K  D  P  L  L  Q  W  L  *  L  *  *  T  L  P  *  P  S  *  I  C  S  *  V  C  C  G  I  W  D  I  Y  L  F  *  P  W  T  T  R  *  E  S  Y  R  R  K  T  *  R  T  K  N  N  W  K  V  V  D  D  E  *  S  A  S  T  D  F  *  G   : G  C  I  F  N  W  Y  Q  R  S  N  F  S  G  P  G  F  A  Q  *  R  S  L  Y  *  V  G  D  C  *  D  G  S  E  G  F  N  F  N  H  *  V  E  H  N  V  C  T  C  F  Q   : G  Q  Y  N  R  H  C  G  L  W  R  *  F  C  G  C  C  C  I  W  I  H  T  *  L  A  L  E  L  Y  I  N  P  C  K  C  S  G  C  C  N  C  Y  G  V  W  C  W  *  K  C  C  Q  F  G  E  G  P  G  T  I  E  G  I  K  F  K  R  G  *  E  V  L  G  *  S  T  E  *  *  C  E  L  P  R  C  N  F  T  V  K  N  G  C  K  W  *  *  S  G  K  P  C  L  P  T  K  G  G  I  R  S  A  A  Q  A  *  I  C  A  K  D  D  W  L  L  Q  I  D  D  A  V  F  L  G  Q  I  N  F  V  V  V  T  I  I  L  I  D  C  C  I  F  T  P  *  K  E  M  H  E  L  Q  V  L  *  L  A  D  Y  E  V  H  S  C  I  R  A  A  T  L  L  V  V  E  P  T  V  L  L  I  E  *  E  V  S  R  Y  Y  S  *  S  A  C  M  H  A  R  G  I  G  R  *  I  E  R  *  C  L  R  E  I  A  *  S  S  C  L  *  F  L  I  F  S  T  C  T  H  E  K  L  C  L  A  S  C  N  L  I  L  T  S  N  I  Q  K  K  T  W  A  I  C  F  T  M  E  A  I  *  P  Y  I  S  S  L  G  *  V  E  D  T  N  S  C  L  Q  H  V  H  I  T  I  Y  D  T  N  T  W  A  L </second_frame>
            <third_frame>   L  A  F  P  L  S  R  E  G  L  R  I  F  *  M  H  T  H  A  A  I  S  F  K  P  S  S  S  G  L  F  S  L  N  P  G  I  F  Q  N  P  S  F  V  I  R  P  L  R  N  K  L  R  Y  S  I  L  N  C  R  G  V  E  I  P  F  P  K  L  R  P  S  I  N  S  V  N  N  G  S  T  S  I  A  A  A  V  K  D  V  D  I  A  T  L  G  N  L  C  V  D  I  V  L  N  V  P  E  L  P  P  K  P  L  E  Q  R  K  A  Y  L  E  Q  L  S  K  S  P  P  D  T  :  R  Y  W  E  A  G  G  N  C  N  V  A  I  A  A  A  R  L  G  L  R  C  I  S  V  G  H  V  G  D  E  I  Y  G  R  F  L  I  D  V  L  S  D  E  G  I  S  I  V  G  M  N  E  R  S  E  A  L  N  L  S  S  S  E  N  G  T  L  L  C  W  V  L  V  D  P  S  Q  R  H  G  F  C  S :   R  A  D  F  S  A  D  P  A  F  S  W  M  T  R  L  S  T  E  V  K  M  A  I  R  K  S  K  I  L  F  C  N  G  Y  D  F  D  E  L  S  P  S  L  L  E  S  A  L  E  C  A  V  E  S  G  T  S  I  F  F  D  P  G  P  R  G  R  S  L  I  A  G  R  P  E  E  Q  R  T  I  G  K  L  L  T  M  S  E  V  L  L  L  T  S  E  E  :  A  A  S  L  T  G  I  K  D  P  I  L  A  G  Q  D  L  L  N  N  G  V  C  T  K  W  V  I  V  K  M  G  P  K  G  S  I  L  I  T  K  S  S  I  T  C  A  P  A  F  K  :  V  N  I  I  D  T  V  G  C  G  D  S  F  V  A  A  V  A  F  G  F  I  H  D  L  P  L  S  Y  T  L  T  L  A  N  A  V  G  A  A  T  A  T  G  C  G  A  G  R  N  V  A  S  L  G  K  V  Q  E  L  L  K  E  S  N  L  N  E  D  E  K  F  W  D  E  V  L  N  D  N  V  N  S  R  D  V  T  L  L  S  K  M  V  V  N  G  N  S  Q  V  N  R  V  S  L  Q  K  V  V  S  E  V  L  P  K  L  E  F  A  P  K  M  T  G  S  F  K  *  T  M  Q  F  F  W  D  K  *  I  L  L  L  L  P  S  F  *  L  I  V  A  Y  S  P  L  K  K  K  C  M  S  C  R  C  S  S  L  R  I  M  K  C  T  V  V  L  G  L  L  P  C  W  W  S  N  R  Q  F  C  *  *  S  K  R  C  P  D  T  I  H  D  L  L  A  C  M  R  E  G  L  A  D  R  L  S  V  S  V  *  E  K  L  H  D  Q  V  A  C  D  S  *  F  F  L  R  A  H  M  R  S  C  A  L  L  L  V  I  *  F  L  H  L  T  Y  R  R  K  H  G  Q  S  V  L  Q  W  K  P  Y  S  H  T  F  L  V  *  D  E  *  K  T  P  I  H  V  C  N  T  S  I  L  P  F  M  I  Q  I  L  G  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0085A10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9628" stop="9978"/>
                    <exon start="11566" stop="11816"/>
                    <exon start="11973" stop="12264"/>
                    <exon start="14533" stop="14685"/>
                    <exon start="15343" stop="15726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1428</number_coding_nucleotides>
