<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 12:42:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269922" ref_strand="+" ref_description="SGN-E269922 [cLEM-7-E19]">
      <seq>gatgcacgagttttctcagagtactttggtggtgcaaaagctgtgtcatgttcagggacggcagtttcctgtcgatatattctacacccataagcctgagacagattgcatagatgcagctttgattactatatttcagatacatctagaggagggacctggtgatgtgcttgtattccttactggtcaagaggagattgaatccgttgagaggcttatccatgaacgtctccgacaattacccgaatgcagtaggaaactcttaacttttcccatattctcatcacttccctctgagaagcaaatgagggttttcatgccttcaccagctggatatcgtaaggtgatactagcaacaaatattgctgagacgtcagtgacaatacctggtattaggtatgttgtggatcctggactggtgaaagcccgaacatatgatcctaagatgggagttgattcattgatcattgtcacaacatctaaagctcaagctcttcaaaggagtggacgtgcaagacgtgatggacctgggaaatgctatcgtttatatcaagaaagtttctttgagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="16755" stop="19995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17055" g_stop="17192" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17193" i_stop="17469" i_length="277">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17470" g_stop="17673" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="343" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17674" i_stop="18746" i_length="1073">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18747" g_stop="18907" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="504" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18908" i_stop="19627" i_length="720">
            <donor d_prob="0.631" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19628" g_stop="19695" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="572" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E269922" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17055" e_stop="17192"/>
          <exon e_start="17470" e_stop="17673"/>
          <exon e_start="18747" e_stop="18907"/>
          <exon e_start="19628" e_stop="19695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCACGAGTTTTCTCAGAGTACTTTGGTGGTGCAAAAGCTGT-TCATGTTCAGGGACGGCAGTTTCCTGTCGATATATTCTACACCCATAAGCCTGAGACAGATTGCATAGATGCAGCTTTGATTACTATATTTCAGGTTTTTACATTTATCTTGTTGCTTCACAAATAAGAGTTTGAACTGATCGACAGTGTCATTAAATTTTCACAAAAGCACAGCAGCTTTGTGCCTTTGTTGTTGCTTTCTCATAGTATATTATTTATCAGCTCCTAGATGGATTTGTTACTATATTGGCCTTTTACATAACTAAGTTTAATGTTTCAAGTAGCATTGAGGGTTCGATTAGTCAAGTTTATAGTTTGTGATGTTGTTGAATGTCTTATGTTCTGTTCATTCCTCCAACTTGTTTTGCTAGATACATCTAGAGGAGGGACCTGGTGATGTGCTTGTATTCCTTACTGGTCAAGAGGAGATTGAATCCGTTGAGAGGCTTATCCATGAACGTCTCCGACAATTACCCGAATGCAGTAGGAAACTCTTAACTTTTCCCATATTCTCATCACTTCCCTCTGAGAAGCAAATGAGGGTTTTCATGCCTTCACCAGCTGGATATCGTAAGGTTGATTTGTTTCTTTGGATAGCTTATTTTTTGAACTTTTGAGATGGATCATGGATGTACTTACCTTTTGTCTATATCTGGGGTTGCATTTAGGTCTGTGTGTAAAGCATGAATTATATGAACTCCATTGAATTGTTTATAGGATAATATAATAATTGTGTGTGACATCCTTTGTGAAAAAAAAGTTACTCTGAACTTTGAATTCATCTTGCATCATCTGTCTGAAAAAAGACAAAGCTGAGTTGCAGTGTTTTTCAAAGGAATAAGCCACTTGTCAAAATGTTGTGACTACGGAATTGAAATGATTCTTGAAAACTAGGTTAATTCACTTCATTCCATAAAGGAAAACAAGTTCCATTTCTACCACTTCATGAAACTTTATAGCTCTAATTGATATTCGGCCAGTTGTTTTATGAATTCCTTCCATTACTTTTGCATAACGTAGTACATATGAGTATCATTGTCCTAGAAATATCTGCATTCCACGTAGATGCCATGGTTTGGCTTGTACGGTTATGTTCAGCGGGTGTCACTTTGGTGTGTGGGTATTTCACGTGAATTCTCCAAATACACCACAAAAATTGCAAGTAACCTTCTGAGGTGCCGGATCCTTGCACTTGTATGTCAGTTGGGGATAAACATAAGGTCAATTTATTTTTCTCCAGGGTAGGTGCGTATGGGTGGTTAGTTGTTAGTATGCAATGTTTTCTTTCTTTGGTTGAGCTTATACCGGTGCATCCCTTTGTGTACTAATTTTAGAAACTTCTACCTACACACTAAATATATATGAAATTAATACCTGACCTATAGAAACATTTATTTGGTTATCTTCTCAAGGTAAATAAAGTTTGGTTATGTGCTAGCTTGTAGCCTTGTATTTGTTACAAAGCTTAGCATTGTGAATGTGCATTTTTATTATTTGGCTATGTTTATAATAATGCTAATAAGTTCTTTATCTAGTTTCACTGGTATGCTTGACATGAAGTTTTCAAGGCTTAATATTTGGTAATTGCTCTGAGTTGGCAAGTTATGTCCACTAAAATCAGATTTTAATTCTTTCATTTCATATTTAGGTGATACTAGCAACAAATATTGCTGAGACGTCAGTGACAATACCTGGTATTAGGTATGTTGTGGATCCTGGACTGGTGAAAGCCCGAACATATGATCCTAAGATGGGAGTTGATTCATTGATCATTGTCACAACATCTAAAGCTCAAGCTCTTCAAAGGAGGTAGGGTGCTTCCAGGTGCATTTAAGTCTCAATACACATTGACTAAATCACCTCCTTTCCTCAACTAACTTCATTCAAAGGCATCTTTTGTCCAACTTTTAAAAATTATGGTGGTTTGAACCATAATTTTCTTCTTACTTTGCATTAATCATATTTGACATGTGGGATAGGCTAAGGATATGTACTGGGATGTACTTATGCTTTGAAGTTTTTGTTTTATCTTGGATCTGTATCTGCCACTTAGGTACTAATATACTTCAAAGGGCCAACATAATATTGATGAGATCAACATAGGGAATAGGAGGATTGTAATTGTAAGCATAATATCTTTTCAAAGCAGAGGAATTGTAGAGGAGGATTCTTTTTCTGGTTACAGATAGAAGCTTAAAATTTGAAAATTGCAATCGATAAAAGTAGCGTATTCTTTCCATGTACCTATTATTTGGCGGGCAGAGTTATCCGGTACTTGTATTGGTGGGGAGTAGGAGGTAGCTGGTAGATACTTTAGTTGCGTACAATAAAAATAGAGACAAGGTTAAACTTAAAAAGTCCTGGGTGCAGCCTCTGAAGTAAAATCCATGGGACAATGGTGATCGAGAAGTTGAACCAATGCAGTAGGATTTATATATACAGGAGGGAAATGGATAACAGACATTTACTATTTTGGTTATATTATCTGTTAAATATCAGATCAAGGGCTAATTTCTTGAATTTTTGTAGTGGACGTGCAGGACGTGATGGACCTGGGAAATGCTATCGTTTATATCAAGAAAGTTTCTTTGAGAAAC</genome_strand>
        <mrna_strand>GATGCACGAGTTTTCTCAGAGTACTTTGGTGGTGCAAAAGCTGTGTCATGTTCAGGGACGGCAGTTTCCTGTCGATATATTCTACACCCATAAGCCTGAGACAGATTGCATAGATGCAGCTTTGATTACTATATTTCAG.....................................................................................................................................................................................................................................................................................ATACATCTAGAGGAGGGACCTGGTGATGTGCTTGTATTCCTTACTGGTCAAGAGGAGATTGAATCCGTTGAGAGGCTTATCCATGAACGTCTCCGACAATTACCCGAATGCAGTAGGAAACTCTTAACTTTTCCCATATTCTCATCACTTCCCTCTGAGAAGCAAATGAGGGTTTTCATGCCTTCACCAGCTGGATATCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACTAGCAACAAATATTGCTGAGACGTCAGTGACAATACCTGGTATTAGGTATGTTGTGGATCCTGGACTGGTGAAAGCCCGAACATATGATCCTAAGATGGGAGTTGATTCATTGATCATTGTCACAACATCTAAAGCTCAAGCTCTTCAAAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGTGCAAGACGTGATGGACCTGGGAAATGCTATCGTTTATATCAAGAAAGTTTCTTTGAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553951" ref_strand="+" ref_description="SGN-E553951 [cTSC-2-L7]">
      <seq>gaaatgttgatctgtgttgcaatgctttcagtggaatctattttctatgcaccacgtgaaaagttggaagagtcacgaaacgcattgaaaagctttgcaagtccagagggggatcatctgacattgcttaatgtataccgtgctgctgatgagttctttcaaaagaacaagatggtacacagtgaagaaaaagctgaaaagaatcttagaaaatggtgcaaggataattatattaacagtcgctctctaaaacatgctcgtgatatccacagtcaaattgtgaggaatgttgaacaaatgggtcttcgcgtcacttcttgtgaagatgatacacttctcctccgcagatgccttgctgcctcattttttcttaaagcagctatgaagcagcctgatggtgcatacagggtgacgttaagtggtttgattgtgcaaatacacccgtcttctgtcctgttccgagccaagccagagtgtatagttttcaatgaactggttcatactaaccatagttatgtccgtaatgtctctagaatcgattacttgtggctcgttgagttggcaccccacttgtatgctgtgcaagactaaatgtgttcattatttatatcggtaagagatcccttccttcaacaacaccatatccaaacgacaccatatccaatgttattccacaagtggaacttggggagggtcagatgtacgcagaccttatccccattacctttgtgtgggggctaaagaggtcatcaattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="20317" stop="23123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20617" g_stop="20688" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20689" i_stop="21644" i_length="956">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21645" g_stop="21844" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="272" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21845" i_stop="22221" i_length="377">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22222" g_stop="22356" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="407" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22357" i_stop="22471" i_length="115">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22472" g_stop="22823" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="759" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E553951" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20617" e_stop="20688"/>
          <exon e_start="21645" e_stop="21844"/>
          <exon e_start="22222" e_stop="22356"/>
          <exon e_start="22472" e_stop="22823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGTTGATCTGTGTTGCAATGCTTTCAGTGGAATCTATTTTCTATGCACCACGTGAAAAGTTGGAAGAGGTAGTCCTTTGTGCTAGCTTGTTGTTACCCCCCCCCCCCCATCCCCCCACCTCCCACCCCCCAAAACATGTACATAGGATTGTAGTAAATATTTTCTTTCTATAAGTCCAATGAGTGTCAAACTGTTTTATTGCATCCAGCTCTTAAGATAGCATCGTATACTGAACCTTCCATTTTTAATTAAAAAAACATACTTTTGCTGGACACCATCCGCCTATCTCCCGATCATGAGAAAGCTTCGCTTACAGATAATCATTATGGAGAAAGTTAGGAGATCTTTGGCGAAACACTAGACGGGCCTGAATTTAAAAGCTTTGCAGCTTGTCTGGTGATAAGTAAGCTGTCTTGGTTAGGATCTTCTATGCCCGTCAGTTTCCTGGCCCTTGAAAGTCGTGCATTATAATATTGTCTAGTATGAGATTAGGAGGTCCATTACTTATTTAAAGAGACATAGATCAGTTTCATGCTCCAACATTCAAATATAAATCTTTTCAGTTTACAGGCTTTGAATAAGTTTGTCTAGTTGATGAATAGGGTGTAGAGCTTAAAGCTCGACCCTCTTTTGAATTCGTGAGAGACATTTCCCTTAACTCTTATAATGTTGATTCCGGCGATCGATCGACAAAATTTACCTTCAATATTTTAAATTATCTAACCATTGGAGTAGATAAAAAATTGTTCATGTCGTTTTAGCTGTTCTAGTTTCGTTTTTCTTTAAATTTCAAAATCTGTCTGTTAAGTTCAAGCTAATAGGGTGCCATGAAATGGTGAATGGACTGAAGAAGAATTTTGCGTGCAGTTTTAGCAACTGTTGTCGTCCCGTGTTATTGGCTTTTCTTTTTCCTGTGTTATCTTTCCACTTAGCAGTCACCTTTGACTTTGTTGATGTGTTATACTAATTTTGGCATGTAATATAATTCGAAAACAGTCTGAATAATTTTACCTGTGGTTGTCAGTCACGAAACGCATTGAAAAGCTTTGCAAGTCCAGAGGGGGATCATCTGACATTGCTTAATGTATACCGTGCTGCTGATGAGTTCTTTCAAAAGAACAAGATGGTACACAGTGAAGAAAAAGCTGAAAAGAATCTTAGAAAATGGTGCAAGGATAATTATATTAACAGTCGCTCTCTAAAACATGCTCGTGATATCCACAGGTAGGCATTATGTACTTCAACTTCAAGGAAATATTATTCTGTTCTGCTTTATGATTATTTCTACCTCCACAGTTCTTTTAGAGAAAATGATAAAACACACACATTCACGTTTTTGCCAGTTTTCTTACTTGAACTATCAGGTGTTCACTTTTACTACTGAACTATCACCGACTATTTCTCAAAACACATCTGAAGTATCAGTTGTTCCCTTTTCCTACCGTTCAGTGTTTGACCATTAACTCTTCTTTTTTTATGTGTTACATTCTTATGCTCATGCTCGTCATATTTCACTGTTATATAATGTACTTGCCGCTTCTTCTCATTTGTCCGGGTCCTTGAGTGAGTGAAAAATCTTAAGCTTTCTACCTATGTTTCAGTCAAATTGTGAGGAATGTTGAACAAATGGGTCTTCGCGTCACTTCTTGTGAAGATGATACACTTCTCCTCCGCAGATGCCTTGCTGCCTCATTTTTTCTTAAAGCAGCTATGAAGCAGCCTGATGGTGCATACAGGTTAAGATTAGTGGCTTTATTAGTCCGGCATCAATTAGTGTATCTGTTTGGAGTTCTTTGACATATCATCTATTCGTTCCCATATCTGACATTCATTTTAACTATCTACTGGCAGGGTGACGTTAAGTGGTTTGATTGTGCAAATACACCCGTCTTCTGTCCTGTTCCGAGCCAAGCCAGAGTGTATAGTTTTCAATGAACTGGTTCATACTAACCATAGTTATGTCCGTAATGTCTCTAGAATCGATTACTTGTGGCTCGTTGAGTTGGCACCCCACTTGTATGCTGTGCAAGACTAAATGTGTTCATTATTTATATCGGTAAGAGATCCCTTCCTTCAACAACACCATATCCAAACGACACCATATCCAATGTAATTCCACAAGTGGAACTTGGGGAGGGTCAGATGTACGCAGACCTTATCCCCATTACCTTTGTGTGGGGGCTAAAGAGGTCATCAATTTTGC</genome_strand>
        <mrna_strand>GAAATGTTGATCTGTGTTGCAATGCTTTCAGTGGAATCTATTTTCTATGCACCACGTGAAAAGTTGGAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGAAACGCATTGAAAAGCTTTGCAAGTCCAGAGGGGGATCATCTGACATTGCTTAATGTATACCGTGCTGCTGATGAGTTCTTTCAAAAGAACAAGATGGTACACAGTGAAGAAAAAGCTGAAAAGAATCTTAGAAAATGGTGCAAGGATAATTATATTAACAGTCGCTCTCTAAAACATGCTCGTGATATCCACAG.........................................................................................................................................................................................................................................................................................................................................................................................TCAAATTGTGAGGAATGTTGAACAAATGGGTCTTCGCGTCACTTCTTGTGAAGATGATACACTTCTCCTCCGCAGATGCCTTGCTGCCTCATTTTTTCTTAAAGCAGCTATGAAGCAGCCTGATGGTGCATACAG...................................................................................................................GGTGACGTTAAGTGGTTTGATTGTGCAAATACACCCGTCTTCTGTCCTGTTCCGAGCCAAGCCAGAGTGTATAGTTTTCAATGAACTGGTTCATACTAACCATAGTTATGTCCGTAATGTCTCTAGAATCGATTACTTGTGGCTCGTTGAGTTGGCACCCCACTTGTATGCTGTGCAAGACTAAATGTGTTCATTATTTATATCGGTAAGAGATCCCTTCCTTCAACAACACCATATCCAAACGACACCATATCCAATGTTATTCCACAAGTGGAACTTGGGGAGGGTCAGATGTACGCAGACCTTATCCCCATTACCTTTGTGTGGGGGCTAAAGAGGTCATCAATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554578" ref_strand="+" ref_description="SGN-E554578 [cTSC-4-L7]">
