<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-02 15:45:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="57271" stop="58526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57571" g_stop="58226" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57571" e_stop="58226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGCGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGCTGTGGCTCCCCACATGGATGCCTCATTGGAAATAGGCATGTTTCCTCGATTGACTACAGGGCCTATAATGACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATTTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTACTACACAAGATGGGCATAGTAGAACAATTTGGCGTCGAGTTTGTGACATATCAATTTCAGGGGAACGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACAAGCAGCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATACCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTAAGCCTAGAGCAAGGCAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCATGCATTATCTAGGTATGCCACCCAGCTTTACTTCAGTCCACAAGAGCGGATTCGCCATTTCGTGAAAGGGTTGAGGTCAGATTTACGGATTTCAGCCTTACAGGTAGCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCAC-AGCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="59397" stop="58467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59097" g_stop="58767" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59097" e_stop="58767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCCAACATTACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTTCTCTCCATAAAAGTCACAGGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAACAATACAGAACCCATGTAATCACAAATCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="58497" stop="59755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58797" g_stop="59456" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58797" e_stop="59456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCCTGTGACTTTTATGGAGAGAAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAATGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTTCAGTTCGTATCATCTCCTTCCTTCATGCTAAGAGAATGGTTA-TAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCAATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACATTCCTGGTATGCCACCGGATATGGATATTGACTTTTGTATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTAAGTTAAGAGAGTTAAAGGCCCAACTTACAGAGTTGTTAAGCAAAGGCCT-AATAGACCAAGTGCATCTCCTTGGA</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGTGG-GAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGG-TGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="61192" stop="60006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60892" g_stop="60306" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60892" e_stop="60306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTACATGAATAGTGTGAACCAAATCATCGACGTGGGGTACACATACCCTTCCCTTAATTCTCAAGACACATTCCTCATTGATTTTTGCTTCTTTAGCCTCTCCTCGCAATACCTTATCTCGGATCCGGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAAAGTCTGAACCTGTCTAGCCAATGGGCGTCTAGAAACCTGTAAGTGGGCTAGGCTTCCCATGCTCCTTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCATCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACTGCCGCTAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACTTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="61192" stop="60006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60892" g_stop="60306" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60892" e_stop="60306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTACATGAATAGTGTGAACCAAATCATCGACGTGGGGTACACATACCCTTCCCTTAATTCTCAAGACACATTCCTCATTGATTTTTGCTTCTTTAGCCTCTCCTCGCAATACCTTATCTCGGATCCGGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAAAGTCTGAACCTGTCTAGCCAATGGGCGTCTAGAAACCTGTAAGTGGGCTAGGCTTCCCATGCTCCTTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCATCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACTGCCGCTAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACTTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="61192" stop="60039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60892" g_stop="60339" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60892" e_stop="60339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTACATGAATAGTGTGAACCAAATCATCGACGTGGGGTACACATACCCTTCCCTTAATTCTCAAGACACATTCCTCATTGATTTTTGCTTCTTTAGCCTCTCCTCGCAATACCTTATCTCGGATCCGGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAAAGTCTGAACCTGTCTAGCCAATGGGCGTCTAGAAACCTGTAAGTGGGCTAGGCTTCCCATGCTCCTTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCATCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACTGCCGCTAACTCCAAATCGTGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="61637" stop="60496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61337" g_stop="60796" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61337" e_stop="60796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATGCAATATTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCTATATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACTTATCTATCGTCTTTGGAAGACCAACCACGAAGTACATTGAAATTCTTTCCCACTTCCATTCAGGAATGGGCATTTTTTGAAGTATCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAGCTATGAGCCTCTACATGAATAGTGTGAACCAAATCATCGACGTGGGGTACACATAC-CCTTCCCTTAATTCTCAAGACACATTCCTCATTGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358519" ref_strand="+" ref_description="SGN-E358519 [cLHT-22-G5]">
      <seq>aaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgaccttgatttgagtaaaatggcttcgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagtagaggcttacttgaaggatttgtttgcgatatatgtaagtaagtatggaaaaggttccaaaagtcaaccatcttcatctgactcatctgattcttctggtagtggtatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="72308" stop="71280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72008" g_stop="71580" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E358519" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72008" e_stop="71580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAATATATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAGATATTGGCGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGTATTTC</genome_strand>
        <mrna_strand>AAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAAGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550684" ref_strand="+" ref_description="SGN-E550684 [TUS-50-B11]">
      <seq>agaatgtgataagatgttgtctttagatgtgcctactaggtggaattccacctatttgatgttagacacagcagaaaagtttgagaaggcttttgagaggtttgatctttatgatggtaattttcattcttttcttgctactgatgtttgtgaagatggaagtatcgcagggtcaattcaatatgaagattgggctaatgtgaggaatgtcacaaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgacgttgatttgagtaaaatggctttgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagcagaggcttacttgagggatttgtttgcgatatatgtaagtaagtatggaaaaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="72521" stop="71332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72221" g_stop="71632" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E550684" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72221" e_stop="71632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGTAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATGTGAAGATTGGGTTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAATATATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAGATATTGGCGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</genome_strand>
        <mrna_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTCATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACGTTGATTTGAGTAAAATGGCTTTGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGCAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688349" ref_strand="+" ref_description="SGN-E688349 [t3_tus_50_b11]">
      <seq>agaatgtgataagatgttgtctttagatgtgcctactaggtggaattccacctatttgatgttagacacagcagaaaagtttgagaaggcttttgagaggtttgatctttatgatggtaattttcattcttttcttgctactgatgtttgtgaagatggaagtatcgcagggtcaattcaatatgaagattgggctaatgtgaggaatgtcacaaagtttcttgaaaaattttatgaactcactttgaaagtttcaggttcacggtatgttacttgtaatgttcattttgaagatatatgtgaacttgatgcttatttgaaattatgtgtagcaagtgatgacgttgatttgagtaaaatggctttgggaatgaaagaaaaattcaagaaatattgggggactcctgaaaaaatgaacaaaatgatttttattgcttctgttttggatcctcgcaataaatttgtctatgttagttttgctcttgaagaattacttggggaagaaacgggaaatgtagtgaatacgaaagcagaggcttacttgagggatttgtttgcgatatatgtaagtaagtatggaaaaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="72521" stop="71332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72221" g_stop="71632" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E688349" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72221" e_stop="71632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGTAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATGTGAAGATTGGGTTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAATATATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAGATATTGGCGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</genome_strand>
        <mrna_strand>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGCAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTCATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATATGAAGATTGGGCTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAAGATATATGTGAACTTGATGCTTATTTGAAATTATGTGTAGCAAGTGATGACGTTGATTTGAGTAAAATGGCTTTGGGAATGAAAGAAAAATTCAAGAAATATTGGGGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGCAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="96258" stop="117919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96558" g_stop="96982" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96558" e_stop="96982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAAC-AAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGAAGCAAAATCACCAATTTCGCAGCTACTGTTCACGATAGCAAAACTGAAGCTGCAGGCCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAATATAATATGCTGTCCAAAAATCAGCTCAATCAGACAATAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTATTAGGGCTGAATTTTTTACTGCGAAAAACTGCTCTTTTTTTTCTCTTTTGGCTGCTAAAAAACTCTCTATGTATTTA</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCT-CTCTTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="101409" stop="100438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101109" g_stop="100686" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101109" e_stop="100686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAATCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTAAAATATTGTTCTCCAAAATTGGACACAAAAC-AAGTGTCAAACAACAAGCAACAACGAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACTAATTTCGCAGCTACTATTCACGACAGCAAAACTGAAGCTTCAGGCCACCAAATCCAACTATGTCAGTTCCTAATTAAAGATTGAGATGAAGATAATATGTTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGAAATCGCAATTTGAAGTTGGCTATTAGGGCT-GAATTTTGACTGCGAAAAAACTGCTCTTTTTCTCTCTTTTGGCTGCTAAAAAACTCTCTGTGTATTTG</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCG-AATTTCTCTCTTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="112571" stop="113471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112871" g_stop="113171" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112871" e_stop="113171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTTCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGATATTCAGTCCTGTTATTCGGCAGGAAACTATTCGCCTGGTACTGTCACTCGCCGTGCTCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACATCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477983" ref_strand="+" ref_description="SGN-E477983 [cSTD-2-H11]">
      <seq>gttaaatcccatttttaagtcatgctaagagtcctcaacgaaaagctgaagcgcctctgttttagtctccggtggccaatacgctgccgttcaaagagcaaaatcaaaattactgtgcaaaaactgggaaaatccaattcaagttctcattctcaaattgatccatcaaattcaaatgggtctgcagcaattcatcccagtaatggcgaattgaatcgttctaaaactggacgaacaatacgcgtagctacatttaatgctgcccttttctccatggcaccggcactcccaaagagtagtactgatagatcagctagttttgattttgaaaatgacgaattttcaaattcaaaagctggtaaaatgagtgattactataatttaagagtgaaatcagcgaatgatcggcctaagagtatactcaaacaatctcctcttcatcccacgaatgaaacggatacaatattgttgaaaagacaaagtttctcgaaatcgaagttaagggtttcgattaatttaccagataacgaaatatctctgaagaaaagtgggcaattgaggattttgggatgtgatagtgagaggtattcggggagtgggatatgtagaggaaaagctccgttaaggtctactgtgagtatgcctcggattgattgtcagagttatagaattacgagaagtgttcttgaagttttgagagaattgaatgcagatattttggctttgcaagatgttaaagcagaagaggagaaaggtatgaagccgttatcggatttggctgatgctttagggatgaattatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="125405" stop="126811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125705" g_stop="126510" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E477983" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125705" e_stop="126510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAATCCAATTTCTAAGTCATGCTTAGAGTCCTCAACGAAAAGCTGAAGCGCCTCTGTTTTAGTCTCCGGTGGCCAATACGCTGCCGTTCAAAGAACAAAATCAAAATTACTGTGAAAAAACTGGGAAAATCAAATTCAAGTTCTCATTCACAAATTGATCCGTCAAATTCAAATGGGTCAGCAGCAATTCATCCAAGTAATGGCGAATTGAATCGTTCTAAAACTGGACGAACCATACGAGTAGCTACATTTAATGCTGCGCTTTTCTCCATGGCGCCCGCACTTCCAAGGAGTAGTTCTGATAGATCAGCTAGTTTTGATTTTGAAAATGATGAATTTTCGAATTCAAAAGCTAGTAAAATGAGTGATTACTATAATTTAAGAGTGAAATCAGCGAATGATCGACCTAAGAGTATACTCAAACAATCACCTCTTCATCCGACGAAAGAAACAGATACGCTTTTGTTGAAAAGACAAAATTTCTCGAAATCGAAGTTAAGGGTTTCGATTAATTTACCAGATAATGAAATATCTCTGAAGAAAAGTGGGCAATTGAGGATTTTGGGATGTGATAGTGAGAGGTTTTCAGGGAGTGGGATATGTAGAGGAAAATCTCCGTTAAGGTCTACTGTGAGTATGCCTCGAATTGATTGTCAAAGCTATAGAATTACGAGAAGTGTTCTTGAAGTATTGAGAGAATTGAATGCGGATATTCTGGCTTTGCAAGATGTTAAAGCAGAGGAAGAGAAAGGTATGAAGCCGTTATCGGATTTAGCTGATGCTTTGGGGATGAATTATGTATT</genome_strand>
        <mrna_strand>GTTAAATCCCATTTTTAAGTCATGCTAAGAGTCCTCAACGAAAAGCTGAAGCGCCTCTGTTTTAGTCTCCGGTGGCCAATACGCTGCCGTTCAAAGAGCAAAATCAAAATTACTGTGCAAAAACTGGGAAAATCCAATTCAAGTTCTCATTCTCAAATTGATCCATCAAATTCAAATGGGTCTGCAGCAATTCATCCCAGTAATGGCGAATTGAATCGTTCTAAAACTGGACGAACAATACGCGTAGCTACATTTAATGCTGCCCTTTTCTCCATGGCACCGGCACTCCCAAAGAGTAGTACTGATAGATCAGCTAGTTTTGATTTTGAAAATGACGAATTTTCAAATTCAAAAGCTGGTAAAATGAGTGATTACTATAATTTAAGAGTGAAATCAGCGAATGATCGGCCTAAGAGTATACTCAAACAATCTCCTCTTCATCCCACGAATGAAACGGATACAATATTGTTGAAAAGACAAAGTTTCTCGAAATCGAAGTTAAGGGTTTCGATTAATTTACCAGATAACGAAATATCTCTGAAGAAAAGTGGGCAATTGAGGATTTTGGGATGTGATAGTGAGAGGTATTCGGGGAGTGGGATATGTAGAGGAAAAGCTCCGTTAAGGTCTACTGTGAGTATGCCTCGGATTGATTGTCAGAGTTATAGAATTACGAGAAGTGTTCTTGAAGTTTTGAGAGAATTGAATGCAGATATTTTGGCTTTGCAAGATGTTAAAGCAGAAGAGGAGAAAGGTATGAAGCCGTTATCGGATTTGGCTGATGCTTTAGGGATGAATTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452865" ref_strand="+" ref_description="SGN-E452865 [cSTS-18-O3]">
      <seq>gttaaatcccatttttaagtcatgctaagagtcctcaacgaaaagctgaagcgcctctgttttagtctccggtggccaatacgctgccgttcaaagagcaaaatcaaaattactgtgcaaaaactgggaaaatccaattcaagttctcattctcaaattgatccatcaaattcaaatgggtctgcagcaattcatcccagtaatggcgaattgaatcgttctaaaactggacgaacaatacgcgtagctacatttaatgctgcccttttctccatggcaccggcactcccaaagagtagtactgatagatcagctagttttgattttgaaaatgacgaattttcaaattcaaaagctggtaaaatgagtgattactataatttaagagtgaaatcagcgaatgatcggcctaagagtatactcaaacaatctcctcttcatcccacgaatgaaacggatacaatattgttgaaaagacaaagtttctcgaaatcgaagttaagggtttcgattaatttaccagataacgaaatatctctgaagaaaagtgggcaattgaggattttgggatgtgatagtgagaggtattcggggagtgggatatgtagaggaaaagctccgttaaggtctactgtgagtatgcctcggattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="125405" stop="126659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125705" g_stop="126359" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E452865" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125705" e_stop="126359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAATCCAATTTCTAAGTCATGCTTAGAGTCCTCAACGAAAAGCTGAAGCGCCTCTGTTTTAGTCTCCGGTGGCCAATACGCTGCCGTTCAAAGAACAAAATCAAAATTACTGTGAAAAAACTGGGAAAATCAAATTCAAGTTCTCATTCACAAATTGATCCGTCAAATTCAAATGGGTCAGCAGCAATTCATCCAAGTAATGGCGAATTGAATCGTTCTAAAACTGGACGAACCATACGAGTAGCTACATTTAATGCTGCGCTTTTCTCCATGGCGCCCGCACTTCCAAGGAGTAGTTCTGATAGATCAGCTAGTTTTGATTTTGAAAATGATGAATTTTCGAATTCAAAAGCTAGTAAAATGAGTGATTACTATAATTTAAGAGTGAAATCAGCGAATGATCGACCTAAGAGTATACTCAAACAATCACCTCTTCATCCGACGAAAGAAACAGATACGCTTTTGTTGAAAAGACAAAATTTCTCGAAATCGAAGTTAAGGGTTTCGATTAATTTACCAGATAATGAAATATCTCTGAAGAAAAGTGGGCAATTGAGGATTTTGGGATGTGATAGTGAGAGGTTTTCAGGGAGTGGGATATGTAGAGGAAAATCTCCGTTAAGGTCTACTGTGAGTATGCCTCGAATTGATT</genome_strand>
        <mrna_strand>GTTAAATCCCATTTTTAAGTCATGCTAAGAGTCCTCAACGAAAAGCTGAAGCGCCTCTGTTTTAGTCTCCGGTGGCCAATACGCTGCCGTTCAAAGAGCAAAATCAAAATTACTGTGCAAAAACTGGGAAAATCCAATTCAAGTTCTCATTCTCAAATTGATCCATCAAATTCAAATGGGTCTGCAGCAATTCATCCCAGTAATGGCGAATTGAATCGTTCTAAAACTGGACGAACAATACGCGTAGCTACATTTAATGCTGCCCTTTTCTCCATGGCACCGGCACTCCCAAAGAGTAGTACTGATAGATCAGCTAGTTTTGATTTTGAAAATGACGAATTTTCAAATTCAAAAGCTGGTAAAATGAGTGATTACTATAATTTAAGAGTGAAATCAGCGAATGATCGGCCTAAGAGTATACTCAAACAATCTCCTCTTCATCCCACGAATGAAACGGATACAATATTGTTGAAAAGACAAAGTTTCTCGAAATCGAAGTTAAGGGTTTCGATTAATTTACCAGATAACGAAATATCTCTGAAGAAAAGTGGGCAATTGAGGATTTTGGGATGTGATAGTGAGAGGTATTCGGGGAGTGGGATATGTAGAGGAAAAGCTCCGTTAAGGTCTACTGTGAGTATGCCTCGGATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424641" ref_strand="+" ref_description="SGN-E424641 [STM-43-L4]">
      <seq>gttaaatcccatttttaagtcatgctaagagtcctcaacgaaaagctgaagcgcctctgttttagtctccggtggccaatacgctgccgttcaaagagcaaaatcaaaattactgtgcaaaaactgggaaaatccaattcaagttctcattctcaaattgatccatcaaattcaaatgggtctgcagcaattcatcccagtaatggcgaattgaatcgttctaaaactggacgaacaatacgcgtagctacatttaatgctgcccttttctccatggcaccggcactcccaaagagtagtactgatagatcagctagttttgattttgaaaatgacgaattttcaaattcaaaagctggtaaaatgagtgattactataatttaagagtgaaatcagcgaatgatcggcctaagagtatactcaaacaatctcctcttcatcccacgaatgaaacggatacaatattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="125405" stop="126474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125705" g_stop="126174" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E424641" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125705" e_stop="126174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAATCCAATTTCTAAGTCATGCTTAGAGTCCTCAACGAAAAGCTGAAGCGCCTCTGTTTTAGTCTCCGGTGGCCAATACGCTGCCGTTCAAAGAACAAAATCAAAATTACTGTGAAAAAACTGGGAAAATCAAATTCAAGTTCTCATTCACAAATTGATCCGTCAAATTCAAATGGGTCAGCAGCAATTCATCCAAGTAATGGCGAATTGAATCGTTCTAAAACTGGACGAACCATACGAGTAGCTACATTTAATGCTGCGCTTTTCTCCATGGCGCCCGCACTTCCAAGGAGTAGTTCTGATAGATCAGCTAGTTTTGATTTTGAAAATGATGAATTTTCGAATTCAAAAGCTAGTAAAATGAGTGATTACTATAATTTAAGAGTGAAATCAGCGAATGATCGACCTAAGAGTATACTCAAACAATCACCTCTTCATCCGACGAAAGAAACAGATACGCTTTTGTT</genome_strand>
        <mrna_strand>GTTAAATCCCATTTTTAAGTCATGCTAAGAGTCCTCAACGAAAAGCTGAAGCGCCTCTGTTTTAGTCTCCGGTGGCCAATACGCTGCCGTTCAAAGAGCAAAATCAAAATTACTGTGCAAAAACTGGGAAAATCCAATTCAAGTTCTCATTCTCAAATTGATCCATCAAATTCAAATGGGTCTGCAGCAATTCATCCCAGTAATGGCGAATTGAATCGTTCTAAAACTGGACGAACAATACGCGTAGCTACATTTAATGCTGCCCTTTTCTCCATGGCACCGGCACTCCCAAAGAGTAGTACTGATAGATCAGCTAGTTTTGATTTTGAAAATGACGAATTTTCAAATTCAAAAGCTGGTAAAATGAGTGATTACTATAATTTAAGAGTGAAATCAGCGAATGATCGGCCTAAGAGTATACTCAAACAATCTCCTCTTCATCCCACGAATGAAACGGATACAATATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317134" ref_strand="+" ref_description="SGN-E317134 [cTOA-27-H24]">
      <seq>tcaaatccaatttctaagtcatgcttagagtcctcaacgaaaagctgaagcgcctctgttttagtctccggtggccaatacgctgccgttcaaagaacaaaatcaaaattactgtgaaaaaactgggaaaatcaaattcaagttctcattcacaaattgatccgtcaaattcaaatgggtcagcagcaattcatccaagtaatggcgaattgaatcgttctaaaactggacgaaccatacgagtagctacatttaatgctgcgcttttctccatggcgcccgcacttccaaggagtagttctgatagatcagctagttttgattttgaaaatgatgaattttcgaattcaaaagctagtaaaatgagtgattactataatttaagagtgaaatcagcgaatgatcgacctaagagtatactcaaacaatcacctcttcatccgacgaaagaaacagatacgcttttgttgaaaagacaaaatttctcgaaatcgaagttaagggtttcgattaatttaccagataatgaaatatctctgaagaaaagtgggcaattgaggattttgggatgtgatagtgagaggttttcagggagtgggatatgtagaggaaaatctccgttaaggtctactgtgagtatgcctcgaattgattgtcaaagctatagaattacgagaagtgttcttgaagtattgagagaattgaatgcggatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="125406" stop="126722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125706" g_stop="126422" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E317134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125706" e_stop="126422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCCAATTTCTAAGTCATGCTTAGAGTCCTCAACGAAAAGCTGAAGCGCCTCTGTTTTAGTCTCCGGTGGCCAATACGCTGCCGTTCAAAGAACAAAATCAAAATTACTGTGAAAAAACTGGGAAAATCAAATTCAAGTTCTCATTCACAAATTGATCCGTCAAATTCAAATGGGTCAGCAGCAATTCATCCAAGTAATGGCGAATTGAATCGTTCTAAAACTGGACGAACCATACGAGTAGCTACATTTAATGCTGCGCTTTTCTCCATGGCGCCCGCACTTCCAAGGAGTAGTTCTGATAGATCAGCTAGTTTTGATTTTGAAAATGATGAATTTTCGAATTCAAAAGCTAGTAAAATGAGTGATTACTATAATTTAAGAGTGAAATCAGCGAATGATCGACCTAAGAGTATACTCAAACAATCACCTCTTCATCCGACGAAAGAAACAGATACGCTTTTGTTGAAAAGACAAAATTTCTCGAAATCGAAGTTAAGGGTTTCGATTAATTTACCAGATAATGAAATATCTCTGAAGAAAAGTGGGCAATTGAGGATTTTGGGATGTGATAGTGAGAGGTTTTCAGGGAGTGGGATATGTAGAGGAAAATCTCCGTTAAGGTCTACTGTGAGTATGCCTCGAATTGATTGTCAAAGCTATAGAATTACGAGAAGTGTTCTTGAAGTATTGAGAGAATTGAATGCGGATATTC</genome_strand>
        <mrna_strand>TCAAATCCAATTTCTAAGTCATGCTTAGAGTCCTCAACGAAAAGCTGAAGCGCCTCTGTTTTAGTCTCCGGTGGCCAATACGCTGCCGTTCAAAGAACAAAATCAAAATTACTGTGAAAAAACTGGGAAAATCAAATTCAAGTTCTCATTCACAAATTGATCCGTCAAATTCAAATGGGTCAGCAGCAATTCATCCAAGTAATGGCGAATTGAATCGTTCTAAAACTGGACGAACCATACGAGTAGCTACATTTAATGCTGCGCTTTTCTCCATGGCGCCCGCACTTCCAAGGAGTAGTTCTGATAGATCAGCTAGTTTTGATTTTGAAAATGATGAATTTTCGAATTCAAAAGCTAGTAAAATGAGTGATTACTATAATTTAAGAGTGAAATCAGCGAATGATCGACCTAAGAGTATACTCAAACAATCACCTCTTCATCCGACGAAAGAAACAGATACGCTTTTGTTGAAAAGACAAAATTTCTCGAAATCGAAGTTAAGGGTTTCGATTAATTTACCAGATAATGAAATATCTCTGAAGAAAAGTGGGCAATTGAGGATTTTGGGATGTGATAGTGAGAGGTTTTCAGGGAGTGGGATATGTAGAGGAAAATCTCCGTTAAGGTCTACTGTGAGTATGCCTCGAATTGATTGTCAAAGCTATAGAATTACGAGAAGTGTTCTTGAAGTATTGAGAGAATTGAATGCGGATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409529" ref_strand="+" ref_description="SGN-E409529 [PPI-14-G14]">