                  <number_encoded_amino_acids>476</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MHTHAAISFKPSSSGLFSLNPGIFQNPSFVIRPLRNKLRYSILNCRGVEIPFPKLRPSINSVNNGSTSIAAAVKDVDIATLGNLCVDIVLNVPELPPKPLEQRKAYLEQLSKSPPDTRYWEAGGNCNVAIAAARLGLRCISVGHVGDEIYGRFLIDVLSDEGISIVGMNERSEALNLSSSENGTLLCWVLVDPSQRHGFCSRADFSADPAFSWMTRLSTEVKMAIRKSKILFCNGYDFDELSPSLLESALECAVESGTSIFFDPGPRGRSLIAGRPEEQRTIGKLLTMSEVLLLTSEEAASLTGIKDPILAGQDLLNNGVCTKWVIVKMGPKGSILITKSSITCAPAFKVNIIDTVGCGDSFVAAVAFGFIHDLPLSYTLTLANAVGAATATGCGAGRNVASLGKVQELLKESNLNEDEKFWDEVLNDNVNSRDVTLLSKMVVNGNSQVNRVSLQKVVSEVLPKLEFAPKMTGSFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16262" PGL_stop="15335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16262" e_stop="15335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="16262" e_stop="15335" e_length="928"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16262" stop="15335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553506" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAACGGGAAGGGACACACAAAATGAGTGCCCAAGTATTTGTATCATAAATGGTAATATGGACGTGTTGCAAACATGAATTGGTGTCTTCTACTCATCCTAAACTAGAAATGTATGGCTATATGGCTTCCATTGTAAAACAGATTGCCCATGTTTTCTTCTGTATGTTAGATGTAAGAATCAAATTACAAGAAGCAAGGCACAGCTTCTCATGTGTGCACGTAGAAAAAATCAGGAATCACAAGCAACTTGATCATGCAATTTCTCTCAAACACTAACGCTCAATCTATCTGCCAATCCCTCTCGCATGCATGCAAGCAGATCATGAATAGTATCTGGACACCTCTTACTCTATCAACAAAACTGTCGGTTCGACCACCAGCAAGGTAGCAGCCCTAATACAACTGTGCACTTCATAATCCGCAAGCTAGAGCACCTGCAACTCATGCATTTCTTTTTAAGGGGTGAATATGCAACAATCAATCAGAATGATGGTAACAACAACAAAATTTATTTGTCCCAGAAAAACTGCATCGTCTATTTGAAGGAGCCAGTCATCTTTGGCGCAAATTCAAGCTTGGGCAGCACTTCGGATACCACCTTTTGTAGGGAGACACGGTTTACCTGACTATTACCATTTACAACCATTTTTGACAGTAAAGTTACATCTCGGGAGTTCACATTATCATTCAGTACTTCATCCCAAAACTTCTCATCCTCGTTTAAATTTGATTCCTTCAATAGTTCCTGGACCTTCCCCAAACTGGCAACATTTCTACCAGCACCACACCCCGTAGCAGTTGCAGCACCCACTGCATTTGCAAGGGTTAATGTATAACTCAAGGGCAAGTCATGTATGAATCCAAATGCAACAGCAGCCACAAAACTATCTCCACAGCCCACAGTGTCTATTATATTGACCTGTTACA</gDNA_template>
            <first_frame> I  T  G  R  D  T  Q  N  E  C  P  S  I  C  I  I  N  G  N  M  D  V  L  Q  T  *  I  G  V  F  Y  S  S  *  T  R  N  V  W  L  Y  G  F  H  C  K  T  D  C  P  C  F  L  L  Y  V  R  C  K  N  Q  I  T  R  S  K  A  Q  L  L  M  C  A  R  R  K  N  Q  E  S  Q  A  T  *  S  C  N  F  S  Q  T  L  T  L  N  L  S  A  N  P  S  R  M  H  A  S  R  S  *  I  V  S  G  H  L  L  L  Y  Q  Q  N  C  R  F  D  H  Q  Q  G  S  S  P  N  T  T  V  H  F  I  I  R  K  L  E  H  L  Q  L  M  H  F  F  L  R  G  E  Y  A  T  I  N  Q  N  D  G  N  N  N  K  I  Y  L  S  Q  K  N  C  I  V  Y  L  K  E  P  V  I  F  G  A  N  S  S  L  G  S  T  S  D  T  T  F  C  R  E  T  R  F  T  *  L  L  P  F  T  T  I  F  D  S  K  V  T  S  R  E  F  T  L  S  F  S  T  S  S  Q  N  F  S  S  S  F  K  F  D  S  F  N  S  S  W  T  F  P  K  L  A  T  F  L  P  A  P  H  P  V  A  V  A  A  P  T  A  F  A  R  V  N  V  *  L  K  G  K  S  C  M  N  P  N  A  T  A  A  T  K  L  S  P  Q  P  T  V  S  I  I  L  T  C  Y  </first_frame>
            <second_frame>  *  R  E  G  T  H  K  M  S  A  Q  V  F  V  S  *  M  V  I  W  T  C  C  K  H  E  L  V  S  S  T  H  P  K  L  E  M  Y  G  Y  M  A  S  I  V  K  Q  I  A  H  V  F  F  C  M  L  D  V  R  I  K  L  Q  E  A  R  H  S  F  S  C  V  H  V  E  K  I  R  N  H  K  Q  L  D  H  A  I  S  L  K  H  *  R  S  I  Y  L  P  I  P  L  A  C  M  Q  A  D  H  E  *  Y  L  D  T  S  Y  S  I  N  K  T  V  G  S  T  T  S  K  V  A  A  L  I  Q  L  C  T  S  *  S  A  S  *  S  T  C  N  S  C  I  S  F  *  G  V  N  M  Q  Q  S  I  R  M  M  V  T  T  T  K  F  I  C  P  R  K  T  A  S  S  I  *  R  S  Q  S  S  L  A  Q  I  Q  A  W  A  A  L  R  I  P  P  F  V  G  R  H  G  L  P  D  Y  Y  H  L  Q  P  F  L  T  V  K  L  H  L  G  S  S  H  Y  H  S  V  L  H  P  K  T  S  H  P  R  L  N  L  I  P  S  I  V  P  G  P  S  P  N  W  Q  H  F  Y  Q  H  H  T  P  *  Q  L  Q  H  P  L  H  L  Q  G  L  M  Y  N  S  R  A  S  H  V  *  I  Q  M  Q  Q  Q  P  Q  N  Y  L  H  S  P  Q  C  L  L  Y  *  P  V  T </second_frame>