      <seq>gaaatgttgatctgtgttgcaatgctttcagtggaatctattttctatgcaccacgtgaaaagttggaagagtcacgaaacgcattgaaaagctttgcaagtccagagggggatcatctgacattgcttaatgtataccgtgctgctgatgagttctttcaaaagaacaagatggtacacagtgaagaaaaagctgaaaagaatcttagaaaatggtgcaaggataattatattaacagtcgctctctaaaacatgctcgtgatatccacagtcaaattgtgaggaatgttgaacaaatgggtcttcgcgtcacttcttgtgaagatgatacacttctcctccgcagatgccttgctgcctcattttttcttaaagcaactatgaagcagcctgatggtgcatacagggtgacgttaagtggtttgattgtgcaaatacacccgtcttctgtcctgttccgagccaagccagagagtatagttttcaatgaactggttcatactaaccatagttatgtccgtaatgtctctagaatcgattacttgtggctcgttgagttggcaccccacttgtatgctgtgcaagactaaatgtgttcattatttatatcggtaagagatcccttccttcaacaacaccatatccaaacgacaccatatccaatgtaattccacaagtgggacttggggaaggtcatatgtacgcagaccttatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="20317" stop="23081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20617" g_stop="20688" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20689" i_stop="21644" i_length="956">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21645" g_stop="21844" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="272" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21845" i_stop="22221" i_length="377">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22222" g_stop="22356" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="407" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22357" i_stop="22471" i_length="115">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22472" g_stop="22781" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="717" r_length="310" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E554578" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20617" e_stop="20688"/>
          <exon e_start="21645" e_stop="21844"/>
          <exon e_start="22222" e_stop="22356"/>
          <exon e_start="22472" e_stop="22781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGTTGATCTGTGTTGCAATGCTTTCAGTGGAATCTATTTTCTATGCACCACGTGAAAAGTTGGAAGAGGTAGTCCTTTGTGCTAGCTTGTTGTTACCCCCCCCCCCCCATCCCCCCACCTCCCACCCCCCAAAACATGTACATAGGATTGTAGTAAATATTTTCTTTCTATAAGTCCAATGAGTGTCAAACTGTTTTATTGCATCCAGCTCTTAAGATAGCATCGTATACTGAACCTTCCATTTTTAATTAAAAAAACATACTTTTGCTGGACACCATCCGCCTATCTCCCGATCATGAGAAAGCTTCGCTTACAGATAATCATTATGGAGAAAGTTAGGAGATCTTTGGCGAAACACTAGACGGGCCTGAATTTAAAAGCTTTGCAGCTTGTCTGGTGATAAGTAAGCTGTCTTGGTTAGGATCTTCTATGCCCGTCAGTTTCCTGGCCCTTGAAAGTCGTGCATTATAATATTGTCTAGTATGAGATTAGGAGGTCCATTACTTATTTAAAGAGACATAGATCAGTTTCATGCTCCAACATTCAAATATAAATCTTTTCAGTTTACAGGCTTTGAATAAGTTTGTCTAGTTGATGAATAGGGTGTAGAGCTTAAAGCTCGACCCTCTTTTGAATTCGTGAGAGACATTTCCCTTAACTCTTATAATGTTGATTCCGGCGATCGATCGACAAAATTTACCTTCAATATTTTAAATTATCTAACCATTGGAGTAGATAAAAAATTGTTCATGTCGTTTTAGCTGTTCTAGTTTCGTTTTTCTTTAAATTTCAAAATCTGTCTGTTAAGTTCAAGCTAATAGGGTGCCATGAAATGGTGAATGGACTGAAGAAGAATTTTGCGTGCAGTTTTAGCAACTGTTGTCGTCCCGTGTTATTGGCTTTTCTTTTTCCTGTGTTATCTTTCCACTTAGCAGTCACCTTTGACTTTGTTGATGTGTTATACTAATTTTGGCATGTAATATAATTCGAAAACAGTCTGAATAATTTTACCTGTGGTTGTCAGTCACGAAACGCATTGAAAAGCTTTGCAAGTCCAGAGGGGGATCATCTGACATTGCTTAATGTATACCGTGCTGCTGATGAGTTCTTTCAAAAGAACAAGATGGTACACAGTGAAGAAAAAGCTGAAAAGAATCTTAGAAAATGGTGCAAGGATAATTATATTAACAGTCGCTCTCTAAAACATGCTCGTGATATCCACAGGTAGGCATTATGTACTTCAACTTCAAGGAAATATTATTCTGTTCTGCTTTATGATTATTTCTACCTCCACAGTTCTTTTAGAGAAAATGATAAAACACACACATTCACGTTTTTGCCAGTTTTCTTACTTGAACTATCAGGTGTTCACTTTTACTACTGAACTATCACCGACTATTTCTCAAAACACATCTGAAGTATCAGTTGTTCCCTTTTCCTACCGTTCAGTGTTTGACCATTAACTCTTCTTTTTTTATGTGTTACATTCTTATGCTCATGCTCGTCATATTTCACTGTTATATAATGTACTTGCCGCTTCTTCTCATTTGTCCGGGTCCTTGAGTGAGTGAAAAATCTTAAGCTTTCTACCTATGTTTCAGTCAAATTGTGAGGAATGTTGAACAAATGGGTCTTCGCGTCACTTCTTGTGAAGATGATACACTTCTCCTCCGCAGATGCCTTGCTGCCTCATTTTTTCTTAAAGCAGCTATGAAGCAGCCTGATGGTGCATACAGGTTAAGATTAGTGGCTTTATTAGTCCGGCATCAATTAGTGTATCTGTTTGGAGTTCTTTGACATATCATCTATTCGTTCCCATATCTGACATTCATTTTAACTATCTACTGGCAGGGTGACGTTAAGTGGTTTGATTGTGCAAATACACCCGTCTTCTGTCCTGTTCCGAGCCAAGCCAGAGTGTATAGTTTTCAATGAACTGGTTCATACTAACCATAGTTATGTCCGTAATGTCTCTAGAATCGATTACTTGTGGCTCGTTGAGTTGGCACCCCACTTGTATGCTGTGCAAGACTAAATGTGTTCATTATTTATATCGGTAAGAGATCCCTTCCTTCAACAACACCATATCCAAACGACACCATATCCAATGTAATTCCACAAGTGGAACTTGGGGAGGGTCAGATGTACGCAGACCTTATCC</genome_strand>
        <mrna_strand>GAAATGTTGATCTGTGTTGCAATGCTTTCAGTGGAATCTATTTTCTATGCACCACGTGAAAAGTTGGAAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGAAACGCATTGAAAAGCTTTGCAAGTCCAGAGGGGGATCATCTGACATTGCTTAATGTATACCGTGCTGCTGATGAGTTCTTTCAAAAGAACAAGATGGTACACAGTGAAGAAAAAGCTGAAAAGAATCTTAGAAAATGGTGCAAGGATAATTATATTAACAGTCGCTCTCTAAAACATGCTCGTGATATCCACAG.........................................................................................................................................................................................................................................................................................................................................................................................TCAAATTGTGAGGAATGTTGAACAAATGGGTCTTCGCGTCACTTCTTGTGAAGATGATACACTTCTCCTCCGCAGATGCCTTGCTGCCTCATTTTTTCTTAAAGCAACTATGAAGCAGCCTGATGGTGCATACAG...................................................................................................................GGTGACGTTAAGTGGTTTGATTGTGCAAATACACCCGTCTTCTGTCCTGTTCCGAGCCAAGCCAGAGAGTATAGTTTTCAATGAACTGGTTCATACTAACCATAGTTATGTCCGTAATGTCTCTAGAATCGATTACTTGTGGCTCGTTGAGTTGGCACCCCACTTGTATGCTGTGCAAGACTAAATGTGTTCATTATTTATATCGGTAAGAGATCCCTTCCTTCAACAACACCATATCCAAACGACACCATATCCAATGTAATTCCACAAGTGGGACTTGGGGAAGGTCATATGTACGCAGACCTTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541942" ref_strand="+" ref_description="SGN-E541942 [TUS-62-P22]">
      <seq>agatggtctcggagtttgaacggagagtgtgaaaagaaacaggagctgaaacatagtaccaaaactaaccattggcaccaaagtgagagagctcaggttttgctcggtatattgcagtaatctgagtatagcagaaaatgccaataagttggatgctaattgagggctactaaaataaaccagcaagcagaggcggagttagaatattgtatacaaatttgaatgacttctgtagcttatgctactcgtataaatatttaattgtgaaccctgttactaaaacgagcttcgattcgatcacaatcttagaacatgtaaattttaaattttggtttcgccttgtattataataaagaaagatggatggatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="-" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="24048" stop="22822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23748" g_stop="23653" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23652" i_stop="23400" i_length="253">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23399" g_stop="23114" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="382" r_length="286" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="-" ref_id="SGN-E541942" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23748" e_stop="23653"/>
          <exon e_start="23399" e_stop="23114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGTCTCGGAGTTTGAACGGAGAGTGTGAAAAGAAACAGGAGCTGAAACATAGTACCAAAACTAACCATTGGCACCAAAGTGAGAGAGCTCAGGTAGGAAAACATAAACAATTAGGAGATTCATTTCACTATCTTTTTAAATTAACATGATTGAGTTCATTTTCTGATCTTTTTGTTCAAACAAAAGTCGAGTTGATTTTTCAGACGATCACTCAACTTATAGTTATTACCTCAAAAAGTCACCTTTGTTGAAGAAAATTGACTTTATGAGATAATAACTCGATTAATTGAGTAACCATACGAGAAATCAACCCAACAAAGGTTTAAAACTAATTTCTGATTGCAGGTTTTGCTCGGTATATTGCAGTAATCTGAGTATAGCAGAAAATGCCAATAAGTTGGATGCTAATTGAGGGCTACTAAAATAAACCAGCAAGCAGAGGCGGAGTTAGAATATTGTATACAAATTTGAATGACTTCTGTAGCTTATGCTACTCGTATAAATATTTAATTGTGAACCCTGTTACTAAAACGAGCTTCGATTCGATCACAATCTTAGAACATGTAAATTTTAAATTTTGGTTTCGCCTTGTATTATAATAAAGAAAGATGGATGGATTTCCATTGGAAGT</genome_strand>
        <mrna_strand>AGATGGTCTCGGAGTTTGAACGGAGAGTGTGAAAAGAAACAGGAGCTGAAACATAGTACCAAAACTAACCATTGGCACCAAAGTGAGAGAGCTCAG.............................................................................................................................................................................................................................................................GTTTTGCTCGGTATATTGCAGTAATCTGAGTATAGCAGAAAATGCCAATAAGTTGGATGCTAATTGAGGGCTACTAAAATAAACCAGCAAGCAGAGGCGGAGTTAGAATATTGTATACAAATTTGAATGACTTCTGTAGCTTATGCTACTCGTATAAATATTTAATTGTGAACCCTGTTACTAAAACGAGCTTCGATTCGATCACAATCTTAGAACATGTAAATTTTAAATTTTGGTTTCGCCTTGTATTATAATAAAGAAAGATGGATGGATTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300815" ref_strand="+" ref_description="SGN-E300815 [cLEW-8-I2]">
      <seq>gatggtctcggagtttgaacggagagtgtgaaaagaaacaggagctgaaacatagtaccaaaactaaccattggcaccaaagtgagagagctcaggttttgctcggtatattgcagtaatctgagtatagcacaaaatgccaataagttggatgctaattgagggctactaaaataaaccagcaagcagaggcggagttagaatattgtatacaaattggaatgacttctgtagcttatgctactcgtataaatatttaattgtgaaccctgttactaaaacgagcttcgattcgatcacaatcttagaacatgtaaattttaaattttggtttcgccttgtgttataataaagaaagatggatggatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="-" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="24047" stop="22822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23747" g_stop="23653" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23652" i_stop="23400" i_length="253">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23399" g_stop="23114" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="381" r_length="286" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="-" ref_id="SGN-E300815" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23747" e_stop="23653"/>
          <exon e_start="23399" e_stop="23114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTCTCGGAGTTTGAACGGAGAGTGTGAAAAGAAACAGGAGCTGAAACATAGTACCAAAACTAACCATTGGCACCAAAGTGAGAGAGCTCAGGTAGGAAAACATAAACAATTAGGAGATTCATTTCACTATCTTTTTAAATTAACATGATTGAGTTCATTTTCTGATCTTTTTGTTCAAACAAAAGTCGAGTTGATTTTTCAGACGATCACTCAACTTATAGTTATTACCTCAAAAAGTCACCTTTGTTGAAGAAAATTGACTTTATGAGATAATAACTCGATTAATTGAGTAACCATACGAGAAATCAACCCAACAAAGGTTTAAAACTAATTTCTGATTGCAGGTTTTGCTCGGTATATTGCAGTAATCTGAGTATAGCAGAAAATGCCAATAAGTTGGATGCTAATTGAGGGCTACTAAAATAAACCAGCAAGCAGAGGCGGAGTTAGAATATTGTATACAAATTTGAATGACTTCTGTAGCTTATGCTACTCGTATAAATATTTAATTGTGAACCCTGTTACTAAAACGAGCTTCGATTCGATCACAATCTTAGAACATGTAAATTTTAAATTTTGGTTTCGCCTTGTATTATAATAAAGAAAGATGGATGGATTTCCATTGGAAGT</genome_strand>
        <mrna_strand>GATGGTCTCGGAGTTTGAACGGAGAGTGTGAAAAGAAACAGGAGCTGAAACATAGTACCAAAACTAACCATTGGCACCAAAGTGAGAGAGCTCAG.............................................................................................................................................................................................................................................................GTTTTGCTCGGTATATTGCAGTAATCTGAGTATAGCACAAAATGCCAATAAGTTGGATGCTAATTGAGGGCTACTAAAATAAACCAGCAAGCAGAGGCGGAGTTAGAATATTGTATACAAATTGGAATGACTTCTGTAGCTTATGCTACTCGTATAAATATTTAATTGTGAACCCTGTTACTAAAACGAGCTTCGATTCGATCACAATCTTAGAACATGTAAATTTTAAATTTTGGTTTCGCCTTGTGTTATAATAAAGAAAGATGGATGGATTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541940" ref_strand="+" ref_description="SGN-E541940 [TUS-62-P22](-)">
      <seq>agatggtctcggagtttgaacggagagtgtgaaaagaaacaggagctgaaacatagtaccaaaactaaccattggcaccaaagtgagagagctcaggttttgctcggtatattgcagtaatctgagtatagcagaaaatgccaataagttggatgctaattgagggctactaaaataaaccagcaagcagaggcggagttagaatattgtatacaaatttgaatgacttctgtagcttatgctactcgtataaatatttaattgtgaaccctgttactaaaacgagcttcgattcgatcacaatcttagaacatgtaaattttaaattttggtttcgccttgtattataataaagaaagatggatggattcaaaaaaaaaaaaaaaaaactcgaggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="-" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="24048" stop="22822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23748" g_stop="23653" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23652" i_stop="23400" i_length="253">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23399" g_stop="23129" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="367" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="390"/>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="-" ref_id="SGN-E541940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23748" e_stop="23653"/>