      <seq>aaaaaactgggaaaatccaattcaagttctcattctcaaattgatccatcaaattcaaatgggtctgcagcaattcatcccagtaatggcgaattgaatcgttctaaaactggacgaacaatacgcgtagctacatttaatgctgcccttttctccatggcaccggcacttccaaagagtagtactgatagatcagctagttttgattttgaaaatgacgaattttcaaattcaaaagctggtaaaatgagtgattactataatttaagagtgaaatcagcgaatgatcagcctaagagtatactcaaacaatctcctcttcataccacgaaagaaacggatacgctattgttgaaaagacaaagtttctcgaaatcgaagttaagggtttcgattaatttaccagataatgaaatatctctgaagaaaagtgggcaattgaggattttgggatgtgatagtgagaggtattcggggagtgggatatgtagaagaaaagctccgttaaggtctactgtgagtatgcctcgggttgattgtcagagttatagaattacgagaagtgttcttgaagttttgagagaattgaatgcggatattttggctttgcaagatgttaaagcagaagaagagaaggtatgaagccgttatcggatttggctgatgctttagggatgaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="125522" stop="126806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125822" g_stop="126506" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E409529" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125822" e_stop="126506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTGGGAAAATCAAATTCAAGTTCTCATTCACAAATTGATCCGTCAAATTCAAATGGGTCAGCAGCAATTCATCCAAGTAATGGCGAATTGAATCGTTCTAAAACTGGACGAACCATACGAGTAGCTACATTTAATGCTGCGCTTTTCTCCATGGCGCCCGCACTTCCAAGGAGTAGTTCTGATAGATCAGCTAGTTTTGATTTTGAAAATGATGAATTTTCGAATTCAAAAGCTAGTAAAATGAGTGATTACTATAATTTAAGAGTGAAATCAGCGAATGATCGACCTAAGAGTATACTCAAACAATCACCTCTTCATCCGACGAAAGAAACAGATACGCTTTTGTTGAAAAGACAAAATTTCTCGAAATCGAAGTTAAGGGTTTCGATTAATTTACCAGATAATGAAATATCTCTGAAGAAAAGTGGGCAATTGAGGATTTTGGGATGTGATAGTGAGAGGTTTTCAGGGAGTGGGATATGTAGAGGAAAATCTCCGTTAAGGTCTACTGTGAGTATGCCTCGAATTGATTGTCAAAGCTATAGAATTACGAGAAGTGTTCTTGAAGTATTGAGAGAATTGAATGCGGATATTCTGGCTTTGCAAGATGTTAAAGCAGAGGAAGAGAAAGGTATGAAGCCGTTATCGGATTTAGCTGATGCTTTGGGGATGAATTATG</genome_strand>
        <mrna_strand>AAAAAACTGGGAAAATCCAATTCAAGTTCTCATTCTCAAATTGATCCATCAAATTCAAATGGGTCTGCAGCAATTCATCCCAGTAATGGCGAATTGAATCGTTCTAAAACTGGACGAACAATACGCGTAGCTACATTTAATGCTGCCCTTTTCTCCATGGCACCGGCACTTCCAAAGAGTAGTACTGATAGATCAGCTAGTTTTGATTTTGAAAATGACGAATTTTCAAATTCAAAAGCTGGTAAAATGAGTGATTACTATAATTTAAGAGTGAAATCAGCGAATGATCAGCCTAAGAGTATACTCAAACAATCTCCTCTTCATACCACGAAAGAAACGGATACGCTATTGTTGAAAAGACAAAGTTTCTCGAAATCGAAGTTAAGGGTTTCGATTAATTTACCAGATAATGAAATATCTCTGAAGAAAAGTGGGCAATTGAGGATTTTGGGATGTGATAGTGAGAGGTATTCGGGGAGTGGGATATGTAGAAGAAAAGCTCCGTTAAGGTCTACTGTGAGTATGCCTCGGGTTGATTGTCAGAGTTATAGAATTACGAGAAGTGTTCTTGAAGTTTTGAGAGAATTGAATGCGGATATTTTGGCTTTGCAAGATGTTAAAGCAGAAGAAGAG-AAGGTATGAAGCCGTTATCGGATTTGGCTGATGCTTTAGGGATGAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424642" ref_strand="+" ref_description="SGN-E424642 [STM-43-L4]">
      <seq>tatatatagttaagctcaaactgctttagatatgttgttcaattacaagatttgtcatataaattatgtcatctattccttttgcatcttgctttctaaagcaaggtgtaatgaagtggaaacaacacttttcccaccctaaaagatatctttctttacaaagaacagagaagaaagcataaagccatacatcaatcacaataattaacaacctgcctatgtttcattttcatgcgtctattttccatacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="128886" stop="128034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128587" g_stop="128334" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E424642" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128587" e_stop="128334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGGTAGTTGAGCTCAAACTGCTTTAGATATGTAGTTCAATCACAAGTTGTGTCATATAAATTATGTCATCTATTCCTTTTACATCTTCCTTTTCTAAAGCAAGGTGTAATGAAGTGGAAACAACACTTTTCCCACCCTAAAAGATATCTTTCTTTACAAAGAACAGAGAAGAAAGCATAAAGCCATACATCAATCACAATAATTAACAATCTACCTATGTTTACTTTTCATGTGTCTATTTTCCATATACC</genome_strand>
        <mrna_strand>TATATATAGTTAAGCTCAAACTGCTTTAGATATGTTGTTCAATTACAAGATTTGTCATATAAATTATGTCATCTATTCCTTTTGCATCTTGCT-TTCTAAAGCAAGGTGTAATGAAGTGGAAACAACACTTTTCCCACCCTAAAAGATATCTTTCTTTACAAAGAACAGAGAAGAAAGCATAAAGCCATACATCAATCACAATAATTAACAACCTGCCTATGTTTCATTTTCATGCGTCTATTTTCCATACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324159" ref_strand="+" ref_description="SGN-E324159 [cTOC-4-G10]">
      <seq>gttttttttagaaatctgtttatgtatttgaccaaataaatacatactattcttctttcagtctcaatttatatggtatatatgtccgtttgtttcacgcaagaatgtcactttaactttaaaattctccttttttaagtgagatgaatcaatgagtacaaatgaaaatatgtgatccatgatacaacaaacactcaaatgtcttaaatttgaggatgagaatcagatcgaatgtagtttcaaacgacaacatgaattgtgtcaactctctctgataaagtaaatttcagtacgaaagatgaatcgatgaaggctaaggtatttcatgatgcattgatagcagcctggatttgttccaaagttcttcctttggtttcaggtactatttttatcacaaataatatggacagtgcattcactgcagcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="132506" stop="133529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132800" g_stop="133229" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E324159" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132800" e_stop="133229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTTTAGAAATCTGTTTATGTATTTGACCAAATAAATACATACTATTCTTCTTTCAGTCTCAATTTATATGGTATATATGTCCGTTTGTTTCACGCAAGAATGTCACTTTAACTTTAAAATTCTCCTTTTTTAAGTGAGATGAATCAATGAGTACAAATGAAAATATGTGATCCATGATACAACAAACACTCAAATGTCTTAAATTTGAGGATGAGAATCAGATCGAATGTAGTTTCAAACGACAACATGAATTGTGTCAACTCTCTCTGATAAAGTAAATTTCAGTACGAAAGATGAATCGATGAAGGCTAAGGTATTTCATGATGCATTGATAGCAGCCTGGATTTGTTCCAAAGTTCTTCCTTTGGTTTCAGGTACTATTTTTATCACAAATAATATGGACAGTGCATTCACTGCAGCATACA</genome_strand>
        <mrna_strand>GTTTTTTTTAGAAATCTGTTTATGTATTTGACCAAATAAATACATACTATTCTTCTTTCAGTCTCAATTTATATGGTATATATGTCCGTTTGTTTCACGCAAGAATGTCACTTTAACTTTAAAATTCTCCTTTTTTAAGTGAGATGAATCAATGAGTACAAATGAAAATATGTGATCCATGATACAACAAACACTCAAATGTCTTAAATTTGAGGATGAGAATCAGATCGAATGTAGTTTCAAACGACAACATGAATTGTGTCAACTCTCTCTGATAAAGTAAATTTCAGTACGAAAGATGAATCGATGAAGGCTAAGGTATTTCATGATGCATTGATAGCAGCCTGGATTTGTTCCAAAGTTCTTCCTTTGGTTTCAGGTACTATTTTTATCACAAATAATATGGACAGTGCATTCACTGCAGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376066" ref_strand="+" ref_description="SGN-E376066 [TUS-40-K22]">
      <seq>tttttttagaaatctgtttatgtatttgaccaaataaatacatactattcttctttcagtctcaatttatatggtatatatgtccgtttgtttcacgcaagaatgtcactttaactttaaaattctccttttttaagtgagatgaatcaatgagtacaaatgaaaatatgtgatccatgatacaacaaacactcaaatgtcttaaatttgaggatgagaatcagatcgaatgtagtttcaaacgacaacatgaattgtgtcaactctctctgataaagtaaatttcagtacgaaagatgaatcgatgaaggctaaggtatttcatgatgcattgatagcagcctggatttgttccaaagttcttcctttggtttcaggtactatttttatcacaaataatatggacagtgcattcactgcagcatacagaacgaacgtacctgaaaaacagttaaaattaactaatgttagttgaaatatctcatctttagaaatgatatttgtgataatgattgacgactgtttagttaccaaaagaattccaggtcatgaggaagttgaaagtgtaggagcacgcccatgctccgaaccaattcactagtgttgcaaggctcccagcagcacctttaatatttataggatatatctgtacgaaaggcgtttcttagccttaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="132506" stop="133777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132802" g_stop="133478" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E376066" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132802" e_stop="133478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTTAGAAATCTGTTTATGTATTTGACCAAATAAATACATACTATTCTTCTTTCAGTCTCAATTTATATGGTATATATGTCCGTTTGTTTCACGCAAGAATGTCACTTTAACTTTAAAATTCTCCTTTTTTAAGTGAGATGAATCAATGAGTACAAATGAAAATATGTGATCCATGATACAACAAACACTCAAATGTCTTAAATTTGAGGATGAGAATCAGATCGAATGTAGTTTCAAACGACAACATGAATTGTGTCAACTCTCTCTGATAAAGTAAATTTCAGTACGAAAGATGAATCGATGAAGGCTAAGGTATTTCATGATGCATTGATAGCAGCCTGGATTTGTTCCAAAGTTCTTCCTTTGGTTTCAGGTACTATTTTTATCACAAATAATATGGACAGTGCATTCACTGCAGCATACAGAACGAACGTACCTGAAAAACAGTTAAAATTAACTAATGTTAGTTGAAATATCTCATCTTTAGAAATGATATTTGTGATAATGATTGACGACTGTTTAGTTACCAAAAGAATTCCAGGTCATGAGGAAGTTGAAAGTGTAGGAGCACGCCCATGCTCCGAACCAATTCACTAGTGTTGCAAGGCTCCCAGCAGCACCTTTAATATTTATAGGATATATCTGTACGAAAGGCGTTTCTTAGCCTTAAAAA</genome_strand>
        <mrna_strand>TTTTTTTAGAAATCTGTTTATGTATTTGACCAAATAAATACATACTATTCTTCTTTCAGTCTCAATTTATATGGTATATATGTCCGTTTGTTTCACGCAAGAATGTCACTTTAACTTTAAAATTCTCCTTTTTTAAGTGAGATGAATCAATGAGTACAAATGAAAATATGTGATCCATGATACAACAAACACTCAAATGTCTTAAATTTGAGGATGAGAATCAGATCGAATGTAGTTTCAAACGACAACATGAATTGTGTCAACTCTCTCTGATAAAGTAAATTTCAGTACGAAAGATGAATCGATGAAGGCTAAGGTATTTCATGATGCATTGATAGCAGCCTGGATTTGTTCCAAAGTTCTTCCTTTGGTTTCAGGTACTATTTTTATCACAAATAATATGGACAGTGCATTCACTGCAGCATACAGAACGAACGTACCTGAAAAACAGTTAAAATTAACTAATGTTAGTTGAAATATCTCATCTTTAGAAATGATATTTGTGATAATGATTGACGACTGTTTAGTTACCAAAAGAATTCCAGGTCATGAGGAAGTTGAAAGTGTAGGAGCACGCCCATGCTCCGAACCAATTCACTAGTGTTGCAAGGCTCCCAGCAGCACCTTTAATATTTATAGGATATATCTGTACGAAAGGCGTTTCTTAGCCTTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324161" ref_strand="+" ref_description="SGN-E324161 [cTOC-4-G16]">
      <seq>tttttttacaaatctggttatgtatttgaccaaataaatacatactattcttctttcagtctcaatttatatggtatatatgtccgtttgtttcacgcaagaatgtcactttaactttaaaattctccttttttaagtgagatgaatcaatgagtacaaatgaaaatatgtgatccatgatacaacaaacactcaaatgtcttaaatttgaggatgagaatcagatcgaatgtagtttcaaacgacaacatgaattgtgtcaactctctctgataaagtaaatttcagtacgaaagatgaatcgatgaaggctaaggtatttcatgatgcattgatagcagcctggatttgttccaaagttcttcctttggtttcaggtactatttttatcacaaataatatggacagtgcattcactgcagcatacagaacgaacgtacctgaaaaacagttaaaattaactaatgttagttgaaatatctcatctttagaaatgatatttgtgataatgattgacgactgtttagttaccaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="132506" stop="133638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132802" g_stop="133338" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E324161" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132802" e_stop="133338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTTAGAAATCTGTTTATGTATTTGACCAAATAAATACATACTATTCTTCTTTCAGTCTCAATTTATATGGTATATATGTCCGTTTGTTTCACGCAAGAATGTCACTTTAACTTTAAAATTCTCCTTTTTTAAGTGAGATGAATCAATGAGTACAAATGAAAATATGTGATCCATGATACAACAAACACTCAAATGTCTTAAATTTGAGGATGAGAATCAGATCGAATGTAGTTTCAAACGACAACATGAATTGTGTCAACTCTCTCTGATAAAGTAAATTTCAGTACGAAAGATGAATCGATGAAGGCTAAGGTATTTCATGATGCATTGATAGCAGCCTGGATTTGTTCCAAAGTTCTTCCTTTGGTTTCAGGTACTATTTTTATCACAAATAATATGGACAGTGCATTCACTGCAGCATACAGAACGAACGTACCTGAAAAACAGTTAAAATTAACTAATGTTAGTTGAAATATCTCATCTTTAGAAATGATATTTGTGATAATGATTGACGACTGTTTAGTTACCAAAAG</genome_strand>
        <mrna_strand>TTTTTTTACAAATCTGGTTATGTATTTGACCAAATAAATACATACTATTCTTCTTTCAGTCTCAATTTATATGGTATATATGTCCGTTTGTTTCACGCAAGAATGTCACTTTAACTTTAAAATTCTCCTTTTTTAAGTGAGATGAATCAATGAGTACAAATGAAAATATGTGATCCATGATACAACAAACACTCAAATGTCTTAAATTTGAGGATGAGAATCAGATCGAATGTAGTTTCAAACGACAACATGAATTGTGTCAACTCTCTCTGATAAAGTAAATTTCAGTACGAAAGATGAATCGATGAAGGCTAAGGTATTTCATGATGCATTGATAGCAGCCTGGATTTGTTCCAAAGTTCTTCCTTTGGTTTCAGGTACTATTTTTATCACAAATAATATGGACAGTGCATTCACTGCAGCATACAGAACGAACGTACCTGAAAAACAGTTAAAATTAACTAATGTTAGTTGAAATATCTCATCTTTAGAAATGATATTTGTGATAATGATTGACGACTGTTTAGTTACCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371086" ref_strand="+" ref_description="SGN-E371086 [TUS-29-N11](-)">
      <seq>gcaattatacaggttcccatcaccgcgttgggtgcagccttaatcgacagaactggaagaaaacctcttttattggtttcaggaacaggacttgtcataggctgtatactaacaggaatctcattctatatgaagggacatgaaatggcaataaaggcagcaccgatacttgctgtaacaggcatactggtctatatcggttccttttcagtaggaatgggagcagttccgtgggttgtgatgtcagagatatatcctataaatattaaaggtgctgctgggagccttgcaacactagtgaattggttcggagcatgggcgtgctcctacactttcaacttcctcatgacctggaattcttttggtacgttcgttctgtatgctgcagtgaatgcactgtccatattatttgtgataaaaatagtacctgaaaccaaaggaagaactttggaacaaatccaggctgctatcaatgcatcatgaaataccttagccttcatcgattcatctttcgtactgaaatttactttatcagagagagttgacacaattcatgttgtcgtttgaaactacattcgatctgattctcatcctcaaatttaagacatttgagtgtttgttgtatcatggatcacatattttcatttgtactcattgattcatctcacttaaaaaaggagaattttaaagttaaagtgacaatcttgcgtgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="134321" stop="132588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134114" g_stop="134103" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134102" i_stop="134014" i_length="89">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134013" g_stop="133951" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="75" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133950" i_stop="133868" i_length="83">
            <donor d_prob="0.470" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133867" g_stop="133808" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="135" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133807" i_stop="133717" i_length="91">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133716" g_stop="133663" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="189" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="133662" i_stop="133578" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="133577" g_stop="133518" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="249" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="133517" i_stop="133448" i_length="70">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.394" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="133447" g_stop="133333" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="364" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="133332" i_stop="133242" i_length="91">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="133241" g_stop="132886" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="720" r_length="356" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E371086" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134114" e_stop="134103"/>
          <exon e_start="134013" e_stop="133951"/>
          <exon e_start="133867" e_stop="133808"/>
          <exon e_start="133716" e_stop="133663"/>
          <exon e_start="133577" e_stop="133518"/>
          <exon e_start="133447" e_stop="133333"/>
          <exon e_start="133241" e_stop="132886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTATACAGGTTTCTACTCTATGGATGTTAGATATCTCCCTCTTAAAGCTTGGTGTTATAACGGATAATTCACTTTTTTACTTTATTTTCTTCATCAGGTTCCCATCACCGCGTTGGGTGCAGCCTTAATCGACAGAACTGGAAGAAAACCTCTTTTATTGGTACATCTCGGAAAAGAAAACCATTTTCTTGAGGATATTACATGTTGCAGTCACAGAATATAATCATCGCGATATCCTTGCAGGTTTCAGGAACAGGACTTGTCATAGGCTGTATACTAACAGGAATCTCATTCTATATGAAGGTCAACATTATAACCAAAACTGCTTACTATTCTTATTATATATCTCAAGAACTCTTTGACGAAAAAAATTAAATTATTATTGGAGCTGCAGGGACATGAAATGGCAATAAAGGCAGCACCGATACTTGCTGTAACAGGCATACTGGTACCATCACTGTCCTTTCTAAAATTGTCCCCGACCCCAACGCTCCCTCATTTCAGTTTATGTAATACTTGTTCTCAAACGCCAGGTCTATATCGGTTCCTTTTCAGTAGGAATGGGAGCAGTTCCGTGGGTTGTGATGTCAGAGGTATGTTAATCTATACCATCCTGAATCCTCCAACTAACATTTTTAAGGCTAAGAAACGCCTTTCGTACAGATATATCCTATAAATATTAAAGGTGCTGCTGGGAGCCTTGCAACACTAGTGAATTGGTTCGGAGCATGGGCGTGCTCCTACACTTTCAACTTCCTCATGACCTGGAATTCTTTTGGTAACTAAACAGTCGTCAATCATTATCACAAATATCATTTCTAAAGATGAGATATTTCAACTAACATTAGTTAATTTTAACTGTTTTTCAGGTACGTTCGTTCTGTATGCTGCAGTGAATGCACTGTCCATATTATTTGTGATAAAAATAGTACCTGAAACCAAAGGAAGAACTTTGGAACAAATCCAGGCTGCTATCAATGCATCATGAAATACCTTAGCCTTCATCGATTCATCTTTCGTACTGAAATTTACTTTATCAGAGAGAGTTGACACAATTCATGTTGTCGTTTGAAACTACATTCGATCTGATTCTCATCCTCAAATTTAAGACATTTGAGTGTTTGTTGTATCATGGATCACATATTTTCATTTGTACTCATTGATTCATCTCACTTAAAAAAGGAGAATTTTAAAGTTAAAGTGACATTCTTGCGTGAAACAAACG</genome_strand>
        <mrna_strand>GCAATTATACAG.........................................................................................GTTCCCATCACCGCGTTGGGTGCAGCCTTAATCGACAGAACTGGAAGAAAACCTCTTTTATTG...................................................................................GTTTCAGGAACAGGACTTGTCATAGGCTGTATACTAACAGGAATCTCATTCTATATGAAG...........................................................................................GGACATGAAATGGCAATAAAGGCAGCACCGATACTTGCTGTAACAGGCATACTG.....................................................................................GTCTATATCGGTTCCTTTTCAGTAGGAATGGGAGCAGTTCCGTGGGTTGTGATGTCAGAG......................................................................ATATATCCTATAAATATTAAAGGTGCTGCTGGGAGCCTTGCAACACTAGTGAATTGGTTCGGAGCATGGGCGTGCTCCTACACTTTCAACTTCCTCATGACCTGGAATTCTTTTG...........................................................................................GTACGTTCGTTCTGTATGCTGCAGTGAATGCACTGTCCATATTATTTGTGATAAAAATAGTACCTGAAACCAAAGGAAGAACTTTGGAACAAATCCAGGCTGCTATCAATGCATCATGAAATACCTTAGCCTTCATCGATTCATCTTTCGTACTGAAATTTACTTTATCAGAGAGAGTTGACACAATTCATGTTGTCGTTTGAAACTACATTCGATCTGATTCTCATCCTCAAATTTAAGACATTTGAGTGTTTGTTGTATCATGGATCACATATTTTCATTTGTACTCATTGATTCATCTCACTTAAAAAAGGAGAATTTTAAAGTTAAAGTGACAATCTTGCGTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744734" ref_strand="+" ref_description="SGN-E744734 [GI|23504384]">
      <seq>aaggcctaagaagaaaaaaaattatgaaggaagatatagagcacagtgagaacagagtaaatgaagaaataacaactcctcttataattcaaacaaataaaagagtaaaagaagaaaatggatgttatgagaagaaacaagataggtgcatggtttaccttagcacattagtggctgttaggggttcatattcattgggatcttgtgctggatattcatcaccaacacaatccgccatcagagaggatcttaacttatctatagcacagatctcgctctttggttcaatatggacatttggtgcaatgattggagcaatcacaagtggtccaatcgctgattatattggtcgcaaaggggcaatgagaatgtcaagtggtttctgtgttgctggatggttagctattttcttcgctcagggagcacttgctctggacattggaagattggcaacaggatatggaatgggagttttctcttatgtggtgccggtatttatagctgaaattgcacctaaagatttacgaggagctttgacaaccataaaccagctgatgatatgttgtggagtctcagtttccttcattataggaactatgatgacatggaggacgttggcgttaacaggattaattccatgtgctattctgcttttcggtctatttatcattccagagtcacctaggtggttggcaaaaataggacatcaaaaggagtttgaacttgcactacgtaaacttcgaggcaaagatgctgatatatctgaggaggcagctgaaatcaaggattatatagaaacacttgaaaagcttccgaaagtgaacttgtttgatttgttccaaagaagatactcgagctcacttatagtgggagttggacttatggtgtttcaacagtttggtggaatcaatggaatctgtttctacaccggtagcatatttgagtcctcaggtttctcctctgatattggaactataatctatgcaattatacaggttcccatcaccgcgttgggtgcagccttaatcgacagaactggaagaaaacctcttttattggtttcaggaacaggacttgtcataggctgtatactaacaggaatctcattctatatgaagggacatgaaatggcaataaaggcagcaccgatacttgctgtaacaggcatactggtctatatcggttccttttcagtaggaatgggagcagttccgtgggttgtgatgtcagagatatatcctataaatattaaaggtgctgctgggagccttgcaacactagtgaattggttcggagcatgggcgtgctcctacactttcaacttcctcatgacctggaattcttttggtacgttcgttctgtatgctgcagtgaatgcactgtccatattatttgtgataaaaatagtacctgaaaccaaaggaagaactttggaacaaatccaggctgctatcaatgcatcatgaaataccttagccttcatcgattcatctttcgtactgaaatttactttatcagagagagttgacacaattcatgttgtcgtttgaaactacattcgatctgattctcatcctcaaatttaagacatttgagtgtttgttgtatcatggatcacatattttcatttgtactcattgattcatctcacttaaaaaaggagaattttaaagtttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="137121" stop="132611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136821" g_stop="136616" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136615" i_stop="136454" i_length="162">
            <donor d_prob="0.671" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136453" g_stop="136391" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="269" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136390" i_stop="135819" i_length="572">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135818" g_stop="135729" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="359" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135728" i_stop="135631" i_length="98">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135630" g_stop="135571" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="419" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135570" i_stop="135480" i_length="91">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135479" g_stop="135414" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="485" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135413" i_stop="135321" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135320" g_stop="135255" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="551" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="135254" i_stop="135024" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.800" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="135023" g_stop="134948" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="627" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="134947" i_stop="134858" i_length="90">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="134857" g_stop="134793" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="692" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="134792" i_stop="134706" i_length="87">
            <donor d_prob="0.575" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="134705" g_stop="134613" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="785" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="134612" i_stop="134531" i_length="82">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="134530" g_stop="134450" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="866" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="134449" i_stop="134360" i_length="90">
            <donor d_prob="0.648" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="134359" g_stop="134275" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="867" r_stop="951" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="134274" i_stop="134147" i_length="128">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="134146" g_stop="134103" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="952" r_stop="995" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="134102" i_stop="134014" i_length="89">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="134013" g_stop="133951" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="996" r_stop="1058" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="133950" i_stop="133868" i_length="83">
            <donor d_prob="0.470" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="133867" g_stop="133808" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1059" r_stop="1118" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="133807" i_stop="133717" i_length="91">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="133716" g_stop="133663" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1119" r_stop="1172" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="133662" i_stop="133578" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="133577" g_stop="133518" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1173" r_stop="1232" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="133517" i_stop="133448" i_length="70">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.394" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="133447" g_stop="133333" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1233" r_stop="1347" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="133332" i_stop="133242" i_length="91">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="133241" g_stop="132911" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1348" r_stop="1678" r_length="331" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1679" polyA_stop="1699"/>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E744734" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1678</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136821" e_stop="136616"/>
