<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-20 08:43:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8163" ref_strand="+" ref_description="SGN-M8163 C2_At4g02350 [cosii_markers]">
      <seq>tccagttacagacgtcaaatattatgcctgcatttccttatgttgcaccgttttcgtgtacggtgcctgattgctgtagaatagtgcggtcctttatcgaggattcagttagttttatgtcacatggtggtcagcttgatttctatgatgtggtgaagaagtacttggatcggcttttaactgaagtcctggatggagccctgttgaagctcattcatacgtctatcggtggtgttacccaagcaatgcagatggcagctaacatggctgtgtttgaacgcgcttgtgattttttctttcgtcatgctgcacagctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgcgatgctgctgaagagatgctttcaggtctgcttaagcaaaaggttgatgggttccttttgttgattgagaatgtgaattggatggccgatgatcctctacagagtggaaatgaatatgtgcatgaggtgattatttttcttgaaacactaacttctactgcccagcaaatattgcctgttcaagttctgaagagagttttgcaagatgttctgtgtcatatatcagagatgattgttggggctttactgggggaatcagttaaaaggttcaacgtgaatgctgttatggctcttgatgttgatatccgtatgttggaatcatttgctgaaaaccaagctcctctcctatctgaagcagatgctagtcagctgaaagcagcattgggcgagtccaggcagttggttaatctactcttaagcaatcacccggaaaatttcctgaatccagttattagagagagaagttataatgctttggactaccgcaaagttgttactatctcggaaaagatgaaggatcaaagtgacagactttttgggtcttttggcacaaggggagctaagcagaacactaaaaagaaatctcttgatgcattaattaaaagattgaaggacgtcaactgagtctgcgaatctctgtatgttatgttccttagggagatctccatattgtagttgtgttgattacttgctgatttcatatctagcttcctttttttctgcaaattgcctaccattttacgtaattttttcctcccctagttccacattgattgctgtattattcttcagagcatacatattcttttgcaactcagatatagtctttttatctcatgaaactagtctcttctcgtttggcttctttttccgtagaataattacatcttctcttcgatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25145" stop="27026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25445" g_stop="26728" g_length="1284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1284" r_length="1284" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-M8163" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25445" e_stop="26728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTTACAGACGTCAAATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATACATATTCTTTTGCAACTCAGATATAGTCTTTTTATCTCATGAAACTAGTCTCTTCTCGTTTGGCTTCTTTTTCCGTAGAATAATTACATCTTCTCTTCGATTTATT</genome_strand>
        <mrna_strand>TCCAGTTACAGACGTCAAATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATACATATTCTTTTGCAACTCAGATATAGTCTTTTTATCTCATGAAACTAGTCTCTTCTCGTTTGGCTTCTTTTTCCGTAGAATAATTACATCTTCTCTTCGATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1408" ref_strand="+" ref_description="SGN-M1408 T0318 [cos_markers]">
      <seq>tccagttacagacgtcaaatattatgcctgcatttccttatgttgcaccgttttcgtgtacggtgcctgattgctgtagaatagtgcggtcctttatcgaggattcagttagttttatgtcacatggtggtcagcttgatttctatgatgtggtgaagaagtacttggatcggcttttaactgaagtcctggatggagccctgttgaagctcattcatacgtctatcggtggtgttacccaagcaatgcagatggcagctaacatggctgtgtttgaacgcgcttgtgattttttctttcgtcatgctgcacagctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgcgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25145" stop="26130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25445" g_stop="25830" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-M1408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25445" e_stop="25830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTTACAGACGTCAAATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCT</genome_strand>
        <mrna_strand>TCCAGTTACAGACGTCAAATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8163-2" ref_strand="+" ref_description="SGN-M8163-2 C2_At4g02350-2 [cosii_markers]">
      <seq>gatgtggtgaagaagtacttggatcggcttttaactgaagtcctggatggagccctgttgaagctcattaatacgtctatcggtggtgttacccaagcaatgcagatggcggctaatatggctgtgtttgaacgtgcttgcgactttatctttcgtcatgctgcacagctttcagggattccattgagaatggcagagagggggaggagactgttccctttgactaaagcccgtgatgctgctgaagagatgctttcgggtctgcttaagcaaaaggttgatggtttccttttgttgattgagaatgtgaattggatggccgatgagcctctgcagagtggaaatgaatatgtgcatgaggtgattatttttcttgaaacactaacttctactgcccagcagatactgcctgttcaagttcttaagagagttttgcaagatgttctgtttcatatatcagagatgattgttggggctttactaggggaatcagttaaaaggttcaacgtgaatgctgttatggctcttaatgtcgatatccagatgttggaatcatttgctgaaaaccaagctcctctcttatctgaagtagatgctagtcagctgaaagcagcattggccgagtccaggcagttggttaatctactcttgagcaatcatccagaaaatttcctgaatccagttattagagaaagaagttataatgctttggactaccgcaaagttgttactatctcagaaaagatgaaggatcaaacagacaggctttttgggtcctttggcacaaggggagctaagcagaacactaaaaagaaatctcttgatgcattaattaaaagattgaaggatgtcaactgagtctgcaaatctctgtatgttatgttcctagggagatctccatattgtagttgtgttgattacttgctgatttcatatctagcttccttttctgcaaattgcctaccatttacgtatttttttcctcccgtagttccacattgattgctgtattgttcttcagagcatattcttttctattttgtggtcaaattcttttgcaactcagaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="25291" stop="26947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25591" g_stop="26623" g_length="1033"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1028" r_length="1028" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-M8163-2" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>1033</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8163-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25591" e_stop="26623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATAC</genome_strand>
        <mrna_strand>GATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTAATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCGGCTAATATGGCTGTGTTTGAACGTGCTTGCGACTTTATCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGTGATGCTGCTGAAGAGATGCTTTCGGGTCTGCTTAAGCAAAAGGTTGATGGTTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGAGCCTCTGCAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAGATACTGCCTGTTCAAGTTCTTAAGAGAGTTTTGCAAGATGTTCTGTTTCATATATCAGAGATGATTGTTGGGGCTTTACTAGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTAATGTCGATATCCAGATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCTTATCTGAAGTAGATGCTAGTCAGCTGAAAGCAGCATTGGCCGAGTCCAGGCAGTTGGTTAATCTACTCTTGAGCAATCATCCAGAAAATTTCCTGAATCCAGTTATTAGAGAAAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCAGAAAAGATGAAGGATCAAACAGACAGGCTTTTTGGGTCCTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGATGTCAACTGAGTCTGCAAATCTCTGTATGTTATGTTCC-TAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCC---TTTTCTGCAAATTGCCTACCA-TTTACGTATTTTTTTCCTCCCGTAGTTCCACATTGATTGCTGTATTGTTCTTCAGAGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7561-2" ref_strand="+" ref_description="SGN-M7561-2 C2_At2g47580-2 [cosii_markers]">