            <third_frame>   N  G  K  G  H  T  K  *  V  P  K  Y  L  Y  H  K  W  *  Y  G  R  V  A  N  M  N  W  C  L  L  L  I  L  N  *  K  C  M  A  I  W  L  P  L  *  N  R  L  P  M  F  S  S  V  C  *  M  *  E  S  N  Y  K  K  Q  G  T  A  S  H  V  C  T  *  K  K  S  G  I  T  S  N  L  I  M  Q  F  L  S  N  T  N  A  Q  S  I  C  Q  S  L  S  H  A  C  K  Q  I  M  N  S  I  W  T  P  L  T  L  S  T  K  L  S  V  R  P  P  A  R  *  Q  P  *  Y  N  C  A  L  H  N  P  Q  A  R  A  P  A  T  H  A  F  L  F  K  G  *  I  C  N  N  Q  S  E  *  W  *  Q  Q  Q  N  L  F  V  P  E  K  L  H  R  L  F  E  G  A  S  H  L  W  R  K  F  K  L  G  Q  H  F  G  Y  H  L  L  *  G  D  T  V  Y  L  T  I  T  I  Y  N  H  F  *  Q  *  S  Y  I  S  G  V  H  I  I  I  Q  Y  F  I  P  K  L  L  I  L  V  *  I  *  F  L  Q  *  F  L  D  L  P  Q  T  G  N  I  S  T  S  T  T  P  R  S  S  C  S  T  H  C  I  C  K  G  *  C  I  T  Q  G  Q  V  M  Y  E  S  K  C  N  S  S  H  K  T  I  S  T  A  H  S  V  Y  Y  I  D  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0085A10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15935" stop="15636"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVSGHLLLYQQNCRFDHQQGSSPNTTVHFIIRKLEHLQLMHFFLRGEYATINQNDGNNNKIYLSQKNCIVYLKEPVIFGANSSLGSTSDTTFCRETRFT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0085A10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15718" stop="15467"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSQSSLAQIQAWAALRIPPFVGRHGLPDYYHLQPFLTVKLHLGSSHYHSVLHPKTSHPRLNLIPSIVPGPSPNWQHFYQHHTP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0085A10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16213" stop="15986"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVIWTCCKHELVSSTHPKLEMYGYMASIVKQIAHVFFCMLDVRIKLQEARHSFSCVHVEKIRNHKQLDHAISLKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0085A10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15635" stop="15426"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLPFTTIFDSKVTSREFTLSFSTSSQNFSSSFKFDSFNSSWTFPKLATFLPAPHPVAVAAPTAFARVNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26435" PGL_stop="25261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26435" e_stop="26375"/>
            <exon e_start="25526" e_stop="25261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.902"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="26435" e_stop="26375" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26374" i_stop="25527" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25526" e_stop="25261" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26435" stop="26375"/>
              <exon start="25526" stop="25261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCTCTTGTACACAGTTCGCACTCAAATCTCTTTCTTCGATTGCGCAAACTTTCAGTCTCT : GAAATGGCTGATGAAAATTTTGAGCAGCCTGAGATGGGTAACTTGCATGACACAGAAAACCTGGATAATATGAATAATGTTCAAGACAATGATAATGTGAATGGCAAGGATAACGTGCACGATGCTAATCACGTGCACGATGCTGATCACGTGCACGATGCTGATGATGTGCATAACATGAATAATATTCATGACTCAGAAGCCATTCCTGCTTTGATTAATGCACCTGAGGAGACACATCATTCTGAAGAGGATAAAGTTACTCC</gDNA_template>
            <first_frame> R  S  C  T  Q  F  A  L  K  S  L  S  S  I  A  Q  T  F  S  L   : *  N  G  *  *  K  F  *  A  A  *  D  G  *  L  A  *  H  R  K  P  G  *  Y  E  *  C  S  R  Q  *  *  C  E  W  Q  G  *  R  A  R  C  *  S  R  A  R  C  *  S  R  A  R  C  *  *  C  A  *  H  E  *  Y  S  *  L  R  S  H  S  C  F  D  *  C  T  *  G  D  T  S  F  *  R  G  *  S  Y  S </first_frame>
            <second_frame>  A  L  V  H  S  S  H  S  N  L  F  L  R  L  R  K  L  S  V  S  :  E  M  A  D  E  N  F  E  Q  P  E  M  G  N  L  H  D  T  E  N  L  D  N  M  N  N  V  Q  D  N  D  N  V  N  G  K  D  N  V  H  D  A  N  H  V  H  D  A  D  H  V  H  D  A  D  D  V  H  N  M  N  N  I  H  D  S  E  A  I  P  A  L  I  N  A  P  E  E  T  H  H  S  E  E  D  K  V  T   </second_frame>
            <third_frame>   L  L  Y  T  V  R  T  Q  I  S  F  F  D  C  A  N  F  Q  S  L :   K  W  L  M  K  I  L  S  S  L  R  W  V  T  C  M  T  Q  K  T  W  I  I  *  I  M  F  K  T  M  I  M  *  M  A  R  I  T  C  T  M  L  I  T  C  T  M  L  I  T  C  T  M  L  M  M  C  I  T  *  I  I  F  M  T  Q  K  P  F  L  L  *  L  M  H  L  R  R  H  I  I  L  K  R  I  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0085A10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26434" stop="26375"/>