          <exon e_start="136453" e_stop="136391"/>
          <exon e_start="135818" e_stop="135729"/>
          <exon e_start="135630" e_stop="135571"/>
          <exon e_start="135479" e_stop="135414"/>
          <exon e_start="135320" e_stop="135255"/>
          <exon e_start="135023" e_stop="134948"/>
          <exon e_start="134857" e_stop="134793"/>
          <exon e_start="134705" e_stop="134613"/>
          <exon e_start="134530" e_stop="134450"/>
          <exon e_start="134359" e_stop="134275"/>
          <exon e_start="134146" e_stop="134103"/>
          <exon e_start="134013" e_stop="133951"/>
          <exon e_start="133867" e_stop="133808"/>
          <exon e_start="133716" e_stop="133663"/>
          <exon e_start="133577" e_stop="133518"/>
          <exon e_start="133447" e_stop="133333"/>
          <exon e_start="133241" e_stop="132911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAAAAGAAGAAAAAAAATTATGAAGGAAGATATAGAGCAAAGTGAGAACAGAGTAAATGAAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGTGTAAGTTCACTACTTCATCACACGGTTACTTAACTAATAGTTACGTTTTTTATGAGAGAATAACTGTTTTATTATTTGAGTGATCGTATGATAAATCAACTGTCTTATTTGATTGTTGTTAGTGTGTATAACTTAAATCCTTCATTTTCCCCCCCTTTTCAGGCTGGATATTCATCACCAACACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAGGTTAGATTCAGAGAAAAGATTTAGTTCGTTTTACTTTTCTTTTTAGTTCGTTTTTTTTTAAAAAATGTATATTTTCCTTTTTTGGCATTTTTTAATTTTAATTTTTTCATGTGTCATGTTTTGGTACATTTTGCATATATTTAGTTCAGGACCATAAAATTGAATTTTTTTTTTCTTAATCTTCGTGTCAAGTTATAACAATCCATAATAAGTGAGATTAGTAAATAAGGCAGGCAATATGCTATAATAGGGTAACTACAGATAGTGTAAGAATTCGTATAGTGTCAGTGTATATAAGTTAAATCCTTCATTCATTCACTTGGTTAGGTGAGTATTCTTGATTCGATTTACTAGAAAATGAACTACTTCTGCTGATCAAATGATAAATGAACTAGTATTAGAATGAAGTATTTGTACTGGTGTTAGAACACTAACATGATGTACTCAAGAATCTACATTGGTTGGAATTCTTCCGTTCTTAATGGAATATCGAATGTGCTGTTGTATTGGACTATACGTTGAATGTGCTTTTGTATTGTTGGCCTATACGTTGAATGTGTTTTGCAATACAGTTCTCGCTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGGGTAAGCAGAGGGAAAATTCTTACACCAGTATCATCCATGTTCACATATCGTCTTTATACAGCCCGATAATTATGTATGTATATGTAACACACAAACAGGCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTCGCTCAGGTTTATTACAAGCTTTCTTATCATATTCGCGACAGAGGAATTGCTTCTTAGGTCTTATGAACTGATATAATTATTTTTTGACTTCTTCAAGGGAGCACTTGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTGGTACGTTAATCGGTTGTTTTATTAATATATCCAACTATAGTTATGTGTTCAAACTTCTTGGTTCTGTCATTTACCTTGACAACAATGAATCAGGTGCCGGTATTTATAGCTGAAATTGCACCTAAAGATTTACGAGGAGCTTTGACAACCATAAACCAGGTAACTTGAACTTGCTATCTGTATTTTTTCTATTGTTTATCAAGCAGTCTATATCACCGTTTGTTTCACTGAGATAACTTGAAACAATGTGGTTACTTCAGTCTTCGATAAAATGAAGATAAGCTAAAGAGAAAGAAATATACTATACTTCTATAGGGTATGGAGTAGATATTGTTGTGGTTGCCTCTTGTTTATCATACTGTTGACTGTTTGTTGTATCTAAACTGACAGCTGATGATATGTTGTGGAGTCTCAGTTTCCTTCATTATAGGAACTATGATGACATGGAGGACGTTGGCGTTAACAGGTTTGTTTTAGCATCAAGTTGTATACAGAGAAATAACCACAATGAACAACGTATTCAATGATCGATAAGAGTTTGTTTTTCTTTTTCCAGGATTAATTCCATGTGCTATTCTGCTTTTCGGTCTATTTATCATTCCAGAGTCACCTAGGTGGTTGGTGAGTTAGAAAAACGAATGTTTAATAGTATTTATACGGTCAGTAAAATCAAGAAAATGACATTAATATTTCGATTATATGTAATAGGCAAAAATAGGACATCAAAAGGAGTTTGAACTTGCACTACGTAAACTTCGAGGCAAAGATGCTGATATATCTGAGGAGGCAGCTGAAATCAAGGTTCATTGTTTTCAAAAGCTCAAAGTTCAGTTTCTTTCAGTTTTCGGAGTTCATCTAAGACTTCCTGATCTGTCTGTGACAGGATTATATAGAAACACTTGAAAAGCTTCCGAAAGTGAACTTGTTTGATTTGTTCCAAAGAAGATACTCGAGCTCACTTATAGTAAAGTTCCTTTCCTATACATTGTTTTTTTTGATATTTTGGTAGCTGAAACAGTTGGTTAATTTTTACTTGTGATAAATCTATGGATAGGTGGGAGTTGGACTTATGGTGTTTCAACAGTTTGGTGGAATCAATGGAATCTGTTTCTACACCGGTAGCATATTTGAGTCCTCAGGTACGTACGTAGCATTCCCTCATTGTCAAATATCAGTTCACACTCGCGATAAGAAACACAGGACATTCAATATTATAATAGTGCTTAGAACTTGAAACCTCACTAACCATATTGTATTTCTTTTCCAGGTTTCCCCTCTGATATTGGAACTATAATCTATGCAATTATACAGGTTTCTACTCTATGGATGTTAGATATCTCCCTCTTAAAGCTTGGTGTTATAACGGATAATTCACTTTTTTACTTTATTTTCTTCATCAGGTTCCCATCACCGCGTTGGGTGCAGCCTTAATCGACAGAACTGGAAGAAAACCTCTTTTATTGGTACATCTCGGAAAAGAAAACCATTTTCTTGAGGATATTACATGTTGCAGTCACAGAATATAATCATCGCGATATCCTTGCAGGTTTCAGGAACAGGACTTGTCATAGGCTGTATACTAACAGGAATCTCATTCTATATGAAGGTCAACATTATAACCAAAACTGCTTACTATTCTTATTATATATCTCAAGAACTCTTTGACGAAAAAAATTAAATTATTATTGGAGCTGCAGGGACATGAAATGGCAATAAAGGCAGCACCGATACTTGCTGTAACAGGCATACTGGTACCATCACTGTCCTTTCTAAAATTGTCCCCGACCCCAACGCTCCCTCATTTCAGTTTATGTAATACTTGTTCTCAAACGCCAGGTCTATATCGGTTCCTTTTCAGTAGGAATGGGAGCAGTTCCGTGGGTTGTGATGTCAGAGGTATGTTAATCTATACCATCCTGAATCCTCCAACTAACATTTTTAAGGCTAAGAAACGCCTTTCGTACAGATATATCCTATAAATATTAAAGGTGCTGCTGGGAGCCTTGCAACACTAGTGAATTGGTTCGGAGCATGGGCGTGCTCCTACACTTTCAACTTCCTCATGACCTGGAATTCTTTTGGTAACTAAACAGTCGTCAATCATTATCACAAATATCATTTCTAAAGATGAGATATTTCAACTAACATTAGTTAATTTTAACTGTTTTTCAGGTACGTTCGTTCTGTATGCTGCAGTGAATGCACTGTCCATATTATTTGTGATAAAAATAGTACCTGAAACCAAAGGAAGAACTTTGGAACAAATCCAGGCTGCTATCAATGCATCATGAAATACCTTAGCCTTCATCGATTCATCTTTCGTACTGAAATTTACTTTATCAGAGAGAGTTGACACAATTCATGTTGTCGTTTGAAACTACATTCGATCTGATTCTCATCCTCAAATTTAAGACATTTGAGTGTTTGTTGTATCATGGATCACATATTTTCATTTGTACTCATTGATTCATCTCACTTAAAAAAGGAGAATTTTAAAGTTAAA</genome_strand>
        <mrna_strand>AAGGCCTAAGAAGAAAAAAAATTATGAAGGAAGATATAGAGCACAGTGAGAACAGAGTAAATGAAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTAGTGGCTGTTAGGGGTTCATATTCATTGGGATCTTGT..................................................................................................................................................................GCTGGATATTCATCACCAACACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGCTCTTTGGTTCAATATGGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGG..................................................................................................GCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTCGCTCAG...........................................................................................GGAGCACTTGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTG.............................................................................................GTGCCGGTATTTATAGCTGAAATTGCACCTAAAGATTTACGAGGAGCTTTGACAACCATAAACCAG.......................................................................................................................................................................................................................................CTGATGATATGTTGTGGAGTCTCAGTTTCCTTCATTATAGGAACTATGATGACATGGAGGACGTTGGCGTTAACAG..........................................................................................GATTAATTCCATGTGCTATTCTGCTTTTCGGTCTATTTATCATTCCAGAGTCACCTAGGTGGTTG.......................................................................................GCAAAAATAGGACATCAAAAGGAGTTTGAACTTGCACTACGTAAACTTCGAGGCAAAGATGCTGATATATCTGAGGAGGCAGCTGAAATCAAG..................................................................................GATTATATAGAAACACTTGAAAAGCTTCCGAAAGTGAACTTGTTTGATTTGTTCCAAAGAAGATACTCGAGCTCACTTATA..........................................................................................GTGGGAGTTGGACTTATGGTGTTTCAACAGTTTGGTGGAATCAATGGAATCTGTTTCTACACCGGTAGCATATTTGAGTCCTCAG................................................................................................................................GTTTCTCCTCTGATATTGGAACTATAATCTATGCAATTATACAG.........................................................................................GTTCCCATCACCGCGTTGGGTGCAGCCTTAATCGACAGAACTGGAAGAAAACCTCTTTTATTG...................................................................................GTTTCAGGAACAGGACTTGTCATAGGCTGTATACTAACAGGAATCTCATTCTATATGAAG...........................................................................................GGACATGAAATGGCAATAAAGGCAGCACCGATACTTGCTGTAACAGGCATACTG.....................................................................................GTCTATATCGGTTCCTTTTCAGTAGGAATGGGAGCAGTTCCGTGGGTTGTGATGTCAGAG......................................................................ATATATCCTATAAATATTAAAGGTGCTGCTGGGAGCCTTGCAACACTAGTGAATTGGTTCGGAGCATGGGCGTGCTCCTACACTTTCAACTTCCTCATGACCTGGAATTCTTTTG...........................................................................................GTACGTTCGTTCTGTATGCTGCAGTGAATGCACTGTCCATATTATTTGTGATAAAAATAGTACCTGAAACCAAAGGAAGAACTTTGGAACAAATCCAGGCTGCTATCAATGCATCATGAAATACCTTAGCCTTCATCGATTCATCTTTCGTACTGAAATTTACTTTATCAGAGAGAGTTGACACAATTCATGTTGTCGTTTGAAACTACATTCGATCTGATTCTCATCCTCAAATTTAAGACATTTGAGTGTTTGTTGTATCATGGATCACATATTTTCATTTGTACTCATTGATTCATCTCACTTAAAAAAGGAGAATTTTAAAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328882" ref_strand="+" ref_description="SGN-E328882 [cTOC-24-K10]">
      <seq>gtaaacttcgaggcaaagatgctgatatatctgaggaggcagctgaaatcaaggattatatagaaacacttgaaaagcttccgaaagtgaacttgtttgatttgttccaaagaagatactcgagctcacttatagtgggagttggacttatggtgtttcaacagtttggtggaatcaatggaatctgtttctacaccggtagcatatttgagtcctcaggtttcccctctgatattggaactataatctatgcaattatacaggttcccatcaccgcgttgggtgcagccttaatcgacagaactggaagaaaacctcttttattggtttcaggaacaggacttgtcataggctgtatactaacaggaatctcattctatatgaagggacatgaaatggcaataaaggcagcaccgatacttgctgtaacaggcatactggtctatatcggttccttttcagtaggaatgggagcagttccgtgggttgtgatgtcagagatatatcctataaatattaaaggtgctgctgggagccttgcaacactagtgaattggttcggagcatgggcgtgctcctacactttcaacttcctcatgacctggaattcttttggtacgttcgttctgtatgctgcagtgaatgcactgtccatattatttgtgataaaaatagtacctgaaacaaaggaagaactttggaacaaatccaggctgctatncatgcatcatgaaataccttagccttcatcgattcatctttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="134965" stop="132791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134665" g_stop="134613" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134612" i_stop="134531" i_length="82">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134530" g_stop="134450" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="134" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134449" i_stop="134360" i_length="90">
            <donor d_prob="0.648" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134359" g_stop="134275" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="219" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134274" i_stop="134147" i_length="128">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134146" g_stop="134103" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="263" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134102" i_stop="134014" i_length="89">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134013" g_stop="133951" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="326" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="133950" i_stop="133868" i_length="83">
            <donor d_prob="0.470" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="133867" g_stop="133808" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="386" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="133807" i_stop="133717" i_length="91">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="133716" g_stop="133663" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="440" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="133662" i_stop="133578" i_length="85">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="133577" g_stop="133518" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="500" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="133517" i_stop="133448" i_length="70">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.394" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="133447" g_stop="133333" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="615" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="133332" i_stop="133242" i_length="91">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="133241" g_stop="133091" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="765" r_length="150" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E328882" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134665" e_stop="134613"/>
          <exon e_start="134530" e_stop="134450"/>
          <exon e_start="134359" e_stop="134275"/>
          <exon e_start="134146" e_stop="134103"/>
          <exon e_start="134013" e_stop="133951"/>
          <exon e_start="133867" e_stop="133808"/>
          <exon e_start="133716" e_stop="133663"/>
          <exon e_start="133577" e_stop="133518"/>
          <exon e_start="133447" e_stop="133333"/>
          <exon e_start="133241" e_stop="133091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTCGAGGCAAAGATGCTGATATATCTGAGGAGGCAGCTGAAATCAAGGTTCATTGTTTTCAAAAGCTCAAAGTTCAGTTTCTTTCAGTTTTCGGAGTTCATCTAAGACTTCCTGATCTGTCTGTGACAGGATTATATAGAAACACTTGAAAAGCTTCCGAAAGTGAACTTGTTTGATTTGTTCCAAAGAAGATACTCGAGCTCACTTATAGTAAAGTTCCTTTCCTATACATTGTTTTTTTTGATATTTTGGTAGCTGAAACAGTTGGTTAATTTTTACTTGTGATAAATCTATGGATAGGTGGGAGTTGGACTTATGGTGTTTCAACAGTTTGGTGGAATCAATGGAATCTGTTTCTACACCGGTAGCATATTTGAGTCCTCAGGTACGTACGTAGCATTCCCTCATTGTCAAATATCAGTTCACACTCGCGATAAGAAACACAGGACATTCAATATTATAATAGTGCTTAGAACTTGAAACCTCACTAACCATATTGTATTTCTTTTCCAGGTTTCCCCTCTGATATTGGAACTATAATCTATGCAATTATACAGGTTTCTACTCTATGGATGTTAGATATCTCCCTCTTAAAGCTTGGTGTTATAACGGATAATTCACTTTTTTACTTTATTTTCTTCATCAGGTTCCCATCACCGCGTTGGGTGCAGCCTTAATCGACAGAACTGGAAGAAAACCTCTTTTATTGGTACATCTCGGAAAAGAAAACCATTTTCTTGAGGATATTACATGTTGCAGTCACAGAATATAATCATCGCGATATCCTTGCAGGTTTCAGGAACAGGACTTGTCATAGGCTGTATACTAACAGGAATCTCATTCTATATGAAGGTCAACATTATAACCAAAACTGCTTACTATTCTTATTATATATCTCAAGAACTCTTTGACGAAAAAAATTAAATTATTATTGGAGCTGCAGGGACATGAAATGGCAATAAAGGCAGCACCGATACTTGCTGTAACAGGCATACTGGTACCATCACTGTCCTTTCTAAAATTGTCCCCGACCCCAACGCTCCCTCATTTCAGTTTATGTAATACTTGTTCTCAAACGCCAGGTCTATATCGGTTCCTTTTCAGTAGGAATGGGAGCAGTTCCGTGGGTTGTGATGTCAGAGGTATGTTAATCTATACCATCCTGAATCCTCCAACTAACATTTTTAAGGCTAAGAAACGCCTTTCGTACAGATATATCCTATAAATATTAAAGGTGCTGCTGGGAGCCTTGCAACACTAGTGAATTGGTTCGGAGCATGGGCGTGCTCCTACACTTTCAACTTCCTCATGACCTGGAATTCTTTTGGTAACTAAACAGTCGTCAATCATTATCACAAATATCATTTCTAAAGATGAGATATTTCAACTAACATTAGTTAATTTTAACTGTTTTTCAGGTACGTTCGTTCTGTATGCTGCAGTGAATGCACTGTCCATATTATTTGTGATAAAAATAGTACCTGAAACCAAAGGAAGAACTTTGGAACAAATCCAGGCTGCTATCAATGCATCATGAAATACCTTAGCCTTCATCGATTCATCTTTCGT</genome_strand>
        <mrna_strand>GTAAACTTCGAGGCAAAGATGCTGATATATCTGAGGAGGCAGCTGAAATCAAG..................................................................................GATTATATAGAAACACTTGAAAAGCTTCCGAAAGTGAACTTGTTTGATTTGTTCCAAAGAAGATACTCGAGCTCACTTATA..........................................................................................GTGGGAGTTGGACTTATGGTGTTTCAACAGTTTGGTGGAATCAATGGAATCTGTTTCTACACCGGTAGCATATTTGAGTCCTCAG................................................................................................................................GTTTCCCCTCTGATATTGGAACTATAATCTATGCAATTATACAG.........................................................................................GTTCCCATCACCGCGTTGGGTGCAGCCTTAATCGACAGAACTGGAAGAAAACCTCTTTTATTG...................................................................................GTTTCAGGAACAGGACTTGTCATAGGCTGTATACTAACAGGAATCTCATTCTATATGAAG...........................................................................................GGACATGAAATGGCAATAAAGGCAGCACCGATACTTGCTGTAACAGGCATACTG.....................................................................................GTCTATATCGGTTCCTTTTCAGTAGGAATGGGAGCAGTTCCGTGGGTTGTGATGTCAGAG......................................................................ATATATCCTATAAATATTAAAGGTGCTGCTGGGAGCCTTGCAACACTAGTGAATTGGTTCGGAGCATGGGCGTGCTCCTACACTTTCAACTTCCTCATGACCTGGAATTCTTTTG...........................................................................................GTACGTTCGTTCTGTATGCTGCAGTGAATGCACTGTCCATATTATTTGTGATAAAAATAGTACCTGAAA-CAAAGGAAGAACTTTGGAACAAATCCAGGCTGCTATNCATGCATCATGAAATACCTTAGCCTTCATCGATTCATCTTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376065" ref_strand="+" ref_description="SGN-E376065 [TUS-40-K22](-)">
      <seq>cttaaaaatggttagttggaggattcaggatggtatagattaacatacctctgacatcacaacccacggaactgctcccattcctactgaaaaggaaccgatatagacctggcgtttgagaacaagtattacataaactgaaatgagggagcgttggggtcggggacaattttagaaaggacagtgatggtaccagtatgcctgttacagcaagtatcggtgctgcctttattgccatttcatgtccctgcagctccaataataatttaatttttttcgtcaaagagttcttgagatatataataagaatagtaagcagttttggttataatgttgaccttcatatagaatgagattcctgttagtatacagcctatgacaagtcctgttcctgaaacctgcaaggatatcgcgatgattatattctgtgactgcaacatgtaatatcctcaagaaaatggttttcttttccgagatgtaccaataaaagaggttttcttccagttctgtcgattaaggctgcacccaacgcggtgatgggaacctgatgaagaaaataaagtaaaaaagtgaattatccgttataacaccaagctttaagagggagatatctaacatccatagagtagaaacctgtataattgcatagattatagttccaatatcagaggggaaacctggaaaagaaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="+" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="133171" stop="134462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133471" g_stop="134162" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="+" ref_id="SGN-E376065" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133471" e_stop="134162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAAATG-TTAGTTGGAGGATTCAGGATGGTATAGATTAACATACCTCTGACATCACAACCCACGGAACTGCTCCCATTCCTACTGAAAAGGAACCGATATAGACCTGGCGTTTGAGAACAAGTATTACATAAACTGAAATGAGGGAGCGTTGGGGTCGGGGACAATTTTAGAAAGGACAGTGATGGTACCAGTATGCCTGTTACAGCAAGTATCGGTGCTGCCTTTATTGCCATTTCATGTCCCTGCAGCTCCAATAATAATTTAATTTTTTTCGTCAAAGAGTTCTTGAGATATATAATAAGAATAGTAAGCAGTTTTGGTTATAATGTTGACCTTCATATAGAATGAGATTCCTGTTAGTATACAGCCTATGACAAGTCCTGTTCCTGAAACCTGCAAGGATATCGCGATGATTATATTCTGTGACTGCAACATGTAATATCCTCAAGAAAATGGTTTTCTTTTCCGAGATGTACCAATAAAAGAGGTTTTCTTCCAGTTCTGTCGATTAAGGCTGCACCCAACGCGGTGATGGGAACCTGATGAAGAAAATAAAGTAAAAAAGTGAATTATCCGTTATAACACCAAGCTTTAAGAGGGAGATATCTAACATCCATAGAGTAGAAACCTGTATAATTGCATAGATTATAGTTCCAATATCAGAGGGGAAACCTGGAAAAGAAATACA</genome_strand>
        <mrna_strand>CTTAAAAATGGTTAGTTGGAGGATTCAGGATGGTATAGATTAACATACCTCTGACATCACAACCCACGGAACTGCTCCCATTCCTACTGAAAAGGAACCGATATAGACCTGGCGTTTGAGAACAAGTATTACATAAACTGAAATGAGGGAGCGTTGGGGTCGGGGACAATTTTAGAAAGGACAGTGATGGTACCAGTATGCCTGTTACAGCAAGTATCGGTGCTGCCTTTATTGCCATTTCATGTCCCTGCAGCTCCAATAATAATTTAATTTTTTTCGTCAAAGAGTTCTTGAGATATATAATAAGAATAGTAAGCAGTTTTGGTTATAATGTTGACCTTCATATAGAATGAGATTCCTGTTAGTATACAGCCTATGACAAGTCCTGTTCCTGAAACCTGCAAGGATATCGCGATGATTATATTCTGTGACTGCAACATGTAATATCCTCAAGAAAATGGTTTTCTTTTCCGAGATGTACCAATAAAAGAGGTTTTCTTCCAGTTCTGTCGATTAAGGCTGCACCCAACGCGGTGATGGGAACCTGATGAAGAAAATAAAGTAAAAAAGTGAATTATCCGTTATAACACCAAGCTTTAAGAGGGAGATATCTAACATCCATAGAGTAGAAACCTGTATAATTGCATAGATTATAGTTCCAATATCAGAGGGGAAACCTGGAAAAGAAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236110" ref_strand="+" ref_description="SGN-E236110 [cLED-16-M9]">
      <seq>cttttcggtctatttatcattccagagtcacctaggtggttggcaaaaataggacatcaaaaggagtttgaacttgcactacgtaaacttcgaggcaaagatgctgatatatctgaggaggcagctgaaatcaaggattatatagaaacacttgaaaagcttccgaaagtgaacttgtttgatttgttccaaagaagatactcgagctcacttatagtgggagttggacttatggtgtttcaacagtttggtggaatcaatggaatctgtttctacaccggtagcatatttgagtcctcaggtttcccctctgatattggaactataatctatgcaattatacaggttcccatcaccgcgttgggtgcagccttaatcgacagaactggaagaaaacctcttttattggtttcaggaacaggacttgtcataggctgtatactaacaggaatctcattctatatgaagggacatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="135134" stop="133507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134834" g_stop="134793" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134792" i_stop="134706" i_length="87">
            <donor d_prob="0.575" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134705" g_stop="134613" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="135" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134612" i_stop="134531" i_length="82">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134530" g_stop="134450" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="216" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134449" i_stop="134360" i_length="90">
            <donor d_prob="0.648" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134359" g_stop="134275" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="301" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134274" i_stop="134147" i_length="128">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134146" g_stop="134103" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="345" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="134102" i_stop="134014" i_length="89">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="134013" g_stop="133951" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="408" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="133950" i_stop="133868" i_length="83">
            <donor d_prob="0.470" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="133867" g_stop="133808" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="468" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="133807" i_stop="133717" i_length="91">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="133716" g_stop="133706" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="479" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E236110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134834" e_stop="134793"/>
          <exon e_start="134705" e_stop="134613"/>
          <exon e_start="134530" e_stop="134450"/>
          <exon e_start="134359" e_stop="134275"/>
          <exon e_start="134146" e_stop="134103"/>
          <exon e_start="134013" e_stop="133951"/>