          <exon e_start="23399" e_stop="23129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGTCTCGGAGTTTGAACGGAGAGTGTGAAAAGAAACAGGAGCTGAAACATAGTACCAAAACTAACCATTGGCACCAAAGTGAGAGAGCTCAGGTAGGAAAACATAAACAATTAGGAGATTCATTTCACTATCTTTTTAAATTAACATGATTGAGTTCATTTTCTGATCTTTTTGTTCAAACAAAAGTCGAGTTGATTTTTCAGACGATCACTCAACTTATAGTTATTACCTCAAAAAGTCACCTTTGTTGAAGAAAATTGACTTTATGAGATAATAACTCGATTAATTGAGTAACCATACGAGAAATCAACCCAACAAAGGTTTAAAACTAATTTCTGATTGCAGGTTTTGCTCGGTATATTGCAGTAATCTGAGTATAGCAGAAAATGCCAATAAGTTGGATGCTAATTGAGGGCTACTAAAATAAACCAGCAAGCAGAGGCGGAGTTAGAATATTGTATACAAATTTGAATGACTTCTGTAGCTTATGCTACTCGTATAAATATTTAATTGTGAACCCTGTTACTAAAACGAGCTTCGATTCGATCACAATCTTAGAACATGTAAATTTTAAATTTTGGTTTCGCCTTGTATTATAATAAAGAAAGATGGATGG</genome_strand>
        <mrna_strand>AGATGGTCTCGGAGTTTGAACGGAGAGTGTGAAAAGAAACAGGAGCTGAAACATAGTACCAAAACTAACCATTGGCACCAAAGTGAGAGAGCTCAG.............................................................................................................................................................................................................................................................GTTTTGCTCGGTATATTGCAGTAATCTGAGTATAGCAGAAAATGCCAATAAGTTGGATGCTAATTGAGGGCTACTAAAATAAACCAGCAAGCAGAGGCGGAGTTAGAATATTGTATACAAATTTGAATGACTTCTGTAGCTTATGCTACTCGTATAAATATTTAATTGTGAACCCTGTTACTAAAACGAGCTTCGATTCGATCACAATCTTAGAACATGTAAATTTTAAATTTTGGTTTCGCCTTGTATTATAATAAAGAAAGATGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365306" ref_strand="+" ref_description="SGN-E365306 [cLPT-2-I10]">
      <seq>tttttcctgctaatcgtatcattgatggatggaaacctgttgatgttggacctaacacattggaggaaatgatctccgtgcctttcgagatgcaagaaaattttgtggattggagctgtaaagttcagctcatcacatcaagaatctgctggagcatccaaattagcttcgatgctttataatcttagtcaaatgaactgtgacctaattgtggttggcaaacaggcatgtgagacgtttattgggagatcaaggcacgttacagctgatatgattgaaaatgcttccattgtctgggagtttctgaaagggagaaagcttcacgggctcttggcactagatagagcatatccatttaagttgaattgggatgctttatatgccaatacgaccctacctcttgttgttgacgtaggaagtggcaacggtttatttctgaccagaatggcgaagatgcggaaggattggaactttcttggacttgagagaaatgaaaaggttttagtcttatgcagaatgtttcatctgctgcttcctgtttttttaaaaaagaaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="-" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="27602" stop="24753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27293" g_stop="27226" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="96" r_length="69" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27225" i_stop="26981" i_length="245">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26980" g_stop="26732" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="345" r_length="249" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26731" i_stop="25976" i_length="756">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25975" g_stop="25900" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="421" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25899" i_stop="25192" i_length="708">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.568" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25191" g_stop="25053" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="560" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="-" ref_id="SGN-E365306" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27293" e_stop="27226"/>
          <exon e_start="26980" e_stop="26732"/>
          <exon e_start="25975" e_stop="25900"/>
          <exon e_start="25191" e_stop="25053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAAACCTGTTGATGTTGGACCTAACACATTGGGGGAAATGATCTCCGTG-CTTTCGAGATGCAAGGTAATCTCTGAAGTTCCTTCTGCTGAAGATTAGTATTAGAAGTGCTTGCTCAATTTTGAGGTCTCCGTTTGGTGTTCTTTGACTAGTTTGATATGAGTGAATAGAATCTGTCTTGTCATATTGCAATGGTAGGTTTAACCTTTGATTTGCGTCTATGAAATTGGTAATTTCTGTGATCTTATCATTTAATCTATTCTGTGGAAACAATATATGCTCAGAGAAGTATGTTTTCATTGTTTTTTCAGAAAATTTTGTGGATTGGAGCTGTAAAGTTCAGCTCATCACATCAAGAATCTGCTGGAGCATCCAAATTAGCTGCGATGCTTTATAATCTTAGTCAAATGAACTGTGATCTAATTGTGGTTGGCAAACAGGCATGTGAGACGTTTATTGGGAGATCAAGGCACGTTACAGCTGATATGATTGAAAATGCTTCCATTGTCTGGGAGTTTCTGAAAGGGAGAAAGCTTCACGGGCTCTTGGCACTAGATAGAGTAAGCCTTTTCTAACTCAACATGCTGTGTTAAAGAAATTTTAAAATCCTGAAACACATTGTTAACAAGTAACAACCATCCCACTTGTCTTGGATCCAACTTCCTCAAGTTTTCTAGAATGAAAAGGAAATCGTATTAATGGAAAAAAGGAGGTAGATACATGGATAACGACAGAGATTTCATTGAATAAAAAATGATACAAGAATTAATAAGCTCATCAATAACCCCTCCAATTCACATCTTAACTAATGTTTACAACATTGGCCGCGTGTTATGTCAACAACAACAAATTACCAGTGTAATCCCACAGGTGGATTCCGGGGAGGGTGATGTGTGCTCAGTCTTACCCCTACCTTGTGAAGATAGAGAGGTTGTTTCCGATGCCTCTACTTTATGTAATGAGGAAACTATGACTATTCTCATTTTAAGTGGAGCGTACTAGCTGGGGTGGTAGAATCATATATGTTGGGAAATATTTACTTAGAGTAGAGTAATAATACCAGGTTTGGAGTCTTTATTCCTGATAAAAGATTTACTGGCTTGCCTCCACTACGACTTCTTTTCTGTATAACTGCATGACATGCATTGCACGTTTTTCCCCTGTTTCCTGTCATCTAAGTACTTCAATACTCAATTGAAGTGCTGCTAATCATTCACATGGAACTTGACTTTGAACGTGCCAACTAATATACAAAGTATGCTTACCATAGGTGTATGTTAGCTTCAGAACTAATTGAGTGTTTGGTGTTTGTGCAGGCATATCCATTTAAGTTGAATTGGGATGCTTTATATGCCAATACAACCCTACCTCTTGTTGTTGACGTAGGAAGTGGTAAATCTCTCTTTTCCCTGATTCAATCTTTCTATAAATCTATCAGATCATTTGTGTTTGAATGTGTATAGTCATTTGTTACGCCAATAACAACTTCATATTTACAATGAATCCACTAATTTCCCTATCTGGGAGCAATGAATCCAGTGTTTCCCCGGTACTCGTGAAGGAAGCTTACACCCCCTAGTTTCTCTATTCATATATTTACAAATCAGCCGTATAGTTTAAACCAAGCAATGTCTGTGCTAGACTTTCAACTACAAGAACAAGTATACTTCAATCTCAGGCTAGCTGGGGACTTGGGGTTGGTTATATAAATCCTCAATGTTCATTTCACTACATGGAGCTCTATGAAGGCCACCTTTCTCATGTTATCCTCTACGCTTGCTATTTGCACCTTCTATAGGGTGTGACCATTTCTGATCTTATATGACCGCATTCATCTTAAGTCTGCATTTCCTACAACACTCATTTTGCTGATATATTGGGCCTTAGAAGCCCAATTTTTGTTCCTATGAAACATTGTTGGTCTTACAATCATTTCATAGTGAGAGGGAGACAACCACCTTATATTAACAAATAAAACTTTTAGTTATATTTTTCCATTTCCTTAGCTTTAGCTAACATATCAACACGACCACGCTGTTGTGCAGCATTTAAGGACACAATTAGTTCTTACTTCTCACAGATGAAAGCATAAAATTACAGGCAACGGTTTATTTCTGACCAGAATGGCAAAGATGCGGAAGGATTGGAACTTTCTTGGACTGGAGAGAAATGAAAAGGTTTTAGTCTTATGCAGAATGTTTCATCTGCTGCTTCCTGTTTTTTCAAAAAAGAAATCATG</genome_strand>
        <mrna_strand>GATGGAAACCTGTTGATGTTGGACCTAACACATTGGAGGAAATGATCTCCGTGCCTTTCGAGATGCAAG.....................................................................................................................................................................................................................................................AAAATTTTGTGGATTGGAGCTGTAAAGTTCAGCTCATCACATCAAGAATCTGCTGGAGCATCCAAATTAGCTTCGATGCTTTATAATCTTAGTCAAATGAACTGTGACCTAATTGTGGTTGGCAAACAGGCATGTGAGACGTTTATTGGGAGATCAAGGCACGTTACAGCTGATATGATTGAAAATGCTTCCATTGTCTGGGAGTTTCTGAAAGGGAGAAAGCTTCACGGGCTCTTGGCACTAGATAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATCCATTTAAGTTGAATTGGGATGCTTTATATGCCAATACGACCCTACCTCTTGTTGTTGACGTAGGAAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGGTTTATTTCTGACCAGAATGGCGAAGATGCGGAAGGATTGGAACTTTCTTGGACTTGAGAGAAATGAAAAGGTTTTAGTCTTATGCAGAATGTTTCATCTGCTGCTTCCTGTTTTTTTAAAAAAGAAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323811" ref_strand="+" ref_description="SGN-E323811 [cTOC-5-N2]">
      <seq>tcttgttagccatttcaggtaagtaatttgctaatttttgcatcattttttagttgtattgatatacttactatattagatactgtgttttcaaaaaaaaatttgggggtaccccttgccaacgaaagcaaagattttgcttttgggtcgagctcgttgcagcgggcttgcctagcgtgggtttgtgatttgcaagctattgcatagatttacccggtgcgcaccaaagaatagcggctacagtttttcttgttatcggaaaaaaaaattgggggtaagaaaggggattccgggaaaggagaatttagataatcaatcaattaaactactaagattcttcgtaatttttgtttattgttcatatgaaaaatttgatatttctcttgcagtttgtagttcaaaagtttgattcatagtgaaacaacaaaaagatgagttatgttctggaattcttcttanggtacactttacctagaatatcaaatttccacaatggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="-" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30694" stop="29596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30394" g_stop="29896" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="-" ref_id="SGN-E323811" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30394" e_stop="29896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTAGCCATTTCAGGTAAGTAATTTGCTAATTTTTGCATCATTTTTTAGTTGTATTGATATACTTACTATATCAGATACTGTGTTTTCAAAAAAAAATTTGGGGGTACCCCTTGCCAACGAAAGCAAAGATTTTGCTTTTGGGTCGAGCTCGTTGCAGCGGGCTTGCCTAGCGTGGGTTTGTGATTTGCAAGCTATTGCATAGATTTACCCGGTGCGCACCAAAGAATAGCGGCTACAGTTTTTCTTGTTATCGGAAAAAAAAATTGGGGGTAAGAAAGGGGATTCCGGGAAAGGAGAATTTAGATAATCAATCAATTAAACTACTAAGATTCTTCGTAATTTTTGTTTATTGTTCATATGAAAAATTTGATATTTTTCTTGCAGTTTGTAGTTCAAAAGTTTGATTCATAGTGAAACAACAAAAGGATGAGTTATGTTCTGGAATTCTTCTTAGGGTACACTTTACCTAGAATATCAAATTTCCACAATGGTTG</genome_strand>
        <mrna_strand>TCTTGTTAGCCATTTCAGGTAAGTAATTTGCTAATTTTTGCATCATTTTTTAGTTGTATTGATATACTTACTATATTAGATACTGTGTTTTCAAAAAAAAATTTGGGGGTACCCCTTGCCAACGAAAGCAAAGATTTTGCTTTTGGGTCGAGCTCGTTGCAGCGGGCTTGCCTAGCGTGGGTTTGTGATTTGCAAGCTATTGCATAGATTTACCCGGTGCGCACCAAAGAATAGCGGCTACAGTTTTTCTTGTTATCGGAAAAAAAAATTGGGGGTAAGAAAGGGGATTCCGGGAAAGGAGAATTTAGATAATCAATCAATTAAACTACTAAGATTCTTCGTAATTTTTGTTTATTGTTCATATGAAAAATTTGATATTTCTCTTGCAGTTTGTAGTTCAAAAGTTTGATTCATAGTGAAACAACAAAAAGATGAGTTATGTTCTGGAATTCTTCTTANGGTACACTTTACCTAGAATATCAAATTTCCACAATGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551058" ref_strand="+" ref_description="SGN-E551058 [TUS-55-A17]">
      <seq>cccgaatagaaatacggatctacgctgctaaatcttcaaagtacaaccagctaaagcagatttagctcacttttacttgatctccgccgtcaaaaatcttcttcaccggccgccgatctattctccgaccaagatgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaggaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccgcgggaaaatatttcctctggaaaccgatttgaagttgaagtgatggccaccctccagaccagacccatctttcgcgactgttcttggagaggatagttttagacagttctcctattacactaattcaattacttgagcagcactagtcgacctgtggatcgttgattgttagagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30447" stop="35430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30747" g_stop="30952" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31041" g_stop="31093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="259" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31677" g_stop="31777" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="360" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34906" g_stop="35130" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="585" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E551058" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30747" e_stop="30952"/>
          <exon e_start="31041" e_stop="31093"/>
          <exon e_start="31677" e_stop="31777"/>
          <exon e_start="34906" e_stop="35130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGAATAGAAATACGGATCTACGCTGCTAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGC</genome_strand>
        <mrna_strand>CCCGAATAGAAATACGGATCTACGCTGCTAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688842" ref_strand="+" ref_description="SGN-E688842 [t3_tus_55_A17]">
      <seq>cccgaatagaaatacggatctacgctgctaaatcttcaaagtacaaccagctaaagcagatttagctcacttttacttgatctccgccgtcaaaaatcttcttcaccggccgccgatctattctccgaccaagatgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaggaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccgcgggaaaatatttcctctggaaaccgatttgaagttgaagtgatggccaccctccagaccagacccatctttcgcgactgttcttggagaggatagttttagacagttctcctattacactaattcaattacttgagcagcactagtcgacctgtggatcgttgattgttagagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30447" stop="35430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30747" g_stop="30952" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31041" g_stop="31093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="259" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31677" g_stop="31777" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="360" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34906" g_stop="35130" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="585" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E688842" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30747" e_stop="30952"/>