      <seq>gctaggcgtagacgaggagccatggcggaggcgaaccaaaatacgaacccgaatccggcccccagcggcggcgaagctccaccgaatgtgactatttacatcaacaacctcaatgaaaaaatcaagctagaagagctgaagaaatcgatgcacgctgtgttctcacagtttggtaagatacttgaggttttagcattcaaaaccctaaagcataaaggacaggcgtgggtagtgtttgaggaggtttcttctgctagcaatgcacttcgccagatgcagggttttcctttctacgacaagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaagctgatggtacttttgttccccgagaaaaaagaaagaggcatgaggataaagggagaaagaaaaaggaccagcaagattctaatcaagctggaatgggtctgaatcctgcgtatgctggtgcttatggtgctgcacctcctttctcacaaataccatacatgggtggagctaaagctgcagtaccggaggctcctgctcctccaaatagcatattgtttgtgcagaatcttcctcaccagtctactccaatgatgctacaaatgctcttctgccaatatccaggcttcaaggaagttaggatggttgaggcaaagcctggaattgctttcatagaatatggagatgagatgcaatcgactgttgctatgcaagccctgcaaggattcaaaattaccgccgagaatcccatgttgattacatatgcaaagaagtagataagactatattttagctgctgtctgtagaattaaacatcaactttcaactaggatttgagtgttgcaattttaagctttatgatccttggttatctaagtttagccgtgtatttgctgtgtactagcagcaccttgtaattttgatgtgcttctatagaccatttaccatttttatgaagtgtccgtctcatttgaacattatttggtggaaaaaaaaacaatctctttgcctctgtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="63652" stop="69843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63952" g_stop="64084" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98">
            <donor d_prob="0.970" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64183" g_stop="64355" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="306" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68056" g_stop="68149" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="400" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68460" g_stop="68548" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="489" r_length="89" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69014" g_stop="69546" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="1026" r_length="537" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-M7561-2" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>1022</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7561-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63952" e_stop="64084"/>
          <exon e_start="64183" e_stop="64355"/>
          <exon e_start="68056" e_stop="68149"/>
          <exon e_start="68460" e_stop="68548"/>
          <exon e_start="69014" e_stop="69546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAGGTACTCCGTACTTGTCTCGAATGTTTATGCAGAACATTATCTTTGTGTTTCACTGTTTGTAAAATGTGTTGTGTATATTGATGGTGATTAAATTGTAGAGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTACTCATTTCCATTGTTTTTGTATTCTTCACTACTGGATTCTGGCTTGTTACTGTTGCAATATGCTTACTGCAATTTCTACTTCATTGACACAAAATATATTCAGCTTTACTATCAATCCATCAACTGTACCTCTCAAACTATCGAGGTTCAGCTATATGTAGGTTTATATTGATTGGTTTATCGTAATTTAGTATTTTTATGCTGGCTGTGAATCCCCTTAATCTCCATGCTTCGTCTTTATATGGGCTTGGTACTGGATATGGTGCCTGAGCATAGGTGGAGCTGAAGAAATTAAGTTTATTTTCCTGAAAAAATTAATGATCTGTAGGAAAGGTATCATACCATATTTGTTCGATTAGTGATCCTAGAACATATTAATTGCTCAAGCATTTAGGCATCTTACCTATGCTTAATTAGAGAATACTATTATTCATAGTCAAACTTAGTGCTCCCACTGGTTGAGTTTATGTGTCACAATTTGACTCAAAACTAAGTTTAAGAAAGAAATAAAGACTTATGAAACTTATAGACTTAAATATGCAAAAACATTTGTCACTGTAAGACTTCTGAAACTTTTAATCTTAAACATGTCATATCAATTTTGTGTCTCTATGAAGTTGTTATCAAGAGTGAATGGGAGAATTTGTTATCACACTGTCAGTCTTGGGATGTGATGCATATCAGAAGTAAAGCTGTTAGGACTTAGGAGTAAGGATGAGTGTTCTTGAGGTCTTCAAACTAGTAGCCCTATATGGAAAGAAGAACTGAACTGCTTTTGGCATTTTTATTTAAGCAAACTACTAGATGAGCTTAATTGAAGAGATATGTTCAATGATGATTCATATAGTCAATTGCAACTTCCTTGGGATTGGATTCTTTTCATAACCCCAATACATGTTGTATGCATTACTAGAATAGCATGATAAAAATCAAAGACTATATCCAACTTGAAGCAATCTTGATTGTTCCCTCATTGCTTCTCAAAGGAGTTGGAGCATGTTTGTCGTAATCCAGCAAACAACTATACAAAATTTATCAAGCATAGAATGTTGTCTCAATCCTCAATATTTGGGATTGGCTACGCGTGTCCTTTACATTTCCGCTTTATTTAAGTTTCTAATAACTTAAATAATTTGTTTTTGAAGGATAGTTTGGCTAAAACTAGATCTTTTGTATATTACAATTATCCTATACTGACATACAAATCTCGACCACATCAAGGAACTCCTTATAATCACCAAACCTATCATGCTTGTGATTCAAGATATTTGATATGTTAGTGTGATTGACTGATAAGGGCACATTAGTTAGTTCATTGGCTAATGACATGAGGCTAAGATCCGGCATGACCAAGTGGCAAGATTAGCGGTTCTTAGTCTCGTTATTTGGAGGTAGATGGAGGAGATATAGAAACCATGTTGACTCATAAGATTCTATATTTAATAGCACCGGAATATTATTATAGTTAGCCTTCTCTCCCATGAATTCTCCGTCCAACCAAATTGGATCTGCCTTTGCAAGTCTTTCTGCAGTTTCTGCAAAGTGTATTTAGAACTTATGATGAGATGGCCTACGGTAGAAAACTCGATGGGTTAGGACAACCCATTTTGTGTTACCAATCCCAGTGGAACTCCCATTACTGGTCTATTAATGGAGGAGTAACATCAGCAACTAAAGCTTATCCCCAATTTGTTGAGTATTATCTATAAAGTTGCTTTGTTGTGTTATATCCTTGCTAAGTCCCAATTGATTATGTGAGCTTATACGTCTTTTCTGAGACAAGTTTTCTCTTTGTATTTTTAGTCGACCTCATTCCTTTTAGCACATTCTTTCATTGTAGTGTAATATCCATGGACCGTAGGTAAGATGTCTATACAGGACATAATCAGTCCTCGATATGCGTTACTTGCATCCTCAGTCAGATGTCTTCGGTTTTGTTCCTCTGTAATATTCATGTATGTATTGGTCCATAGATGGAAGAATGGAGTCAGAATAGATAATTGCAGTCATAAGCTGCTCCATTGTTTCTATAAACAACTGTATCTCCTGGTCTCAGAGATTGGTTAAGATAATCCTTGTCAAAGATATTCTGACCTGGAAATCCAAATGAGGATATTCTGAAATGTACATGCTGCTTTAGCATTATGTGAGCTGTGACTTTGCAAATTGTACTTCTTTAGACTTTAGTTTCAATTGTGTAGTAGATGCATATTTCTCATCTTCACTTGAGTTTAAGAGTGTTTTCCATGCTAATTCTGGGTGTCACCTCATTGCTTGGTGTTTCTTTTTTGAAAATTGTTTTGATGAATATGGTTTAGAGTGGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATATAAGAGTTGTTGCTTTCCATAGGCACCCTAGAAGTGCAAATAGTTGCAGGAGAAAAACTCAAATGTCCACAAAGTTGAGTAACTCAGGTGAAGTGTCTATGTGATGTACATTCAGGGGCGGCTCGACGTAATTGGGAGCCTAAAGAGAAATTTCAATTGGCGGCCTAAAATATAAATATACTTCATTTACGTATTTATTTAAAAAAATTATACTATTAAGATGAAAATTATTAGTACTTAATATTATTTTTTCAGATACTAGTTTTAAGTAAGGCTCAACATTGAAAAACATCTTAAGTGAGATAATTATTATATGTATTGTTAACACAATGATACAAGTAATAAGTTGATAAATATTAAATAAAGATAAGAGTTAGAATCATAGAATTTGACTCTAAAAGTTGATGACTTGGTATAACCTCATTTTAAAATGCTTAGAGTAACGCTTGAAACTAAAATTTGAAAAAAATGAAATAAAATTGTAATTCACTTTGTAACACTTTTCACTGTTAATTCTCATTTTTAACAAAGTACAAAAGATGTTAAAGTGGATAAAATAATTTGTTTTTAAATAAATTATACTTTTTATCATAAATAATAAATTTTTTATAAAAATTTTAACACATAATTTATTCTTCACAAAAAATTTTGGCCCCCGAAATTTGGGGCCTAAGGCGAAGGCCTTATTATTTAATGCATAGAGCAGGCTCTGTGTACATTAATGACGTTACACCAAAAAGACAAAGTACAAACATCTATATTTAGTTGTTTTTTGTTCTCTTGCAAAACATGTTACCACTATACTTTGTTGTTTTGTCCTCATCAAATAGTTGTTTTCTGTTCTTGCATGGGGTGCTGCCGTAACTACTGATGATTCACATGCAGAATGTTAAAATGTTTGTTGATATTGTTTTGCATTCTTTGGTTTTCTTACATCATACATGCTACTCAGTCCATTTCCTCATTGAGTTAAACAACTGGTTTGAGTGAATTTTCTCAATGTTTACTTTTAAATGCAATGCTACTCTTTGCATTTACATATGAGCATGTTACGGGGTTTAGCGAAGTGCATATAATGCTATACAATGTGACCACCTATTTGTTTGTGGTTCTTGCATGCGCATGCTATGTTCATCTGTTTATTACTCAAGCAAAATTAATGTTGCTTCTAGATGCTTAATGAGGTTGGGGTTTCGTACCTGGAGTTGCTTTTTTAGTTCCTGAATTAACTTCTTTAGTTCAATTATGTCTTAAAATGTCATTTTGATTACCACTGTTATATGTTTCTGGTGTACTATAGATTGGTTACATAGTTTTTTGACACACATATATGTATATCAGAGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAGGTAAGTTCTTTCATTTGAAAATTTTCTAGTTCCACTATTCGTTTGAATCCCTAGAGAAGGCTGGACTATACATCTAAGACATGTCATTTCATAAAGTTTGCTACATACTGTTTGCTATAAGCTACATATAATAATGGGCAGACAAATTTTACCCGTCAACTTCTGTACTTGTGATTAGCTCCCCCCCCCCCCCCCCCCTCCCCCCTTCCTTTCGTACGACCCAACCACATCCCTAAATAAAAAAGTAGTGGAAGTACAATTACTTGACTATTGCAATATTTTTAGCTATTCATTTACTGTGATCCAGCAGGGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCTGTAAGCATTTTCCCTTCTTTTCAGAAACTTTGTTTAGTTTCCTGTTTTCTGCGTCATATATTGAATTAATGGGATTGTATCATCTCTTTTCCTGTCACCACACTATACGAAGTTTATCAGATGATGTGATTTTGATTTCGTTTTGAAAGATGTAATCTGATTTTCCTATTAAGCACACTAACACATTTCTTGGGGTGAAATGAAAACGGGAGCAATACTTGAAAATGATCCATGTTGCATGGATAGTAGAAGTTATGTAGTTAAGAGTTAGAAGTTTGTTGCTGGGTTCTTGATTAGTTTGTGATTTGTCTCTCATTTTGGTGAAATCTTGATGTATTGAGTTACACCCTTCTAATGCATAGAGGTTTAAAATGTAGTCAATTAGTGCTTAATTGTGATTTTCTTAGATGCTTTTACCAGAAACTTCCTCAAATGTAATTGTTTCCCCTTCTCCACTTGTTGCAGTTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTACCGCCGACAATCCCATGCTGATTACATATGCAAAGAAGTAGATAAGACTATATTGTAGCTGCTATCTGTAGAATTAAACATTTACTTTC-ACTAGGATTTGAGTGTTGCAATTTTAAGCTTTATGATCCTTGGATATCTAAGTTTAGCCGTGTATTTGCTGTGTACT---AGCACCTTGTAATTTTGATGTGCTTCTATGGACCATTTGCCATTTTAAAAAAGTGTCAAGTCTCATTTAAACATTATTTGGTGG-AGAACAAACAATCTCTTTGCCTCTATAGTC</genome_strand>