          <exon e_start="133867" e_stop="133808"/>
          <exon e_start="133716" e_stop="133706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCGGTCTATTTATCATTCCAGAGTCACCTAGGTGGTTGGTGAGTTAGAAAAACGAATGTTTAATAGTATTTATACGGTCAGTAAAATCAAGAAAATGACATTAATATTTCGATTATATGTAATAGGCAAAAATAGGACATCAAAAGGAGTTTGAACTTGCACTACGTAAACTTCGAGGCAAAGATGCTGATATATCTGAGGAGGCAGCTGAAATCAAGGTTCATTGTTTTCAAAAGCTCAAAGTTCAGTTTCTTTCAGTTTTCGGAGTTCATCTAAGACTTCCTGATCTGTCTGTGACAGGATTATATAGAAACACTTGAAAAGCTTCCGAAAGTGAACTTGTTTGATTTGTTCCAAAGAAGATACTCGAGCTCACTTATAGTAAAGTTCCTTTCCTATACATTGTTTTTTTTGATATTTTGGTAGCTGAAACAGTTGGTTAATTTTTACTTGTGATAAATCTATGGATAGGTGGGAGTTGGACTTATGGTGTTTCAACAGTTTGGTGGAATCAATGGAATCTGTTTCTACACCGGTAGCATATTTGAGTCCTCAGGTACGTACGTAGCATTCCCTCATTGTCAAATATCAGTTCACACTCGCGATAAGAAACACAGGACATTCAATATTATAATAGTGCTTAGAACTTGAAACCTCACTAACCATATTGTATTTCTTTTCCAGGTTTCCCCTCTGATATTGGAACTATAATCTATGCAATTATACAGGTTTCTACTCTATGGATGTTAGATATCTCCCTCTTAAAGCTTGGTGTTATAACGGATAATTCACTTTTTTACTTTATTTTCTTCATCAGGTTCCCATCACCGCGTTGGGTGCAGCCTTAATCGACAGAACTGGAAGAAAACCTCTTTTATTGGTACATCTCGGAAAAGAAAACCATTTTCTTGAGGATATTACATGTTGCAGTCACAGAATATAATCATCGCGATATCCTTGCAGGTTTCAGGAACAGGACTTGTCATAGGCTGTATACTAACAGGAATCTCATTCTATATGAAGGTCAACATTATAACCAAAACTGCTTACTATTCTTATTATATATCTCAAGAACTCTTTGACGAAAAAAATTAAATTATTATTGGAGCTGCAGGGACATGAAAT</genome_strand>
        <mrna_strand>CTTTTCGGTCTATTTATCATTCCAGAGTCACCTAGGTGGTTG.......................................................................................GCAAAAATAGGACATCAAAAGGAGTTTGAACTTGCACTACGTAAACTTCGAGGCAAAGATGCTGATATATCTGAGGAGGCAGCTGAAATCAAG..................................................................................GATTATATAGAAACACTTGAAAAGCTTCCGAAAGTGAACTTGTTTGATTTGTTCCAAAGAAGATACTCGAGCTCACTTATA..........................................................................................GTGGGAGTTGGACTTATGGTGTTTCAACAGTTTGGTGGAATCAATGGAATCTGTTTCTACACCGGTAGCATATTTGAGTCCTCAG................................................................................................................................GTTTCCCCTCTGATATTGGAACTATAATCTATGCAATTATACAG.........................................................................................GTTCCCATCACCGCGTTGGGTGCAGCCTTAATCGACAGAACTGGAAGAAAACCTCTTTTATTG...................................................................................GTTTCAGGAACAGGACTTGTCATAGGCTGTATACTAACAGGAATCTCATTCTATATGAAG...........................................................................................GGACATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307941" ref_strand="+" ref_description="SGN-E307941 [cLEZ-7-H20]">
      <seq>tgaaattgcacctaaagatttacgaggagctttgacaaccataaaccagctgatgatatgttgtggaggctcagtttccttcattataggaactatgatgacatggaggacgttggcgttaacaggattaattccatgtgctattctgcttttcggtctatttatcattccagagtcacctaagtggttggcaaaaataggacatcaaaaggagtttgaacttgcactacgttaacttcgaggcaaagatgctgatatatctgaggaggcagctgaaatcaaggattatatataaacacttgtaaagcttccgaaagagaacttgattgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="135603" stop="134304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135303" g_stop="135255" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135254" i_stop="135024" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.800" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135023" g_stop="134948" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="125" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134947" i_stop="134858" i_length="90">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134857" g_stop="134793" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="190" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134792" i_stop="134706" i_length="87">
            <donor d_prob="0.575" d_score="0.98"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134705" g_stop="134613" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="283" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134612" i_stop="134531" i_length="82">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134530" g_stop="134481" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="333" r_length="50" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E307941" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135303" e_stop="135255"/>
          <exon e_start="135023" e_stop="134948"/>
          <exon e_start="134857" e_stop="134793"/>
          <exon e_start="134705" e_stop="134613"/>
          <exon e_start="134530" e_stop="134481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTGCACCTAAAGATTTACGAGGAGCTTTGACAACCATAAACCAGGTAACTTGAACTTGCTATCTGTATTTTTTCTATTGTTTATCAAGCAGTCTATATCACCGTTTGTTTCACTGAGATAACTTGAAACAATGTGGTTACTTCAGTCTTCGATAAAATGAAGATAAGCTAAAGAGAAAGAAATATACTATACTTCTATAGGGTATGGAGTAGATATTGTTGTGGTTGCCTCTTGTTTATCATACTGTTGACTGTTTGTTGTATCTAAACTGACAGCTGATGATATGTTGTGGAGTCTCAGTTTCCTTCATTATAGGAACTATGATGACATGGAGGACGTTGGCGTTAACAGGTTTGTTTTAGCATCAAGTTGTATACAGAGAAATAACCACAATGAACAACGTATTCAATGATCGATAAGAGTTTGTTTTTCTTTTTCCAGGATTAATTCCATGTGCTATTCTGCTTTTCGGTCTATTTATCATTCCAGAGTCACCTAGGTGGTTGGTGAGTTAGAAAAACGAATGTTTAATAGTATTTATACGGTCAGTAAAATCAAGAAAATGACATTAATATTTCGATTATATGTAATAGGCAAAAATAGGACATCAAAAGGAGTTTGAACTTGCACTACGTAAACTTCGAGGCAAAGATGCTGATATATCTGAGGAGGCAGCTGAAATCAAGGTTCATTGTTTTCAAAAGCTCAAAGTTCAGTTTCTTTCAGTTTTCGGAGTTCATCTAAGACTTCCTGATCTGTCTGTGACAGGATTATATAGAAACACTTGAAAAGCTTCCGAAAGTGAACTTGTTTGATTT</genome_strand>
        <mrna_strand>TGAAATTGCACCTAAAGATTTACGAGGAGCTTTGACAACCATAAACCAG.......................................................................................................................................................................................................................................CTGATGATATGTTGTGGAGGCTCAGTTTCCTTCATTATAGGAACTATGATGACATGGAGGACGTTGGCGTTAACAG..........................................................................................GATTAATTCCATGTGCTATTCTGCTTTTCGGTCTATTTATCATTCCAGAGTCACCTAAGTGGTTG.......................................................................................GCAAAAATAGGACATCAAAAGGAGTTTGAACTTGCACTACGTTAACTTCGAGGCAAAGATGCTGATATATCTGAGGAGGCAGCTGAAATCAAG..................................................................................GATTATATATAAACACTTGTAAAGCTTCCGAAAGAGAACTTGATTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281998" ref_strand="+" ref_description="SGN-E281998 [cLES-2-O24]">
      <seq>tgctctggacattggaagattggcaacaggatatggaatgggagttttctcttatgtggtgccggtatttatagctgaaattgcacctaaagatttacgaggagctttgacaaccataaaccagctgatgatatgttgtggagtctcagtttccttcattataggaactatgatgacatggaggacgttggcgttaacaggattaattccatgtgctattctgcttttcggtctatttatcattccagagtcacctaggtggttggcaaaaataggacatcaaaaggagtttgaacttgcactacgtaaacttcgaggcaaagatgctgatatatctgaggaggcagctgaaatcaaggattatatagaaacacttgaaaagcttccgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="135771" stop="134198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135471" g_stop="135414" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135413" i_stop="135321" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135320" g_stop="135255" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="124" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135254" i_stop="135024" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.800" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135023" g_stop="134948" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="200" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134947" i_stop="134858" i_length="90">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134857" g_stop="134793" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="265" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134792" i_stop="134706" i_length="87">
            <donor d_prob="0.575" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134705" g_stop="134613" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="358" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="134612" i_stop="134531" i_length="82">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="134530" g_stop="134498" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="391" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E281998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135471" e_stop="135414"/>
          <exon e_start="135320" e_stop="135255"/>
          <exon e_start="135023" e_stop="134948"/>
          <exon e_start="134857" e_stop="134793"/>
          <exon e_start="134705" e_stop="134613"/>
          <exon e_start="134530" e_stop="134498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTGGTACGTTAATCGGTTGTTTTATTAATATATCCAACTATAGTTATGTGTTCAAACTTCTTGGTTCTGTCATTTACCTTGACAACAATGAATCAGGTGCCGGTATTTATAGCTGAAATTGCACCTAAAGATTTACGAGGAGCTTTGACAACCATAAACCAGGTAACTTGAACTTGCTATCTGTATTTTTTCTATTGTTTATCAAGCAGTCTATATCACCGTTTGTTTCACTGAGATAACTTGAAACAATGTGGTTACTTCAGTCTTCGATAAAATGAAGATAAGCTAAAGAGAAAGAAATATACTATACTTCTATAGGGTATGGAGTAGATATTGTTGTGGTTGCCTCTTGTTTATCATACTGTTGACTGTTTGTTGTATCTAAACTGACAGCTGATGATATGTTGTGGAGTCTCAGTTTCCTTCATTATAGGAACTATGATGACATGGAGGACGTTGGCGTTAACAGGTTTGTTTTAGCATCAAGTTGTATACAGAGAAATAACCACAATGAACAACGTATTCAATGATCGATAAGAGTTTGTTTTTCTTTTTCCAGGATTAATTCCATGTGCTATTCTGCTTTTCGGTCTATTTATCATTCCAGAGTCACCTAGGTGGTTGGTGAGTTAGAAAAACGAATGTTTAATAGTATTTATACGGTCAGTAAAATCAAGAAAATGACATTAATATTTCGATTATATGTAATAGGCAAAAATAGGACATCAAAAGGAGTTTGAACTTGCACTACGTAAACTTCGAGGCAAAGATGCTGATATATCTGAGGAGGCAGCTGAAATCAAGGTTCATTGTTTTCAAAAGCTCAAAGTTCAGTTTCTTTCAGTTTTCGGAGTTCATCTAAGACTTCCTGATCTGTCTGTGACAGGATTATATAGAAACACTTGAAAAGCTTCCGAAA</genome_strand>
        <mrna_strand>TGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTG.............................................................................................GTGCCGGTATTTATAGCTGAAATTGCACCTAAAGATTTACGAGGAGCTTTGACAACCATAAACCAG.......................................................................................................................................................................................................................................CTGATGATATGTTGTGGAGTCTCAGTTTCCTTCATTATAGGAACTATGATGACATGGAGGACGTTGGCGTTAACAG..........................................................................................GATTAATTCCATGTGCTATTCTGCTTTTCGGTCTATTTATCATTCCAGAGTCACCTAGGTGGTTG.......................................................................................GCAAAAATAGGACATCAAAAGGAGTTTGAACTTGCACTACGTAAACTTCGAGGCAAAGATGCTGATATATCTGAGGAGGCAGCTGAAATCAAG..................................................................................GATTATATAGAAACACTTGAAAAGCTTCCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371087" ref_strand="+" ref_description="SGN-E371087 [TUS-29-N11]">
      <seq>aagaaataacaactcctcttataattcaaacaaataaaagagtaaaagaagaaaatggatgttatgagaagaaacaagataggtgcatggtttaccttagcacatttgtggctgtttgtggttcatattcatttggatcttgtgctggatattcatcaccaacacaatccgccatcagagaggatcttaacttatctatagcagagttctcgctctttggttcaatattgacatttggtgcaatgattggagcaatcacaagtggtccaatcgctgattatattggtcgcaaaggggcaatgagaatgtcaagtggtttctgtgttgctggatggttagctattttcttcgctcagggagcacttgctctggacattggaagattggcaacaggatatggaatgggagttttctcttatgtggtgccggtatttatagctgaaattgcacctaaagatttacgaggagctttgacaaccataaaccagctgatgatatgttgtggagtctcagtttccttcattataggaactatgatgacatggaggacgttggcgttaacaggattaattccatgtgctattctgcttttcggtctatttatcattccagagtcacctaggtggttggcaaaaataggacatcaaaaggagtatgaacttgcactacgtaaacttcgaggcaaagatgctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="137058" stop="134339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136758" g_stop="136616" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136615" i_stop="136454" i_length="162">
            <donor d_prob="0.671" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136453" g_stop="136391" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136390" i_stop="135819" i_length="572">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135818" g_stop="135729" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="296" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135728" i_stop="135631" i_length="98">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135630" g_stop="135571" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="356" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135570" i_stop="135480" i_length="91">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135479" g_stop="135414" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="422" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135413" i_stop="135321" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135320" g_stop="135255" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="488" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="135254" i_stop="135024" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.800" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="135023" g_stop="134948" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="564" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="134947" i_stop="134858" i_length="90">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="134857" g_stop="134793" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="629" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="134792" i_stop="134706" i_length="87">
            <donor d_prob="0.575" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="134705" g_stop="134639" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="696" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E371087" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136758" e_stop="136616"/>
          <exon e_start="136453" e_stop="136391"/>
          <exon e_start="135818" e_stop="135729"/>
          <exon e_start="135630" e_stop="135571"/>
          <exon e_start="135479" e_stop="135414"/>
          <exon e_start="135320" e_stop="135255"/>
          <exon e_start="135023" e_stop="134948"/>
          <exon e_start="134857" e_stop="134793"/>
          <exon e_start="134705" e_stop="134639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGTGTAAGTTCACTACTTCATCACACGGTTACTTAACTAATAGTTACGTTTTTTATGAGAGAATAACTGTTTTATTATTTGAGTGATCGTATGATAAATCAACTGTCTTATTTGATTGTTGTTAGTGTGTATAACTTAAATCCTTCATTTTCCCCCCCTTTTCAGGCTGGATATTCATCACCAACACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAGGTTAGATTCAGAGAAAAGATTTAGTTCGTTTTACTTTTCTTTTTAGTTCGTTTTTTTTTAAAAAATGTATATTTTCCTTTTTTGGCATTTTTTAATTTTAATTTTTTCATGTGTCATGTTTTGGTACATTTTGCATATATTTAGTTCAGGACCATAAAATTGAATTTTTTTTTTCTTAATCTTCGTGTCAAGTTATAACAATCCATAATAAGTGAGATTAGTAAATAAGGCAGGCAATATGCTATAATAGGGTAACTACAGATAGTGTAAGAATTCGTATAGTGTCAGTGTATATAAGTTAAATCCTTCATTCATTCACTTGGTTAGGTGAGTATTCTTGATTCGATTTACTAGAAAATGAACTACTTCTGCTGATCAAATGATAAATGAACTAGTATTAGAATGAAGTATTTGTACTGGTGTTAGAACACTAACATGATGTACTCAAGAATCTACATTGGTTGGAATTCTTCCGTTCTTAATGGAATATCGAATGTGCTGTTGTATTGGACTATACGTTGAATGTGCTTTTGTATTGTTGGCCTATACGTTGAATGTGTTTTGCAATACAGTTCTCGCTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGGGTAAGCAGAGGGAAAATTCTTACACCAGTATCATCCATGTTCACATATCGTCTTTATACAGCCCGATAATTATGTATGTATATGTAACACACAAACAGGCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTCGCTCAGGTTTATTACAAGCTTTCTTATCATATTCGCGACAGAGGAATTGCTTCTTAGGTCTTATGAACTGATATAATTATTTTTTGACTTCTTCAAGGGAGCACTTGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTGGTACGTTAATCGGTTGTTTTATTAATATATCCAACTATAGTTATGTGTTCAAACTTCTTGGTTCTGTCATTTACCTTGACAACAATGAATCAGGTGCCGGTATTTATAGCTGAAATTGCACCTAAAGATTTACGAGGAGCTTTGACAACCATAAACCAGGTAACTTGAACTTGCTATCTGTATTTTTTCTATTGTTTATCAAGCAGTCTATATCACCGTTTGTTTCACTGAGATAACTTGAAACAATGTGGTTACTTCAGTCTTCGATAAAATGAAGATAAGCTAAAGAGAAAGAAATATACTATACTTCTATAGGGTATGGAGTAGATATTGTTGTGGTTGCCTCTTGTTTATCATACTGTTGACTGTTTGTTGTATCTAAACTGACAGCTGATGATATGTTGTGGAGTCTCAGTTTCCTTCATTATAGGAACTATGATGACATGGAGGACGTTGGCGTTAACAGGTTTGTTTTAGCATCAAGTTGTATACAGAGAAATAACCACAATGAACAACGTATTCAATGATCGATAAGAGTTTGTTTTTCTTTTTCCAGGATTAATTCCATGTGCTATTCTGCTTTTCGGTCTATTTATCATTCCAGAGTCACCTAGGTGGTTGGTGAGTTAGAAAAACGAATGTTTAATAGTATTTATACGGTCAGTAAAATCAAGAAAATGACATTAATATTTCGATTATATGTAATAGGCAAAAATAGGACATCAAAAGGAGTTTGAACTTGCACTACGTAAACTTCGAGGCAAAGATGCTGATA</genome_strand>
        <mrna_strand>AAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGT..................................................................................................................................................................GCTGGATATTCATCACCAACACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGCTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGG..................................................................................................GCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTCGCTCAG...........................................................................................GGAGCACTTGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTG.............................................................................................GTGCCGGTATTTATAGCTGAAATTGCACCTAAAGATTTACGAGGAGCTTTGACAACCATAAACCAG.......................................................................................................................................................................................................................................CTGATGATATGTTGTGGAGTCTCAGTTTCCTTCATTATAGGAACTATGATGACATGGAGGACGTTGGCGTTAACAG..........................................................................................GATTAATTCCATGTGCTATTCTGCTTTTCGGTCTATTTATCATTCCAGAGTCACCTAGGTGGTTG.......................................................................................GCAAAAATAGGACATCAAAAGGAGTATGAACTTGCACTACGTAAACTTCGAGGCAAAGATGCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454118" ref_strand="+" ref_description="SGN-E454118 [cSTS-22-O3]">
      <seq>aaaaatatgaaagaagatatagagccaagtgagaatagagtaaatgaagaaataagaactcctcttataattcaaacaaataaaagtgaaaaggttgaaaatggatgttatgagaagaaacaagataggtgcatggtttaccttagcacatttgtggctgtttgtggttcatattcatttggatcttgtgctggatattcatcaccaatacaatccgccatcagagaggatcttaacttatctatagcagagttctcactctttggttcaatattgacatttggtgcaatgattggagcaatcacaagtggtccaatcgctgattatattggtcgtaaaggggcaatgagaatgtcaagtggtttctgtgttgctggatggttagccatttacttcgctcagggagcacttgctctggacattggaagattggcaacaggatatggaatgggagttttctcttatgtggtgccagtatttatagctgaaattgcacctaaagatttacggggagccttgacaaccataaaccagctgatgatatgttgtggagtctcagtttccttcattatangaactatgatgacatggagaatgttggcattaacaggattgattccatgtgctattctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="137105" stop="134536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136804" g_stop="136616" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136615" i_stop="136454" i_length="162">
            <donor d_prob="0.671" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136453" g_stop="136391" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="252" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136390" i_stop="135819" i_length="572">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135818" g_stop="135729" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="342" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135728" i_stop="135631" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.653" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135630" g_stop="135571" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="402" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135570" i_stop="135480" i_length="91">
            <donor d_prob="0.665" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135479" g_stop="135414" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="468" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135413" i_stop="135321" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135320" g_stop="135255" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="534" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="135254" i_stop="135024" i_length="231">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.800" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="135023" g_stop="134948" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="610" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="134947" i_stop="134858" i_length="90">
            <donor d_prob="0.786" d_score="0.92"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="134857" g_stop="134834" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="634" r_length="24" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E454118" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136804" e_stop="136616"/>
          <exon e_start="136453" e_stop="136391"/>
          <exon e_start="135818" e_stop="135729"/>
          <exon e_start="135630" e_stop="135571"/>
          <exon e_start="135479" e_stop="135414"/>
          <exon e_start="135320" e_stop="135255"/>
          <exon e_start="135023" e_stop="134948"/>