                    <exon start="25526" stop="25263"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALVHSSHSNLFLRLRKLSVSEMADENFEQPEMGNLHDTENLDNMNNVQDNDNVNGKDNVHDANHVHDADHVHDADDVHNMNNIHDSEAIPALINAPEETHHSEEDKVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="65998" PGL_stop="64614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65998" e_stop="65677"/>
            <exon e_start="65566" e_stop="64614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65998" e_stop="65677" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65676" i_stop="65567" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="65566" e_stop="64614" e_length="953"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65998" stop="65677"/>
              <exon start="65566" stop="65105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65982" stop="65677"/>
              <exon start="65566" stop="65058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65982" stop="65677"/>
              <exon start="65566" stop="65082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65975" stop="65677"/>
              <exon start="65566" stop="65058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65974" stop="65677"/>
              <exon start="65566" stop="65071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65974" stop="65677"/>
              <exon start="65566" stop="65083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65974" stop="65677"/>
              <exon start="65566" stop="65088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65974" stop="65677"/>
              <exon start="65566" stop="65328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65973" stop="65677"/>
              <exon start="65566" stop="65194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65973" stop="65677"/>
              <exon start="65566" stop="65304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65973" stop="65677"/>
              <exon start="65566" stop="65344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65973" stop="65677"/>
              <exon start="65566" stop="65443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65973" stop="65677"/>
              <exon start="65566" stop="65505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65972" stop="65677"/>
              <exon start="65566" stop="64964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65972" stop="65677"/>
              <exon start="65566" stop="65050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65972" stop="65677"/>
              <exon start="65566" stop="65283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65972" stop="65677"/>
              <exon start="65566" stop="65339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65971" stop="65677"/>
              <exon start="65566" stop="64999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65970" stop="65677"/>
              <exon start="65566" stop="64955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65970" stop="65677"/>
              <exon start="65566" stop="64965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65970" stop="65677"/>
              <exon start="65566" stop="64973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65970" stop="65677"/>
              <exon start="65566" stop="65015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65970" stop="65677"/>
              <exon start="65566" stop="65325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65967" stop="65677"/>
              <exon start="65566" stop="65017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65967" stop="65677"/>
              <exon start="65566" stop="65050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65967" stop="65677"/>