          <exon e_start="31041" e_stop="31093"/>
          <exon e_start="31677" e_stop="31777"/>
          <exon e_start="34906" e_stop="35130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGAATAGAAATACGGATCTACGCTGCTAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGC</genome_strand>
        <mrna_strand>CCCGAATAGAAATACGGATCTACGCTGCTAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259767" ref_strand="+" ref_description="SGN-E259767 [cLEG-51-A5]">
      <seq>ccgaatagaaatacggatctacgctgctaaatcttcaaagtacaaccagctaaagcagatttagctcacttttacttgatctccgccgtcaaaaatcttcttcaccggccgccgatctattctccgaccaagatgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaggaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccgcgggaaaatatttcctctggaaaccgatttgaagttgaagtgatggccaccctccagaccagacccatctttcgcgactgttcttggagaggatagttttagacagttctcctattacactaattcaattacttgagcagcactagtcgacctgtggatcgttgattgttagagagcagacagaaaaaaagacactcagtttgcacattttcatttttgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30448" stop="35476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30748" g_stop="30952" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31041" g_stop="31093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="258" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31677" g_stop="31777" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="359" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34906" g_stop="35176" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="630" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E259767" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30748" e_stop="30952"/>
          <exon e_start="31041" e_stop="31093"/>
          <exon e_start="31677" e_stop="31777"/>
          <exon e_start="34906" e_stop="35176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAATAGAAATACGGATCTACGCTGCTAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTG</genome_strand>
        <mrna_strand>CCGAATAGAAATACGGATCTACGCTGCTAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369165" ref_strand="+" ref_description="SGN-E369165 [TUS-23-E6]">
      <seq>taaatcttcaaagtacaaccagctaaagcagatttagctcacttttacttgatctccgccgtcaaaaatcttcttcaccggccgccgatctattctccgaccaagatgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaggaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccgcgggaaaatatttcctctggaaaccgatttgaagttgaagtgatggccaccctccagaccagacccatctttcgcgactgttcttggagaggatagttttagacagttctcctattacactaattcaattacttgagcagcactagtcgacctgtggatcgttgatttggtagagagcagacagaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30475" stop="35445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30775" g_stop="30952" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31041" g_stop="31093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="231" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31677" g_stop="31777" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="332" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34906" g_stop="35145" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="573" r_length="241" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E369165" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30775" e_stop="30952"/>
          <exon e_start="31041" e_stop="31093"/>
          <exon e_start="31677" e_stop="31777"/>
          <exon e_start="34906" e_stop="35145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGA-TTGTTAGAGAGCAGACAGAAAAAAAGA</genome_strand>
        <mrna_strand>TAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTTGGTAGAGAGCAGACAGAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242690" ref_strand="+" ref_description="SGN-E242690 [cLED-30-P2]">
      <seq>taaatcttcaaagtacaaccagctaaagcagatttagctcacttttacttgatctccgccgtcaaaaatcttcttcaccggccgccgatctattctccgaccaagatgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaggaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccgcgggaaaatatttcctctggaaaccgatttgaagttgaagtgatggccaccctccagaccagacccatctttcgcgactgttcttggagaggatagttatagacagttctcctattacactaattgaattacttgagcagcactagtcgacctgtggatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30475" stop="35414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30775" g_stop="30952" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31041" g_stop="31093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="231" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31677" g_stop="31777" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="332" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34906" g_stop="35114" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="541" r_length="209" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E242690" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30775" e_stop="30952"/>
          <exon e_start="31041" e_stop="31093"/>
          <exon e_start="31677" e_stop="31777"/>
          <exon e_start="34906" e_stop="35114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCG</genome_strand>
        <mrna_strand>TAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTATAGACAGTTCTCCTATTACACTAATTGAATTACTTGAGCAGCACTAGTCGACCTGTGGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240678" ref_strand="+" ref_description="SGN-E240678 [cLED-21-I10]">
      <seq>taaatcttcaaagtacaaccagctaaagcagatttagctcacttttacttgatctccgccgtcaaaaatcttcttcaccggccgccgatctattctccgaccaagatgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaggaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccgcgggaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30475" stop="35265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30775" g_stop="30952" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31041" g_stop="31093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="231" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31677" g_stop="31777" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="332" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34906" g_stop="34965" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="392" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E240678" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30775" e_stop="30952"/>
          <exon e_start="31041" e_stop="31093"/>
          <exon e_start="31677" e_stop="31777"/>
          <exon e_start="34906" e_stop="34965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATT</genome_strand>
        <mrna_strand>TAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718274" ref_strand="+" ref_description="SGN-E718274 [FC04AG10]">
      <seq>atcggccgaattacttttacttgatctccgccgtcaaaaatcttcttcaccggccgccgatctattctccgaccaagatgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaggaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccgcgggaaaatatttcctctggaaaccgatttgaagttgaagtgatggccaccctccagaccagacccatctttcgcgactgttcttggagaggatagttttagacagttctcctattacactaattcaattacttgagcagcactagtcgacctgtggatcgttgattgttagagagcagacagaaaaaaagacactcagtttgcacattttcatttttgcttgcttaaattttagttttgtatgttaaagactcgaattttcagaacatatctcatagtgtctattagcatttattctctatctatgcagacatgaacctgttgtttgaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30513" stop="35585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30817" g_stop="30952" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="150" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31041" g_stop="31093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="203" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31677" g_stop="31777" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="304" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34906" g_stop="35287" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="686" r_length="382" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="687" polyA_stop="721"/>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E718274" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30817" e_stop="30952"/>
          <exon e_start="31041" e_stop="31093"/>
          <exon e_start="31677" e_stop="31777"/>
          <exon e_start="34906" e_stop="35287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGTATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTAGCATTTATTCTCTATCTATGCAGACATGAACCTGTTGTTTGAAAACG</genome_strand>
        <mrna_strand>TTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGTATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTAGCATTTATTCTCTATCTATGCAGACATGAACCTGTTGTTTGAAAAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719447" ref_strand="+" ref_description="SGN-E719447 [FC07DF05]">
      <seq>ggcggccaatcggccgaattggatctccgccgtccaaatcttcttcaccggccgccgatctattctccgaccaagacgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaggaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccgcgggaaaatatttcctctggaaaccgatttgaagttgaagtgatggccaccctccagaccagacccatctttcgcgactgttcttggagaggatagttttagacagttctcctattacactaattcaattacttgagcagcactagtcgacctgtggatcgttgattgttagagagcagacagaaaaaaagacactcagtttgcacattttcatttttgcttgcttaaattttagttttgtatgttaaagactcgaattttcagaacatatctcatagtgtctattagcatttattctctatctatgcagacatgaacctgttgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30540" stop="35582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30823" g_stop="30952" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="148" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31041" g_stop="31093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="201" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31677" g_stop="31777" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="302" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34906" g_stop="35282" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="679" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E719447" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30823" e_stop="30952"/>
          <exon e_start="31041" e_stop="31093"/>
          <exon e_start="31677" e_stop="31777"/>
          <exon e_start="34906" e_stop="35282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGTATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTAGCATTTATTCTCTATCTATGCAGACATGAACCTGTTGTTTGA</genome_strand>
        <mrna_strand>TGGATCTCCGCCGTCCAAA-TCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGACGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGTATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTAGCATTTATTCTCTATCTATGCAGACATGAACCTGTTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200565" ref_strand="+" ref_description="SGN-E200565 [cLEB-8-L4]">
      <seq>gcacgagcgccgtcaaaaatcttcttcaccggccgccgatctattctccgaccaagatgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaggaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccgcgggaaaatatttcctctggaaaccgatttgaagttgaagtgatggccaccctccagaccagacccatctttcgcgactgttcttggagaggatagttttagacagttctcctattacactaattcaattacttgagcagcactagtcgacctgtggatcgttgattgttagagagcagacagaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30531" stop="35445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30824" g_stop="30952" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31041" g_stop="31093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="182" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31677" g_stop="31777" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="283" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34906" g_stop="35145" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="523" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E200565" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30824" e_stop="30952"/>