          <exon e_start="134857" e_stop="134834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTATGAAGGAAGATATAGAGCAAAGTGAGAACAGAGTAAATGAAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGTGTAAGTTCACTACTTCATCACACGGTTACTTAACTAATAGTTACGTTTTTTATGAGAGAATAACTGTTTTATTATTTGAGTGATCGTATGATAAATCAACTGTCTTATTTGATTGTTGTTAGTGTGTATAACTTAAATCCTTCATTTTCCCCCCCTTTTCAGGCTGGATATTCATCACCAACACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAGGTTAGATTCAGAGAAAAGATTTAGTTCGTTTTACTTTTCTTTTTAGTTCGTTTTTTTTTAAAAAATGTATATTTTCCTTTTTTGGCATTTTTTAATTTTAATTTTTTCATGTGTCATGTTTTGGTACATTTTGCATATATTTAGTTCAGGACCATAAAATTGAATTTTTTTTTTCTTAATCTTCGTGTCAAGTTATAACAATCCATAATAAGTGAGATTAGTAAATAAGGCAGGCAATATGCTATAATAGGGTAACTACAGATAGTGTAAGAATTCGTATAGTGTCAGTGTATATAAGTTAAATCCTTCATTCATTCACTTGGTTAGGTGAGTATTCTTGATTCGATTTACTAGAAAATGAACTACTTCTGCTGATCAAATGATAAATGAACTAGTATTAGAATGAAGTATTTGTACTGGTGTTAGAACACTAACATGATGTACTCAAGAATCTACATTGGTTGGAATTCTTCCGTTCTTAATGGAATATCGAATGTGCTGTTGTATTGGACTATACGTTGAATGTGCTTTTGTATTGTTGGCCTATACGTTGAATGTGTTTTGCAATACAGTTCTCGCTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGGGTAAGCAGAGGGAAAATTCTTACACCAGTATCATCCATGTTCACATATCGTCTTTATACAGCCCGATAATTATGTATGTATATGTAACACACAAACAGGCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTCGCTCAGGTTTATTACAAGCTTTCTTATCATATTCGCGACAGAGGAATTGCTTCTTAGGTCTTATGAACTGATATAATTATTTTTTGACTTCTTCAAGGGAGCACTTGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTGGTACGTTAATCGGTTGTTTTATTAATATATCCAACTATAGTTATGTGTTCAAACTTCTTGGTTCTGTCATTTACCTTGACAACAATGAATCAGGTGCCGGTATTTATAGCTGAAATTGCACCTAAAGATTTACGAGGAGCTTTGACAACCATAAACCAGGTAACTTGAACTTGCTATCTGTATTTTTTCTATTGTTTATCAAGCAGTCTATATCACCGTTTGTTTCACTGAGATAACTTGAAACAATGTGGTTACTTCAGTCTTCGATAAAATGAAGATAAGCTAAAGAGAAAGAAATATACTATACTTCTATAGGGTATGGAGTAGATATTGTTGTGGTTGCCTCTTGTTTATCATACTGTTGACTGTTTGTTGTATCTAAACTGACAGCTGATGATATGTTGTGGAGTCTCAGTTTCCTTCATTATAGGAACTATGATGACATGGAGGACGTTGGCGTTAACAGGTTTGTTTTAGCATCAAGTTGTATACAGAGAAATAACCACAATGAACAACGTATTCAATGATCGATAAGAGTTTGTTTTTCTTTTTCCAGGATTAATTCCATGTGCTATTCTGC</genome_strand>
        <mrna_strand>AAAAATATGAAAGAAGATATAGAGCCAAGTGAGAATAGAGTAAATGAAGAAATAAGAACTCCTCTTATAATTCAAACAAATAAAAGTGAAAAGGTTGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGT..................................................................................................................................................................GCTGGATATTCATCACCAATACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGTAAAGGG..................................................................................................GCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCCATTTACTTCGCTCAG...........................................................................................GGAGCACTTGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTG.............................................................................................GTGCCAGTATTTATAGCTGAAATTGCACCTAAAGATTTACGGGGAGCCTTGACAACCATAAACCAG.......................................................................................................................................................................................................................................CTGATGATATGTTGTGGAGTCTCAGTTTCCTTCATTATANGAACTATGATGACATGGAGAATGTTGGCATTAACAG..........................................................................................GATTGATTCCATGTGCTATTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334649" ref_strand="+" ref_description="SGN-E334649 [cTOD-23-D5]">
      <seq>ttatgaaggaagatatagagcaaagtgagaacagagtaaatgaagaaataacaactcctcttataattcaaacaaataaaagagtaaaagaagaaaatggatgttatgagaagaaacaagataggtgcatggtttaccttagcacatttgtggctgtttgtggttcatattcatttggatcttgtgctggatattcatcaccaacacaatccgccatcagagaggatcttaacttatctatagcagagttctcgctctttggttcaatattgacatttggtgcaatgattggagcaatcacaagtggtccaatcgctgattatattggtcgcaaaggggcaatgagaatgtcaagtggtttctgtgttgctggatggttagctattttcttcgctcagggagcacttgctctggacattggaagattggcaacaggatatggaatgggagttttctcttatgtggtgccggtatttatagctgaaattgcacctaaagatttacgaggagctttgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="137100" stop="134966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136800" g_stop="136616" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136615" i_stop="136454" i_length="162">
            <donor d_prob="0.671" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136453" g_stop="136391" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="248" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136390" i_stop="135819" i_length="572">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135818" g_stop="135729" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="338" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135728" i_stop="135631" i_length="98">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135630" g_stop="135571" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="398" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135570" i_stop="135480" i_length="91">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135479" g_stop="135414" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="464" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135413" i_stop="135321" i_length="93">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135320" g_stop="135266" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="519" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E334649" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136800" e_stop="136616"/>
          <exon e_start="136453" e_stop="136391"/>
          <exon e_start="135818" e_stop="135729"/>
          <exon e_start="135630" e_stop="135571"/>
          <exon e_start="135479" e_stop="135414"/>
          <exon e_start="135320" e_stop="135266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAGGAAGATATAGAGCAAAGTGAGAACAGAGTAAATGAAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGTGTAAGTTCACTACTTCATCACACGGTTACTTAACTAATAGTTACGTTTTTTATGAGAGAATAACTGTTTTATTATTTGAGTGATCGTATGATAAATCAACTGTCTTATTTGATTGTTGTTAGTGTGTATAACTTAAATCCTTCATTTTCCCCCCCTTTTCAGGCTGGATATTCATCACCAACACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAGGTTAGATTCAGAGAAAAGATTTAGTTCGTTTTACTTTTCTTTTTAGTTCGTTTTTTTTTAAAAAATGTATATTTTCCTTTTTTGGCATTTTTTAATTTTAATTTTTTCATGTGTCATGTTTTGGTACATTTTGCATATATTTAGTTCAGGACCATAAAATTGAATTTTTTTTTTCTTAATCTTCGTGTCAAGTTATAACAATCCATAATAAGTGAGATTAGTAAATAAGGCAGGCAATATGCTATAATAGGGTAACTACAGATAGTGTAAGAATTCGTATAGTGTCAGTGTATATAAGTTAAATCCTTCATTCATTCACTTGGTTAGGTGAGTATTCTTGATTCGATTTACTAGAAAATGAACTACTTCTGCTGATCAAATGATAAATGAACTAGTATTAGAATGAAGTATTTGTACTGGTGTTAGAACACTAACATGATGTACTCAAGAATCTACATTGGTTGGAATTCTTCCGTTCTTAATGGAATATCGAATGTGCTGTTGTATTGGACTATACGTTGAATGTGCTTTTGTATTGTTGGCCTATACGTTGAATGTGTTTTGCAATACAGTTCTCGCTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGGGTAAGCAGAGGGAAAATTCTTACACCAGTATCATCCATGTTCACATATCGTCTTTATACAGCCCGATAATTATGTATGTATATGTAACACACAAACAGGCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTCGCTCAGGTTTATTACAAGCTTTCTTATCATATTCGCGACAGAGGAATTGCTTCTTAGGTCTTATGAACTGATATAATTATTTTTTGACTTCTTCAAGGGAGCACTTGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTGGTACGTTAATCGGTTGTTTTATTAATATATCCAACTATAGTTATGTGTTCAAACTTCTTGGTTCTGTCATTTACCTTGACAACAATGAATCAGGTGCCGGTATTTATAGCTGAAATTGCACCTAAAGATTTACGAGGAGCTTTGACAA</genome_strand>
        <mrna_strand>TTATGAAGGAAGATATAGAGCAAAGTGAGAACAGAGTAAATGAAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGT..................................................................................................................................................................GCTGGATATTCATCACCAACACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGCTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGG..................................................................................................GCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTCGCTCAG...........................................................................................GGAGCACTTGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTG.............................................................................................GTGCCGGTATTTATAGCTGAAATTGCACCTAAAGATTTACGAGGAGCTTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425198" ref_strand="+" ref_description="SGN-E425198 [STM-44-B2]">
      <seq>aaaaatatgaaagaagatatagagccaagtgagaatagagtatatgaagaaataagaactcctcttataattcaaacaaataaaagtgaaaaggttgaaaatggatgttatgagaagaaacaagataggtgcatggtttaccttagcacatttgtggctgtttgtggttcatattcatttggatcttgtgctggatattcatcaccaatacaatccgccatcagagaggatcttaacttatctatagcagagttctcactctttggttcaatattgacatttggtgcaatgattggagcaatcacaagtggtccaatcgctgattatattggtcgtaaaggggcaatgagaatgtcaagaggtttctgtgttgctggatggctaaccatttacttctctcacggagcacttgctctggacattggaagaatggcaacaggatatggaatgggagttttctcttatgtggtgccagaatttatagctgaaattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="137105" stop="134994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136804" g_stop="136616" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136615" i_stop="136454" i_length="162">
            <donor d_prob="0.671" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136453" g_stop="136391" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="252" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136390" i_stop="135819" i_length="572">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135818" g_stop="135729" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="342" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135728" i_stop="135631" i_length="98">
            <donor d_prob="0.906" d_score="0.98"/>
            <acceptor a_prob="0.653" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135630" g_stop="135571" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="402" r_length="60" r_score="0.883"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135570" i_stop="135480" i_length="91">
            <donor d_prob="0.665" d_score="0.86"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135479" g_stop="135414" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="468" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135413" i_stop="135321" i_length="93">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135320" g_stop="135294" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="495" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E425198" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136804" e_stop="136616"/>
          <exon e_start="136453" e_stop="136391"/>
          <exon e_start="135818" e_stop="135729"/>
          <exon e_start="135630" e_stop="135571"/>
          <exon e_start="135479" e_stop="135414"/>
          <exon e_start="135320" e_stop="135294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTATGAAGGAAGATATAGAGCAAAGTGAGAACAGAGTAAATGAAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGTGTAAGTTCACTACTTCATCACACGGTTACTTAACTAATAGTTACGTTTTTTATGAGAGAATAACTGTTTTATTATTTGAGTGATCGTATGATAAATCAACTGTCTTATTTGATTGTTGTTAGTGTGTATAACTTAAATCCTTCATTTTCCCCCCCTTTTCAGGCTGGATATTCATCACCAACACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAGGTTAGATTCAGAGAAAAGATTTAGTTCGTTTTACTTTTCTTTTTAGTTCGTTTTTTTTTAAAAAATGTATATTTTCCTTTTTTGGCATTTTTTAATTTTAATTTTTTCATGTGTCATGTTTTGGTACATTTTGCATATATTTAGTTCAGGACCATAAAATTGAATTTTTTTTTTCTTAATCTTCGTGTCAAGTTATAACAATCCATAATAAGTGAGATTAGTAAATAAGGCAGGCAATATGCTATAATAGGGTAACTACAGATAGTGTAAGAATTCGTATAGTGTCAGTGTATATAAGTTAAATCCTTCATTCATTCACTTGGTTAGGTGAGTATTCTTGATTCGATTTACTAGAAAATGAACTACTTCTGCTGATCAAATGATAAATGAACTAGTATTAGAATGAAGTATTTGTACTGGTGTTAGAACACTAACATGATGTACTCAAGAATCTACATTGGTTGGAATTCTTCCGTTCTTAATGGAATATCGAATGTGCTGTTGTATTGGACTATACGTTGAATGTGCTTTTGTATTGTTGGCCTATACGTTGAATGTGTTTTGCAATACAGTTCTCGCTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGGGTAAGCAGAGGGAAAATTCTTACACCAGTATCATCCATGTTCACATATCGTCTTTATACAGCCCGATAATTATGTATGTATATGTAACACACAAACAGGCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTCGCTCAGGTTTATTACAAGCTTTCTTATCATATTCGCGACAGAGGAATTGCTTCTTAGGTCTTATGAACTGATATAATTATTTTTTGACTTCTTCAAGGGAGCACTTGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTGGTACGTTAATCGGTTGTTTTATTAATATATCCAACTATAGTTATGTGTTCAAACTTCTTGGTTCTGTCATTTACCTTGACAACAATGAATCAGGTGCCGGTATTTATAGCTGAAATTGCA</genome_strand>
        <mrna_strand>AAAAATATGAAAGAAGATATAGAGCCAAGTGAGAATAGAGTATATGAAGAAATAAGAACTCCTCTTATAATTCAAACAAATAAAAGTGAAAAGGTTGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGT..................................................................................................................................................................GCTGGATATTCATCACCAATACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGTAAAGGG..................................................................................................GCAATGAGAATGTCAAGAGGTTTCTGTGTTGCTGGATGGCTAACCATTTACTTCTCTCAC...........................................................................................GGAGCACTTGCTCTGGACATTGGAAGAATGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTG.............................................................................................GTGCCAGAATTTATAGCTGAAATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282759" ref_strand="+" ref_description="SGN-E282759 [cLER-15-A11]">
      <seq>aagaaataacaactcctcttataattcaaacaaataaaagagtaaaagaagaaaatggatgttatgagaagaaacaagataggtgcatggtttaccttagcacatttgtggctgtttgtggttcatattcatttggatcttgtgctggatattcatcaccaacacaatccgccatcagagaggatcttaacttatctatagcagagttctcgctctttggttcaatattgacatttggtgcaatgattggagcaatcacaagtggtccaatcgctgattatattggtcgcaaaggggcaatgagaatgtcaagtggtttctgtgttgctggatggttagctattttcttcgctcagggagcacttgctctggacattggaagattggcaacaggatatggaatgggagttttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="137058" stop="135121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136758" g_stop="136616" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136615" i_stop="136454" i_length="162">
            <donor d_prob="0.671" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136453" g_stop="136391" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136390" i_stop="135819" i_length="572">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135818" g_stop="135729" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="296" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135728" i_stop="135631" i_length="98">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135630" g_stop="135571" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="356" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135570" i_stop="135480" i_length="91">
            <donor d_prob="0.665" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135479" g_stop="135421" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="415" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E282759" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136758" e_stop="136616"/>
          <exon e_start="136453" e_stop="136391"/>
          <exon e_start="135818" e_stop="135729"/>
          <exon e_start="135630" e_stop="135571"/>
          <exon e_start="135479" e_stop="135421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGTGTAAGTTCACTACTTCATCACACGGTTACTTAACTAATAGTTACGTTTTTTATGAGAGAATAACTGTTTTATTATTTGAGTGATCGTATGATAAATCAACTGTCTTATTTGATTGTTGTTAGTGTGTATAACTTAAATCCTTCATTTTCCCCCCCTTTTCAGGCTGGATATTCATCACCAACACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAGGTTAGATTCAGAGAAAAGATTTAGTTCGTTTTACTTTTCTTTTTAGTTCGTTTTTTTTTAAAAAATGTATATTTTCCTTTTTTGGCATTTTTTAATTTTAATTTTTTCATGTGTCATGTTTTGGTACATTTTGCATATATTTAGTTCAGGACCATAAAATTGAATTTTTTTTTTCTTAATCTTCGTGTCAAGTTATAACAATCCATAATAAGTGAGATTAGTAAATAAGGCAGGCAATATGCTATAATAGGGTAACTACAGATAGTGTAAGAATTCGTATAGTGTCAGTGTATATAAGTTAAATCCTTCATTCATTCACTTGGTTAGGTGAGTATTCTTGATTCGATTTACTAGAAAATGAACTACTTCTGCTGATCAAATGATAAATGAACTAGTATTAGAATGAAGTATTTGTACTGGTGTTAGAACACTAACATGATGTACTCAAGAATCTACATTGGTTGGAATTCTTCCGTTCTTAATGGAATATCGAATGTGCTGTTGTATTGGACTATACGTTGAATGTGCTTTTGTATTGTTGGCCTATACGTTGAATGTGTTTTGCAATACAGTTCTCGCTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGGGTAAGCAGAGGGAAAATTCTTACACCAGTATCATCCATGTTCACATATCGTCTTTATACAGCCCGATAATTATGTATGTATATGTAACACACAAACAGGCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTCGCTCAGGTTTATTACAAGCTTTCTTATCATATTCGCGACAGAGGAATTGCTTCTTAGGTCTTATGAACTGATATAATTATTTTTTGACTTCTTCAAGGGAGCACTTGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTC</genome_strand>
        <mrna_strand>AAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGT..................................................................................................................................................................GCTGGATATTCATCACCAACACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGCTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGG..................................................................................................GCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTCGCTCAG...........................................................................................GGAGCACTTGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205392" ref_strand="+" ref_description="SGN-E205392 [cLEC-28-E7]">
      <seq>aaatatcttctttcttaattttctatatttttaaggcctaagaagaaaaaaaattatgaaggaagatatagagcacagtgagaacagagtaaatgaagaaataacaactcctcttataattcaaacaaataaaagagtaaaagaagaaaatggatgttatgagaagaaacaagataggtgcatggtttaccttagcacattagtggctgttaggggttcatattcattgggatcttgtgctggatattcatcaccaacacaattcgccatcagagaggatcttaacttatctatagcacagatctcgctctttggttcaatatggacatttggtgcaatgattggagcaatcacaagtggtccaatcgctgattatattggtcgcaaaggggcaatgagaatgtcaagtggtttctgtgttgctggatggttagctattttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="137153" stop="135277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136853" g_stop="136616" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136615" i_stop="136454" i_length="162">
            <donor d_prob="0.671" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136453" g_stop="136391" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="301" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136390" i_stop="135819" i_length="572">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135818" g_stop="135729" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="391" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135728" i_stop="135631" i_length="98">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135630" g_stop="135577" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="445" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E205392" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136853" e_stop="136616"/>
          <exon e_start="136453" e_stop="136391"/>
          <exon e_start="135818" e_stop="135729"/>
          <exon e_start="135630" e_stop="135577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCTTCTTTCTTAATTTTCTATATTTTTAAGGCAAAAGAAGAAAAAAAATTATGAAGGAAGATATAGAGCAAAGTGAGAACAGAGTAAATGAAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGTGTAAGTTCACTACTTCATCACACGGTTACTTAACTAATAGTTACGTTTTTTATGAGAGAATAACTGTTTTATTATTTGAGTGATCGTATGATAAATCAACTGTCTTATTTGATTGTTGTTAGTGTGTATAACTTAAATCCTTCATTTTCCCCCCCTTTTCAGGCTGGATATTCATCACCAACACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAGGTTAGATTCAGAGAAAAGATTTAGTTCGTTTTACTTTTCTTTTTAGTTCGTTTTTTTTTAAAAAATGTATATTTTCCTTTTTTGGCATTTTTTAATTTTAATTTTTTCATGTGTCATGTTTTGGTACATTTTGCATATATTTAGTTCAGGACCATAAAATTGAATTTTTTTTTTCTTAATCTTCGTGTCAAGTTATAACAATCCATAATAAGTGAGATTAGTAAATAAGGCAGGCAATATGCTATAATAGGGTAACTACAGATAGTGTAAGAATTCGTATAGTGTCAGTGTATATAAGTTAAATCCTTCATTCATTCACTTGGTTAGGTGAGTATTCTTGATTCGATTTACTAGAAAATGAACTACTTCTGCTGATCAAATGATAAATGAACTAGTATTAGAATGAAGTATTTGTACTGGTGTTAGAACACTAACATGATGTACTCAAGAATCTACATTGGTTGGAATTCTTCCGTTCTTAATGGAATATCGAATGTGCTGTTGTATTGGACTATACGTTGAATGTGCTTTTGTATTGTTGGCCTATACGTTGAATGTGTTTTGCAATACAGTTCTCGCTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGGGTAAGCAGAGGGAAAATTCTTACACCAGTATCATCCATGTTCACATATCGTCTTTATACAGCCCGATAATTATGTATGTATATGTAACACACAAACAGGCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTC</genome_strand>
        <mrna_strand>AAATATCTTCTTTCTTAATTTTCTATATTTTTAAGGCCTAAGAAGAAAAAAAATTATGAAGGAAGATATAGAGCACAGTGAGAACAGAGTAAATGAAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTAGTGGCTGTTAGGGGTTCATATTCATTGGGATCTTGT..................................................................................................................................................................GCTGGATATTCATCACCAACACAATTCGCCATCAGAGAGGATCTTAACTTATCTATAGCACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGCTCTTTGGTTCAATATGGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGG..................................................................................................GCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317397" ref_strand="+" ref_description="SGN-E317397 [cTOA-28-O2]">
      <seq>gaatttcactcatgaagtggaggttattgctagtgttaggcatgtgaatttggtggctttgagagggtactgcacagcgacaaccccttttgagggtcaccagaggatcattgtttgtgatttgatgaagaatgggagtcttcatgatcatttgtttggaacgagacatgaaaaattgagttggggtattaggcagaaggttgcaattggcactgctagaggattggcttacctgcattatggagcacaaccgggtattattcacagggatattaaggctagtaatatacttctagatgagagttttgaacctaaggtggcggattttggattggctaagttcactcctgaagggatgactcatttgagcactcgtgtagcaggaacgatggggtatgtagcacctgagtatgctttgtatggccaattgactgaaaggagcgatgtttatagctttggagttgtgcttcttgagcttttgagtggaaagaaagcaataatggagtttaaggatgggcagccgacgcttgtgactgattgggcctggtcattggttagggaaggcagagcattagatgttcttgaagacagcattccgcatttggggcctccagaagttatggagaagtatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="142700" stop="141467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142400" g_stop="141767" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E317397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142400" e_stop="141767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTCACTCATGAAGTGGAGGTTATTGCTAGTGTTAGGCATGTGAATTTGGTGGCTTTGAGAGGGTACTGCACAGCGACAACCCCTTTTGAGGGTCACCAGAGGATCATTGTTTGTGATTTGATGAAGAATGGGAGTCTTCATGATCATTTGTTTGGAACGAGACATGAAAAATTGAGTTGGGGTATTAGGCAGAAGGTTGCAATTGGCACTGCTAGAGGATTGGCTTACCTGCATTATGGAGCACAACCGGGTATTATTCACAGGGATATTAAGGCTAGTAATATACTTCTAGATGAGAGTTTTGAACCTAAGGTGGCGGATTTTGGATTGGCTAAGTTCACTCCTGAAGGGATGACTCATTTGAGCACTCGTGTAGCAGGAACGATGGGGTATGTAGCACCTGAGTATGCTTTGTATGGCCAATTGACTGAAAGGAGCGATGTTTATAGCTTTGGAGTTGTGCTTCTTGAGCTTTTGAGTGGAAAGAAAGCAATAATGGAGTTTAAGGATGGGCAGCCGACGCTTGTGACTGATTGGGCCTGGTCATTGGTTAGGGAAGGCAGAGCATTAGATGTTCTTGAAGACAGCATTCCGCATTTGGGGCCTCCAGAAGTTATGGAGAAGTATGTA</genome_strand>