        <mrna_strand>GCTAGGCGTAGACGAGGAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCCAGCGGCGGCGAAGCTCCACCGAATGTGACTATTTACATCAACAACCTCAATGAAAAAATCAAGCTAGAAG..................................................................................................AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTTGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGAGGAGGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTACGACAAGCCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCTGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCATGAGGATAAAG......................................................................................................................................................................................................................................................................................................................GGAGAAAGAAAAAGGACCAGCAAGATTCTAATCAAGCTGGAATGGGTCTGAATCCTGCGTATGCTGGTGCTTATGGTGCTGCACCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCTCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCACCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTCAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCTATGCAAGCCCTGCAAGGATTCAAAATTACCGCCGAGAATCCCATGTTGATTACATATGCAAAGAAGTAGATAAGACTATATTTTAGCTGCTGTCTGTAGAATTAAACATCAACTTTCAACTAGGATTTGAGTGTTGCAATTTTAAGCTTTATGATCCTTGGTTATCTAAGTTTAGCCGTGTATTTGCTGTGTACTAGCAGCACCTTGTAATTTTGATGTGCTTCTATAGACCATTTACCATTTTTATGAAGTGTC-CGTCTCATTTGAACATTATTTGGTGGAAAAAAAAACAATCTCTTTGCCTCTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7562-2" ref_strand="+" ref_description="SGN-M7562-2 C2_At2g47590-2 [cosii_markers]">
      <seq>ttttttttttttttttcttttcaaaaataatctctctattttagatagttatgttgacttttttaaatttcatatcgattcaaaatcagacaaataaattgactcgtacaaaaatttatccactcttaaattgatacatccacctctaccaacctctataaacacctcacccacctaacacaacaaataggcaaaaaaataaacatagtattattatattgacaccaactttaacaaaaccaacaaaattctttggagggtattaagccgtcgcttatcttcatcttcttcctctgattctgtacatttttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccattttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccaactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacaaattccaaattcaagtccactatttctgctaaccctcttcagaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgtattggctgtttactgttttgacccgagagattatggaaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgattctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcctacgaattacggaggctttagggagaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttcgttggttgatttggggctcaatcctagtgccaccatgggtcagaatggaaaatcagctgctaatgcttcccttgtgggaggagagaatgaagcactgcaaagacttagaaaatttgcagcagaatgtcaggcccaacccagtaaggaaaacaaggatggcacaaatgacagcatatatggtgcaaacttttcttgcaaaatatcgccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaagaagtccacttcaagaacgatttctgctgcctctgccaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggattttttcagattcatcaccaagaaatatagtgctgcaaaacaaaatagtgctgctccagtaactacttgcgtaggagctgctgcttaacgatggtatactcaaaaggagaatgaaggtttcctttttgtagcttgatttattttttccggaagtttagctgtggaatgttagagttggactgccattgaattgaagcattttttcttttgacaataagtgttgagacataaaagaatttgtcgccatttctagcaagtcgctctacaatccttcttatgctagtatttatatatttttgatttcatctgtagttgaaacaggtgtgataacaaacatacctgtagttgaaatatgtgttccatgtttgagattaccatccatcttgaacccgcggagagtatccttgagcatcagatgatttactattgatactcatttcaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="56761" stop="86832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82160" g_stop="82180" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.762"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82181" i_stop="82969" i_length="789">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82970" g_stop="84237" g_length="1268"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="1290" r_length="1269" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85537" g_stop="85766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1291" r_stop="1520" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85859" g_stop="85951" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1521" r_stop="1613" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86094" g_stop="86539" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1614" r_stop="2059" r_length="446" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-M7562-2" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2058</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7562-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82160" e_stop="82180"/>
          <exon e_start="82970" e_stop="84237"/>
          <exon e_start="85537" e_stop="85766"/>
          <exon e_start="85859" e_stop="85951"/>
          <exon e_start="86094" e_stop="86539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGTAATTTTTTTGTTTTATTTTAAGCACATAATATGTTTATAATTAAAAAATTAAATGATATTTTATATATCTATATATTAATATAGCAAGATTTGAATTATTTCTTTTTACTTTTTTAAATTTGTATCAAATAAAAACGAAATAAAGGAATTTAAAAGGAGGGAATACTTTGATCAAAGATTTTGAGTTTAAGATTAGAAATGAAAAAAAAAAAATTAAATAGAATGAGTTTATTCCCTTTTGTAAATTTCTAATATCAAAACAATTAGTCCATCCATTACAATAGGTTAGTTTTAGTGTTTTTTTCATTTTTACTCCCGTCATTTCATATTAATTTTGAGGTATTTTTTATTTTTCAGATTAATTTAAGTGTTTAATTTTAAGATTACTTTATAGTGTTCATTCAATTTTATACTTCATTAGTTAATATTGAAATTAGTAATTAATTAATATTTAATTATTTTAATTATAAAGTTGATAATTAATAAGGGTAAAAATAGAAAACTATGTTTAATTTATGTCTTAAACTTTTCTTAAAGGTTGTGAGATGCGTCAAAAATTAAATTATTATGAAATGGAGGGAGTAATAATGATTTGATTCTTACTTTTTGTATTACACGTTTAACAGTATAAGATTACATTGATAAAATCTACATATCTTCAATTTAAGATTTACAAAATTTAGTACACATTTCAAATTAACAATCTATTAAAAATAACTCTTTATTTTACATATTTAACATTACAAGATTATAAAATATACTAATACAATTTACCTATCTTTAATTTGAAATTAAGGGTACATCAAAAATAATCTCTCTATTTTAGATAGTTAT-TTGATTTTCTTAAATTTCATATCGATTCAAAATCAGACAAATAAATTGACTCGTACAAAAATTTATCCACTCTTAAATTGATACATCCACCTCTACCAACCTCTATAAACACCTCACCCACCTAACACAACAAATAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTCTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAATAATCTCTCTATTTTAGATAGTTATGTTGACTTTTTTAAATTTCATATCGATTCAAAATCAGACAAATAAATTGACTCGTACAAAAATTTATCCACTCTTAAATTGATACATCCACCTCTACCAACCTCTATAAACACCTCACCCACCTAACACAACAAATAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG..............................................................................................................................................ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7562-3" ref_strand="+" ref_description="SGN-M7562-3 C2_At2g47590-3 [cosii_markers]">