              <exon start="65566" stop="65177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65966" stop="65677"/>
              <exon start="65566" stop="65123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65966" stop="65677"/>
              <exon start="65566" stop="65193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65966" stop="65677"/>
              <exon start="65566" stop="65344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65966" stop="65677"/>
              <exon start="65566" stop="65349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65966" stop="65677"/>
              <exon start="65566" stop="65354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65966" stop="65677"/>
              <exon start="65566" stop="65355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65963" stop="65677"/>
              <exon start="65566" stop="64999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65963" stop="65677"/>
              <exon start="65566" stop="65051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65963" stop="65677"/>
              <exon start="65566" stop="65055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65963" stop="65677"/>
              <exon start="65566" stop="65059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65963" stop="65677"/>
              <exon start="65566" stop="65088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65963" stop="65677"/>
              <exon start="65566" stop="65157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65963" stop="65677"/>
              <exon start="65566" stop="65303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65962" stop="65677"/>
              <exon start="65566" stop="65157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65962" stop="65677"/>
              <exon start="65566" stop="65283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65962" stop="65677"/>
              <exon start="65566" stop="65405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65961" stop="65677"/>
              <exon start="65566" stop="65066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65961" stop="65677"/>
              <exon start="65566" stop="65130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65958" stop="65677"/>
              <exon start="65566" stop="65050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65952" stop="65677"/>
              <exon start="65566" stop="65352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65951" stop="65677"/>
              <exon start="65566" stop="65083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65948" stop="65677"/>
              <exon start="65566" stop="64965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65940" stop="65677"/>
              <exon start="65566" stop="65195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65920" stop="65677"/>
              <exon start="65566" stop="65113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65899" stop="65677"/>
              <exon start="65566" stop="64963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65892" stop="65677"/>
              <exon start="65566" stop="65051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65874" stop="65677"/>
              <exon start="65566" stop="65054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65856" stop="65677"/>