        <mrna_strand>GAATTTCACTCATGAAGTGGAGGTTATTGCTAGTGTTAGGCATGTGAATTTGGTGGCTTTGAGAGGGTACTGCACAGCGACAACCCCTTTTGAGGGTCACCAGAGGATCATTGTTTGTGATTTGATGAAGAATGGGAGTCTTCATGATCATTTGTTTGGAACGAGACATGAAAAATTGAGTTGGGGTATTAGGCAGAAGGTTGCAATTGGCACTGCTAGAGGATTGGCTTACCTGCATTATGGAGCACAACCGGGTATTATTCACAGGGATATTAAGGCTAGTAATATACTTCTAGATGAGAGTTTTGAACCTAAGGTGGCGGATTTTGGATTGGCTAAGTTCACTCCTGAAGGGATGACTCATTTGAGCACTCGTGTAGCAGGAACGATGGGGTATGTAGCACCTGAGTATGCTTTGTATGGCCAATTGACTGAAAGGAGCGATGTTTATAGCTTTGGAGTTGTGCTTCTTGAGCTTTTGAGTGGAAAGAAAGCAATAATGGAGTTTAAGGATGGGCAGCCGACGCTTGTGACTGATTGGGCCTGGTCATTGGTTAGGGAAGGCAGAGCATTAGATGTTCTTGAAGACAGCATTCCGCATTTGGGGCCTCCAGAAGTTATGGAGAAGTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551121" ref_strand="+" ref_description="SGN-E551121 [TUS-55-F2]">
      <seq>ggaggaagaggaaaattgggttggcaaaaaagtggaatactaagagattggagagtaacttgagttctcgtttggattcgattagtggaagtactactttgattaggtatagttttgatgagattaaggcggctacaaagaatttctctaggttgaatatagttgggacaggagggtatgggaatgtgtataagggtgtgttgccgggtgggattgaagtagcattgaagaggttcaagaattgttcggttgctggtgatgcgaatttcactcatgaagtggaggttattgctagtgttaggcatgtgaatttggtggctttgagagggtactgcacagcgacaaccccttttgagggtcaccagaggatcattgtttgtgatttgatgaagaatgggagtcttcatgatcatttgtttggaacgagacatgaaaaattgagttggggtattaggcagaaggttgcaattggcactgctagaggattggcttacctgcattatggagcacaaccgggtattattcacagggatattaaggctagtaatatacttctagatgagagttttgaacctaaggtggcggattttggattggctaagttcactccctgaaggatgactcatttgagcactcgtgtagcangaacgatggggtatgtagcacctgagtatgctttgtatggccattgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="142962" stop="141667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142662" g_stop="141967" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E551121" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142662" e_stop="141967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAGAGGAAAATTGGGTTGGCAAAAAAGTGGAATACTAAGAGATTGGAGAGTAACTTGAGTTCTCGTTTGGATTCGATTAGTGGAAGTACTACTTTGATTAGGTATAGTTTTGATGAGATTAAGGCGGCTACAAAGAATTTCTCTAGGTTGAATATAGTTGGGACAGGAGGGTATGGGAATGTGTATAAGGGTGTGTTGCCGGGTGGGATTGAAGTAGCATTGAAGAGGTTCAAGAATTGTTCGGTTGCTGGTGATGCGAATTTCACTCATGAAGTGGAGGTTATTGCTAGTGTTAGGCATGTGAATTTGGTGGCTTTGAGAGGGTACTGCACAGCGACAACCCCTTTTGAGGGTCACCAGAGGATCATTGTTTGTGATTTGATGAAGAATGGGAGTCTTCATGATCATTTGTTTGGAACGAGACATGAAAAATTGAGTTGGGGTATTAGGCAGAAGGTTGCAATTGGCACTGCTAGAGGATTGGCTTACCTGCATTATGGAGCACAACCGGGTATTATTCACAGGGATATTAAGGCTAGTAATATACTTCTAGATGAGAGTTTTGAACCTAAGGTGGCGGATTTTGGATTGGCTAAGTTCACT-CCTGAAGGGATGACTCATTTGAGCACTCGTGTAGCAGGAACGATGGGGTATGTAGCACCTGAGTATGCTTTGTATGGCCAATTGACTG</genome_strand>
        <mrna_strand>GGAGGAAGAGGAAAATTGGGTTGGCAAAAAAGTGGAATACTAAGAGATTGGAGAGTAACTTGAGTTCTCGTTTGGATTCGATTAGTGGAAGTACTACTTTGATTAGGTATAGTTTTGATGAGATTAAGGCGGCTACAAAGAATTTCTCTAGGTTGAATATAGTTGGGACAGGAGGGTATGGGAATGTGTATAAGGGTGTGTTGCCGGGTGGGATTGAAGTAGCATTGAAGAGGTTCAAGAATTGTTCGGTTGCTGGTGATGCGAATTTCACTCATGAAGTGGAGGTTATTGCTAGTGTTAGGCATGTGAATTTGGTGGCTTTGAGAGGGTACTGCACAGCGACAACCCCTTTTGAGGGTCACCAGAGGATCATTGTTTGTGATTTGATGAAGAATGGGAGTCTTCATGATCATTTGTTTGGAACGAGACATGAAAAATTGAGTTGGGGTATTAGGCAGAAGGTTGCAATTGGCACTGCTAGAGGATTGGCTTACCTGCATTATGGAGCACAACCGGGTATTATTCACAGGGATATTAAGGCTAGTAATATACTTCTAGATGAGAGTTTTGAACCTAAGGTGGCGGATTTTGGATTGGCTAAGTTCACTCCCTGAA-GGATGACTCATTTGAGCACTCGTGTAGCANGAACGATGGGGTATGTAGCACCTGAGTATGCTTTGTATGGCC-ATTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688909" ref_strand="+" ref_description="SGN-E688909 [t3_tus_55_F02]">
      <seq>ggaggaagaggaaaattgggttggcaaaaaagtggaatactaagagattggagagtaacttgagttctcgtttggattcgattagtggaagtactactttgattaggtatagttttgatgagattaaggcggctacaaagaatttctctaggttgaatatagttgggacaggagggtatgggaatgtgtataagggtgtgttgccgggtgggattgaagtagcattgaagaggttcaagaattgttcggttgctggtgatgcgaatttcactcatgaagtggaggttattgctagtgttaggcatgtgaatttggtggctttgagagggtactgcacagcgacaaccccttttgagggtcaccagaggatcattgtttgtgatttgatgaagaatgggagtcttcatgatcatttgtttggaacgagacatgaaaaattgagttggggtattaggcagaaggttgcaattggcactgctagaggattggcttacctgcattatggagcacaaccgggtattattcacagggatattaaggctagtaatatacttctagatgagagttttgaacctaaggtggcggattttggattggctaagttcactccctgaaggatgactcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="142962" stop="141734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142662" g_stop="142034" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E688909" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142662" e_stop="142034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAGAGGAAAATTGGGTTGGCAAAAAAGTGGAATACTAAGAGATTGGAGAGTAACTTGAGTTCTCGTTTGGATTCGATTAGTGGAAGTACTACTTTGATTAGGTATAGTTTTGATGAGATTAAGGCGGCTACAAAGAATTTCTCTAGGTTGAATATAGTTGGGACAGGAGGGTATGGGAATGTGTATAAGGGTGTGTTGCCGGGTGGGATTGAAGTAGCATTGAAGAGGTTCAAGAATTGTTCGGTTGCTGGTGATGCGAATTTCACTCATGAAGTGGAGGTTATTGCTAGTGTTAGGCATGTGAATTTGGTGGCTTTGAGAGGGTACTGCACAGCGACAACCCCTTTTGAGGGTCACCAGAGGATCATTGTTTGTGATTTGATGAAGAATGGGAGTCTTCATGATCATTTGTTTGGAACGAGACATGAAAAATTGAGTTGGGGTATTAGGCAGAAGGTTGCAATTGGCACTGCTAGAGGATTGGCTTACCTGCATTATGGAGCACAACCGGGTATTATTCACAGGGATATTAAGGCTAGTAATATACTTCTAGATGAGAGTTTTGAACCTAAGGTGGCGGATTTTGGATTGGCTAAGTTCACTCCTGAAGGGATGACTCATTTG</genome_strand>
        <mrna_strand>GGAGGAAGAGGAAAATTGGGTTGGCAAAAAAGTGGAATACTAAGAGATTGGAGAGTAACTTGAGTTCTCGTTTGGATTCGATTAGTGGAAGTACTACTTTGATTAGGTATAGTTTTGATGAGATTAAGGCGGCTACAAAGAATTTCTCTAGGTTGAATATAGTTGGGACAGGAGGGTATGGGAATGTGTATAAGGGTGTGTTGCCGGGTGGGATTGAAGTAGCATTGAAGAGGTTCAAGAATTGTTCGGTTGCTGGTGATGCGAATTTCACTCATGAAGTGGAGGTTATTGCTAGTGTTAGGCATGTGAATTTGGTGGCTTTGAGAGGGTACTGCACAGCGACAACCCCTTTTGAGGGTCACCAGAGGATCATTGTTTGTGATTTGATGAAGAATGGGAGTCTTCATGATCATTTGTTTGGAACGAGACATGAAAAATTGAGTTGGGGTATTAGGCAGAAGGTTGCAATTGGCACTGCTAGAGGATTGGCTTACCTGCATTATGGAGCACAACCGGGTATTATTCACAGGGATATTAAGGCTAGTAATATACTTCTAGATGAGAGTTTTGAACCTAAGGTGGCGGATTTTGGATTGGCTAAGTTCACTCCCTGAAGGATGACTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262328" ref_strand="+" ref_description="SGN-E262328 [cLEG-56-D10]">
      <seq>gaggaagaggaaaattgggttggcaaaaaagtggaatactaagagattggagagtaacttgagttctcgtttggattcgattagtggaagtactactttgattaggtatagttttgatgagattaaggcggctacaaagaatttctctaggttgaatatagttgggacaggagggtatgggaatgtgtataagggtgtgttgccgggtgggattgaagtagcattgaagaggttcaagaattgttcggttgctggtgatgcgaatttcactcatgaagtggaggttattgctagtgttaggcatgtgaatttggtggctttgagagggtactgcacagcgacaaccccttttgagggtcaccagaggatcattgtttgtgatttgatgaagaatgggagtcttcatgatcatttgtttggaacgagacatgaaaaattgagttggggtattaggcagaaggttgcaattggcactgctagaggattggcttacctgcattatggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0226J12-7nQIn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0226J12.1" temp_strand="-" temp_description="C09HBa0226J12.1  AC234415.1 htgs_phase:3 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0226J12 upload_account_name:spain (1 - 156562)">
        <position start="142961" stop="141854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142661" g_stop="142154" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0226J12.1" gen_strand="-" ref_id="SGN-E262328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0226J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142661" e_stop="142154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGAGGAAAATTGGGTTGGCAAAAAAGTGGAATACTAAGAGATTGGAGAGTAACTTGAGTTCTCGTTTGGATTCGATTAGTGGAAGTACTACTTTGATTAGGTATAGTTTTGATGAGATTAAGGCGGCTACAAAGAATTTCTCTAGGTTGAATATAGTTGGGACAGGAGGGTATGGGAATGTGTATAAGGGTGTGTTGCCGGGTGGGATTGAAGTAGCATTGAAGAGGTTCAAGAATTGTTCGGTTGCTGGTGATGCGAATTTCACTCATGAAGTGGAGGTTATTGCTAGTGTTAGGCATGTGAATTTGGTGGCTTTGAGAGGGTACTGCACAGCGACAACCCCTTTTGAGGGTCACCAGAGGATCATTGTTTGTGATTTGATGAAGAATGGGAGTCTTCATGATCATTTGTTTGGAACGAGACATGAAAAATTGAGTTGGGGTATTAGGCAGAAGGTTGCAATTGGCACTGCTAGAGGATTGGCTTACCTGCATTATGGAGCA</genome_strand>
        <mrna_strand>GAGGAAGAGGAAAATTGGGTTGGCAAAAAAGTGGAATACTAAGAGATTGGAGAGTAACTTGAGTTCTCGTTTGGATTCGATTAGTGGAAGTACTACTTTGATTAGGTATAGTTTTGATGAGATTAAGGCGGCTACAAAGAATTTCTCTAGGTTGAATATAGTTGGGACAGGAGGGTATGGGAATGTGTATAAGGGTGTGTTGCCGGGTGGGATTGAAGTAGCATTGAAGAGGTTCAAGAATTGTTCGGTTGCTGGTGATGCGAATTTCACTCATGAAGTGGAGGTTATTGCTAGTGTTAGGCATGTGAATTTGGTGGCTTTGAGAGGGTACTGCACAGCGACAACCCCTTTTGAGGGTCACCAGAGGATCATTGTTTGTGATTTGATGAAGAATGGGAGTCTTCATGATCATTTGTTTGGAACGAGACATGAAAAATTGAGTTGGGGTATTAGGCAGAAGGTTGCAATTGGCACTGCTAGAGGATTGGCTTACCTGCATTATGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>39</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="57571" PGL_stop="58226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57571" e_stop="58226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="57571" e_stop="58226" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57571" stop="58226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGATTAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAGCGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGCTGTGGCTCCCCACATGGATGCCTCATTGGAAATAGGCATGTTTCCTCGATTGACTACAGGGCCTATAATGACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATTTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTACTACACAAGATGGGCATAGTAGAACAATTTGGCGTCGAGTTTGTGACATATCAATTTCAGGGGAACGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACAAGCAGCACCTATGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATACCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTAAGCCTAGAGCAAGGCAGGATGTCGGTTACTGCTTATGAGGCTAAGTTTCATGCATTATCTAGGTATGCCACCCAGCTTTACTTCAGTCCACAAGAGCGGATTCGCCATTTCGTGAAAGGGTTGAGGTCAGATTTACGGATTTCAGCCTTACAGGTAGCT</gDNA_template>
            <first_frame> R  *  L  I  R  F  L  L  I  L  A  G  Y  L  I  S  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  T  W  M  P  H  W  K  *  A  C  F  L  D  *  L  Q  G  L  *  *  Q  V  I  S  T  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  Y  Y  T  R  W  A  *  *  N  N  L  A  S  S  L  *  H  I  N  F  R  G  T  P  K  C  G  G  D  R  M  L  S  V  N  Q  H  K  Q  H  L  *  L  G  H  H  S  L  A  C  L  W  R  S  I  Y  P  G  L  *  G  I  G  G  E  M  S  S  *  A  *  S  K  A  G  C  R  L  L  L  M  R  L  S  F  M  H  Y  L  G  M  P  P  S  F  T  S  V  H  K  S  G  F  A  I  S  *  K  G  *  G  Q  I  Y  G  F  Q  P  Y  R  *   </first_frame>
            <second_frame>  D  D  *  S  G  S  C  L  S  *  R  V  I  *  S  A  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  I  D  Y  R  A  Y  N  D  K  *  S  A  R  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  H  S  R  T  I  W  R  R  V  C  D  I  S  I  S  G  E  R  Q  N  V  V  A  I  V  C  *  V  S  T  S  T  S  S  T  Y  D  L  G  I  I  L  *  L  V  Y  G  E  V  Y  T  P  D  F  E  G  *  E  E  R  *  V  P  K  P  R  A  R  Q  D  V  G  Y  C  L  *  G  *  V  S  C  I  I  *  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  R  E  R  V  E  V  R  F  T  D  F  S  L  T  G  S  </second_frame>
            <third_frame>   M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  R  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  G  V  Q  H  A  A  A  V  A  P  H  M  D  A  S  L  E  I  G  M  F  P  R  L  T  T  G  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  F  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  Q  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  A  P  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  H  A  L  S  R  Y  A  T  Q  L  Y  F  S  P  Q  E  R  I  R  H  F  V  K  G  L  R  S  D  L  R  I  S  A  L  Q  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0226J12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57573" stop="58226"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLAYLSGLSDQRQTPPVFSAPAPQVPGVQHAAAVAPHMDASLEIGMFPRLTTGPIMTSDQHELFSKFLKLKPPVFKGAEFEDAYDFLVDCHELLHKMGIVEQFGVEFVTYQFQGNAKMWWRSYVECQPAQAAPMTWASFSSLFMEKYIPRTLRDRRRDEFLSLEQGRMSVTAYEAKFHALSRYATQLYFSPQERIRHFVKGLRSDLRISALQVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="59097" PGL_stop="58767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59097" e_stop="58767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="59097" e_stop="58767" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59097" stop="58767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCCAACATTACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTTCTCTCCATAAAAGTCACAGGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAACAATACAGAACCCATGTAATCACAAATCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  T  L  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  F  S  P  *  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  R  K  I  H  M  K  M  W  I  Q  D  Q  T  I  Q  N  P  C  N  H  K  S  </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  H  Y  S  F  S  I  T  I  *  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  S  L  H  K  S  H  R  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  Q  Y  R  T  H  V  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  I  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  F  L  S  I  K  V  T  G  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  P  M  *  S  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0226J12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="58797" PGL_stop="59456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58797" e_stop="59456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="58797" e_stop="59456" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58797" stop="59456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCCTGTGACTTTTATGGAGAGAAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAATGTTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCACTTCAGTTCGTATCATCTCCTTCCTTCATGCTAAGAGAATGGTTATAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCAATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACATTCCTGGTATGCCACCGGATATGGATATTGACTTTTGTATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTAAGTTAAGAGAGTTAAAGGCCCAACTTACAGAGTTGTTAAGCAAAGGCCTAATAGACCAAGTGCATCTCCTTGGA</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  P  V  T  F  M  E  R  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  M  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  S  V  R  I  I  S  F  L  H  A  K  R  M  V  I  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  I  P  G  M  P  P  D  M  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  K  L  R  E  L  K  A  Q  L  T  E  L  L  S  K  G  L  I  D  Q  V  H  L  L  G </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  R  E  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  Q  S  *  I  V  M  L  K  L  *  C  W  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  S  F  M  L  R  E  W  L  *  R  V  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  Q  *  S  V  S  F  W  M  C  F  L  Q  T  F  L  V  C  H  R  I  W  I  L  T  F  V  L  I  W  S  R  V  L  A  P  F  P  Y  P  L  I  G  W  L  P  L  S  *  E  S  *  R  P  N  L  Q  S  C  *  A  K  A  *  *  T  K  C  I  S  L   </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  L  I  C  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  D  F  Y  G  E  K  Y  S  C  R  L  G  Y  L  R  N  G  *  L  R  C  N  S  G  Y  D  L  A  F  S  K  F  C  N  L  R  L  *  C  *  N  C  N  V  G  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  F  S  S  Y  H  L  L  P  S  C  *  E  N  G  Y  K  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  N  S  P  *  V  S  G  C  V  S  C  R  H  S  W  Y  A  T  G  Y  G  Y  *  L  L  Y  *  S  G  A  G  Y  S  P  H  F  H  T  P  L  *  D  G  S  R  *  V  K  R  V  K  G  P  T  Y  R  V  V  K  Q  R  P  N  R  P  S  A  S  P  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0226J12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58797" stop="59456"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGLNLHCELLDMPIRVSTPVGESVIVEKVYRSCPVTFMERNTHVDLVILEMVDFDVILGMTWLSPNFAILDCNAKTVMLAKPGTDPLVWEGDYTSTSVRIISFLHAKRMVIKGCLAFLAHLRDDTTQVPSIESVSIVREFLDVFPADIPGMPPDMDIDFCIDLEPGTRPISIPPYRMAPAKLRELKAQLTELLSKGLIDQVHLLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="61337" PGL_stop="60306"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61337" e_stop="60306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="61337" e_stop="60306" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61337" stop="60796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60892" stop="60306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60892" stop="60306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60892" stop="60339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCATGCAATATTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCTATATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACTTATCTATCGTCTTTGGAAGACCAACCACGAAGTACATTGAAATTCTTTCCCACTTCCATTCAGGAATGGGCATTTTTTGAAGTATCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAGCTATGAGCCTCTACATGAATAGTGTGAACCAAATCATCGACGTGGGGTACACATACCCTTCCCTTAATTCTCAAGACACATTCCTCATTGATTTTTGCTTCTTTAGCCTCTCCTCGCAATACCTTATCTCGGATCCGGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAAAGTCTGAACCTGTCTAGCCAATGGGCGTCTAGAAACCTGTAAGTGGGCTAGGCTTCCCATGCTCCTTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCATCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACTGCCGCTAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACTTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  I  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  S  E  M  *  I  L  A  N  F  S  I  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  Y  L  S  I  V  F  G  R  P  T  T  K  Y  I  E  I  L  S  H  F  H  S  G  M  G  I  F  *  S  I  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  T  *  I  V  *  T  K  S  S  T  W  G  T  H  T  L  P  L  I  L  K  T  H  S  S  L  I  F  A  S  L  A  S  P  R  N  T  L  S  R  I  R  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  S  L  I  K  S  L  A  K  V  *  T  C  L  A  N  G  R  L  E  T  C  K  W  A  R  L  P  M  L  L  A  F  L  L  K  A  S  A  T  T  L  A  F  P  G  *  Y  K  I  V  I  S  *  S  I  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  R  S  C  T  F  N  C </first_frame>
            <second_frame>  Q  H  A  I  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  E  L  H  A  I  E  Q  F  L  R  C  K  F  W  L  T  S  L  Y  Y  K  S  P  *  P  E  *  N  E  Q  T  *  L  I  C  Q  Q  S  P  K  *  S  H  T  Y  L  S  S  L  E  D  Q  P  R  S  T  L  K  F  F  P  T  S  I  Q  E  W  A  F  F  E  V  S  L  Q  A  S  G  V  H  T  L  L  A  D  N  S  G  I  E  Q  Q  N  Q  Q  C  H  A  S  S  Y  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  S  Y  E  P  L  H  E  *  C  E  P  N  H  R  R  G  V  H  I  P  F  P  *  F  S  R  H  I  P  H  *  F  L  L  L  *  P  L  L  A  I  P  Y  L  G  S  G  S  V  S  H  R  *  T  A  F  L  *  S  Y  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  H  L  L  L  A  S  *  S  H  *  P  K  S  E  P  V  *  P  M  G  V  *  K  P  V  S  G  L  G  F  P  C  S  L  P  F  Y  L  R  H  L  P  P  H  *  P  F  P  D  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  I  S  S  V  S  N  S  N  L  S  E  *  R  H  T  V  N  Y  D  D  P  Y  R  L  H  T  *  P  H  I  D  N  A  S  I  A  L  M  Q  T  L  L  P  L  T  P  N  R  G  S  D  N  Y  V  H  A  L  L  I   </second_frame>
            <third_frame>   S  M  Q  Y  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  S  M  Q  S  N  N  F  *  D  V  N  F  G  *  L  L  Y  I  I  S  H  L  D  R  N  E  M  S  R  L  S  *  S  V  N  N  H  P  N  R  V  I  L  I  Y  R  L  W  K  T  N  H  E  V  H  *  N  S  F  P  L  P  F  R  N  G  H  F  L  K  Y  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  I  N  N  V  T  L  H  P  T  P  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  A  M  S  L  Y  M  N  S  V  N  Q  I  I  D  V  G  Y  T  Y  P  S  L  N  S  Q  D  T  F  L  I  D  F  C  F  F  S  L  S  S  Q  Y  L  I  S  D  P  D  Q  F  L  I  G  K  L  L  S  F  N  L  I  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  I  Y  F  *  P  H  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  R  N  L  *  V  G  *  A  S  H  A  P  C  L  S  T  *  G  I  C  H  H  I  S  L  S  R  M  I  Q  D  S  D  I  I  V  H  Q  *  F  H  P  S  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  R  I  D  F  T  L  N  P  I  *  I  M  P  P  L  L  *  C  K  H  Y  C  R  *  L  Q  I  V  G  R  I  I  T  F  M  H  F  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0226J12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60872" stop="60633"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKSSTWGTHTLPLILKTHSSLIFASLASPRNTLSRIRISFSSVNCFPLILSRKEDLASTQAKNPPFSFTSSLIKSLAKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0226J12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60900" stop="60661"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMSLYMNSVNQIIDVGYTYPSLNSQDTFLIDFCFFSLSSQYLISDPDQFLIGKLLSFNLIKKGRSCLHTGQKSSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0226J12.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61147" stop="60911"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTYLSSLEDQPRSTLKFFPTSIQEWAFFEVSLQASGVHTLLADNSGIEQQNQQCHASSYSTKNVALGHDTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="72221" PGL_stop="71580"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72221" e_stop="71580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="72221" e_stop="71580" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72221" stop="71632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72221" stop="71632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72008" stop="71580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATGTGATAAGATGTTGTCTTTAGATGTGCCTACTAGGTGGAATTCCACCTATTTGATGTTAGACACAGTAGAAAAGTTTGAGAAGGCTTTTGAGAGGTTTGATCTTTATGATGGTAATTTTAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCGCAGGGTCAATTCAATGTGAAGATTGGGTTAATGTGAGGAATGTCACAAAGTTTCTTGAAAAATTTTATGAACTCACTTTGAAAGTTTCAGGTTCACGGTATGTTACTTGTAATGTTCATTTTGAATATATATGTGAACTTGATGCTTATTTGAAATTATGTATAGCAAGTGATGACCTTGATTTGAGTAAAATGGCTTCGGGAATGAAAGAAAAATTCAAGAGATATTGGCGGACTCCTGAAAAAATGAACAAAATGATTTTTATTGCTTCTGTTTTGGATCCTCGCAATAAATTTGTCTATGTTAGTTTTGCTCTTGAAGAATTACTTGGGGAAGAAACGGGAAATGTAGTGAATACGAAAGTAGAGGCTTACTTGAGGGATTTGTTTGCGATATATGTAAGTAAGTATGGAAAAGGTTCCAAAAGTCAACCATCTTCATCTGACTCATCTGATTCTTCTGGTAGTGGTATTTC</gDNA_template>