      <seq>caccagctttaacaaaccaacaaattctttggagggcattaagccgtagcttatctccatcgtcatcttcttcttcctctgtacatttctcaccggaaaactcatcggaaatggatcccaggaatcaattttccgataacccagaaacccaaaaacctcaagaagaacaacaacaacacctacccattttaccgatagcttcaatttctcttgctttatccacaatccttccaacccatttccttaatccccctaaaatctcaacccttttcaacaaacccaacaaagtcaaaatcccaactcaagtttcatctctttcaaatctctcactttcagcttcttctcttccacctacaaaatccaatttcaagtccaccatttctgctaaccctcttcaaaacactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtctgttttggctgtttactgtttcgacccgagagattatgggaaatcctcatctgggtttgataaaactgggccgtatagggctagttttttgattgaatctgttgctgaccttaggaagaatctacaggcaagagggtctgatcttgttgttagaattgggaagccggagactgtgttggtggaattagctaaagctgttggagctgaagctgtgtatgctcatagggaggtttcacatgatgaggttaaaggggaagataagattgatgctgtaatgaaggatgagggtttggaggtgaagtatttctggggtagtacattgtatcatgttgatgatttgccttttaagttggagcaaatgcccacgaattacggagggtttagggaaaaagtgcagggattggaggtaaggaagacaattgaggcattggatcaattgaggggattgcctgctagaggtgatgtggaacctggggagattccttctttggttgatttggggctcaatcctagtgccacaatgggtcagaatggaaaaccagctgctaatgcttcccttgtgggaggagagaatgaagcactgcagagacttagaaagtttgcagcagaatgtcaggtccaacccaataaggaaaacaaggatggcacaactgacagcatatatggtgcaaatttttcttgcaaaatatcaccttggttagctatgggatgtctctcaccccgttccatgtttgatgaattgaaaaagtccacttcaagaacgatttctgctgcctctggcaagaaagatggtggtagtggcactgggctgaactggctgatgtacgagctgttatggagggatttttttcaggttcatcaccaagaaatatagtgctgcaaaacaaaatagtgctactccagtaactgcttgtgtaggagctgctgcttaacgatggtatattcaaaaggagaatgaagttttcctttttgtagcttgatttatttttcccagaagtttagccgtggaatgttagagttgaactgtcattagattgaagcattcatcaatggtacattttgtcttttgacaataagtgttggatataaaaaatttgtcgccatttctagccagttgctctacaatccttcttatgctaccaatatttaatttttttctaaatttgatctgtagttgaaaaaggtgtataacaaaaattcctgtagttgaaatatgtgttccatgtttgagataactagttgttggtgatatgtcgactaaacttctagacattggaagtttttttagagttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82870" stop="86761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83170" g_stop="84237" g_length="1068"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1070" r_length="1070" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85537" g_stop="85766" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1071" r_stop="1300" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85859" g_stop="85951" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1301" r_stop="1394" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86094" g_stop="86454" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1395" r_stop="1772" r_length="378" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1834" polyA_stop="1844"/>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-M7562-3" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>1752</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7562-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83170" e_stop="84237"/>
          <exon e_start="85537" e_stop="85766"/>
          <exon e_start="85859" e_stop="85951"/>
          <exon e_start="86094" e_stop="86454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATT-CTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGC-AGA-C-ACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAGGTATTACTTTGTTCGATCTCAAATATCGTAGAGGATTTAGGTTTATTCAGTATTGGATGAAAGTAGTTTTACCTTTGATGTCAAAGAACTTGTAATTTAACTGAAATGACATATTTGCGAGTGTTGGAATGAAACTGGTGTAAATGTAGTGTAACCGATAATAAGGATGATTCATATAGTTGAACCCAACAAGTTTGAGATTGAGCTACACTAGTAGTCCTTTAGTTTCACGTAGTTTTCCGTTTCTTAGACACTTCATTGGAAGTGGTAGAGATGATCAAGATTCCATTTTTATACGAATGGAAGTGATTCAAGTCAGAAATAACTGATGGTTTAATTCAACATATCTCTTGTATATGTATTCTGAACATTTGTTAGATAAAACCACATGTTTTAAGTAGGTTTAGTATTTGGCGTTTGAACATCAGTAATTTAAATGATCCTTGCTCTATCGTGTAGTGTCCTTCTATAGTTGTGTGCAGTGTTCAGGAAAGCAAGGCGAAGCAATGCGAGCCTTCTACGCTTCACAAACTAGAATGAGTATGTGAGTGCTTCATCGCCTAAAGCGTGAAGCAGGGCCTTATCACTTTTTTCCACTTCCTACTTCCCTGAACACTGGTTGTGTACACTGAGTATCCAGCTCATAGCTGTGACATTTTGTTGATCAATATGTTAATGTACTTCTTATCAGGCCGTCACCAACTAGGACACTACACACCAACTATAGTGCTCATAGAATAGACCAAAGAACTCTTATTTGTTAGCCTGAGAATATGTAATGTAGAAAGAACATCTTTTAGCCACGTTTGGAGGTTACTTTTTTAGTATTGCCTGTAGCACAGGCCACAGTGCACAATCACTTAAGAACTGTTGCTTGAATTTTGTAATTGCCTTACTGTATTGTAACTTTGGAACTGTAAGTTGTTTCACATCACAAACTAGTCAAACAAAGTTTATTTGTTTCAGTTACTTTGCAAACTATGGCAAACATGAACATTTCTTTATCTTTGCATAATCATTTGCATTTGCACATCATTTAGAATGACTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTCAATTTTGTAGTTGCCATACTGTATTTTTCACCGACTTGAATTTTGTAATTGCTGTACTGTATTTAAACTTTCGGAGTTGTCAGTTGTTTAACATCACAAACTAGTCAAAAAAAGTTGATTCATTTCAGTTATTTCGCTAACTATTGTAAACATGAACATTTCTTTATCTTGGTATACTTAATCATTTGCATTTGCCAACCATTTAGAATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAGGTTAATGTCTTGTCAATAGTTTTCTTATCCTGATACTAATGCCTGTGAGACCAATATCACTGGCTAACGCTACATTGGTTGTTGTGCTGCAGAACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGA-TTTTTTCAGGTAATTTAGCATGCAACTTAGCTCCTATGATTGAGATGCTTGTTTCAGTTTCGTATAGTGTGATACTCGTTCCATCCTTTATGAAACAATTCCCGTCCTTTAAAATTATTCCTTGGATAACATTCTGTTTTCTGAATGCCAGATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTG-C----CATTG-A--A-T--TGAA--G--CATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCT---AGTATTT-ATATATTT-TTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAG</genome_strand>
        <mrna_strand>CACCAGCTTTAAC-AAACCAAC-AAATTCTTTGGAGGGCATTAAGCCGTAGCTTATCTCCATCGTCATCTTCTTCTTCCTCTGTACATTTCTCACCGGAAAACTCATCGGAAATGGATCCCAGGAATCAATTTTCCGATAACCCAGAAACCCAAAAACCTCAAGAAGAACAACAACAACACCTACCCATTTTACCGATAGCTTCAATTTCTCTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCCCCTAAAATCTCAACCCTTTTCAACAAACCCAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTTCAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAAATCCAATTTCAAGTCCACCATTTCTGCTAACCCTCTTCAAAACACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTTTTGGCTGTTTACTGTTTCGACCCGAGAGATTATGGGAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGAATCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCCACGAATTACGGAGGGTTTAGGGAAAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCTTTGGTTGATTTGGGGCTCAATCCTAGTGCCACAATGGGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAAAACCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAGAGACTTAGAAAGTTTGCAGCAGAATGTCAGGTCCAACCCAATAAGGAAAACAAGGATGGCACAACTGACAGCATATATGGTGCAAATTTTTCTTGCAAAATATCACCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAAAAGTCCACTTCAAG............................................................................................AACGATTTCTGCTGCCTCTGGCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTTCAG..............................................................................................................................................GTTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTACTCCAGTAACTGCTTGTGTAGGAGCTGCTGCTTAACGATGGTATATTCAAAAGGAGAATGAAGTTTTCCTTTTTGTAGCTTGATTTATTTTTCCCAGAAGTTTAGCCGTGGAATGTTAGAGTTGAACTGTCATTAGATTGAAGCATTCATCAATGGTACATTTTGTCTTTTGACAATAAGTGTTG-GATATAAAA-AATTTGTCGCCATTTCTAGCCAGTTGCTCTACAATCCTTCTTATGCTACCAATATTTAATTTTTTTCTAAATTTGATCTGTAGTTGAAAAAGGTGT-ATAACAAAAATTCCTGTAGTTGAAATATGTGTTCCATGTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1984" ref_strand="+" ref_description="SGN-M1984 T1407 [cos_markers]">