          <exon e_start="31041" e_stop="31093"/>
          <exon e_start="31677" e_stop="31777"/>
          <exon e_start="34906" e_stop="35145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGA</genome_strand>
        <mrna_strand>GCACGAGCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713490" ref_strand="+" ref_description="SGN-E713490 [FB08DB05]">
      <seq>catctccgccgtcaaaaatcttcttcaccggccgccgatctattctccgaccaagatgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaagaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccacgggaaaatatttcctctggaaaccgatttgaagttgaagtgatggccaccctccagaccagacccatctttcgcgactgttcttggataggatagttttatacagttctcctattacactaattcaattacttgagcagcactagtcgacctgtggatcgttgattgttatagagcagacagaaaaaaagacactcagtttgcacattttcatttttgcttgcttacattttagttttgtatgttaaagactcgaattatcggaacatatctcatagtgtctattagcatttattctctatctatgcagacatgaacctgttgtttgaaaaaatataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30526" stop="35585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30825" g_stop="30952" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31041" g_stop="31093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="181" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31677" g_stop="31777" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="282" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34906" g_stop="35293" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="669" r_length="387" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E713490" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30825" e_stop="30952"/>
          <exon e_start="31041" e_stop="31093"/>
          <exon e_start="31677" e_stop="31777"/>
          <exon e_start="34906" e_stop="35293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGTATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTAGCATTTATTCTCTATCTATGCAGACATGAACCTGTTGTTTGAAAACGATCTTT</genome_strand>
        <mrna_strand>CATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAAGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCACGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGATAGGATAGTTTTATACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTATAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTACATTTTAGTTTTGTATGTTAAAGACTCGAATTATCGGAACATATCTCATAGTGTCTATTAGCATTTATTCTCTATCTATGCAGACATGAACCTGTTGTTTGAAAA-AATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713314" ref_strand="+" ref_description="SGN-E713314 [FB08BC02]">
      <seq>gatctccgccgtcaaaaatcttcttcaccggccgccgatctattctccgaccaagatgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaggaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccgcgggaaaatatttcctctggaaaccgatttgaagttgaagtgatggccaccctccagaccagacccatctttcgcgactgttcttggagaggatagttttagacagttctcctattacactaattcaattacttgagcagcactagtcgacctgtggatcgttgattgttagagagcagacagaaaaaaagacactcagtttgcacattttcatttttgcttgcttaaattttagttttgtatgttaaagactcgaattttcagaacatatctcatagtgtctattagcatttattctctatctatgcagacatgaacctgttgtttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30525" stop="35585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30825" g_stop="30952" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31041" g_stop="31093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="181" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31677" g_stop="31777" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="282" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34906" g_stop="35292" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="669" r_length="387" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E713314" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30825" e_stop="30952"/>
          <exon e_start="31041" e_stop="31093"/>
          <exon e_start="31677" e_stop="31777"/>
          <exon e_start="34906" e_stop="35292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGTATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTAGCATTTATTCTCTATCTATGCAGACATGAACCTGTTGTTTGAAAACGATCTT</genome_strand>
        <mrna_strand>GATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGTATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTAGCATTTATTCTCTATCTATGCAGACATGAACCTGTTGTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295102" ref_strand="+" ref_description="SGN-E295102 [cLET-20-A6]">
      <seq>cgccgtcaaaaatcttcttcaccggccgcctatctattctccgaccaagatgggtgccggtttcctcgttggcgtcatcggcgttctaattctatctcatgctacctattccacaatccaatatagggctttgcttaagattactgaggaggagttttctggaccacccattgatgttgttatcgaattgatagttagtttagtgttatgcttgtgggctgcaatggctgcccctggaaatttcaagtcaatccaccctcaatctgaggaaaacagggtggtcgctttgcctgccaatctggatttcatgatctttaatcaccgcgggaaaatatttcctctggaaaccgatttgaagttgaagtgatggccaccctccagaccagacccatctttcgcgactgttcttggagaggatagttttagacagttctcctattacactaattcaattacttgagcagcactagtcgacctgtggatcgttgattgttagagagcagacagaaaaaaagacactcagtttgcacattttcatttttgcttgcttaaattttagttttggatgttaaagactcgaattttcagaacatatctcatagtgtctattaccatttattctctatctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="30531" stop="35560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30831" g_stop="30952" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31041" g_stop="31093" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="175" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31677" g_stop="31777" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="276" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34906" g_stop="35260" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="631" r_length="355" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E295102" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30831" e_stop="30952"/>
          <exon e_start="31041" e_stop="31093"/>
          <exon e_start="31677" e_stop="31777"/>
          <exon e_start="34906" e_stop="35260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAATGTAATCCACTTAGGTTTTTGTTCCCTTTTTTACCTTTTTTTTTTTGCGGCATCAGTTTGAAGATTCTTTTTTTTTTGTTCAATTTCAGATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGATGTAAATTTTCATTTTTCACCTTTATTGTTGAATCTGCTGAGTTATTTATAGTTGACAAGAAGTTGAATTTTTTTTATATGTATGTGATGTGGTAGTGATTGATCTTTTCTTATTTTTTTGTTGTTCAATCAAGAAGTAAATTTTTGTTGTTCAATTGTGTAAATTTGCTGTTGTATTGTATTTCCTTTACATACTTTATTTTTGATATGTTTACTCGAGCTTAAGGTTTATCGGAAATAGTCTGACCTCGCTTGTGGGATTATACTCGGTATGTTGTTGTTGTGATGTGGTAATGATTATTCTATTTTTAATTGTTTTGTTGTTAAATCGTGTTGTTTGTTGTCGCTACTTGTTCTCTTATTAATTATTTTCAACATGGCTTCTTCACTACGGTATTATCTTTACATGTTTGATTTTTGATATGATTGCTTGAGCCGAAGGTGTATTGGAAACAACCTCTCTACCTTCATAGTATAGGGGTAAGGTTGTGCATACATCACCCTTCCTTGGCTCCATTTGTGGGATTATAGTGGGTATGTTGTGATGTGGTAATGATTGATCTAAAGTATTGGGTAATGTGCAGGTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAGGTACTTAATTTATTCTTTTTAATTGGGGTTCTTGTATTTTTATTGTTTTTTTTCTTTGTTTTGCAGTAATAGAAAATTTTGGATTTCTAGGGACTTGTAGGAATATAGATAGTTGGTGTAAATCCACTTTTATGGGAAGATCTATTCTCACCATCTCACAGTGGTCAATGTTCCCTTGCTCATATCTTCCATGTGTTATACTGTTATATATATTTTGTTCTTCTTAAGAACTCACAAAGGAGTTCTTCTGGCACTATATCAGTTTCTTTCTCTAAGTTAATGAAAAGCTAGGCTTACCTCGTGGACAAAGTGCCCCTCGGCTAGTTTAGAAGTCGCGCCAGGCCAATGAGTATTATGTGGAAATCCTCCTTCTCTTCCAATATATTTTTATCAATTTTGTGATTTGATTTAGCAAAAATATAACCTCTATAAATTTCCATCACTTTTCTTGCATATAGCGTCCTTTGTGGTCTAACATGTTCTCTGTCACCCTTGTAATATCCCTAAATGTCTACTTTATCATTCTTTTCTTGAAGTTCAGACAACGTTGAATATCACTTTCATTTTTATGTATCAAAATTCAAAACTAAGAAACTCTTTCTCTACTCATTTTGCGTCTTTCTTTGTTATTGTTGCCTACTGCAAACAAAATTTCGTAGCTTTGTGAGTTATACCATTCCGACTTCTTTATGGCACTTCCAATCGTTTACAAGGATACCTCAACTTCAATGGACAAAAGGCTTAGAGTGAGCTAATGTTTCTTTTGGTCATGGATGTGAATCTTTAAAGTTATCCTTGACTTCTCTGTTGTTGATAATTTCCATTTTATTACGTATCCTTGCCCTGCACCATTCCTGTGTCAGAATTACTGTGGTTAATGTCTTAGACTTTTAGATATAGCTAGATGCTACTTTCCAATGCAACTTCTCATTTTCTTCCTCTGGATAACTGTATTAGCTTCTAACTCCGATGCTCCCTTCTTTAAGCACTTGTCTTTAAATGTGTTTTGGTTTGACTGTTTAGTATCCACCACAGAATCATTGTGCTTGCAGCTCTTCTTCTTTTGTCGTGCCTGCCACTACACATCTGGTGTCACCCGTCTCTTTTGGGTGGTTAAAGCTTCTCCCGGTGACGACCTATTCATATTTGTGGCCTGCACATTTTCTTTTAGTAGAAAATGAAGTCTATTTGACTTTACCTACTTTTAAATGTTATCAAGTGCAGTTCCCCTTTTGTTCAGAGAAGTATAAGTTTGGTTGGTTGTTGACCAACCTTTGTCCCTTCAGGTGCAAGTGTTAACTAAAACTAAACATAAGTTAGGAAACCTGTAAATAACATTGTCATTTTCATTTCTAGTACCAAATCAATTTTTTGTTCGTATAGTTATGGTGCCTGGGCGAGTTTACACGCATCTTAACTGTTCCACAGAGTACCTGCCTCCCACAGACAGAGATACCGGGTAACTCTTTGTTACTGCAACAATATCTCCATATACTTTGTCAACAGTCAACACCATGATCTCTCCCATCAGATTTCCCCTAATAAGGATATGTTGATCATTTTTTATCCTTGGACATACCTATATCTTTCCAAAATTTAGTATTTGTCTCCTTTTAATCCAGTTTTGAAGTATAGAAAATTTGCTTTCTGTTTTGAATATAGACACTAAAAACTGGTGGTGTTGATTCTTTACTTTACCATTTGATAATCCTACCATTACTTTTCTCTATATCTACAAACTTTATTTTTTGAATCATAGTTTGTCAATGTGTTCTCCCGTTCCTACTTATATCTAACCTAGGAATACCGCAAATTATGACTTCTGCTATTGATTCCTCGACTTTTTTCCCTGTCAACTTAGCTTAGTTCATCTAACCCTCGACAGATCACATCTCATTAGAAAGACATGTATTTTCTTTTTTATTTAGGATTCTTTTTTTATTTACCCAGTCTCTCGTGGATACCAGAAACATGATATTTACGCTCCTCCTATTTAATATATTCACTAGTTTTGACTTTTCTTTGGACGAGTCTCAATATGTCCTTGGTTTAGCTGTTTAATCCTTCTCTCCTCAAACTACCAGAATCCTTTCTGTCACCATTATGCTGATGTAGTAGGAGTTATAACTAACTTCTTTATCAATATCCGTACACTGCATGTAAACCGTCGCTTATACTCCATAACACCCAGTGGAGATGACCAGATGGTTGTTTTTCTTTGTCACGATGATAATTTCTTGCTAGTGAATCAACAAAAGACTAGAATTTGTAGGTTTCTTCTTAGTGATTTTGGGTAAGCAATATATAGAAGAAAAACTTGACGCAGAGAGATCATGGGAAGCATAGTTTATAGTTAGAAAATATAGTTCGATATTAACTTGGTATTTTGGGATGATAACGTCCAAGTGTTTCATTGTTAGTAATCCCTCAATGCAGAAGCTAGTACTAGACGAAACGGCTGAATTGGTTAAATTTTGTGTAATGGAGGTAATGGGTTTGTTTCACTATTTTGCTAAAGTAAACCTGTATTTGCCGCCAAAGAAACAATGGTAGAATGAAAAGGAGTTCTGTTATGACTTGTATTTGACACTATACCTATTTCTACCTCCTAAGACCCTATAATGGGGATCAACCATTACATGATTTGGGGATAATTTTGCTCTCTGCAGTAGCTGAAAGGAAAGAAAAGTAGAGCGGAGGGGGGCAGAGGAATGTCTGGTCACCTTGGTATTTGAAATTGGAATCGTGGGGTTGGCTTTGGGTTATGGGTACCATTTGTTCAGCGTCTTTGTGGTTGTAGGGCATCTAATATTTTACTTCAGTGCTGAATAACAACTTCAGTGAAAGCTTTTGTGTTTTTCCTTGTCTCACCTGTTTTGAGAGTTACATCACCGTCCCTCAAATTCTAGGTAACAGTTTAGATTATCTTTTAGGGCATTTACTAAAGTAGAAAAGTATTCCTGCTTTCAAGTATTTTAAAGAAAAAATTGTGTGAAAGCACATACGTAGTCCTACTGTTTTAAGTTCATGTATAGCCAAGTGAGAATTTGTAGCAGAAGTCGGTTCATTTGCTCTTGATGTATATGCAATGTCCTTTTTTGGGTATCTTACGTATCTCTACAATGCAGGGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGTATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTAGCATTTATTCTCTATCTATG</genome_strand>
        <mrna_strand>CGCCGTCAAAAATCTTCTTCACCGGCCGCCTATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT........................................................................................ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCACCCTCAATCTGAGGAAAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGGATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTACCATTTATTCTCTATCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692446" ref_strand="+" ref_description="SGN-E692446 [LH_Ea08L20]">
      <seq>cctcgtgccgaattcggcacgaggagttcttttgcctgctcacttaagccctttctccatccccattgagatgtccggaacattgtcgatgcttccacttgacatgtttttaaatggaaatatcggtgaatataggttttgtgtatttaggttctaaaccttcttagtggatatatatttgaagttagtttgcagactgtcaatagaaggttagtgcacactataatgccaactcaaagaatatacaagtatcactagtttatgagtgacagtaggcatgtgatattttttcatttgtgcaaaagattatattgctgaaataagtgtcactagtatgttgcgggattaaattgtcattagaatcgttgagttgcagaagttaaggaataagtagcgcttgattcatgctagcaggtcgtctctgtgcttcattttcattcttttctgtcaattttttatcttaaaaattactgcatacacatctctctatcttgtgttccgttcttcttaagttcccacctcttccagctaaatggcatctgttggcatttgaacaacaaaggagcagaacgttaactcctaatccttctcactatttttcttctgtttctcattaagaacaaagcatttgttgattacaaaaatagatcagggatttaccttgagtaaagcaaaaactaaatgttttaggatacttgatgattgcctcagacacgtaaaaggtcttagtgttagcacgacctcaaataaaggaagatcacactcacccaaacttggtcggaggttgaaatcttgggaacttattaagtactgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0019J03-MeNzM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLe0019J03.3" temp_strand="+" temp_description="C09SLe0019J03.3  EF647610.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647610| upload_account_name:spain (1 - 44036)">