              <exon start="65566" stop="65021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65387" stop="64785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65369" stop="64614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65287" stop="64657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65282" stop="64657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65168" stop="64768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65163" stop="64635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65154" stop="64765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65149" stop="64635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65128" stop="64768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65125" stop="64629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266848" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65098" stop="64769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65067" stop="64635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65005" stop="64629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366502" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64969" stop="64635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64936" stop="64629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240549" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCTGGATTATTCACATCAAAGAGAGAAATCTCAGTAGAATCTACACAAGCAGATCCAATTCTCTTCTCCATTTCTGCCTCCTTTCTTCCTAGCCCTAGTTCTCTCCCTATTTGGGAATTTCATTTCTTCGCTTTGAAATGGCCACTGAAGAACCAGTCATCGTTAACGAGGTTGTTGAAGAGCAAGCCGCTCCTGAAACTGTCAAGGATGAGGCAAACCCTCCGGCCAAGTCTGGAAAAGCAAAAAAAGAGACCAAGGCGAAGAAGCCTGCTGCACCAAGGAAGAGAAGCGCTACTCCGACTCATCCTCCTTACTTTGAG : ATGATTAAGGATGCGATTGTGACATTGAAAGAGAGAACTGGATCCAGCCAGCACGCTATTACCAAGTTCATTGAGGAAAAGCAGAAGAGTCTACCATCTAATTTCAAAAAATTGTTGCTTACCCAGTTGAAGAAGTTTGTTGCTTCTGAGAAGCTGGTGAAAGTTAAGAACTCTTACAAGCTTCCATCAGGTTCTAAGCCTGCTGCTGCTGCTGTCCCGGCGAAGAAGAAGCCTGCTGCAGCAAAGTCAAAGCCTGCTGCGAAACCAAAAGCCGCCGTCAAGCCCAAGGCAAAGCCCGCTGCCAAGGCAAAACCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCAAAGCCCGCTGCCAAGGCCAAGCCCGCTGCCAAGGCCAAGCCTGCTGCCAAGGCAAAGCCCGTTGCTAAGGCTAAGCCCAAAGCAGCGGCTGCTGCCAAGCCCAAAGCTGCTGTTAAACCTAAGGCTGCTCCTGCCAAAACCAAGGCTGCGGTCAAGCCAAATCTGAAGGCTAAGACGACGACAGCTAAGGTTGCAAAAACCGCTACGAGAACGACTCCAAGTCGGAAAGCTGCACCAAAGGCAACACCTGCCAAAAAGGAGCCGGTTAAGAAGGCACCTGCGAAGAATGTGAAGTCTCCGGCGAAGAAGGCTACCCCAAAGAGGGGAAGGAAGTAGAAACACAGGAATAGAGGATTTGTGTGTAGGGATAGTCCTGTAAATTCCCTGAATCTTTGGTTGATTTGGGTGTTTTGCCCATGGGAAGCTATAGAAATCTGGTTTATTTTCTCTTTTCTTAGCCTTGTCCTACAGTGTTTAGATTTTTTTTTTCTCTTTTTAATTCCGTTTAGGGATATGGAACAGTTCTTCTCTGTACTGATATATCACTCTGCTTATGAGAATTAGAGTATGATGCCCTTACCTTATAAATGTCCATTTCTATTCAGCCA</gDNA_template>
            <first_frame> S  L  D  Y  S  H  Q  R  E  K  S  Q  *  N  L  H  K  Q  I  Q  F  S  S  P  F  L  P  P  F  F  L  A  L  V  L  S  L  F  G  N  F  I  S  S  L  *  N  G  H  *  R  T  S  H  R  *  R  G  C  *  R  A  S  R  S  *  N  C  Q  G  *  G  K  P  S  G  Q  V  W  K  S  K  K  R  D  Q  G  E  E  A  C  C  T  K  E  E  K  R  Y  S  D  S  S  S  L  L  *   : D  D  *  G  C  D  C  D  I  E  R  E  N  W  I  Q  P  A  R  Y  Y  Q  V  H  *  G  K  A  E  E  S  T  I  *  F  Q  K  I  V  A  Y  P  V  E  E  V  C  C  F  *  E  A  G  E  S  *  E  L  L  Q  A  S  I  R  F  *  A  C  C  C  C  C  P  G  E  E  E  A  C  C  S  K  V  K  A  C  C  E  T  K  S  R  R  Q  A  Q  G  K  A  R  C  Q  G  K  T  R  C  Q  G  K  A  R  C  Q  G  K  A  R  C  Q  G  Q  A  R  C  Q  G  Q  A  C  C  Q  G  K  A  R  C  *  G  *  A  Q  S  S  G  C  C  Q  A  Q  S  C  C  *  T  *  G  C  S  C  Q  N  Q  G  C  G  Q  A  K  S  E  G  *  D  D  D  S  *  G  C  K  N  R  Y  E  N  D  S  K  S  E  S  C  T  K  G  N  T  C  Q  K  G  A  G  *  E  G  T  C  E  E  C  E  V  S  G  E  E  G  Y  P  K  E  G  K  E  V  E  T  Q  E  *  R  I  C  V  *  G  *  S  C  K  F  P  E  S  L  V  D  L  G  V  L  P  M  G  S  Y  R  N  L  V  Y  F  L  F  S  *  P  C  P  T  V  F  R  F  F  F  S  L  F  N  S  V  *  G  Y  G  T  V  L  L  C  T  D  I  S  L  C  L  *  E  L  E  Y  D  A  L  T  L  *  M  S  I  S  I  Q  P </first_frame>