      <seq>tcgcttatcttcatcttcttcctctgattctgtacatttctcaccggaaaactcatcagaaatggatccaaagaatcaattttccgataactcagaagcccaaacacctcaagaagaacaacagcagacacccatcttaccgatagcttcaatttcacttgctttatccacaatccttccaacccatttccttaatcctcctaaaatctcaacccttttcaacaaaccaaacaaagtcaaaatcccgactcaagtttcatctcttacaaatctctcactttcagcttcttctcttccacctacgaattccaaattcaagtccactatttctgctaaccctcttcaaaatactctaactcttaaccctcttcgtccttctgagccttctaatgctgctgggcttcgacgagcgtcgattgtttggttccgtaacgatcttcgtgttcatgataatgagtgtcttaacgcggctcataatgagtccatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0278J12-n7OiY/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0278J12.3" temp_strand="+" temp_description="C09HBa0278J12.3  EF647608.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647608| upload_account_name:spain (1 - 102418)">
        <position start="82918" stop="84009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83218" g_stop="83709" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0278J12.3" gen_strand="+" ref_id="SGN-M1984" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0278J12.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83218" e_stop="83709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCT</genome_strand>
        <mrna_strand>TCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACA--TTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATCTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCGACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACGAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAAAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="25445" PGL_stop="26728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25445" e_stop="26728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="25445" e_stop="26728" e_length="1284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25445" stop="26728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25445" stop="25830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25591" stop="26623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8163-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAGTTACAGACGTCAAATATTATGCCTGCATTTCCTTATGTTGCACCGTTTTCGTGTACGGTGCCTGATTGCTGTAGAATAGTGCGGTCCTTTATCGAGGATTCAGTTAGTTTTATGTCACATGGTGGTCAGCTTGATTTCTATGATGTGGTGAAGAAGTACTTGGATCGGCTTTTAACTGAAGTCCTGGATGGAGCCCTGTTGAAGCTCATTCATACGTCTATCGGTGGTGTTACCCAAGCAATGCAGATGGCAGCTAACATGGCTGTGTTTGAACGCGCTTGTGATTTTTTCTTTCGTCATGCTGCACAGCTTTCAGGGATTCCATTGAGAATGGCAGAGAGGGGGAGGAGACTGTTCCCTTTGACTAAAGCCCGCGATGCTGCTGAAGAGATGCTTTCAGGTCTGCTTAAGCAAAAGGTTGATGGGTTCCTTTTGTTGATTGAGAATGTGAATTGGATGGCCGATGATCCTCTACAGAGTGGAAATGAATATGTGCATGAGGTGATTATTTTTCTTGAAACACTAACTTCTACTGCCCAGCAAATATTGCCTGTTCAAGTTCTGAAGAGAGTTTTGCAAGATGTTCTGTGTCATATATCAGAGATGATTGTTGGGGCTTTACTGGGGGAATCAGTTAAAAGGTTCAACGTGAATGCTGTTATGGCTCTTGATGTTGATATCCGTATGTTGGAATCATTTGCTGAAAACCAAGCTCCTCTCCTATCTGAAGCAGATGCTAGTCAGCTGAAAGCAGCATTGGGCGAGTCCAGGCAGTTGGTTAATCTACTCTTAAGCAATCACCCGGAAAATTTCCTGAATCCAGTTATTAGAGAGAGAAGTTATAATGCTTTGGACTACCGCAAAGTTGTTACTATCTCGGAAAAGATGAAGGATCAAAGTGACAGACTTTTTGGGTCTTTTGGCACAAGGGGAGCTAAGCAGAACACTAAAAAGAAATCTCTTGATGCATTAATTAAAAGATTGAAGGACGTCAACTGAGTCTGCGAATCTCTGTATGTTATGTTCCTTAGGGAGATCTCCATATTGTAGTTGTGTTGATTACTTGCTGATTTCATATCTAGCTTCCTTTTTTTCTGCAAATTGCCTACCATTTTACGTAATTTTTTCCTCCCCTAGTTCCACATTGATTGCTGTATTATTCTTCAGAGCATACATATTCTTTTGCAACTCAGATATAGTCTTTTTATCTCATGAAACTAGTCTCTTCTCGTTTGGCTTCTTTTTCCGTAGAATAATTACATCTTCTCTTCGATTTATT</gDNA_template>
            <first_frame> S  S  Y  R  R  Q  I  L  C  L  H  F  L  M  L  H  R  F  R  V  R  C  L  I  A  V  E  *  C  G  P  L  S  R  I  Q  L  V  L  C  H  M  V  V  S  L  I  S  M  M  W  *  R  S  T  W  I  G  F  *  L  K  S  W  M  E  P  C  *  S  S  F  I  R  L  S  V  V  L  P  K  Q  C  R  W  Q  L  T  W  L  C  L  N  A  L  V  I  F  S  F  V  M  L  H  S  F  Q  G  F  H  *  E  W  Q  R  G  G  G  D  C  S  L  *  L  K  P  A  M  L  L  K  R  C  F  Q  V  C  L  S  K  R  L  M  G  S  F  C  *  L  R  M  *  I  G  W  P  M  I  L  Y  R  V  E  M  N  M  C  M  R  *  L  F  F  L  K  H  *  L  L  L  P  S  K  Y  C  L  F  K  F  *  R  E  F  C  K  M  F  C  V  I  Y  Q  R  *  L  L  G  L  Y  W  G  N  Q  L  K  G  S  T  *  M  L  L  W  L  L  M  L  I  S  V  C  W  N  H  L  L  K  T  K  L  L  S  Y  L  K  Q  M  L  V  S  *  K  Q  H  W  A  S  P  G  S  W  L  I  Y  S  *  A  I  T  R  K  I  S  *  I  Q  L  L  E  R  E  V  I  M  L  W  T  T  A  K  L  L  L  S  R  K  R  *  R  I  K  V  T  D  F  L  G  L  L  A  Q  G  E  L  S  R  T  L  K  R  N  L  L  M  H  *  L  K  D  *  R  T  S  T  E  S  A  N  L  C  M  L  C  S  L  G  R  S  P  Y  C  S  C  V  D  Y  L  L  I  S  Y  L  A  S  F  F  S  A  N  C  L  P  F  Y  V  I  F  S  S  P  S  S  T  L  I  A  V  L  F  F  R  A  Y  I  F  F  C  N  S  D  I  V  F  L  S  H  E  T  S  L  F  S  F  G  F  F  F  R  R  I  I  T  S  S  L  R  F  I </first_frame>
            <second_frame>  P  V  T  D  V  K  Y  Y  A  C  I  S  L  C  C  T  V  F  V  Y  G  A  *  L  L  *  N  S  A  V  L  Y  R  G  F  S  *  F  Y  V  T  W  W  S  A  *  F  L  *  C  G  E  E  V  L  G  S  A  F  N  *  S  P  G  W  S  P  V  E  A  H  S  Y  V  Y  R  W  C  Y  P  S  N  A  D  G  S  *  H  G  C  V  *  T  R  L  *  F  F  L  S  S  C  C  T  A  F  R  D  S  I  E  N  G  R  E  G  E  E  T  V  P  F  D  *  S  P  R  C  C  *  R  D  A  F  R  S  A  *  A  K  G  *  W  V  P  F  V  D  *  E  C  E  L  D  G  R  *  S  S  T  E  W  K  *  I  C  A  *  G  D  Y  F  S  *  N  T  N  F  Y  C  P  A  N  I  A  C  S  S  S  E  E  S  F  A  R  C  S  V  S  Y  I  R  D  D  C  W  G  F  T  G  G  I  S  *  K  V  Q  R  E  C  C  Y  G  S  *  C  *  Y  P  Y  V  G  I  I  C  *  K  P  S  S  S  P  I  *  S  R  C  *  S  A  E  S  S  I  G  R  V  Q  A  V  G  *  S  T  L  K  Q  S  P  G  K  F  P  E  S  S  Y  *  R  E  K  L  *  C  F  G  L  P  Q  S  C  Y  Y  L  G  K  D  E  G  S  K  *  Q  T  F  W  V  F  W  H  K  G  S  *  A  E  H  *  K  E  I  S  *  C  I  N  *  K  I  E  G  R  Q  L  S  L  R  I  S  V  C  Y  V  P  *  G  D  L  H  I  V  V  V  L  I  T  C  *  F  H  I  *  L  P  F  F  L  Q  I  A  Y  H  F  T  *  F  F  P  P  L  V  P  H  *  L  L  Y  Y  S  S  E  H  T  Y  S  F  A  T  Q  I  *  S  F  Y  L  M  K  L  V  S  S  R  L  A  S  F  S  V  E  *  L  H  L  L  F  D  L   </second_frame>