            <first_frame> R  M  *  *  D  V  V  F  R  C  A  Y  *  V  E  F  H  L  F  D  V  R  H  S  R  K  V  *  E  G  F  *  E  V  *  S  L  *  W  *  F  *  F  F  S  C  Y  *  C  L  *  R  W  K  Y  R  R  V  N  S  M  *  R  L  G  *  C  E  E  C  H  K  V  S  *  K  I  L  *  T  H  F  E  S  F  R  F  T  V  C  Y  L  *  C  S  F  *  I  Y  M  *  T  *  C  L  F  E  I  M  Y  S  K  *  *  P  *  F  E  *  N  G  F  G  N  E  R  K  I  Q  E  I  L  A  D  S  *  K  N  E  Q  N  D  F  Y  C  F  C  F  G  S  S  Q  *  I  C  L  C  *  F  C  S  *  R  I  T  W  G  R  N  G  K  C  S  E  Y  E  S  R  G  L  L  E  G  F  V  C  D  I  C  K  *  V  W  K  R  F  Q  K  S  T  I  F  I  *  L  I  *  F  F  W  *  W  Y  F </first_frame>
            <second_frame>  E  C  D  K  M  L  S  L  D  V  P  T  R  W  N  S  T  Y  L  M  L  D  T  V  E  K  F  E  K  A  F  E  R  F  D  L  Y  D  G  N  F  N  S  F  L  A  T  D  V  C  E  D  G  S  I  A  G  S  I  Q  C  E  D  W  V  N  V  R  N  V  T  K  F  L  E  K  F  Y  E  L  T  L  K  V  S  G  S  R  Y  V  T  C  N  V  H  F  E  Y  I  C  E  L  D  A  Y  L  K  L  C  I  A  S  D  D  L  D  L  S  K  M  A  S  G  M  K  E  K  F  K  R  Y  W  R  T  P  E  K  M  N  K  M  I  F  I  A  S  V  L  D  P  R  N  K  F  V  Y  V  S  F  A  L  E  E  L  L  G  E  E  T  G  N  V  V  N  T  K  V  E  A  Y  L  R  D  L  F  A  I  Y  V  S  K  Y  G  K  G  S  K  S  Q  P  S  S  S  D  S  S  D  S  S  G  S  G  I   </second_frame>
            <third_frame>   N  V  I  R  C  C  L  *  M  C  L  L  G  G  I  P  P  I  *  C  *  T  Q  *  K  S  L  R  R  L  L  R  G  L  I  F  M  M  V  I  L  I  L  F  L  L  L  M  F  V  K  M  E  V  S  Q  G  Q  F  N  V  K  I  G  L  M  *  G  M  S  Q  S  F  L  K  N  F  M  N  S  L  *  K  F  Q  V  H  G  M  L  L  V  M  F  I  L  N  I  Y  V  N  L  M  L  I  *  N  Y  V  *  Q  V  M  T  L  I  *  V  K  W  L  R  E  *  K  K  N  S  R  D  I  G  G  L  L  K  K  *  T  K  *  F  L  L  L  L  F  W  I  L  A  I  N  L  S  M  L  V  L  L  L  K  N  Y  L  G  K  K  R  E  M  *  *  I  R  K  *  R  L  T  *  G  I  C  L  R  Y  M  *  V  S  M  E  K  V  P  K  V  N  H  L  H  L  T  H  L  I  L  L  V  V  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0226J12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72220" stop="71582"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECDKMLSLDVPTRWNSTYLMLDTVEKFEKAFERFDLYDGNFNSFLATDVCEDGSIAGSIQCEDWVNVRNVTKFLEKFYELTLKVSGSRYVTCNVHFEYICELDAYLKLCIASDDLDLSKMASGMKEKFKRYWRTPEKMNKMIFIASVLDPRNKFVYVSFALEELLGEETGNVVNTKVEAYLRDLFAIYVSKYGKGSKSQPSSSDSSDSSGSGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="96558" PGL_stop="96982"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96558" e_stop="96982"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="96558" e_stop="96982" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96558" stop="96982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGAAGCAAAATCACCAATTTCGCAGCTACTGTTCACGATAGCAAAACTGAAGCTGCAGGCCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAATATAATATGCTGTCCAAAAATCAGCTCAATCAGACAATAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTATTAGGGCTGAATTTTTTACTGCGAAAAACTGCTCTTTTTTTTCTCTTTTGGCTGCTAAAAAACTCTCTATGTATTTA</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  G  H  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  Y  N  M  L  S  K  N  Q  L  N  Q  T  I  N  E  A  G  I  A  I  *  S  W  L  L  G  L  N  F  L  L  R  K  T  A  L  F  F  L  F  W  L  L  K  N  S  L  C  I   </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  E  A  K  S  P  I  S  Q  L  L  F  T  I  A  K  L  K  L  Q  A  T  K  S  N  S  V  S  S  *  S  K  I  E  M  N  I  I  C  C  P  K  I  S  S  I  R  Q  *  T  K  R  E  S  Q  F  E  V  G  Y  *  G  *  I  F  Y  C  E  K  L  L  F  F  F  S  F  G  C  *  K  T  L  Y  V  F  </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  K  Q  N  H  Q  F  R  S  Y  C  S  R  *  Q  N  *  S  C  R  P  P  N  P  T  L  S  V  P  N  Q  R  L  R  *  I  *  Y  A  V  Q  K  S  A  Q  S  D  N  K  R  S  G  N  R  N  L  K  L  A  I  R  A  E  F  F  T  A  K  N  C  S  F  F  S  L  L  A  A  K  K  L  S  M  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0226J12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="101109" PGL_stop="100686"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101109" e_stop="100686"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="101109" e_stop="100686" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101109" stop="100686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAATCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTAAAATATTGTTCTCCAAAATTGGACACAAAACAAGTGTCAAACAACAAGCAACAACGAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACTAATTTCGCAGCTACTATTCACGACAGCAAAACTGAAGCTTCAGGCCACCAAATCCAACTATGTCAGTTCCTAATTAAAGATTGAGATGAAGATAATATGTTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGAAATCGCAATTTGAAGTTGGCTATTAGGGCTGAATTTTGACTGCGAAAAAACTGCTCTTTTTCTCTCTTTTGGCTGCTAAAAAACTCTCTGTGTATTTG</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  S  R  D  Q  K  L  H  Y  N  H  Q  E  L  K  Y  C  S  P  K  L  D  T  K  Q  V  S  N  N  K  Q  Q  R  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  I  H  D  S  K  T  E  A  S  G  H  Q  I  Q  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  E  I  A  I  *  S  W  L  L  G  L  N  F  D  C  E  K  T  A  L  F  L  S  F  G  C  *  K  T  L  C  V  F  </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  *  N  I  V  L  Q  N  W  T  Q  N  K  C  Q  T  T  S  N  N  E  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  L  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  A  T  K  S  N  Y  V  S  S  *  L  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  K  S  Q  F  E  V  G  Y  *  G  *  I  L  T  A  K  K  L  L  F  F  S  L  L  A  A  K  K  L  S  V  Y  L </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  C  E  E  *  K  I  T  G  P  K  A  P  L  *  S  P  R  V  K  I  L  F  S  K  I  G  H  K  T  S  V  K  Q  Q  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  *  F  R  S  Y  Y  S  R  Q  Q  N  *  S  F  R  P  P  N  P  T  M  S  V  P  N  *  R  L  R  *  R  *  Y  V  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  R  N  L  K  L  A  I  R  A  E  F  *  L  R  K  N  C  S  F  S  L  F  W  L  L  K  N  S  L  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0226J12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="112871" PGL_stop="113171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112871" e_stop="113171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="112871" e_stop="113171" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112871" stop="113171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGGTTTCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGATATTCAGTCCTGTTATTCGGCAGGAAACTATTCGCCTGGTACTGTCACTCGCCGTGCTCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACATCTGAAAACGTT</gDNA_template>
            <first_frame> V  W  F  L  K  A  T  I  R  S  M  G  L  I  T  P  R  Y  S  V  L  L  F  G  R  K  L  F  A  W  Y  C  H  S  P  C  S  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  G  T  H  I  *  K  R  </first_frame>
            <second_frame>  F  G  F  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  Y  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  S  E  N  V </second_frame>
            <third_frame>   L  V  S  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  I  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  A  V  L  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  H  L  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0226J12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112873" stop="113169"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSKGYNQEYGLDYSEIFSPVIRQETIRLVLSLAVLNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDPRFPQHVCKLQKSLYGLKQAPRAWYTHLKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="125705" PGL_stop="126510"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125705" e_stop="126510"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="125705" e_stop="126510" e_length="806"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125705" stop="126510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125705" stop="126359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125705" stop="126174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125706" stop="126422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125822" stop="126506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAAATCCAATTTCTAAGTCATGCTTAGAGTCCTCAACGAAAAGCTGAAGCGCCTCTGTTTTAGTCTCCGGTGGCCAATACGCTGCCGTTCAAAGAACAAAATCAAAATTACTGTGAAAAAACTGGGAAAATCAAATTCAAGTTCTCATTCACAAATTGATCCGTCAAATTCAAATGGGTCAGCAGCAATTCATCCAAGTAATGGCGAATTGAATCGTTCTAAAACTGGACGAACCATACGAGTAGCTACATTTAATGCTGCGCTTTTCTCCATGGCGCCCGCACTTCCAAGGAGTAGTTCTGATAGATCAGCTAGTTTTGATTTTGAAAATGATGAATTTTCGAATTCAAAAGCTAGTAAAATGAGTGATTACTATAATTTAAGAGTGAAATCAGCGAATGATCGACCTAAGAGTATACTCAAACAATCACCTCTTCATCCGACGAAAGAAACAGATACGCTTTTGTTGAAAAGACAAAATTTCTCGAAATCGAAGTTAAGGGTTTCGATTAATTTACCAGATAATGAAATATCTCTGAAGAAAAGTGGGCAATTGAGGATTTTGGGATGTGATAGTGAGAGGTTTTCAGGGAGTGGGATATGTAGAGGAAAATCTCCGTTAAGGTCTACTGTGAGTATGCCTCGAATTGATTGTCAAAGCTATAGAATTACGAGAAGTGTTCTTGAAGTATTGAGAGAATTGAATGCGGATATTCTGGCTTTGCAAGATGTTAAAGCAGAGGAAGAGAAAGGTATGAAGCCGTTATCGGATTTAGCTGATGCTTTGGGGATGAATTATGTATT</gDNA_template>
            <first_frame> V  K  S  N  F  *  V  M  L  R  V  L  N  E  K  L  K  R  L  C  F  S  L  R  W  P  I  R  C  R  S  K  N  K  I  K  I  T  V  K  K  L  G  K  S  N  S  S  S  H  S  Q  I  D  P  S  N  S  N  G  S  A  A  I  H  P  S  N  G  E  L  N  R  S  K  T  G  R  T  I  R  V  A  T  F  N  A  A  L  F  S  M  A  P  A  L  P  R  S  S  S  D  R  S  A  S  F  D  F  E  N  D  E  F  S  N  S  K  A  S  K  M  S  D  Y  Y  N  L  R  V  K  S  A  N  D  R  P  K  S  I  L  K  Q  S  P  L  H  P  T  K  E  T  D  T  L  L  L  K  R  Q  N  F  S  K  S  K  L  R  V  S  I  N  L  P  D  N  E  I  S  L  K  K  S  G  Q  L  R  I  L  G  C  D  S  E  R  F  S  G  S  G  I  C  R  G  K  S  P  L  R  S  T  V  S  M  P  R  I  D  C  Q  S  Y  R  I  T  R  S  V  L  E  V  L  R  E  L  N  A  D  I  L  A  L  Q  D  V  K  A  E  E  E  K  G  M  K  P  L  S  D  L  A  D  A  L  G  M  N  Y  V   </first_frame>
            <second_frame>  S  N  P  I  S  K  S  C  L  E  S  S  T  K  S  *  S  A  S  V  L  V  S  G  G  Q  Y  A  A  V  Q  R  T  K  S  K  L  L  *  K  N  W  E  N  Q  I  Q  V  L  I  H  K  L  I  R  Q  I  Q  M  G  Q  Q  Q  F  I  Q  V  M  A  N  *  I  V  L  K  L  D  E  P  Y  E  *  L  H  L  M  L  R  F  S  P  W  R  P  H  F  Q  G  V  V  L  I  D  Q  L  V  L  I  L  K  M  M  N  F  R  I  Q  K  L  V  K  *  V  I  T  I  I  *  E  *  N  Q  R  M  I  D  L  R  V  Y  S  N  N  H  L  F  I  R  R  K  K  Q  I  R  F  C  *  K  D  K  I  S  R  N  R  S  *  G  F  R  L  I  Y  Q  I  M  K  Y  L  *  R  K  V  G  N  *  G  F  W  D  V  I  V  R  G  F  Q  G  V  G  Y  V  E  E  N  L  R  *  G  L  L  *  V  C  L  E  L  I  V  K  A  I  E  L  R  E  V  F  L  K  Y  *  E  N  *  M  R  I  F  W  L  C  K  M  L  K  Q  R  K  R  K  V  *  S  R  Y  R  I  *  L  M  L  W  G  *  I  M  Y  </second_frame>
            <third_frame>   Q  I  Q  F  L  S  H  A  *  S  P  Q  R  K  A  E  A  P  L  F  *  S  P  V  A  N  T  L  P  F  K  E  Q  N  Q  N  Y  C  E  K  T  G  K  I  K  F  K  F  S  F  T  N  *  S  V  K  F  K  W  V  S  S  N  S  S  K  *  W  R  I  E  S  F  *  N  W  T  N  H  T  S  S  Y  I  *  C  C  A  F  L  H  G  A  R  T  S  K  E  *  F  *  *  I  S  *  F  *  F  *  K  *  *  I  F  E  F  K  S  *  *  N  E  *  L  L  *  F  K  S  E  I  S  E  *  S  T  *  E  Y  T  Q  T  I  T  S  S  S  D  E  R  N  R  Y  A  F  V  E  K  T  K  F  L  E  I  E  V  K  G  F  D  *  F  T  R  *  *  N  I  S  E  E  K  W  A  I  E  D  F  G  M  *  *  *  E  V  F  R  E  W  D  M  *  R  K  I  S  V  K  V  Y  C  E  Y  A  S  N  *  L  S  K  L  *  N  Y  E  K  C  S  *  S  I  E  R  I  E  C  G  Y  S  G  F  A  R  C  *  S  R  G  R  E  R  Y  E  A  V  I  G  F  S  *  C  F  G  D  E  L  C  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0226J12.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125723" stop="126508"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMLRVLNEKLKRLCFSLRWPIRCRSKNKIKITVKKLGKSNSSSHSQIDPSNSNGSAAIHPSNGELNRSKTGRTIRVATFNAALFSMAPALPRSSSDRSASFDFENDEFSNSKASKMSDYYNLRVKSANDRPKSILKQSPLHPTKETDTLLLKRQNFSKSKLRVSINLPDNEISLKKSGQLRILGCDSERFSGSGICRGKSPLRSTVSMPRIDCQSYRITRSVLEVLRELNADILALQDVKAEEEKGMKPLSDLADALGMNYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="128587" PGL_stop="128334"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128587" e_stop="128334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="128587" e_stop="128334" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128587" stop="128334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGGTAGTTGAGCTCAAACTGCTTTAGATATGTAGTTCAATCACAAGTTGTGTCATATAAATTATGTCATCTATTCCTTTTACATCTTCCTTTTCTAAAGCAAGGTGTAATGAAGTGGAAACAACACTTTTCCCACCCTAAAAGATATCTTTCTTTACAAAGAACAGAGAAGAAAGCATAAAGCCATACATCAATCACAATAATTAACAATCTACCTATGTTTACTTTTCATGTGTCTATTTTCCATATACC</gDNA_template>
            <first_frame> D  R  *  L  S  S  N  C  F  R  Y  V  V  Q  S  Q  V  V  S  Y  K  L  C  H  L  F  L  L  H  L  P  F  L  K  Q  G  V  M  K  W  K  Q  H  F  S  H  P  K  R  Y  L  S  L  Q  R  T  E  K  K  A  *  S  H  T  S  I  T  I  I  N  N  L  P  M  F  T  F  H  V  S  I  F  H  I   </first_frame>
            <second_frame>  I  G  S  *  A  Q  T  A  L  D  M  *  F  N  H  K  L  C  H  I  N  Y  V  I  Y  S  F  Y  I  F  L  F  *  S  K  V  *  *  S  G  N  N  T  F  P  T  L  K  D  I  F  L  Y  K  E  Q  R  R  K  H  K  A  I  H  Q  S  Q  *  L  T  I  Y  L  C  L  L  F  M  C  L  F  S  I  Y  </second_frame>
            <third_frame>   *  V  V  E  L  K  L  L  *  I  C  S  S  I  T  S  C  V  I  *  I  M  S  S  I  P  F  T  S  S  F  S  K  A  R  C  N  E  V  E  T  T  L  F  P  P  *  K  I  S  F  F  T  K  N  R  E  E  S  I  K  P  Y  I  N  H  N  N  *  Q  S  T  Y  V  Y  F  S  C  V  Y  F  P  Y  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0226J12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="132800" PGL_stop="134162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132800" e_stop="134162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="132800" e_stop="134162" e_length="1363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132800" stop="133229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132802" stop="133478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132802" stop="133338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133471" stop="134162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAGTTTAGAAATCTGTTTATGTATTTGACCAAATAAATACATACTATTCTTCTTTCAGTCTCAATTTATATGGTATATATGTCCGTTTGTTTCACGCAAGAATGTCACTTTAACTTTAAAATTCTCCTTTTTTAAGTGAGATGAATCAATGAGTACAAATGAAAATATGTGATCCATGATACAACAAACACTCAAATGTCTTAAATTTGAGGATGAGAATCAGATCGAATGTAGTTTCAAACGACAACATGAATTGTGTCAACTCTCTCTGATAAAGTAAATTTCAGTACGAAAGATGAATCGATGAAGGCTAAGGTATTTCATGATGCATTGATAGCAGCCTGGATTTGTTCCAAAGTTCTTCCTTTGGTTTCAGGTACTATTTTTATCACAAATAATATGGACAGTGCATTCACTGCAGCATACAGAACGAACGTACCTGAAAAACAGTTAAAATTAACTAATGTTAGTTGAAATATCTCATCTTTAGAAATGATATTTGTGATAATGATTGACGACTGTTTAGTTACCAAAAGAATTCCAGGTCATGAGGAAGTTGAAAGTGTAGGAGCACGCCCATGCTCCGAACCAATTCACTAGTGTTGCAAGGCTCCCAGCAGCACCTTTAATATTTATAGGATATATCTGTACGAAAGGCGTTTCTTAGCCTTAAAAATGTTAGTTGGAGGATTCAGGATGGTATAGATTAACATACCTCTGACATCACAACCCACGGAACTGCTCCCATTCCTACTGAAAAGGAACCGATATAGACCTGGCGTTTGAGAACAAGTATTACATAAACTGAAATGAGGGAGCGTTGGGGTCGGGGACAATTTTAGAAAGGACAGTGATGGTACCAGTATGCCTGTTACAGCAAGTATCGGTGCTGCCTTTATTGCCATTTCATGTCCCTGCAGCTCCAATAATAATTTAATTTTTTTCGTCAAAGAGTTCTTGAGATATATAATAAGAATAGTAAGCAGTTTTGGTTATAATGTTGACCTTCATATAGAATGAGATTCCTGTTAGTATACAGCCTATGACAAGTCCTGTTCCTGAAACCTGCAAGGATATCGCGATGATTATATTCTGTGACTGCAACATGTAATATCCTCAAGAAAATGGTTTTCTTTTCCGAGATGTACCAATAAAAGAGGTTTTCTTCCAGTTCTGTCGATTAAGGCTGCACCCAACGCGGTGATGGGAACCTGATGAAGAAAATAAAGTAAAAAAGTGAATTATCCGTTATAACACCAAGCTTTAAGAGGGAGATATCTAACATCCATAGAGTAGAAACCTGTATAATTGCATAGATTATAGTTCCAATATCAGAGGGGAAACCTGGAAAAGAAATACA</gDNA_template>
            <first_frame> N  K  F  R  N  L  F  M  Y  L  T  K  *  I  H  T  I  L  L  S  V  S  I  Y  M  V  Y  M  S  V  C  F  T  Q  E  C  H  F  N  F  K  I  L  L  F  *  V  R  *  I  N  E  Y  K  *  K  Y  V  I  H  D  T  T  N  T  Q  M  S  *  I  *  G  *  E  S  D  R  M  *  F  Q  T  T  T  *  I  V  S  T  L  S  D  K  V  N  F  S  T  K  D  E  S  M  K  A  K  V  F  H  D  A  L  I  A  A  W  I  C  S  K  V  L  P  L  V  S  G  T  I  F  I  T  N  N  M  D  S  A  F  T  A  A  Y  R  T  N  V  P  E  K  Q  L  K  L  T  N  V  S  *  N  I  S  S  L  E  M  I  F  V  I  M  I  D  D  C  L  V  T  K  R  I  P  G  H  E  E  V  E  S  V  G  A  R  P  C  S  E  P  I  H  *  C  C  K  A  P  S  S  T  F  N  I  Y  R  I  Y  L  Y  E  R  R  F  L  A  L  K  M  L  V  G  G  F  R  M  V  *  I  N  I  P  L  T  S  Q  P  T  E  L  L  P  F  L  L  K  R  N  R  Y  R  P  G  V  *  E  Q  V  L  H  K  L  K  *  G  S  V  G  V  G  D  N  F  R  K  D  S  D  G  T  S  M  P  V  T  A  S  I  G  A  A  F  I  A  I  S  C  P  C  S  S  N  N  N  L  I  F  F  V  K  E  F  L  R  Y  I  I  R  I  V  S  S  F  G  Y  N  V  D  L  H  I  E  *  D  S  C  *  Y  T  A  Y  D  K  S  C  S  *  N  L  Q  G  Y  R  D  D  Y  I  L  *  L  Q  H  V  I  S  S  R  K  W  F  S  F  P  R  C  T  N  K  R  G  F  L  P  V  L  S  I  K  A  A  P  N  A  V  M  G  T  *  *  R  K  *  S  K  K  V  N  Y  P  L  *  H  Q  A  L  R  G  R  Y  L  T  S  I  E  *  K  P  V  *  L  H  R  L  *  F  Q  Y  Q  R  G  N  L  E  K  K  Y  </first_frame>
            <second_frame>  T  S  L  E  I  C  L  C  I  *  P  N  K  Y  I  L  F  F  F  Q  S  Q  F  I  W  Y  I  C  P  F  V  S  R  K  N  V  T  L  T  L  K  F  S  F  F  K  *  D  E  S  M  S  T  N  E  N  M  *  S  M  I  Q  Q  T  L  K  C  L  K  F  E  D  E  N  Q  I  E  C  S  F  K  R  Q  H  E  L  C  Q  L  S  L  I  K  *  I  S  V  R  K  M  N  R  *  R  L  R  Y  F  M  M  H  *  *  Q  P  G  F  V  P  K  F  F  L  W  F  Q  V  L  F  L  S  Q  I  I  W  T  V  H  S  L  Q  H  T  E  R  T  Y  L  K  N  S  *  N  *  L  M  L  V  E  I  S  H  L  *  K  *  Y  L  *  *  *  L  T  T  V  *  L  P  K  E  F  Q  V  M  R  K  L  K  V  *  E  H  A  H  A  P  N  Q  F  T  S  V  A  R  L  P  A  A  P  L  I  F  I  G  Y  I  C  T  K  G  V  S  *  P  *  K  C  *  L  E  D  S  G  W  Y  R  L  T  Y  L  *  H  H  N  P  R  N  C  S  H  S  Y  *  K  G  T  D  I  D  L  A  F  E  N  K  Y  Y  I  N  *  N  E  G  A  L  G  S  G  T  I  L  E  R  T  V  M  V  P  V  C  L  L  Q  Q  V  S  V  L  P  L  L  P  F  H  V  P  A  A  P  I  I  I  *  F  F  S  S  K  S  S  *  D  I  *  *  E  *  *  A  V  L  V  I  M  L  T  F  I  *  N  E  I  P  V  S  I  Q  P  M  T  S  P  V  P  E  T  C  K  D  I  A  M  I  I  F  C  D  C  N  M  *  Y  P  Q  E  N  G  F  L  F  R  D  V  P  I  K  E  V  F  F  Q  F  C  R  L  R  L  H  P  T  R  *  W  E  P  D  E  E  N  K  V  K  K  *  I  I  R  Y  N  T  K  L  *  E  G  D  I  *  H  P  *  S  R  N  L  Y  N  C  I  D  Y  S  S  N  I  R  G  E  T  W  K  R  N  T </second_frame>
            <third_frame>   Q  V  *  K  S  V  Y  V  F  D  Q  I  N  T  Y  Y  S  S  F  S  L  N  L  Y  G  I  Y  V  R  L  F  H  A  R  M  S  L  *  L  *  N  S  P  F  L  S  E  M  N  Q  *  V  Q  M  K  I  C  D  P  *  Y  N  K  H  S  N  V  L  N  L  R  M  R  I  R  S  N  V  V  S  N  D  N  M  N  C  V  N  S  L  *  *  S  K  F  Q  Y  E  R  *  I  D  E  G  *  G  I  S  *  C  I  D  S  S  L  D  L  F  Q  S  S  S  F  G  F  R  Y  Y  F  Y  H  K  *  Y  G  Q  C  I  H  C  S  I  Q  N  E  R  T  *  K  T  V  K  I  N  *  C  *  L  K  Y  L  I  F  R  N  D  I  C  D  N  D  *  R  L  F  S  Y  Q  K  N  S  R  S  *  G  S  *  K  C  R  S  T  P  M  L  R  T  N  S  L  V  L  Q  G  S  Q  Q  H  L  *  Y  L  *  D  I  S  V  R  K  A  F  L  S  L  K  N  V  S  W  R  I  Q  D  G  I  D  *  H  T  S  D  I  T  T  H  G  T  A  P  I  P  T  E  K  E  P  I  *  T  W  R  L  R  T  S  I  T  *  T  E  M  R  E  R  W  G  R  G  Q  F  *  K  G  Q  *  W  Y  Q  Y  A  C  Y  S  K  Y  R  C  C  L  Y  C  H  F  M  S  L  Q  L  Q  *  *  F  N  F  F  R  Q  R  V  L  E  I  Y  N  K  N  S  K  Q  F  W  L  *  C  *  P  S  Y  R  M  R  F  L  L  V  Y  S  L  *  Q  V  L  F  L  K  P  A  R  I  S  R  *  L  Y  S  V  T  A  T  C  N  I  L  K  K  M  V  F  F  S  E  M  Y  Q  *  K  R  F  S  S  S  S  V  D  *  G  C  T  Q  R  G  D  G  N  L  M  K  K  I  K  *  K  S  E  L  S  V  I  T  P  S  F  K  R  E  I  S  N  I  H  R  V  E  T  C  I  I  A  *  I  I  V  P  I  S  E  G  K  P  G  K  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0226J12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133055" stop="133276"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVSTLSDKVNFSTKDESMKAKVFHDALIAAWICSKVLPLVSGTIFITNNMDSAFTAAYRTNVPEKQLKLTNVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0226J12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133616" stop="133822"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSVGVGDNFRKDSDGTSMPVTASIGAAFIAISCPCSSNNNLIFFVKEFLRYIIRIVSSFGYNVDLHIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="136853" PGL_stop="132886"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136853" e_stop="136616"/>
            <exon e_start="136453" e_stop="136391"/>
            <exon e_start="135818" e_stop="135729"/>
            <exon e_start="135630" e_stop="135571"/>
            <exon e_start="135479" e_stop="135414"/>
            <exon e_start="135320" e_stop="135255"/>
            <exon e_start="135023" e_stop="134948"/>
            <exon e_start="134857" e_stop="134793"/>