        <position start="42558" stop="43969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42861" g_stop="43669" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="818" r_length="796" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0019J03.3" gen_strand="+" ref_id="SGN-E692446" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0019J03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42861" e_stop="43669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTGTTTTGCCTGCTCACTTTAGCCCTTTCTCCATCCCCATTGAGATGTCCGGAACATTGTCGATGCTTCCACTTGACATGTTTTTAAATGGAAATATCGGTGAATATAGGTTTTGCGTATTTAGGTTCTAAACCTTCTTAGTGGATGTATTACTAAAAGTTAGTTTGCAGACTGTCAATAGAAGGTTAGTGCACACTATAATGCCAACTCAAAGAATATATGAGTATCACTAGTTTATGAGCGACAGTAGGCATGTGATATTTTTTCATTTGTGCAAAAGATTATATTGCTGAAATAAGTGTTACTAGTATGTTGCGGGATTAAATTGTCATTAGAATCATTGAGTTGCAGAAGTTTAGGAATAAAGTAGCGCTTGATTCATGCTAGCAGGTCGTCTCTGTGCTTCATTTTCATTCTTTTCTTTCAATTTTTTATCTTAAAAATTACTGCATACACATCTCTCTATCTTGTGTTCCATTCTTCTTAAGTTCCCACCTCTTCCAGCTAAATGGCATCTGTTGGCATTTGAACAACAAAGGAGCAGTACGTTCATGCTAAGTTGAACTCCTAATCGTTCTCACTATTTTTCTTCTGTTCCTCATTAAGAACAAAGCATTTGTTGATTAC-AAAATAGATCAGGGATTTACCTTAAGTAAAGCAAAAACTAAAAGTTTTAGGATATTTGATGATTGCCTCAGACACGTAAAAGGTCTTAGTGTTAGCACGACCTCAAATAAAGGAAGATCACACTCACCCAAACTTGGTCGGAGGTAGAAATCTTAGGAACTTATTAAGTACTGCTTTG</genome_strand>
        <mrna_strand>GGAGTTCTTTTGCCTGCTCACTTAAGCCCTTTCTCCATCCCCATTGAGATGTCCGGAACATTGTCGATGCTTCCACTTGACATGTTTTTAAATGGAAATATCGGTGAATATAGGTTTTGTGTATTTAGGTTCTAAACCTTCTTAGTGGATATA-TATTTGAAGTTAGTTTGCAGACTGTCAATAGAAGGTTAGTGCACACTATAATGCCAACTCAAAGAATATACAAGTATCACTAGTTTATGAGTGACAGTAGGCATGTGATATTTTTTCATTTGTGCAAAAGATTATATTGCTGAAATAAGTGTCACTAGTATGTTGCGGGATTAAATTGTCATTAGAATCGTTGAGTTGCAGAAGTTAAGGAAT-AAGTAGCGCTTGATTCATGCTAGCAGGTCGTCTCTGTGCTTCATTTTCATTCTTTTCTGTCAATTTTTTATCTTAAAAATTACTGCATACACATCTCTCTATCTTGTGTTCCGTTCTTCTTAAGTTCCCACCTCTTCCAGCTAAATGGCATCTGTTGGCATTTGAACAACAAAGGAGCAG-A-----A--C---GTT-AACTCCTAATCCTTCTCACTATTTTTCTTCTGTTTCTCATTAAGAACAAAGCATTTGTTGATTACAAAAATAGATCAGGGATTTACCTTGAGTAAAGCAAAAACTAAATGTTTTAGGATACTTGATGATTGCCTCAGACACGTAAAAGGTCTTAGTGTTAGCACGACCTCAAATAAAGGAAGATCACACTCACCCAAACTTGGTCGGAGGTTGAAATCTTGGGAACTTATTAAGTACTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="17055" PGL_stop="19695"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17055" e_stop="17192"/>
            <exon e_start="17470" e_stop="17673"/>
            <exon e_start="18747" e_stop="18907"/>
            <exon e_start="19628" e_stop="19695"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.996" e_score="0.986"/>
          <exon-intron don_prob="0.942" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.631" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="17055" e_stop="17192" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.996">
            <gDNA_intron_boundary i_start="17193" i_stop="17469" i_length="277"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17470" e_stop="17673" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17674" i_stop="18746" i_length="1073"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18747" e_stop="18907" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.631" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18908" i_stop="19627" i_length="720"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="19628" e_stop="19695" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17055" stop="17192"/>
              <exon start="17470" stop="17673"/>
              <exon start="18747" stop="18907"/>
              <exon start="19628" stop="19695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGCACGAGTTTTCTCAGAGTACTTTGGTGGTGCAAAAGCTGTTCATGTTCAGGGACGGCAGTTTCCTGTCGATATATTCTACACCCATAAGCCTGAGACAGATTGCATAGATGCAGCTTTGATTACTATATTTCAG : ATACATCTAGAGGAGGGACCTGGTGATGTGCTTGTATTCCTTACTGGTCAAGAGGAGATTGAATCCGTTGAGAGGCTTATCCATGAACGTCTCCGACAATTACCCGAATGCAGTAGGAAACTCTTAACTTTTCCCATATTCTCATCACTTCCCTCTGAGAAGCAAATGAGGGTTTTCATGCCTTCACCAGCTGGATATCGTAAG : GTGATACTAGCAACAAATATTGCTGAGACGTCAGTGACAATACCTGGTATTAGGTATGTTGTGGATCCTGGACTGGTGAAAGCCCGAACATATGATCCTAAGATGGGAGTTGATTCATTGATCATTGTCACAACATCTAAAGCTCAAGCTCTTCAAAGGAG : TGGACGTGCAGGACGTGATGGACCTGGGAAATGCTATCGTTTATATCAAGAAAGTTTCTTTGAGAAAC</gDNA_template>
            <first_frame> D  A  R  V  F  S  E  Y  F  G  G  A  K  A  V  H  V  Q  G  R  Q  F  P  V  D  I  F  Y  T  H  K  P  E  T  D  C  I  D  A  A  L  I  T  I  F  Q  :  I  H  L  E  E  G  P  G  D  V  L  V  F  L  T  G  Q  E  E  I  E  S  V  E  R  L  I  H  E  R  L  R  Q  L  P  E  C  S  R  K  L  L  T  F  P  I  F  S  S  L  P  S  E  K  Q  M  R  V  F  M  P  S  P  A  G  Y  R  K  :  V  I  L  A  T  N  I  A  E  T  S  V  T  I  P  G  I  R  Y  V  V  D  P  G  L  V  K  A  R  T  Y  D  P  K  M  G  V  D  S  L  I  I  V  T  T  S  K  A  Q  A  L  Q  R  S :   G  R  A  G  R  D  G  P  G  K  C  Y  R  L  Y  Q  E  S  F  F  E  K  </first_frame>
            <second_frame>  M  H  E  F  S  Q  S  T  L  V  V  Q  K  L  F  M  F  R  D  G  S  F  L  S  I  Y  S  T  P  I  S  L  R  Q  I  A  *  M  Q  L  *  L  L  Y  F  R :   Y  I  *  R  R  D  L  V  M  C  L  Y  S  L  L  V  K  R  R  L  N  P  L  R  G  L  S  M  N  V  S  D  N  Y  P  N  A  V  G  N  S  *  L  F  P  Y  S  H  H  F  P  L  R  S  K  *  G  F  S  C  L  H  Q  L  D  I  V  R :   *  Y  *  Q  Q  I  L  L  R  R  Q  *  Q  Y  L  V  L  G  M  L  W  I  L  D  W  *  K  P  E  H  M  I  L  R  W  E  L  I  H  *  S  L  S  Q  H  L  K  L  K  L  F  K  G   : V  D  V  Q  D  V  M  D  L  G  N  A  I  V  Y  I  K  K  V  S  L  R  N </second_frame>
            <third_frame>   C  T  S  F  L  R  V  L  W  W  C  K  S  C  S  C  S  G  T  A  V  S  C  R  Y  I  L  H  P  *  A  *  D  R  L  H  R  C  S  F  D  Y  Y  I  S   : D  T  S  R  G  G  T  W  *  C  A  C  I  P  Y  W  S  R  G  D  *  I  R  *  E  A  Y  P  *  T  S  P  T  I  T  R  M  Q  *  E  T  L  N  F  S  H  I  L  I  T  S  L  *  E  A  N  E  G  F  H  A  F  T  S  W  I  S  *   : G  D  T  S  N  K  Y  C  *  D  V  S  D  N  T  W  Y  *  V  C  C  G  S  W  T  G  E  S  P  N  I  *  S  *  D  G  S  *  F  I  D  H  C  H  N  I  *  S  S  S  S  S  K  E  :  W  T  C  R  T  *  W  T  W  E  M  L  S  F  I  S  R  K  F  L  *  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0019J03.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17055" stop="17192"/>
                    <exon start="17470" stop="17673"/>
                    <exon start="18747" stop="18907"/>
                    <exon start="19628" stop="19694"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DARVFSEYFGGAKAVHVQGRQFPVDIFYTHKPETDCIDAALITIFQIHLEEGPGDVLVFLTGQEEIESVERLIHERLRQLPECSRKLLTFPIFSSLPSEKQMRVFMPSPAGYRKVILATNIAETSVTIPGIRYVVDPGLVKARTYDPKMGVDSLIIVTTSKAQALQRSGRAGRDGPGKCYRLYQESFFEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="20617" PGL_stop="22823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20617" e_stop="20688"/>
            <exon e_start="21645" e_stop="21844"/>
            <exon e_start="22222" e_stop="22356"/>
            <exon e_start="22472" e_stop="22823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20617" e_stop="20688" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="20689" i_stop="21644" i_length="956"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21645" e_stop="21844" e_length="200"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21845" i_stop="22221" i_length="377"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22222" e_stop="22356" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.929" acc_prob="0.990">
            <gDNA_intron_boundary i_start="22357" i_stop="22471" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="22472" e_stop="22823" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20617" stop="20688"/>
              <exon start="21645" stop="21844"/>
              <exon start="22222" stop="22356"/>
              <exon start="22472" stop="22823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20617" stop="20688"/>
              <exon start="21645" stop="21844"/>
              <exon start="22222" stop="22356"/>
              <exon start="22472" stop="22781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATGTTGATCTGTGTTGCAATGCTTTCAGTGGAATCTATTTTCTATGCACCACGTGAAAAGTTGGAAGAG : TCACGAAACGCATTGAAAAGCTTTGCAAGTCCAGAGGGGGATCATCTGACATTGCTTAATGTATACCGTGCTGCTGATGAGTTCTTTCAAAAGAACAAGATGGTACACAGTGAAGAAAAAGCTGAAAAGAATCTTAGAAAATGGTGCAAGGATAATTATATTAACAGTCGCTCTCTAAAACATGCTCGTGATATCCACAG : TCAAATTGTGAGGAATGTTGAACAAATGGGTCTTCGCGTCACTTCTTGTGAAGATGATACACTTCTCCTCCGCAGATGCCTTGCTGCCTCATTTTTTCTTAAAGCAGCTATGAAGCAGCCTGATGGTGCATACAG : GGTGACGTTAAGTGGTTTGATTGTGCAAATACACCCGTCTTCTGTCCTGTTCCGAGCCAAGCCAGAGTGTATAGTTTTCAATGAACTGGTTCATACTAACCATAGTTATGTCCGTAATGTCTCTAGAATCGATTACTTGTGGCTCGTTGAGTTGGCACCCCACTTGTATGCTGTGCAAGACTAAATGTGTTCATTATTTATATCGGTAAGAGATCCCTTCCTTCAACAACACCATATCCAAACGACACCATATCCAATGTAATTCCACAAGTGGAACTTGGGGAGGGTCAGATGTACGCAGACCTTATCCCCATTACCTTTGTGTGGGGGCTAAAGAGGTCATCAATTTTGC</gDNA_template>
            <first_frame> E  M  L  I  C  V  A  M  L  S  V  E  S  I  F  Y  A  P  R  E  K  L  E  E  :  S  R  N  A  L  K  S  F  A  S  P  E  G  D  H  L  T  L  L  N  V  Y  R  A  A  D  E  F  F  Q  K  N  K  M  V  H  S  E  E  K  A  E  K  N  L  R  K  W  C  K  D  N  Y  I  N  S  R  S  L  K  H  A  R  D  I  H  S :   Q  I  V  R  N  V  E  Q  M  G  L  R  V  T  S  C  E  D  D  T  L  L  L  R  R  C  L  A  A  S  F  F  L  K  A  A  M  K  Q  P  D  G  A  Y  R :   V  T  L  S  G  L  I  V  Q  I  H  P  S  S  V  L  F  R  A  K  P  E  C  I  V  F  N  E  L  V  H  T  N  H  S  Y  V  R  N  V  S  R  I  D  Y  L  W  L  V  E  L  A  P  H  L  Y  A  V  Q  D  *  M  C  S  L  F  I  S  V  R  D  P  F  L  Q  Q  H  H  I  Q  T  T  P  Y  P  M  *  F  H  K  W  N  L  G  R  V  R  C  T  Q  T  L  S  P  L  P  L  C  G  G  *  R  G  H  Q  F  C </first_frame>
            <second_frame>  K  C  *  S  V  L  Q  C  F  Q  W  N  L  F  S  M  H  H  V  K  S  W  K  S :   H  E  T  H  *  K  A  L  Q  V  Q  R  G  I  I  *  H  C  L  M  Y  T  V  L  L  M  S  S  F  K  R  T  R  W  Y  T  V  K  K  K  L  K  R  I  L  E  N  G  A  R  I  I  I  L  T  V  A  L  *  N  M  L  V  I  S  T   : V  K  L  *  G  M  L  N  K  W  V  F  A  S  L  L  V  K  M  I  H  F  S  S  A  D  A  L  L  P  H  F  F  L  K  Q  L  *  S  S  L  M  V  H  T   : G  *  R  *  V  V  *  L  C  K  Y  T  R  L  L  S  C  S  E  P  S  Q  S  V  *  F  S  M  N  W  F  I  L  T  I  V  M  S  V  M  S  L  E  S  I  T  C  G  S  L  S  W  H  P  T  C  M  L  C  K  T  K  C  V  H  Y  L  Y  R  *  E  I  P  S  F  N  N  T  I  S  K  R  H  H  I  Q  C  N  S  T  S  G  T  W  G  G  S  D  V  R  R  P  Y  P  H  Y  L  C  V  G  A  K  E  V  I  N  F   </second_frame>
            <third_frame>   N  V  D  L  C  C  N  A  F  S  G  I  Y  F  L  C  T  T  *  K  V  G  R   : V  T  K  R  I  E  K  L  C  K  S  R  G  G  S  S  D  I  A  *  C  I  P  C  C  *  *  V  L  S  K  E  Q  D  G  T  Q  *  R  K  S  *  K  E  S  *  K  M  V  Q  G  *  L  Y  *  Q  S  L  S  K  T  C  S  *  Y  P  Q  :  S  N  C  E  E  C  *  T  N  G  S  S  R  H  F  L  *  R  *  Y  T  S  P  P  Q  M  P  C  C  L  I  F  S  *  S  S  Y  E  A  A  *  W  C  I  Q  :  G  D  V  K  W  F  D  C  A  N  T  P  V  F  C  P  V  P  S  Q  A  R  V  Y  S  F  Q  *  T  G  S  Y  *  P  *  L  C  P  *  C  L  *  N  R  L  L  V  A  R  *  V  G  T  P  L  V  C  C  A  R  L  N  V  F  I  I  Y  I  G  K  R  S  L  P  S  T  T  P  Y  P  N  D  T  I  S  N  V  I  P  Q  V  E  L  G  E  G  Q  M  Y  A  D  L  I  P  I  T  F  V  W  G  L  K  R  S  S  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0019J03.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20617" stop="20688"/>