            <third_frame>   Q  L  Q  T  S  N  I  M  P  A  F  P  Y  V  A  P  F  S  C  T  V  P  D  C  C  R  I  V  R  S  F  I  E  D  S  V  S  F  M  S  H  G  G  Q  L  D  F  Y  D  V  V  K  K  Y  L  D  R  L  L  T  E  V  L  D  G  A  L  L  K  L  I  H  T  S  I  G  G  V  T  Q  A  M  Q  M  A  A  N  M  A  V  F  E  R  A  C  D  F  F  F  R  H  A  A  Q  L  S  G  I  P  L  R  M  A  E  R  G  R  R  L  F  P  L  T  K  A  R  D  A  A  E  E  M  L  S  G  L  L  K  Q  K  V  D  G  F  L  L  L  I  E  N  V  N  W  M  A  D  D  P  L  Q  S  G  N  E  Y  V  H  E  V  I  I  F  L  E  T  L  T  S  T  A  Q  Q  I  L  P  V  Q  V  L  K  R  V  L  Q  D  V  L  C  H  I  S  E  M  I  V  G  A  L  L  G  E  S  V  K  R  F  N  V  N  A  V  M  A  L  D  V  D  I  R  M  L  E  S  F  A  E  N  Q  A  P  L  L  S  E  A  D  A  S  Q  L  K  A  A  L  G  E  S  R  Q  L  V  N  L  L  L  S  N  H  P  E  N  F  L  N  P  V  I  R  E  R  S  Y  N  A  L  D  Y  R  K  V  V  T  I  S  E  K  M  K  D  Q  S  D  R  L  F  G  S  F  G  T  R  G  A  K  Q  N  T  K  K  K  S  L  D  A  L  I  K  R  L  K  D  V  N  *  V  C  E  S  L  Y  V  M  F  L  R  E  I  S  I  L  *  L  C  *  L  L  A  D  F  I  S  S  F  L  F  F  C  K  L  P  T  I  L  R  N  F  F  L  P  *  F  H  I  D  C  C  I  I  L  Q  S  I  H  I  L  L  Q  L  R  Y  S  L  F  I  S  *  N  *  S  L  L  V  W  L  L  F  P  *  N  N  Y  I  F  S  S  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25447" stop="26448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLQTSNIMPAFPYVAPFSCTVPDCCRIVRSFIEDSVSFMSHGGQLDFYDVVKKYLDRLLTEVLDGALLKLIHTSIGGVTQAMQMAANMAVFERACDFFFRHAAQLSGIPLRMAERGRRLFPLTKARDAAEEMLSGLLKQKVDGFLLLIENVNWMADDPLQSGNEYVHEVIIFLETLTSTAQQILPVQVLKRVLQDVLCHISEMIVGALLGESVKRFNVNAVMALDVDIRMLESFAENQAPLLSEADASQLKAALGESRQLVNLLLSNHPENFLNPVIRERSYNALDYRKVVTISEKMKDQSDRLFGSFGTRGAKQNTKKKSLDALIKRLKDVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26435" stop="26728"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTSTESANLCMLCSLGRSPYCSCVDYLLISYLASFFSANCLPFYVIFSSPSSTLIAVLFFRAYIFFCNSDIVFLSHETSLFSFGFFFRRIITSSLRFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="63952" PGL_stop="69546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63952" e_stop="64084"/>
            <exon e_start="64183" e_stop="64355"/>
            <exon e_start="68056" e_stop="68149"/>
            <exon e_start="68460" e_stop="68548"/>
            <exon e_start="69014" e_stop="69546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="0.947"/>
          <exon-intron don_prob="0.963" acc_prob="0.976" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.979"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.933"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="63952" e_stop="64084" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64085" i_stop="64182" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="64183" e_stop="64355" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.976">
            <gDNA_intron_boundary i_start="64356" i_stop="68055" i_length="3700"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="68056" e_stop="68149" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68150" i_stop="68459" i_length="310"/>
          </intron>
          <exon e_serial="4" e_score="0.933">
            <gDNA_exon_boundary e_start="68460" e_stop="68548" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68549" i_stop="69013" i_length="465"/>
          </intron>
          <exon e_serial="5" e_score="0.931">
            <gDNA_exon_boundary e_start="69014" e_stop="69546" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63952" stop="64084"/>
              <exon start="64183" stop="64355"/>
              <exon start="68056" stop="68149"/>
              <exon start="68460" stop="68548"/>
              <exon start="69014" stop="69546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7561-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTAGGCGTAGACGAGCAGCCATGGCGGAGGCGAACCAAAATACGAACCCGAATCCGGCCCCTAGCGGCGGCGAAGTTCCACCAAATGTGACTATTTACATCAATAACCTCAATGAAAAAATTAAGCTTGAAG : AGCTGAAGAAATCGATGCACGCTGTGTTCTCACAGTTTGGTAAGATACTGGAGGTTTTAGCATTCAAAACCCTAAAGCATAAAGGACAGGCGTGGGTAGTGTTTGATGAAGTTTCTTCTGCTAGCAATGCACTTCGCCAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATG : AGAATACAATATGCAAAGACGAAATCTGATGTTGTAGCAAAAGCCGATGGTACTTTTGTTCCCCGAGAAAAAAGAAAGAGGCACGAGGATAAAG : GGAGAAAGAAGAAGGACCAGCAAGATGCTAATCAAGCTGGAATGGGCCGGAATCCTGCATATGCTGGTGCTTATGGTGCAGCACCTCCT : TTCTCACAAATACCATACATGGGTGGAGCTAAAGCTGCAGTACCGGAGGCTCCTGCTCCGCCAAATAGCATATTGTTTGTGCAGAATCTTCCTCATCAGTCTACTCCAATGATGCTACAAATGCTCTTCTGCCAATATCCAGGCTTTAAGGAAGTTAGGATGGTTGAGGCAAAGCCTGGAATTGCTTTCATAGAATATGGAGATGAGATGCAATCGACTGTTGCCATGCAGGCCCTGCAAGGCTTCAAAATTACCGCCGACAATCCCATGCTGATTACATATGCAAAGAAGTAGATAAGACTATATTGTAGCTGCTATCTGTAGAATTAAACATTTACTTTCACTAGGATTTGAGTGTTGCAATTTTAAGCTTTATGATCCTTGGATATCTAAGTTTAGCCGTGTATTTGCTGTGTACTAGCACCTTGTAATTTTGATGTGCTTCTATGGACCATTTGCCATTTTAAAAAAGTGTCAAGTCTCATTTAAACATTATTTGGTGGAGAACAAACAATCTCTTTGCCTCTATAGTC</gDNA_template>
            <first_frame> A  R  R  R  R  A  A  M  A  E  A  N  Q  N  T  N  P  N  P  A  P  S  G  G  E  V  P  P  N  V  T  I  Y  I  N  N  L  N  E  K  I  K  L  E   : E  L  K  K  S  M  H  A  V  F  S  Q  F  G  K  I  L  E  V  L  A  F  K  T  L  K  H  K  G  Q  A  W  V  V  F  D  E  V  S  S  A  S  N  A  L  R  Q  M  Q  G  F  P  F  Y  D  K  P  M  :  R  I  Q  Y  A  K  T  K  S  D  V  V  A  K  A  D  G  T  F  V  P  R  E  K  R  K  R  H  E  D  K   : G  R  K  K  K  D  Q  Q  D  A  N  Q  A  G  M  G  R  N  P  A  Y  A  G  A  Y  G  A  A  P  P  :  F  S  Q  I  P  Y  M  G  G  A  K  A  A  V  P  E  A  P  A  P  P  N  S  I  L  F  V  Q  N  L  P  H  Q  S  T  P  M  M  L  Q  M  L  F  C  Q  Y  P  G  F  K  E  V  R  M  V  E  A  K  P  G  I  A  F  I  E  Y  G  D  E  M  Q  S  T  V  A  M  Q  A  L  Q  G  F  K  I  T  A  D  N  P  M  L  I  T  Y  A  K  K  *  I  R  L  Y  C  S  C  Y  L  *  N  *  T  F  T  F  T  R  I  *  V  L  Q  F  *  A  L  *  S  L  D  I  *  V  *  P  C  I  C  C  V  L  A  P  C  N  F  D  V  L  L  W  T  I  C  H  F  K  K  V  S  S  L  I  *  T  L  F  G  G  E  Q  T  I  S  L  P  L  *   </first_frame>
            <second_frame>  L  G  V  D  E  Q  P  W  R  R  R  T  K  I  R  T  R  I  R  P  L  A  A  A  K  F  H  Q  M  *  L  F  T  S  I  T  S  M  K  K  L  S  L  K  :  S  *  R  N  R  C  T  L  C  S  H  S  L  V  R  Y  W  R  F  *  H  S  K  P  *  S  I  K  D  R  R  G  *  C  L  M  K  F  L  L  L  A  M  H  F  A  R  C  R  V  F  L  S  M  I  S  L  * :   E  Y  N  M  Q  R  R  N  L  M  L  *  Q  K  P  M  V  L  L  F  P  E  K  K  E  R  G  T  R  I  K  :  G  E  R  R  R  T  S  K  M  L  I  K  L  E  W  A  G  I  L  H  M  L  V  L  M  V  Q  H  L  L :   S  H  K  Y  H  T  W  V  E  L  K  L  Q  Y  R  R  L  L  L  R  Q  I  A  Y  C  L  C  R  I  F  L  I  S  L  L  Q  *  C  Y  K  C  S  S  A  N  I  Q  A  L  R  K  L  G  W  L  R  Q  S  L  E  L  L  S  *  N  M  E  M  R  C  N  R  L  L  P  C  R  P  C  K  A  S  K  L  P  P  T  I  P  C  *  L  H  M  Q  R  S  R  *  D  Y  I  V  A  A  I  C  R  I  K  H  L  L  S  L  G  F  E  C  C  N  F  K  L  Y  D  P  W  I  S  K  F  S  R  V  F  A  V  Y  *  H  L  V  I  L  M  C  F  Y  G  P  F  A  I  L  K  K  C  Q  V  S  F  K  H  Y  L  V  E  N  K  Q  S  L  C  L  Y  S  </second_frame>