            <second_frame>  P  W  I  I  H  I  K  E  R  N  L  S  R  I  Y  T  S  R  S  N  S  L  L  H  F  C  L  L  S  S  *  P  *  F  S  P  Y  L  G  I  S  F  L  R  F  E  M  A  T  E  E  P  V  I  V  N  E  V  V  E  E  Q  A  A  P  E  T  V  K  D  E  A  N  P  P  A  K  S  G  K  A  K  K  E  T  K  A  K  K  P  A  A  P  R  K  R  S  A  T  P  T  H  P  P  Y  F  E  :  M  I  K  D  A  I  V  T  L  K  E  R  T  G  S  S  Q  H  A  I  T  K  F  I  E  E  K  Q  K  S  L  P  S  N  F  K  K  L  L  L  T  Q  L  K  K  F  V  A  S  E  K  L  V  K  V  K  N  S  Y  K  L  P  S  G  S  K  P  A  A  A  A  V  P  A  K  K  K  P  A  A  A  K  S  K  P  A  A  K  P  K  A  A  V  K  P  K  A  K  P  A  A  K  A  K  P  A  A  K  A  K  P  A  A  K  A  K  P  A  A  K  A  K  P  A  A  K  A  K  P  A  A  K  A  K  P  V  A  K  A  K  P  K  A  A  A  A  A  K  P  K  A  A  V  K  P  K  A  A  P  A  K  T  K  A  A  V  K  P  N  L  K  A  K  T  T  T  A  K  V  A  K  T  A  T  R  T  T  P  S  R  K  A  A  P  K  A  T  P  A  K  K  E  P  V  K  K  A  P  A  K  N  V  K  S  P  A  K  K  A  T  P  K  R  G  R  K  *  K  H  R  N  R  G  F  V  C  R  D  S  P  V  N  S  L  N  L  W  L  I  W  V  F  C  P  W  E  A  I  E  I  W  F  I  F  S  F  L  S  L  V  L  Q  C  L  D  F  F  F  L  F  L  I  P  F  R  D  M  E  Q  F  F  S  V  L  I  Y  H  S  A  Y  E  N  *  S  M  M  P  L  P  Y  K  C  P  F  L  F  S   </second_frame>
            <third_frame>   P  G  L  F  T  S  K  R  E  I  S  V  E  S  T  Q  A  D  P  I  L  F  S  I  S  A  S  F  L  P  S  P  S  S  L  P  I  W  E  F  H  F  F  A  L  K  W  P  L  K  N  Q  S  S  L  T  R  L  L  K  S  K  P  L  L  K  L  S  R  M  R  Q  T  L  R  P  S  L  E  K  Q  K  K  R  P  R  R  R  S  L  L  H  Q  G  R  E  A  L  L  R  L  I  L  L  T  L  R :   *  L  R  M  R  L  *  H  *  K  R  E  L  D  P  A  S  T  L  L  P  S  S  L  R  K  S  R  R  V  Y  H  L  I  S  K  N  C  C  L  P  S  *  R  S  L  L  L  L  R  S  W  *  K  L  R  T  L  T  S  F  H  Q  V  L  S  L  L  L  L  L  S  R  R  R  R  S  L  L  Q  Q  S  Q  S  L  L  R  N  Q  K  P  P  S  S  P  R  Q  S  P  L  P  R  Q  N  P  L  P  R  Q  S  P  L  P  R  Q  S  P  L  P  R  P  S  P  L  P  R  P  S  L  L  P  R  Q  S  P  L  L  R  L  S  P  K  Q  R  L  L  P  S  P  K  L  L  L  N  L  R  L  L  L  P  K  P  R  L  R  S  S  Q  I  *  R  L  R  R  R  Q  L  R  L  Q  K  P  L  R  E  R  L  Q  V  G  K  L  H  Q  R  Q  H  L  P  K  R  S  R  L  R  R  H  L  R  R  M  *  S  L  R  R  R  R  L  P  Q  R  G  E  G  S  R  N  T  G  I  E  D  L  C  V  G  I  V  L  *  I  P  *  I  F  G  *  F  G  C  F  A  H  G  K  L  *  K  S  G  L  F  S  L  F  L  A  L  S  Y  S  V  *  I  F  F  F  S  F  *  F  R  L  G  I  W  N  S  S  S  L  Y  *  Y  I  T  L  L  M  R  I  R  V  *  C  P  Y  L  I  N  V  H  F  Y  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0085A10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65898" stop="65677"/>
                    <exon start="65566" stop="64886"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSPYLGISFLRFEMATEEPVIVNEVVEEQAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYKLPSGSKPAAAAVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTTTAKVAKTATRTTPSRKAAPKATPAKKEPVKKAPAKNVKSPAKKATPKRGRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0085A10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64885" stop="64658"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHRNRGFVCRDSPVNSLNLWLIWVFCPWEAIEIWFIFSFLSLVLQCLDFFFLFLIPFRDMEQFFSVLIYHSAYEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="64617" PGL_stop="65679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64617" e_stop="64641"/>
            <exon e_start="64975" e_stop="65121"/>
            <exon e_start="65236" e_stop="65679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64617" e_stop="64641" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64642" i_stop="64974" i_length="333"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64975" e_stop="65121" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65122" i_stop="65235" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="65236" e_stop="65679" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64617" stop="64641"/>
              <exon start="64975" stop="65121"/>