                    <exon start="21645" stop="21844"/>
                    <exon start="22222" stop="22356"/>
                    <exon start="22472" stop="22655"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMLICVAMLSVESIFYAPREKLEESRNALKSFASPEGDHLTLLNVYRAADEFFQKNKMVHSEEKAEKNLRKWCKDNYINSRSLKHARDIHSQIVRNVEQMGLRVTSCEDDTLLLRRCLAASFFLKAAMKQPDGAYRVTLSGLIVQIHPSSVLFRAKPECIVFNELVHTNHSYVRNVSRIDYLWLVELAPHLYAVQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23748" PGL_stop="23114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23748" e_stop="23653"/>
            <exon e_start="23399" e_stop="23114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23748" e_stop="23653" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.955">
            <gDNA_intron_boundary i_start="23652" i_stop="23400" i_length="253"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23399" e_stop="23114" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23748" stop="23653"/>
              <exon start="23399" stop="23114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23748" stop="23653"/>
              <exon start="23399" stop="23129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23747" stop="23653"/>
              <exon start="23399" stop="23114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGGTCTCGGAGTTTGAACGGAGAGTGTGAAAAGAAACAGGAGCTGAAACATAGTACCAAAACTAACCATTGGCACCAAAGTGAGAGAGCTCAG : GTTTTGCTCGGTATATTGCAGTAATCTGAGTATAGCAGAAAATGCCAATAAGTTGGATGCTAATTGAGGGCTACTAAAATAAACCAGCAAGCAGAGGCGGAGTTAGAATATTGTATACAAATTTGAATGACTTCTGTAGCTTATGCTACTCGTATAAATATTTAATTGTGAACCCTGTTACTAAAACGAGCTTCGATTCGATCACAATCTTAGAACATGTAAATTTTAAATTTTGGTTTCGCCTTGTATTATAATAAAGAAAGATGGATGGATTTCCATTGGAAGT</gDNA_template>
            <first_frame> R  W  S  R  S  L  N  G  E  C  E  K  K  Q  E  L  K  H  S  T  K  T  N  H  W  H  Q  S  E  R  A  Q  :  V  L  L  G  I  L  Q  *  S  E  Y  S  R  K  C  Q  *  V  G  C  *  L  R  A  T  K  I  N  Q  Q  A  E  A  E  L  E  Y  C  I  Q  I  *  M  T  S  V  A  Y  A  T  R  I  N  I  *  L  *  T  L  L  L  K  R  A  S  I  R  S  Q  S  *  N  M  *  I  L  N  F  G  F  A  L  Y  Y  N  K  E  R  W  M  D  F  H  W  K  </first_frame>
            <second_frame>  D  G  L  G  V  *  T  E  S  V  K  R  N  R  S  *  N  I  V  P  K  L  T  I  G  T  K  V  R  E  L  R :   F  C  S  V  Y  C  S  N  L  S  I  A  E  N  A  N  K  L  D  A  N  *  G  L  L  K  *  T  S  K  Q  R  R  S  *  N  I  V  Y  K  F  E  *  L  L  *  L  M  L  L  V  *  I  F  N  C  E  P  C  Y  *  N  E  L  R  F  D  H  N  L  R  T  C  K  F  *  I  L  V  S  P  C  I  I  I  K  K  D  G  W  I  S  I  G  S </second_frame>
            <third_frame>   M  V  S  E  F  E  R  R  V  *  K  E  T  G  A  E  T  *  Y  Q  N  *  P  L  A  P  K  *  E  S  S   : G  F  A  R  Y  I  A  V  I  *  V  *  Q  K  M  P  I  S  W  M  L  I  E  G  Y  *  N  K  P  A  S  R  G  G  V  R  I  L  Y  T  N  L  N  D  F  C  S  L  C  Y  S  Y  K  Y  L  I  V  N  P  V  T  K  T  S  F  D  S  I  T  I  L  E  H  V  N  F  K  F  W  F  R  L  V  L  *  *  R  K  M  D  G  F  P  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0019J03.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="27293" PGL_stop="25053"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27293" e_stop="27226"/>
            <exon e_start="26980" e_stop="26732"/>
            <exon e_start="25975" e_stop="25900"/>
            <exon e_start="25191" e_stop="25053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.938" e_score="0.956"/>
          <exon-intron don_prob="0.940" acc_prob="0.994" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.568" e_score="0.987"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="27293" e_stop="27226" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.938">
            <gDNA_intron_boundary i_start="27225" i_stop="26981" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="26980" e_stop="26732" e_length="249"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.994">
            <gDNA_intron_boundary i_start="26731" i_stop="25976" i_length="756"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="25975" e_stop="25900" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.568">
            <gDNA_intron_boundary i_start="25899" i_stop="25192" i_length="708"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="25191" e_stop="25053" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27293" stop="27226"/>
              <exon start="26980" stop="26732"/>
              <exon start="25975" stop="25900"/>
              <exon start="25191" stop="25053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGGAAACCTGTTGATGTTGGACCTAACACATTGGGGGAAATGATCTCCGTGCTTTCGAGATGCAAG : AAAATTTTGTGGATTGGAGCTGTAAAGTTCAGCTCATCACATCAAGAATCTGCTGGAGCATCCAAATTAGCTGCGATGCTTTATAATCTTAGTCAAATGAACTGTGATCTAATTGTGGTTGGCAAACAGGCATGTGAGACGTTTATTGGGAGATCAAGGCACGTTACAGCTGATATGATTGAAAATGCTTCCATTGTCTGGGAGTTTCTGAAAGGGAGAAAGCTTCACGGGCTCTTGGCACTAGATAGA : GCATATCCATTTAAGTTGAATTGGGATGCTTTATATGCCAATACAACCCTACCTCTTGTTGTTGACGTAGGAAGTG : GCAACGGTTTATTTCTGACCAGAATGGCAAAGATGCGGAAGGATTGGAACTTTCTTGGACTGGAGAGAAATGAAAAGGTTTTAGTCTTATGCAGAATGTTTCATCTGCTGCTTCCTGTTTTTTCAAAAAAGAAATCATG</gDNA_template>
            <first_frame> D  G  N  L  L  M  L  D  L  T  H  W  G  K  *  S  P  C  F  R  D  A  R :   K  F  C  G  L  E  L  *  S  S  A  H  H  I  K  N  L  L  E  H  P  N  *  L  R  C  F  I  I  L  V  K  *  T  V  I  *  L  W  L  A  N  R  H  V  R  R  L  L  G  D  Q  G  T  L  Q  L  I  *  L  K  M  L  P  L  S  G  S  F  *  K  G  E  S  F  T  G  S  W  H  *  I  E :   H  I  H  L  S  *  I  G  M  L  Y  M  P  I  Q  P  Y  L  L  L  L  T  *  E  V  :  A  T  V  Y  F  *  P  E  W  Q  R  C  G  R  I  G  T  F  L  D  W  R  E  M  K  R  F  *  S  Y  A  E  C  F  I  C  C  F  L  F  F  Q  K  R  N  H  </first_frame>
            <second_frame>  M  E  T  C  *  C  W  T  *  H  I  G  G  N  D  L  R  A  F  E  M  Q   : E  N  F  V  D  W  S  C  K  V  Q  L  I  T  S  R  I  C  W  S  I  Q  I  S  C  D  A  L  *  S  *  S  N  E  L  *  S  N  C  G  W  Q  T  G  M  *  D  V  Y  W  E  I  K  A  R  Y  S  *  Y  D  *  K  C  F  H  C  L  G  V  S  E  R  E  K  A  S  R  A  L  G  T  R  *   : S  I  S  I  *  V  E  L  G  C  F  I  C  Q  Y  N  P  T  S  C  C  *  R  R  K  W :   Q  R  F  I  S  D  Q  N  G  K  D  A  E  G  L  E  L  S  W  T  G  E  K  *  K  G  F  S  L  M  Q  N  V  S  S  A  A  S  C  F  F  K  K  E  I  M </second_frame>
            <third_frame>   W  K  P  V  D  V  G  P  N  T  L  G  E  M  I  S  V  L  S  R  C  K  :  K  I  L  W  I  G  A  V  K  F  S  S  S  H  Q  E  S  A  G  A  S  K  L  A  A  M  L  Y  N  L  S  Q  M  N  C  D  L  I  V  V  G  K  Q  A  C  E  T  F  I  G  R  S  R  H  V  T  A  D  M  I  E  N  A  S  I  V  W  E  F  L  K  G  R  K  L  H  G  L  L  A  L  D  R  :  A  Y  P  F  K  L  N  W  D  A  L  Y  A  N  T  T  L  P  L  V  V  D  V  G  S   : G  N  G  L  F  L  T  R  M  A  K  M  R  K  D  W  N  F  L  G  L  E  R  N  E  K  V  L  V  L  C  R  M  F  H  L  L  L  P  V  F  S  K  K  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0019J03.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27291" stop="27226"/>
                    <exon start="26980" stop="26732"/>
                    <exon start="25975" stop="25900"/>
                    <exon start="25191" stop="25055"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WKPVDVGPNTLGEMISVLSRCKKILWIGAVKFSSSHQESAGASKLAAMLYNLSQMNCDLIVVGKQACETFIGRSRHVTADMIENASIVWEFLKGRKLHGLLALDRAYPFKLNWDALYANTTLPLVVDVGSGNGLFLTRMAKMRKDWNFLGLERNEKVLVLCRMFHLLLPVFSKKKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="30394" PGL_stop="29896"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30394" e_stop="29896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="30394" e_stop="29896" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30394" stop="29896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323811" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTGTTAGCCATTTCAGGTAAGTAATTTGCTAATTTTTGCATCATTTTTTAGTTGTATTGATATACTTACTATATCAGATACTGTGTTTTCAAAAAAAAATTTGGGGGTACCCCTTGCCAACGAAAGCAAAGATTTTGCTTTTGGGTCGAGCTCGTTGCAGCGGGCTTGCCTAGCGTGGGTTTGTGATTTGCAAGCTATTGCATAGATTTACCCGGTGCGCACCAAAGAATAGCGGCTACAGTTTTTCTTGTTATCGGAAAAAAAAATTGGGGGTAAGAAAGGGGATTCCGGGAAAGGAGAATTTAGATAATCAATCAATTAAACTACTAAGATTCTTCGTAATTTTTGTTTATTGTTCATATGAAAAATTTGATATTTTTCTTGCAGTTTGTAGTTCAAAAGTTTGATTCATAGTGAAACAACAAAAGGATGAGTTATGTTCTGGAATTCTTCTTAGGGTACACTTTACCTAGAATATCAAATTTCCACAATGGTTG</gDNA_template>
            <first_frame> S  C  *  P  F  Q  V  S  N  L  L  I  F  A  S  F  F  S  C  I  D  I  L  T  I  S  D  T  V  F  S  K  K  N  L  G  V  P  L  A  N  E  S  K  D  F  A  F  G  S  S  S  L  Q  R  A  C  L  A  W  V  C  D  L  Q  A  I  A  *  I  Y  P  V  R  T  K  E  *  R  L  Q  F  F  L  L  S  E  K  K  I  G  G  K  K  G  D  S  G  K  G  E  F  R  *  S  I  N  *  T  T  K  I  L  R  N  F  C  L  L  F  I  *  K  I  *  Y  F  S  C  S  L  *  F  K  S  L  I  H  S  E  T  T  K  G  *  V  M  F  W  N  S  S  *  G  T  L  Y  L  E  Y  Q  I  S  T  M  V  </first_frame>
            <second_frame>  L  V  S  H  F  R  *  V  I  C  *  F  L  H  H  F  L  V  V  L  I  Y  L  L  Y  Q  I  L  C  F  Q  K  K  I  W  G  Y  P  L  P  T  K  A  K  I  L  L  L  G  R  A  R  C  S  G  L  A  *  R  G  F  V  I  C  K  L  L  H  R  F  T  R  C  A  P  K  N  S  G  Y  S  F  S  C  Y  R  K  K  K  L  G  V  R  K  G  I  P  G  K  E  N  L  D  N  Q  S  I  K  L  L  R  F  F  V  I  F  V  Y  C  S  Y  E  K  F  D  I  F  L  A  V  C  S  S  K  V  *  F  I  V  K  Q  Q  K  D  E  L  C  S  G  I  L  L  R  V  H  F  T  *  N  I  K  F  P  Q  W  L </second_frame>
            <third_frame>   L  L  A  I  S  G  K  *  F  A  N  F  C  I  I  F  *  L  Y  *  Y  T  Y  Y  I  R  Y  C  V  F  K  K  K  F  G  G  T  P  C  Q  R  K  Q  R  F  C  F  W  V  E  L  V  A  A  G  L  P  S  V  G  L  *  F  A  S  Y  C  I  D  L  P  G  A  H  Q  R  I  A  A  T  V  F  L  V  I  G  K  K  N  W  G  *  E  R  G  F  R  E  R  R  I  *  I  I  N  Q  L  N  Y  *  D  S  S  *  F  L  F  I  V  H  M  K  N  L  I  F  F  L  Q  F  V  V  Q  K  F  D  S  *  *  N  N  K  R  M  S  Y  V  L  E  F  F  L  G  Y  T  L  P  R  I  S  N  F  H  N  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0019J03.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30219" stop="29986"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGFVICKLLHRFTRCAPKNSGYSFSCYRKKKLGVRKGIPGKENLDNQSIKLLRFFVIFVYCSYEKFDIFLAVCSSKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0019J03.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30385" stop="30188"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFQVSNLLIFASFFSCIDILTISDTVFSKKNLGVPLANESKDFAFGSSSLQRACLAWVCDLQAIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="30747" PGL_stop="35293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30747" e_stop="30952"/>
            <exon e_start="31041" e_stop="31093"/>
            <exon e_start="31677" e_stop="31777"/>
            <exon e_start="34906" e_stop="35293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.913" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30747" e_stop="30952" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.913" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30953" i_stop="31040" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31041" e_stop="31093" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.955">