            <third_frame>   *  A  *  T  S  S  H  G  G  G  E  P  K  Y  E  P  E  S  G  P  *  R  R  R  S  S  T  K  C  D  Y  L  H  Q  *  P  Q  *  K  N  *  A  *  R :   A  E  E  I  D  A  R  C  V  L  T  V  W  *  D  T  G  G  F  S  I  Q  N  P  K  A  *  R  T  G  V  G  S  V  *  *  S  F  F  C  *  Q  C  T  S  P  D  A  G  F  S  F  L  *  *  A  Y   : E  N  T  I  C  K  D  E  I  *  C  C  S  K  S  R  W  Y  F  C  S  P  R  K  K  K  E  A  R  G  *  R :   E  K  E  E  G  P  A  R  C  *  S  S  W  N  G  P  E  S  C  I  C  W  C  L  W  C  S  T  S   : F  L  T  N  T  I  H  G  W  S  *  S  C  S  T  G  G  S  C  S  A  K  *  H  I  V  C  A  E  S  S  S  S  V  Y  S  N  D  A  T  N  A  L  L  P  I  S  R  L  *  G  S  *  D  G  *  G  K  A  W  N  C  F  H  R  I  W  R  *  D  A  I  D  C  C  H  A  G  P  A  R  L  Q  N  Y  R  R  Q  S  H  A  D  Y  I  C  K  E  V  D  K  T  I  L  *  L  L  S  V  E  L  N  I  Y  F  H  *  D  L  S  V  A  I  L  S  F  M  I  L  G  Y  L  S  L  A  V  Y  L  L  C  T  S  T  L  *  F  *  C  A  S  M  D  H  L  P  F  *  K  S  V  K  S  H  L  N  I  I  W  W  R  T  N  N  L  F  A  S  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63952" stop="64084"/>
                    <exon start="64183" stop="64355"/>
                    <exon start="68056" stop="68149"/>
                    <exon start="68460" stop="68548"/>
                    <exon start="69014" stop="69307"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARRRRAAMAEANQNTNPNPAPSGGEVPPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFDEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKKDQQDANQAGMGRNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQSTPMMLQMLFCQYPGFKEVRMVEAKPGIAFIEYGDEMQSTVAMQALQGFKITADNPMLITYAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="82160" PGL_stop="86539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82160" e_stop="82180"/>
            <exon e_start="82970" e_stop="84237"/>
            <exon e_start="85537" e_stop="85766"/>
            <exon e_start="85859" e_stop="85951"/>
            <exon e_start="86094" e_stop="86539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.762"/>
          <exon-intron don_prob="0.941" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.881" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.762">
            <gDNA_exon_boundary e_start="82160" e_stop="82180" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82181" i_stop="82969" i_length="789"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="82970" e_stop="84237" e_length="1268"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84238" i_stop="85536" i_length="1299"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85537" e_stop="85766" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.881" acc_prob="0.996">
            <gDNA_intron_boundary i_start="85767" i_stop="85858" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85859" e_stop="85951" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="85952" i_stop="86093" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="86094" e_stop="86539" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82160" stop="82180"/>
              <exon start="82970" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7562-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83170" stop="84237"/>
              <exon start="85537" stop="85766"/>
              <exon start="85859" stop="85951"/>
              <exon start="86094" stop="86454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7562-3" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83218" stop="83709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAGTAATTTTTTTGTTTT : CAAAAATAATCTCTCTATTTTAGATAGTTATTTGATTTTCTTAAATTTCATATCGATTCAAAATCAGACAAATAAATTGACTCGTACAAAAATTTATCCACTCTTAAATTGATACATCCACCTCTACCAACCTCTATAAACACCTCACCCACCTAACACAACAAATAGGCAAAAAAATAAACATAGTATTATTATATTGACACCAACTTTAACAAAACCAACAAAATTCTTTGGAGGGTATTAAGCCGTCGCTTATCTTCATCTTCTTCCTCTGATTCTGTACATTTTTCTCACCGGAAAACTCATCAGAAATGGATCCAAAGAATCAATTTTCCGATAACTCAGAAGCCCAAACACCTCAAGAAGAACAACAGCAGACACCCATTTTACCGATAGCTTCAATTTCACTTGCTTTATCCACAATCCTTCCAACCCATTTCCTTAATCCTCCTAAAATCTCAACCCTTTTCAACAAACCAAACAAAGTCAAAATCCCAACTCAAGTTTCATCTCTTACAAATCTCTCACTTTCAGCTTCTTCTCTTCCACCTACAAATTCCAAATTCAAGTCCACTATTTCTGCTAACCCTCTTCAGAATACTCTAACTCTTAACCCTCTTCGTCCTTCTGAGCCTTCTAATGCTGCTGGGCTTCGACGAGCGTCGATTGTTTGGTTCCGTAACGATCTTCGTGTTCATGATAATGAGTGTCTTAACGCGGCTCATAATGAGTCCATGTCTGTATTGGCTGTTTACTGTTTTGACCCGAGAGATTATGGAAAATCCTCATCTGGGTTTGATAAAACTGGGCCGTATAGGGCTAGTTTTTTGATTGATTCTGTTGCTGACCTTAGGAAGAATCTACAGGCAAGAGGGTCTGATCTTGTTGTTAGAATTGGGAAGCCGGAGACTGTGTTGGTGGAATTAGCTAAAGCTGTTGGAGCTGAAGCTGTGTATGCTCATAGGGAGGTTTCACATGATGAGGTTAAAGGGGAAGATAAGATTGATGCTGTAATGAAGGATGAGGGTTTGGAGGTGAAGTATTTCTGGGGTAGTACATTGTATCATGTTGATGATTTGCCTTTTAAGTTGGAGCAAATGCCTACGAATTACGGAGGCTTTAGGGAGAAAGTGCAGGGATTGGAGGTAAGGAAGACAATTGAGGCATTGGATCAATTGAGGGGATTGCCTGCTAGAGGTGATGTGGAACCTGGGGAGATTCCTTCGTTGGTTGATTTGGGGCTCAATCCTAGTGCCACCATGGGTCAG : AATGGAAAATCAGCTGCTAATGCTTCCCTTGTGGGAGGAGAGAATGAAGCACTGCAAAGACTTAGAAAATTTGCAGCAGAATGTCAGGCCCAACCCAGTAAGGAAAACAAGGATGGCACAAATGACAGCATATATGGTGCAAACTTTTCTTGCAAAATATCGCCTTGGTTAGCTATGGGATGTCTCTCACCCCGTTCCATGTTTGATGAATTGAAGAAGTCCACTTCAAG : AACGATTTCTGCTGCCTCTGCCAAGAAAGATGGTGGTAGTGGCACTGGGCTGAACTGGCTGATGTACGAGCTGTTATGGAGGGATTTTTTCAG : ATTCATCACCAAGAAATATAGTGCTGCAAAACAAAATAGTGCTGCTCCAGTAACTACTTGCGTAGGAGCTGCTGCTTAACGATGGTATACTCAAAAGGAGAATGAAGGTTTCCTTTTTGTAGCTTGATTTATTTTTTCCGGAAGTTTAGCTGTGGAATGTTAGAGTTGGACTGCCATTGAATTGAAGCATTTTTTCTTTTGACAATAAGTGTTGAGACATAAAAGAATTTGTCGCCATTTCTAGCAAGTCGCTCTACAATCCTTCTTATGCTAGTATTTATATATTTTTGATTTCATCTGTAGTTGAAACAGGTGTGATAACAAACATACCTGTAGTTGAAATATGTGTTCCATGTTTGAGATTACCATCCATCTTGAACCCGCGGAGAGTATCCTTGAGCATCAGATGATTTACTATTGATACTCATTTCAATGTAAACTAGTTC</gDNA_template>