              <exon start="65236" stop="65679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAATAGAAATGGACATTTATAAG : GTGTTGCCTTTGGTGCAGCTTTCCGACTTGGAGTCGTTCTCGTAGCGGTTTTTGCAACCTTAGCTGTCGTCGTCTTAGCCTTCAGATTTGGCTTGACCGCAGCCTTGGTTTTGGCAGGAGCAGCCTTAGGTTTAACAGCAGCTTTGG : GCTTTGCCTTGGCAGCGGGTTTTGCCTTGGCAGCGGGCTTTGCCTTGGGCTTGACGGCGGCTTTTGGTTTCGCAGCAGGCTTTGACTTTGCTGCAGCAGGCTTCTTCTTCGCCGGGACAGCAGCAGCAGCAGGCTTAGAACCTGATGGAAGCTTGTAAGAGTTCTTAACTTTCACCAGCTTCTCAGAAGCAACAAACTTCTTCAACTGGGTAAGCAACAATTTTTTGAAATTAGATGGTAGACTCTTCTGCTTTTCCTCAATGAACTTGGTAATAGCGTGCTGGCTGGATCCAGTTCTCTCTTTCAATGTCACAATCGCATCCTTAATCATCTGCACGATACAATCCAATATCAACTTCAATACACATTCAACAAAGCACAAAAGAATTATATAATCAAGTATAATTCAAACACAAAACTGAAAATTCAATTTTCAATTACCTC</gDNA_template>
            <first_frame> L  N  R  N  G  H  L  *   : G  V  A  F  G  A  A  F  R  L  G  V  V  L  V  A  V  F  A  T  L  A  V  V  V  L  A  F  R  F  G  L  T  A  A  L  V  L  A  G  A  A  L  G  L  T  A  A  L   : G  F  A  L  A  A  G  F  A  L  A  A  G  F  A  L  G  L  T  A  A  F  G  F  A  A  G  F  D  F  A  A  A  G  F  F  F  A  G  T  A  A  A  A  G  L  E  P  D  G  S  L  *  E  F  L  T  F  T  S  F  S  E  A  T  N  F  F  N  W  V  S  N  N  F  L  K  L  D  G  R  L  F  C  F  S  S  M  N  L  V  I  A  C  W  L  D  P  V  L  S  F  N  V  T  I  A  S  L  I  I  C  T  I  Q  S  N  I  N  F  N  T  H  S  T  K  H  K  R  I  I  *  S  S  I  I  Q  T  Q  N  *  K  F  N  F  Q  L  P  </first_frame>
            <second_frame>  *  I  E  M  D  I  Y  K  :  V  L  P  L  V  Q  L  S  D  L  E  S  F  S  *  R  F  L  Q  P  *  L  S  S  S  *  P  S  D  L  A  *  P  Q  P  W  F  W  Q  E  Q  P  *  V  *  Q  Q  L  W  :  A  L  P  W  Q  R  V  L  P  W  Q  R  A  L  P  W  A  *  R  R  L  L  V  S  Q  Q  A  L  T  L  L  Q  Q  A  S  S  S  P  G  Q  Q  Q  Q  Q  A  *  N  L  M  E  A  C  K  S  S  *  L  S  P  A  S  Q  K  Q  Q  T  S  S  T  G  *  A  T  I  F  *  N  *  M  V  D  S  S  A  F  P  Q  *  T  W  *  *  R  A  G  W  I  Q  F  S  L  S  M  S  Q  S  H  P  *  S  S  A  R  Y  N  P  I  S  T  S  I  H  I  Q  Q  S  T  K  E  L  Y  N  Q  V  *  F  K  H  K  T  E  N  S  I  F  N  Y  L </second_frame>
            <third_frame>   E  *  K  W  T  F  I  R :   C  C  L  W  C  S  F  P  T  W  S  R  S  R  S  G  F  C  N  L  S  C  R  R  L  S  L  Q  I  W  L  D  R  S  L  G  F  G  R  S  S  L  R  F  N  S  S  F  G :   L  C  L  G  S  G  F  C  L  G  S  G  L  C  L  G  L  D  G  G  F  W  F  R  S  R  L  *  L  C  C  S  R  L  L  L  R  R  D  S  S  S  S  R  L  R  T  *  W  K  L  V  R  V  L  N  F  H  Q  L  L  R  S  N  K  L  L  Q  L  G  K  Q  Q  F  F  E  I  R  W  *  T  L  L  L  F  L  N  E  L  G  N  S  V  L  A  G  S  S  S  L  F  Q  C  H  N  R  I  L  N  H  L  H  D  T  I  Q  Y  Q  L  Q  Y  T  F  N  K  A  Q  K  N  Y  I  I  K  Y  N  S  N  T  K  L  K  I  Q  F  S  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0085A10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64641" stop="65121"/>
                    <exon start="65236" stop="65393"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVAFGAAFRLGVVLVAVFATLAVVVLAFRFGLTAALVLAGAALGLTAALGFALAAGFALAAGFALGLTAAFGFAAGFDFAAAGFFFAGTAAAAGLEPDGSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0085A10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64625" stop="64641"/>
                    <exon start="64975" stop="65121"/>
                    <exon start="65236" stop="65320"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWTFIRCCLWCSFPTWSRSRSGFCNLSCRRLSLQIWLDRSLGFGRSSLRFNSSFGLCLGSGFCLGSGLCLGLDGGFWFRSRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0085A10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65394" stop="65630"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFLTFTSFSEATNFFNWVSNNFLKLDGRLFCFSSMNLVIACWLDPVLSFNVTIASLIICTIQSNINFNTHSTKHKRII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 128 chains have been computed
$ 
$ memory statistics:
$ 166328 bytes spliced alignments in total
$ 79 spliced alignments have been stored
$ 2105 bytes was the average size of a spliced alignment
$ 11512 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2302 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 147 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 12:51:22
-->