            <gDNA_intron_boundary i_start="31094" i_stop="31676" i_length="583"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="31677" e_stop="31777" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31778" i_stop="34905" i_length="3128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34906" e_stop="35293" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30747" stop="30952"/>
              <exon start="31041" stop="31093"/>
              <exon start="31677" stop="31777"/>
              <exon start="34906" stop="35130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30747" stop="30952"/>
              <exon start="31041" stop="31093"/>
              <exon start="31677" stop="31777"/>
              <exon start="34906" stop="35130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30748" stop="30952"/>
              <exon start="31041" stop="31093"/>
              <exon start="31677" stop="31777"/>
              <exon start="34906" stop="35176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30775" stop="30952"/>
              <exon start="31041" stop="31093"/>
              <exon start="31677" stop="31777"/>
              <exon start="34906" stop="35145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30775" stop="30952"/>
              <exon start="31041" stop="31093"/>
              <exon start="31677" stop="31777"/>
              <exon start="34906" stop="35114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30775" stop="30952"/>
              <exon start="31041" stop="31093"/>
              <exon start="31677" stop="31777"/>
              <exon start="34906" stop="34965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30817" stop="30952"/>
              <exon start="31041" stop="31093"/>
              <exon start="31677" stop="31777"/>
              <exon start="34906" stop="35287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30823" stop="30952"/>
              <exon start="31041" stop="31093"/>
              <exon start="31677" stop="31777"/>
              <exon start="34906" stop="35282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30824" stop="30952"/>
              <exon start="31041" stop="31093"/>
              <exon start="31677" stop="31777"/>
              <exon start="34906" stop="35145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30825" stop="30952"/>
              <exon start="31041" stop="31093"/>
              <exon start="31677" stop="31777"/>
              <exon start="34906" stop="35293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30825" stop="30952"/>
              <exon start="31041" stop="31093"/>
              <exon start="31677" stop="31777"/>
              <exon start="34906" stop="35292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30831" stop="30952"/>
              <exon start="31041" stop="31093"/>
              <exon start="31677" stop="31777"/>
              <exon start="34906" stop="35260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295102" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCGAATAGAAATACGGATCTACGCTGCTAAATCTTCAAAGTACAACCAGCTAAAGCAGATTTAGCTCACTTTTACTTGATCTCCGCCGTCAAAAATCTTCTTCACCGGCCGCCGATCTATTCTCCGACCAAGATGGGTGCCGGTTTCCTCGTTGGCGTCATCGGCGTTCTAATTCTATCTCATGCTACCTATTCCACAATCCAAT : ATAGGGCTTTGCTTAAGATTACTGAGGAGGAGTTTTCTGGACCACCCATTGAT : GTTGTTATCGAATTGATAGTTAGTTTAGTGTTATGCTTGTGGGCTGCAATGGCTGCCCCTGGAAATTTCAAGTCAATCCATCCTCAATCTGAGGAAAACAG : GGTGGTCGCTTTGCCTGCCAATCTGGATTTCATGATCTTTAATCACCGCGGGAAAATATTTCCTCTGGAAACCGATTTGAAGTTGAAGTGATGGCCACCCTCCAGACCAGACCCATCTTTCGCGACTGTTCTTGGAGAGGATAGTTTTAGACAGTTCTCCTATTACACTAATTCAATTACTTGAGCAGCACTAGTCGACCTGTGGATCGTTGATTGTTAGAGAGCAGACAGAAAAAAAGACACTCAGTTTGCACATTTTCATTTTTGCTTGCTTAAATTTTAGTTTTGTATGTTAAAGACTCGAATTTTCAGAACATATCTCATAGTGTCTATTAGCATTTATTCTCTATCTATGCAGACATGAACCTGTTGTTTGAAAACGATCTTT</gDNA_template>
            <first_frame> P  E  *  K  Y  G  S  T  L  L  N  L  Q  S  T  T  S  *  S  R  F  S  S  L  L  L  D  L  R  R  Q  K  S  S  S  P  A  A  D  L  F  S  D  Q  D  G  C  R  F  P  R  W  R  H  R  R  S  N  S  I  S  C  Y  L  F  H  N  P  I :   *  G  F  A  *  D  Y  *  G  G  V  F  W  T  T  H  *   : C  C  Y  R  I  D  S  *  F  S  V  M  L  V  G  C  N  G  C  P  W  K  F  Q  V  N  P  S  S  I  *  G  K  Q  :  G  G  R  F  A  C  Q  S  G  F  H  D  L  *  S  P  R  E  N  I  S  S  G  N  R  F  E  V  E  V  M  A  T  L  Q  T  R  P  I  F  R  D  C  S  W  R  G  *  F  *  T  V  L  L  L  H  *  F  N  Y  L  S  S  T  S  R  P  V  D  R  *  L  L  E  S  R  Q  K  K  R  H  S  V  C  T  F  S  F  L  L  A  *  I  L  V  L  Y  V  K  D  S  N  F  Q  N  I  S  H  S  V  Y  *  H  L  F  S  I  Y  A  D  M  N  L  L  F  E  N  D  L  </first_frame>
            <second_frame>  P  N  R  N  T  D  L  R  C  *  I  F  K  V  Q  P  A  K  A  D  L  A  H  F  Y  L  I  S  A  V  K  N  L  L  H  R  P  P  I  Y  S  P  T  K  M  G  A  G  F  L  V  G  V  I  G  V  L  I  L  S  H  A  T  Y  S  T  I  Q   : Y  R  A  L  L  K  I  T  E  E  E  F  S  G  P  P  I  D  :  V  V  I  E  L  I  V  S  L  V  L  C  L  W  A  A  M  A  A  P  G  N  F  K  S  I  H  P  Q  S  E  E  N  R :   V  V  A  L  P  A  N  L  D  F  M  I  F  N  H  R  G  K  I  F  P  L  E  T  D  L  K  L  K  *  W  P  P  S  R  P  D  P  S  F  A  T  V  L  G  E  D  S  F  R  Q  F  S  Y  Y  T  N  S  I  T  *  A  A  L  V  D  L  W  I  V  D  C  *  R  A  D  R  K  K  D  T  Q  F  A  H  F  H  F  C  L  L  K  F  *  F  C  M  L  K  T  R  I  F  R  T  Y  L  I  V  S  I  S  I  Y  S  L  S  M  Q  T  *  T  C  C  L  K  T  I  F </second_frame>
            <third_frame>   R  I  E  I  R  I  Y  A  A  K  S  S  K  Y  N  Q  L  K  Q  I  *  L  T  F  T  *  S  P  P  S  K  I  F  F  T  G  R  R  S  I  L  R  P  R  W  V  P  V  S  S  L  A  S  S  A  F  *  F  Y  L  M  L  P  I  P  Q  S  N  :  I  G  L  C  L  R  L  L  R  R  S  F  L  D  H  P  L  M :   L  L  S  N  *  *  L  V  *  C  Y  A  C  G  L  Q  W  L  P  L  E  I  S  S  Q  S  I  L  N  L  R  K  T   : G  W  S  L  C  L  P  I  W  I  S  *  S  L  I  T  A  G  K  Y  F  L  W  K  P  I  *  S  *  S  D  G  H  P  P  D  Q  T  H  L  S  R  L  F  L  E  R  I  V  L  D  S  S  P  I  T  L  I  Q  L  L  E  Q  H  *  S  T  C  G  S  L  I  V  R  E  Q  T  E  K  K  T  L  S  L  H  I  F  I  F  A  C  L  N  F  S  F  V  C  *  R  L  E  F  S  E  H  I  S  *  C  L  L  A  F  I  L  Y  L  C  R  H  E  P  V  V  *  K  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0019J03.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30778" stop="30952"/>
                    <exon start="31041" stop="31093"/>
                    <exon start="31677" stop="31777"/>
                    <exon start="34906" stop="34996"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFKVQPAKADLAHFYLISAVKNLLHRPPIYSPTKMGAGFLVGVIGVLILSHATYSTIQYRALLKITEEEFSGPPIDVVIELIVSLVLCLWAAMAAPGNFKSIHPQSEENRVVALPANLDFMIFNHRGKIFPLETDLKLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="42861" PGL_stop="43669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42861" e_stop="43669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="42861" e_stop="43669" e_length="809"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42861" stop="43669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692446" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGTTGTTTTGCCTGCTCACTTTAGCCCTTTCTCCATCCCCATTGAGATGTCCGGAACATTGTCGATGCTTCCACTTGACATGTTTTTAAATGGAAATATCGGTGAATATAGGTTTTGCGTATTTAGGTTCTAAACCTTCTTAGTGGATGTATTACTAAAAGTTAGTTTGCAGACTGTCAATAGAAGGTTAGTGCACACTATAATGCCAACTCAAAGAATATATGAGTATCACTAGTTTATGAGCGACAGTAGGCATGTGATATTTTTTCATTTGTGCAAAAGATTATATTGCTGAAATAAGTGTTACTAGTATGTTGCGGGATTAAATTGTCATTAGAATCATTGAGTTGCAGAAGTTTAGGAATAAAGTAGCGCTTGATTCATGCTAGCAGGTCGTCTCTGTGCTTCATTTTCATTCTTTTCTTTCAATTTTTTATCTTAAAAATTACTGCATACACATCTCTCTATCTTGTGTTCCATTCTTCTTAAGTTCCCACCTCTTCCAGCTAAATGGCATCTGTTGGCATTTGAACAACAAAGGAGCAGTACGTTCATGCTAAGTTGAACTCCTAATCGTTCTCACTATTTTTCTTCTGTTCCTCATTAAGAACAAAGCATTTGTTGATTACAAAATAGATCAGGGATTTACCTTAAGTAAAGCAAAAACTAAAAGTTTTAGGATATTTGATGATTGCCTCAGACACGTAAAAGGTCTTAGTGTTAGCACGACCTCAAATAAAGGAAGATCACACTCACCCAAACTTGGTCGGAGGTAGAAATCTTAGGAACTTATTAAGTACTGCTTTG</gDNA_template>
            <first_frame> *  V  V  L  P  A  H  F  S  P  F  S  I  P  I  E  M  S  G  T  L  S  M  L  P  L  D  M  F  L  N  G  N  I  G  E  Y  R  F  C  V  F  R  F  *  T  F  L  V  D  V  L  L  K  V  S  L  Q  T  V  N  R  R  L  V  H  T  I  M  P  T  Q  R  I  Y  E  Y  H  *  F  M  S  D  S  R  H  V  I  F  F  H  L  C  K  R  L  Y  C  *  N  K  C  Y  *  Y  V  A  G  L  N  C  H  *  N  H  *  V  A  E  V  *  E  *  S  S  A  *  F  M  L  A  G  R  L  C  A  S  F  S  F  F  S  F  N  F  L  S  *  K  L  L  H  T  H  L  S  I  L  C  S  I  L  L  K  F  P  P  L  P  A  K  W  H  L  L  A  F  E  Q  Q  R  S  S  T  F  M  L  S  *  T  P  N  R  S  H  Y  F  S  S  V  P  H  *  E  Q  S  I  C  *  L  Q  N  R  S  G  I  Y  L  K  *  S  K  N  *  K  F  *  D  I  *  *  L  P  Q  T  R  K  R  S  *  C  *  H  D  L  K  *  R  K  I  T  L  T  Q  T  W  S  E  V  E  I  L  G  T  Y  *  V  L  L   </first_frame>
            <second_frame>  E  L  F  C  L  L  T  L  A  L  S  P  S  P  L  R  C  P  E  H  C  R  C  F  H  L  T  C  F  *  M  E  I  S  V  N  I  G  F  A  Y  L  G  S  K  P  S  *  W  M  Y  Y  *  K  L  V  C  R  L  S  I  E  G  *  C  T  L  *  C  Q  L  K  E  Y  M  S  I  T  S  L  *  A  T  V  G  M  *  Y  F  F  I  C  A  K  D  Y  I  A  E  I  S  V  T  S  M  L  R  D  *  I  V  I  R  I  I  E  L  Q  K  F  R  N  K  V  A  L  D  S  C  *  Q  V  V  S  V  L  H  F  H  S  F  L  S  I  F  Y  L  K  N  Y  C  I  H  I  S  L  S  C  V  P  F  F  L  S  S  H  L  F  Q  L  N  G  I  C  W  H  L  N  N  K  G  A  V  R  S  C  *  V  E  L  L  I  V  L  T  I  F  L  L  F  L  I  K  N  K  A  F  V  D  Y  K  I  D  Q  G  F  T  L  S  K  A  K  T  K  S  F  R  I  F  D  D  C  L  R  H  V  K  G  L  S  V  S  T  T  S  N  K  G  R  S  H  S  P  K  L  G  R  R  *  K  S  *  E  L  I  K  Y  C  F  </second_frame>
            <third_frame>   S  C  F  A  C  S  L  *  P  F  L  H  P  H  *  D  V  R  N  I  V  D  A  S  T  *  H  V  F  K  W  K  Y  R  *  I  *  V  L  R  I  *  V  L  N  L  L  S  G  C  I  T  K  S  *  F  A  D  C  Q  *  K  V  S  A  H  Y  N  A  N  S  K  N  I  *  V  S  L  V  Y  E  R  Q  *  A  C  D  I  F  S  F  V  Q  K  I  I  L  L  K  *  V  L  L  V  C  C  G  I  K  L  S  L  E  S  L  S  C  R  S  L  G  I  K  *  R  L  I  H  A  S  R  S  S  L  C  F  I  F  I  L  F  F  Q  F  F  I  L  K  I  T  A  Y  T  S  L  Y  L  V  F  H  S  S  *  V  P  T  S  S  S  *  M  A  S  V  G  I  *  T  T  K  E  Q  Y  V  H  A  K  L  N  S  *  S  F  S  L  F  F  F  C  S  S  L  R  T  K  H  L  L  I  T  K  *  I  R  D  L  P  *  V  K  Q  K  L  K  V  L  G  Y  L  M  I  A  S  D  T  *  K  V  L  V  L  A  R  P  Q  I  K  E  D  H  T  H  P  N  L  V  G  G  R  N  L  R  N  L  L  S  T  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0019J03.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43423" stop="43638"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VELLIVLTIFLLFLIKNKAFVDYKIDQGFTLSKAKTKSFRIFDDCLRHVKGLSVSTTSNKGRSHSPKLGRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 36 chains have been computed
$ 
$ memory statistics:
$ 44584 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 2123 bytes was the average size of a spliced alignment
$ 13064 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1866 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 36 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 12:44:00
-->