            <first_frame> F  *  *  F  F  C  F  :  Q  K  *  S  L  Y  F  R  *  L  F  D  F  L  K  F  H  I  D  S  K  S  D  K  *  I  D  S  Y  K  N  L  S  T  L  K  L  I  H  P  P  L  P  T  S  I  N  T  S  P  T  *  H  N  K  *  A  K  K  *  T  *  Y  Y  Y  I  D  T  N  F  N  K  T  N  K  I  L  W  R  V  L  S  R  R  L  S  S  S  S  S  S  D  S  V  H  F  S  H  R  K  T  H  Q  K  W  I  Q  R  I  N  F  P  I  T  Q  K  P  K  H  L  K  K  N  N  S  R  H  P  F  Y  R  *  L  Q  F  H  L  L  Y  P  Q  S  F  Q  P  I  S  L  I  L  L  K  S  Q  P  F  S  T  N  Q  T  K  S  K  S  Q  L  K  F  H  L  L  Q  I  S  H  F  Q  L  L  L  F  H  L  Q  I  P  N  S  S  P  L  F  L  L  T  L  F  R  I  L  *  L  L  T  L  F  V  L  L  S  L  L  M  L  L  G  F  D  E  R  R  L  F  G  S  V  T  I  F  V  F  M  I  M  S  V  L  T  R  L  I  M  S  P  C  L  Y  W  L  F  T  V  L  T  R  E  I  M  E  N  P  H  L  G  L  I  K  L  G  R  I  G  L  V  F  *  L  I  L  L  L  T  L  G  R  I  Y  R  Q  E  G  L  I  L  L  L  E  L  G  S  R  R  L  C  W  W  N  *  L  K  L  L  E  L  K  L  C  M  L  I  G  R  F  H  M  M  R  L  K  G  K  I  R  L  M  L  *  *  R  M  R  V  W  R  *  S  I  S  G  V  V  H  C  I  M  L  M  I  C  L  L  S  W  S  K  C  L  R  I  T  E  A  L  G  R  K  C  R  D  W  R  *  G  R  Q  L  R  H  W  I  N  *  G  D  C  L  L  E  V  M  W  N  L  G  R  F  L  R  W  L  I  W  G  S  I  L  V  P  P  W  V  R :   M  E  N  Q  L  L  M  L  P  L  W  E  E  R  M  K  H  C  K  D  L  E  N  L  Q  Q  N  V  R  P  N  P  V  R  K  T  R  M  A  Q  M  T  A  Y  M  V  Q  T  F  L  A  K  Y  R  L  G  *  L  W  D  V  S  H  P  V  P  C  L  M  N  *  R  S  P  L  Q   : E  R  F  L  L  P  L  P  R  K  M  V  V  V  A  L  G  *  T  G  *  C  T  S  C  Y  G  G  I  F  S   : D  S  S  P  R  N  I  V  L  Q  N  K  I  V  L  L  Q  *  L  L  A  *  E  L  L  L  N  D  G  I  L  K  R  R  M  K  V  S  F  L  *  L  D  L  F  F  P  E  V  *  L  W  N  V  R  V  G  L  P  L  N  *  S  I  F  S  F  D  N  K  C  *  D  I  K  E  F  V  A  I  S  S  K  S  L  Y  N  P  S  Y  A  S  I  Y  I  F  L  I  S  S  V  V  E  T  G  V  I  T  N  I  P  V  V  E  I  C  V  P  C  L  R  L  P  S  I  L  N  P  R  R  V  S  L  S  I  R  *  F  T  I  D  T  H  F  N  V  N  *  F </first_frame>
            <second_frame>  F  S  N  F  F  V  F :   K  N  N  L  S  I  L  D  S  Y  L  I  F  L  N  F  I  S  I  Q  N  Q  T  N  K  L  T  R  T  K  I  Y  P  L  L  N  *  Y  I  H  L  Y  Q  P  L  *  T  P  H  P  P  N  T  T  N  R  Q  K  N  K  H  S  I  I  I  L  T  P  T  L  T  K  P  T  K  F  F  G  G  Y  *  A  V  A  Y  L  H  L  L  P  L  I  L  Y  I  F  L  T  G  K  L  I  R  N  G  S  K  E  S  I  F  R  *  L  R  S  P  N  T  S  R  R  T  T  A  D  T  H  F  T  D  S  F  N  F  T  C  F  I  H  N  P  S  N  P  F  P  *  S  S  *  N  L  N  P  F  Q  Q  T  K  Q  S  Q  N  P  N  S  S  F  I  S  Y  K  S  L  T  F  S  F  F  S  S  T  Y  K  F  Q  I  Q  V  H  Y  F  C  *  P  S  S  E  Y  S  N  S  *  P  S  S  S  F  *  A  F  *  C  C  W  A  S  T  S  V  D  C  L  V  P  *  R  S  S  C  S  *  *  *  V  S  *  R  G  S  *  *  V  H  V  C  I  G  C  L  L  F  *  P  E  R  L  W  K  I  L  I  W  V  *  *  N  W  A  V  *  G  *  F  F  D  *  F  C  C  *  P  *  E  E  S  T  G  K  R  V  *  S  C  C  *  N  W  E  A  G  D  C  V  G  G  I  S  *  S  C  W  S  *  S  C  V  C  S  *  G  G  F  T  *  *  G  *  R  G  R  *  D  *  C  C  N  E  G  *  G  F  G  G  E  V  F  L  G  *  Y  I  V  S  C  *  *  F  A  F  *  V  G  A  N  A  Y  E  L  R  R  L  *  G  E  S  A  G  I  G  G  K  E  D  N  *  G  I  G  S  I  E  G  I  A  C  *  R  *  C  G  T  W  G  D  S  F  V  G  *  F  G  A  Q  S  *  C  H  H  G  S   : E  W  K  I  S  C  *  C  F  P  C  G  R  R  E  *  S  T  A  K  T  *  K  I  C  S  R  M  S  G  P  T  Q  *  G  K  Q  G  W  H  K  *  Q  H  I  W  C  K  L  F  L  Q  N  I  A  L  V  S  Y  G  M  S  L  T  P  F  H  V  *  *  I  E  E  V  H  F  K  :  N  D  F  C  C  L  C  Q  E  R  W  W  *  W  H  W  A  E  L  A  D  V  R  A  V  M  E  G  F  F  Q  :  I  H  H  Q  E  I  *  C  C  K  T  K  *  C  C  S  S  N  Y  L  R  R  S  C  C  L  T  M  V  Y  S  K  G  E  *  R  F  P  F  C  S  L  I  Y  F  F  R  K  F  S  C  G  M  L  E  L  D  C  H  *  I  E  A  F  F  L  L  T  I  S  V  E  T  *  K  N  L  S  P  F  L  A  S  R  S  T  I  L  L  M  L  V  F  I  Y  F  *  F  H  L  *  L  K  Q  V  *  *  Q  T  Y  L  *  L  K  Y  V  F  H  V  *  D  Y  H  P  S  *  T  R  G  E  Y  P  *  A  S  D  D  L  L  L  I  L  I  S  M  *  T  S   </second_frame>
            <third_frame>   L  V  I  F  L  F   : S  K  I  I  S  L  F  *  I  V  I  *  F  S  *  I  S  Y  R  F  K  I  R  Q  I  N  *  L  V  Q  K  F  I  H  S  *  I  D  T  S  T  S  T  N  L  Y  K  H  L  T  H  L  T  Q  Q  I  G  K  K  I  N  I  V  L  L  Y  *  H  Q  L  *  Q  N  Q  Q  N  S  L  E  G  I  K  P  S  L  I  F  I  F  F  L  *  F  C  T  F  F  S  P  E  N  S  S  E  M  D  P  K  N  Q  F  S  D  N  S  E  A  Q  T  P  Q  E  E  Q  Q  Q  T  P  I  L  P  I  A  S  I  S  L  A  L  S  T  I  L  P  T  H  F  L  N  P  P  K  I  S  T  L  F  N  K  P  N  K  V  K  I  P  T  Q  V  S  S  L  T  N  L  S  L  S  A  S  S  L  P  P  T  N  S  K  F  K  S  T  I  S  A  N  P  L  Q  N  T  L  T  L  N  P  L  R  P  S  E  P  S  N  A  A  G  L  R  R  A  S  I  V  W  F  R  N  D  L  R  V  H  D  N  E  C  L  N  A  A  H  N  E  S  M  S  V  L  A  V  Y  C  F  D  P  R  D  Y  G  K  S  S  S  G  F  D  K  T  G  P  Y  R  A  S  F  L  I  D  S  V  A  D  L  R  K  N  L  Q  A  R  G  S  D  L  V  V  R  I  G  K  P  E  T  V  L  V  E  L  A  K  A  V  G  A  E  A  V  Y  A  H  R  E  V  S  H  D  E  V  K  G  E  D  K  I  D  A  V  M  K  D  E  G  L  E  V  K  Y  F  W  G  S  T  L  Y  H  V  D  D  L  P  F  K  L  E  Q  M  P  T  N  Y  G  G  F  R  E  K  V  Q  G  L  E  V  R  K  T  I  E  A  L  D  Q  L  R  G  L  P  A  R  G  D  V  E  P  G  E  I  P  S  L  V  D  L  G  L  N  P  S  A  T  M  G  Q  :  N  G  K  S  A  A  N  A  S  L  V  G  G  E  N  E  A  L  Q  R  L  R  K  F  A  A  E  C  Q  A  Q  P  S  K  E  N  K  D  G  T  N  D  S  I  Y  G  A  N  F  S  C  K  I  S  P  W  L  A  M  G  C  L  S  P  R  S  M  F  D  E  L  K  K  S  T  S  R :   T  I  S  A  A  S  A  K  K  D  G  G  S  G  T  G  L  N  W  L  M  Y  E  L  L  W  R  D  F  F  R :   F  I  T  K  K  Y  S  A  A  K  Q  N  S  A  A  P  V  T  T  C  V  G  A  A  A  *  R  W  Y  T  Q  K  E  N  E  G  F  L  F  V  A  *  F  I  F  S  G  S  L  A  V  E  C  *  S  W  T  A  I  E  L  K  H  F  F  F  *  Q  *  V  L  R  H  K  R  I  C  R  H  F  *  Q  V  A  L  Q  S  F  L  C  *  Y  L  Y  I  F  D  F  I  C  S  *  N  R  C  D  N  K  H  T  C  S  *  N  M  C  S  M  F  E  I  T  I  H  L  E  P  A  E  S  I  L  E  H  Q  M  I  Y  Y  *  Y  S  F  Q  C  K  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83245" stop="84237"/>
                    <exon start="85537" stop="85766"/>
                    <exon start="85859" stop="85951"/>
                    <exon start="86094" stop="86172"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTFFSPENSSEMDPKNQFSDNSEAQTPQEEQQQTPILPIASISLALSTILPTHFLNPPKISTLFNKPNKVKIPTQVSSLTNLSLSASSLPPTNSKFKSTISANPLQNTLTLNPLRPSEPSNAAGLRRASIVWFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVDLGLNPSATMGQNGKSAANASLVGGENEALQRLRKFAAECQAQPSKENKDGTNDSIYGANFSCKISPWLAMGCLSPRSMFDELKKSTSRTISAASAKKDGGSGTGLNWLMYELLWRDFFRFITKKYSAAKQNSAAPVTTCVGAAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0278J12.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86309" stop="86503"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIKEFVAISSKSLYNPSYASIYIFLISSVVETGVITNIPVVEICVPCLRLPSILNPRRVSLSIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 97 chains have been computed
$ 
$ memory statistics:
$ 65176 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 9310 bytes was the average size of a spliced alignment
$ 8136 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2712 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 97 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-20 08:43:28
-->