            <exon e_start="134705" e_stop="134613"/>
            <exon e_start="134530" e_stop="134450"/>
            <exon e_start="134359" e_stop="134275"/>
            <exon e_start="134146" e_stop="134103"/>
            <exon e_start="134013" e_stop="133951"/>
            <exon e_start="133867" e_stop="133808"/>
            <exon e_start="133716" e_stop="133663"/>
            <exon e_start="133577" e_stop="133518"/>
            <exon e_start="133447" e_stop="133333"/>
            <exon e_start="133241" e_stop="132886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.671" acc_prob="0.994" e_score="0.971"/>
          <exon-intron don_prob="0.993" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.906" acc_prob="0.653" e_score="1.000"/>
          <exon-intron don_prob="0.665" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.800" e_score="1.000"/>
          <exon-intron don_prob="0.786" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.575" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.648" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.470" acc_prob="0.849" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.510" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.394" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="136853" e_stop="136616" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.671" acc_prob="0.994">
            <gDNA_intron_boundary i_start="136615" i_stop="136454" i_length="162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="136453" e_stop="136391" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.938">
            <gDNA_intron_boundary i_start="136390" i_stop="135819" i_length="572"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="135818" e_stop="135729" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.906" acc_prob="0.653">
            <gDNA_intron_boundary i_start="135728" i_stop="135631" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="135630" e_stop="135571" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.665" acc_prob="0.998">
            <gDNA_intron_boundary i_start="135570" i_stop="135480" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="135479" e_stop="135414" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.980">
            <gDNA_intron_boundary i_start="135413" i_stop="135321" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="135320" e_stop="135255" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.800">
            <gDNA_intron_boundary i_start="135254" i_stop="135024" i_length="231"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="135023" e_stop="134948" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.786" acc_prob="0.930">
            <gDNA_intron_boundary i_start="134947" i_stop="134858" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="134857" e_stop="134793" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.575" acc_prob="0.908">
            <gDNA_intron_boundary i_start="134792" i_stop="134706" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="134705" e_stop="134613" e_length="93"/>
          </exon>
          <intron i_serial="9" don_prob="0.948" acc_prob="0.989">
            <gDNA_intron_boundary i_start="134612" i_stop="134531" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="134530" e_stop="134450" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.648" acc_prob="0.960">
            <gDNA_intron_boundary i_start="134449" i_stop="134360" i_length="90"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="134359" e_stop="134275" e_length="85"/>
          </exon>
          <intron i_serial="11" don_prob="0.984" acc_prob="0.906">
            <gDNA_intron_boundary i_start="134274" i_stop="134147" i_length="128"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="134146" e_stop="134103" e_length="44"/>
          </exon>
          <intron i_serial="12" don_prob="0.940" acc_prob="0.999">
            <gDNA_intron_boundary i_start="134102" i_stop="134014" i_length="89"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="134013" e_stop="133951" e_length="63"/>
          </exon>
          <intron i_serial="13" don_prob="0.470" acc_prob="0.849">
            <gDNA_intron_boundary i_start="133950" i_stop="133868" i_length="83"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="133867" e_stop="133808" e_length="60"/>
          </exon>
          <intron i_serial="14" don_prob="0.962" acc_prob="0.988">
            <gDNA_intron_boundary i_start="133807" i_stop="133717" i_length="91"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="133716" e_stop="133663" e_length="54"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.510">
            <gDNA_intron_boundary i_start="133662" i_stop="133578" i_length="85"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="133577" e_stop="133518" e_length="60"/>
          </exon>
          <intron i_serial="16" don_prob="0.986" acc_prob="0.394">
            <gDNA_intron_boundary i_start="133517" i_stop="133448" i_length="70"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="133447" e_stop="133333" e_length="115"/>
          </exon>
          <intron i_serial="17" don_prob="0.889" acc_prob="0.989">
            <gDNA_intron_boundary i_start="133332" i_stop="133242" i_length="91"/>
          </intron>
          <exon e_serial="18" e_score="0.997">
            <gDNA_exon_boundary e_start="133241" e_stop="132886" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136853" stop="136616"/>
              <exon start="136453" stop="136391"/>
              <exon start="135818" stop="135729"/>
              <exon start="135630" stop="135577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136821" stop="136616"/>
              <exon start="136453" stop="136391"/>
              <exon start="135818" stop="135729"/>
              <exon start="135630" stop="135571"/>
              <exon start="135479" stop="135414"/>
              <exon start="135320" stop="135255"/>
              <exon start="135023" stop="134948"/>
              <exon start="134857" stop="134793"/>
              <exon start="134705" stop="134613"/>
              <exon start="134530" stop="134450"/>
              <exon start="134359" stop="134275"/>
              <exon start="134146" stop="134103"/>
              <exon start="134013" stop="133951"/>
              <exon start="133867" stop="133808"/>
              <exon start="133716" stop="133663"/>
              <exon start="133577" stop="133518"/>
              <exon start="133447" stop="133333"/>
              <exon start="133241" stop="132911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136804" stop="136616"/>
              <exon start="136453" stop="136391"/>
              <exon start="135818" stop="135729"/>
              <exon start="135630" stop="135571"/>
              <exon start="135479" stop="135414"/>
              <exon start="135320" stop="135255"/>
              <exon start="135023" stop="134948"/>
              <exon start="134857" stop="134834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136804" stop="136616"/>
              <exon start="136453" stop="136391"/>
              <exon start="135818" stop="135729"/>
              <exon start="135630" stop="135571"/>
              <exon start="135479" stop="135414"/>
              <exon start="135320" stop="135294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136800" stop="136616"/>
              <exon start="136453" stop="136391"/>
              <exon start="135818" stop="135729"/>
              <exon start="135630" stop="135571"/>
              <exon start="135479" stop="135414"/>
              <exon start="135320" stop="135266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136758" stop="136616"/>
              <exon start="136453" stop="136391"/>
              <exon start="135818" stop="135729"/>
              <exon start="135630" stop="135571"/>
              <exon start="135479" stop="135414"/>
              <exon start="135320" stop="135255"/>
              <exon start="135023" stop="134948"/>
              <exon start="134857" stop="134793"/>
              <exon start="134705" stop="134639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136758" stop="136616"/>
              <exon start="136453" stop="136391"/>
              <exon start="135818" stop="135729"/>
              <exon start="135630" stop="135571"/>
              <exon start="135479" stop="135421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135471" stop="135414"/>
              <exon start="135320" stop="135255"/>
              <exon start="135023" stop="134948"/>
              <exon start="134857" stop="134793"/>
              <exon start="134705" stop="134613"/>
              <exon start="134530" stop="134498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135303" stop="135255"/>
              <exon start="135023" stop="134948"/>
              <exon start="134857" stop="134793"/>
              <exon start="134705" stop="134613"/>
              <exon start="134530" stop="134481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134834" stop="134793"/>
              <exon start="134705" stop="134613"/>
              <exon start="134530" stop="134450"/>
              <exon start="134359" stop="134275"/>
              <exon start="134146" stop="134103"/>
              <exon start="134013" stop="133951"/>
              <exon start="133867" stop="133808"/>
              <exon start="133716" stop="133706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134665" stop="134613"/>
              <exon start="134530" stop="134450"/>
              <exon start="134359" stop="134275"/>
              <exon start="134146" stop="134103"/>
              <exon start="134013" stop="133951"/>
              <exon start="133867" stop="133808"/>
              <exon start="133716" stop="133663"/>
              <exon start="133577" stop="133518"/>
              <exon start="133447" stop="133333"/>
              <exon start="133241" stop="133091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134114" stop="134103"/>
              <exon start="134013" stop="133951"/>
              <exon start="133867" stop="133808"/>
              <exon start="133716" stop="133663"/>
              <exon start="133577" stop="133518"/>
              <exon start="133447" stop="133333"/>
              <exon start="133241" stop="132886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATATCTTCTTTCTTAATTTTCTATATTTTTAAGGCAAAAGAAGAAAAAAAATTATGAAGGAAGATATAGAGCAAAGTGAGAACAGAGTAAATGAAGAAATAACAACTCCTCTTATAATTCAAACAAATAAAAGAGTAAAAGAAGAAAATGGATGTTATGAGAAGAAACAAGATAGGTGCATGGTTTACCTTAGCACATTTGTGGCTGTTTGTGGTTCATATTCATTTGGATCTTGT : GCTGGATATTCATCACCAACACAATCCGCCATCAGAGAGGATCTTAACTTATCTATAGCAGAG : TTCTCGCTCTTTGGTTCAATATTGACATTTGGTGCAATGATTGGAGCAATCACAAGTGGTCCAATCGCTGATTATATTGGTCGCAAAGGG : GCAATGAGAATGTCAAGTGGTTTCTGTGTTGCTGGATGGTTAGCTATTTTCTTCGCTCAG : GGAGCACTTGCTCTGGACATTGGAAGATTGGCAACAGGATATGGAATGGGAGTTTTCTCTTATGTG : GTGCCGGTATTTATAGCTGAAATTGCACCTAAAGATTTACGAGGAGCTTTGACAACCATAAACCAG : CTGATGATATGTTGTGGAGTCTCAGTTTCCTTCATTATAGGAACTATGATGACATGGAGGACGTTGGCGTTAACAG : GATTAATTCCATGTGCTATTCTGCTTTTCGGTCTATTTATCATTCCAGAGTCACCTAGGTGGTTG : GCAAAAATAGGACATCAAAAGGAGTTTGAACTTGCACTACGTAAACTTCGAGGCAAAGATGCTGATATATCTGAGGAGGCAGCTGAAATCAAG : GATTATATAGAAACACTTGAAAAGCTTCCGAAAGTGAACTTGTTTGATTTGTTCCAAAGAAGATACTCGAGCTCACTTATA : GTGGGAGTTGGACTTATGGTGTTTCAACAGTTTGGTGGAATCAATGGAATCTGTTTCTACACCGGTAGCATATTTGAGTCCTCAG : GTTTCCCCTCTGATATTGGAACTATAATCTATGCAATTATACAG : GTTCCCATCACCGCGTTGGGTGCAGCCTTAATCGACAGAACTGGAAGAAAACCTCTTTTATTG : GTTTCAGGAACAGGACTTGTCATAGGCTGTATACTAACAGGAATCTCATTCTATATGAAG : GGACATGAAATGGCAATAAAGGCAGCACCGATACTTGCTGTAACAGGCATACTG : GTCTATATCGGTTCCTTTTCAGTAGGAATGGGAGCAGTTCCGTGGGTTGTGATGTCAGAG : ATATATCCTATAAATATTAAAGGTGCTGCTGGGAGCCTTGCAACACTAGTGAATTGGTTCGGAGCATGGGCGTGCTCCTACACTTTCAACTTCCTCATGACCTGGAATTCTTTTG : GTACGTTCGTTCTGTATGCTGCAGTGAATGCACTGTCCATATTATTTGTGATAAAAATAGTACCTGAAACCAAAGGAAGAACTTTGGAACAAATCCAGGCTGCTATCAATGCATCATGAAATACCTTAGCCTTCATCGATTCATCTTTCGTACTGAAATTTACTTTATCAGAGAGAGTTGACACAATTCATGTTGTCGTTTGAAACTACATTCGATCTGATTCTCATCCTCAAATTTAAGACATTTGAGTGTTTGTTGTATCATGGATCACATATTTTCATTTGTACTCATTGATTCATCTCACTTAAAAAAGGAGAATTTTAAAGTTAAAGTGACATTCTTGCGTGAAACAAACG</gDNA_template>
            <first_frame> K  Y  L  L  S  *  F  S  I  F  L  R  Q  K  K  K  K  N  Y  E  G  R  Y  R  A  K  *  E  Q  S  K  *  R  N  N  N  S  S  Y  N  S  N  K  *  K  S  K  R  R  K  W  M  L  *  E  E  T  R  *  V  H  G  L  P  *  H  I  C  G  C  L  W  F  I  F  I  W  I  L   : C  W  I  F  I  T  N  T  I  R  H  Q  R  G  S  *  L  I  Y  S  R   : V  L  A  L  W  F  N  I  D  I  W  C  N  D  W  S  N  H  K  W  S  N  R  *  L  Y  W  S  Q  R   : G  N  E  N  V  K  W  F  L  C  C  W  M  V  S  Y  F  L  R  S   : G  S  T  C  S  G  H  W  K  I  G  N  R  I  W  N  G  S  F  L  L  C   : G  A  G  I  Y  S  *  N  C  T  *  R  F  T  R  S  F  D  N  H  K  P   : A  D  D  M  L  W  S  L  S  F  L  H  Y  R  N  Y  D  D  M  E  D  V  G  V  N  R :   I  N  S  M  C  Y  S  A  F  R  S  I  Y  H  S  R  V  T  *  V  V   : G  K  N  R  T  S  K  G  V  *  T  C  T  T  *  T  S  R  Q  R  C  *  Y  I  *  G  G  S  *  N  Q   : G  L  Y  R  N  T  *  K  A  S  E  S  E  L  V  *  F  V  P  K  K  I  L  E  L  T  Y   : S  G  S  W  T  Y  G  V  S  T  V  W  W  N  Q  W  N  L  F  L  H  R  *  H  I  *  V  L  R :   F  P  L  *  Y  W  N  Y  N  L  C  N  Y  T   : G  S  H  H  R  V  G  C  S  L  N  R  Q  N  W  K  K  T  S  F  I   : G  F  R  N  R  T  C  H  R  L  Y  T  N  R  N  L  I  L  Y  E   : G  T  *  N  G  N  K  G  S  T  D  T  C  C  N  R  H  T   : G  L  Y  R  F  L  F  S  R  N  G  S  S  S  V  G  C  D  V  R   : D  I  S  Y  K  Y  *  R  C  C  W  E  P  C  N  T  S  E  L  V  R  S  M  G  V  L  L  H  F  Q  L  P  H  D  L  E  F  F  W :   Y  V  R  S  V  C  C  S  E  C  T  V  H  I  I  C  D  K  N  S  T  *  N  Q  R  K  N  F  G  T  N  P  G  C  Y  Q  C  I  M  K  Y  L  S  L  H  R  F  I  F  R  T  E  I  Y  F  I  R  E  S  *  H  N  S  C  C  R  L  K  L  H  S  I  *  F  S  S  S  N  L  R  H  L  S  V  C  C  I  M  D  H  I  F  S  F  V  L  I  D  S  S  H  L  K  K  E  N  F  K  V  K  V  T  F  L  R  E  T  N  </first_frame>
            <second_frame>  N  I  F  F  L  N  F  L  Y  F  *  G  K  R  R  K  K  I  M  K  E  D  I  E  Q  S  E  N  R  V  N  E  E  I  T  T  P  L  I  I  Q  T  N  K  R  V  K  E  E  N  G  C  Y  E  K  K  Q  D  R  C  M  V  Y  L  S  T  F  V  A  V  C  G  S  Y  S  F  G  S  C  :  A  G  Y  S  S  P  T  Q  S  A  I  R  E  D  L  N  L  S  I  A  E  :  F  S  L  F  G  S  I  L  T  F  G  A  M  I  G  A  I  T  S  G  P  I  A  D  Y  I  G  R  K  G  :  A  M  R  M  S  S  G  F  C  V  A  G  W  L  A  I  F  F  A  Q  :  G  A  L  A  L  D  I  G  R  L  A  T  G  Y  G  M  G  V  F  S  Y  V  :  V  P  V  F  I  A  E  I  A  P  K  D  L  R  G  A  L  T  T  I  N  Q  :  L  M  I  C  C  G  V  S  V  S  F  I  I  G  T  M  M  T  W  R  T  L  A  L  T   : G  L  I  P  C  A  I  L  L  F  G  L  F  I  I  P  E  S  P  R  W  L  :  A  K  I  G  H  Q  K  E  F  E  L  A  L  R  K  L  R  G  K  D  A  D  I  S  E  E  A  A  E  I  K  :  D  Y  I  E  T  L  E  K  L  P  K  V  N  L  F  D  L  F  Q  R  R  Y  S  S  S  L  I  :  V  G  V  G  L  M  V  F  Q  Q  F  G  G  I  N  G  I  C  F  Y  T  G  S  I  F  E  S  S   : G  F  P  S  D  I  G  T  I  I  Y  A  I  I  Q  :  V  P  I  T  A  L  G  A  A  L  I  D  R  T  G  R  K  P  L  L  L  :  V  S  G  T  G  L  V  I  G  C  I  L  T  G  I  S  F  Y  M  K  :  G  H  E  M  A  I  K  A  A  P  I  L  A  V  T  G  I  L  :  V  Y  I  G  S  F  S  V  G  M  G  A  V  P  W  V  V  M  S  E  :  I  Y  P  I  N  I  K  G  A  A  G  S  L  A  T  L  V  N  W  F  G  A  W  A  C  S  Y  T  F  N  F  L  M  T  W  N  S  F   : G  T  F  V  L  Y  A  A  V  N  A  L  S  I  L  F  V  I  K  I  V  P  E  T  K  G  R  T  L  E  Q  I  Q  A  A  I  N  A  S  *  N  T  L  A  F  I  D  S  S  F  V  L  K  F  T  L  S  E  R  V  D  T  I  H  V  V  V  *  N  Y  I  R  S  D  S  H  P  Q  I  *  D  I  *  V  F  V  V  S  W  I  T  Y  F  H  L  Y  S  L  I  H  L  T  *  K  R  R  I  L  K  L  K  *  H  S  C  V  K  Q  T </second_frame>
            <third_frame>   I  S  S  F  L  I  F  Y  I  F  K  A  K  E  E  K  K  L  *  R  K  I  *  S  K  V  R  T  E  *  M  K  K  *  Q  L  L  L  *  F  K  Q  I  K  E  *  K  K  K  M  D  V  M  R  R  N  K  I  G  A  W  F  T  L  A  H  L  W  L  F  V  V  H  I  H  L  D  L  V :   L  D  I  H  H  Q  H  N  P  P  S  E  R  I  L  T  Y  L  *  Q  S :   S  R  S  L  V  Q  Y  *  H  L  V  Q  *  L  E  Q  S  Q  V  V  Q  S  L  I  I  L  V  A  K  G :   Q  *  E  C  Q  V  V  S  V  L  L  D  G  *  L  F  S  S  L  R :   E  H  L  L  W  T  L  E  D  W  Q  Q  D  M  E  W  E  F  S  L  M  W :   C  R  Y  L  *  L  K  L  H  L  K  I  Y  E  E  L  *  Q  P  *  T  S :   *  *  Y  V  V  E  S  Q  F  P  S  L  *  E  L  *  *  H  G  G  R  W  R  *  Q  :  D  *  F  H  V  L  F  C  F  S  V  Y  L  S  F  Q  S  H  L  G  G  W :   Q  K  *  D  I  K  R  S  L  N  L  H  Y  V  N  F  E  A  K  M  L  I  Y  L  R  R  Q  L  K  S  R :   I  I  *  K  H  L  K  S  F  R  K  *  T  C  L  I  C  S  K  E  D  T  R  A  H  L  * :   W  E  L  D  L  W  C  F  N  S  L  V  E  S  M  E  S  V  S  T  P  V  A  Y  L  S  P  Q  :  V  S  P  L  I  L  E  L  *  S  M  Q  L  Y  R :   F  P  S  P  R  W  V  Q  P  *  S  T  E  L  E  E  N  L  F  Y  W :   F  Q  E  Q  D  L  S  *  A  V  Y  *  Q  E  S  H  S  I  *  R :   D  M  K  W  Q  *  R  Q  H  R  Y  L  L  *  Q  A  Y  W :   S  I  S  V  P  F  Q  *  E  W  E  Q  F  R  G  L  *  C  Q  R :   Y  I  L  *  I  L  K  V  L  L  G  A  L  Q  H  *  *  I  G  S  E  H  G  R  A  P  T  L  S  T  S  S  *  P  G  I  L  L  :  V  R  S  F  C  M  L  Q  *  M  H  C  P  Y  Y  L  *  *  K  *  Y  L  K  P  K  E  E  L  W  N  K  S  R  L  L  S  M  H  H  E  I  P  *  P  S  S  I  H  L  S  Y  *  N  L  L  Y  Q  R  E  L  T  Q  F  M  L  S  F  E  T  T  F  D  L  I  L  I  L  K  F  K  T  F  E  C  L  L  Y  H  G  S  H  I  F  I  C  T  H  *  F  I  S  L  K  K  G  E  F  *  S  *  S  D  I  L  A  *  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0226J12.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136819" stop="136616"/>
                    <exon start="136453" stop="136391"/>
                    <exon start="135818" stop="135729"/>
                    <exon start="135630" stop="135571"/>
                    <exon start="135479" stop="135414"/>
                    <exon start="135320" stop="135255"/>
                    <exon start="135023" stop="134948"/>
                    <exon start="134857" stop="134793"/>
                    <exon start="134705" stop="134613"/>
                    <exon start="134530" stop="134450"/>
                    <exon start="134359" stop="134275"/>
                    <exon start="134146" stop="134103"/>
                    <exon start="134013" stop="133951"/>
                    <exon start="133867" stop="133808"/>
                    <exon start="133716" stop="133663"/>
                    <exon start="133577" stop="133518"/>
                    <exon start="133447" stop="133333"/>
                    <exon start="133241" stop="133123"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1461</number_coding_nucleotides>
                  <number_encoded_amino_acids>487</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKRRKKIMKEDIEQSENRVNEEITTPLIIQTNKRVKEENGCYEKKQDRCMVYLSTFVAVCGSYSFGSCAGYSSPTQSAIREDLNLSIAEFSLFGSILTFGAMIGAITSGPIADYIGRKGAMRMSSGFCVAGWLAIFFAQGALALDIGRLATGYGMGVFSYVVPVFIAEIAPKDLRGALTTINQLMICCGVSVSFIIGTMMTWRTLALTGLIPCAILLFGLFIIPESPRWLAKIGHQKEFELALRKLRGKDADISEEAAEIKDYIETLEKLPKVNLFDLFQRRYSSSLIVGVGLMVFQQFGGINGICFYTGSIFESSGFPSDIGTIIYAIIQVPITALGAALIDRTGRKPLLLVSGTGLVIGCILTGISFYMKGHEMAIKAAPILAVTGILVYIGSFSVGMGAVPWVVMSEIYPINIKGAAGSLATLVNWFGAWACSYTFNFLMTWNSFGTFVLYAAVNALSILFVIKIVPETKGRTLEQIQAAINAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="142662" PGL_stop="141767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142662" e_stop="141767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="142662" e_stop="141767" e_length="896"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142662" stop="141967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142662" stop="142034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142661" stop="142154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142400" stop="141767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGGAAGAGGAAAATTGGGTTGGCAAAAAAGTGGAATACTAAGAGATTGGAGAGTAACTTGAGTTCTCGTTTGGATTCGATTAGTGGAAGTACTACTTTGATTAGGTATAGTTTTGATGAGATTAAGGCGGCTACAAAGAATTTCTCTAGGTTGAATATAGTTGGGACAGGAGGGTATGGGAATGTGTATAAGGGTGTGTTGCCGGGTGGGATTGAAGTAGCATTGAAGAGGTTCAAGAATTGTTCGGTTGCTGGTGATGCGAATTTCACTCATGAAGTGGAGGTTATTGCTAGTGTTAGGCATGTGAATTTGGTGGCTTTGAGAGGGTACTGCACAGCGACAACCCCTTTTGAGGGTCACCAGAGGATCATTGTTTGTGATTTGATGAAGAATGGGAGTCTTCATGATCATTTGTTTGGAACGAGACATGAAAAATTGAGTTGGGGTATTAGGCAGAAGGTTGCAATTGGCACTGCTAGAGGATTGGCTTACCTGCATTATGGAGCACAACCGGGTATTATTCACAGGGATATTAAGGCTAGTAATATACTTCTAGATGAGAGTTTTGAACCTAAGGTGGCGGATTTTGGATTGGCTAAGTTCACTCCTGAAGGGATGACTCATTTGAGCACTCGTGTAGCAGGAACGATGGGGTATGTAGCACCTGAGTATGCTTTGTATGGCCAATTGACTGAAAGGAGCGATGTTTATAGCTTTGGAGTTGTGCTTCTTGAGCTTTTGAGTGGAAAGAAAGCAATAATGGAGTTTAAGGATGGGCAGCCGACGCTTGTGACTGATTGGGCCTGGTCATTGGTTAGGGAAGGCAGAGCATTAGATGTTCTTGAAGACAGCATTCCGCATTTGGGGCCTCCAGAAGTTATGGAGAAGTATGTA</gDNA_template>
            <first_frame> G  G  R  G  K  L  G  W  Q  K  S  G  I  L  R  D  W  R  V  T  *  V  L  V  W  I  R  L  V  E  V  L  L  *  L  G  I  V  L  M  R  L  R  R  L  Q  R  I  S  L  G  *  I  *  L  G  Q  E  G  M  G  M  C  I  R  V  C  C  R  V  G  L  K  *  H  *  R  G  S  R  I  V  R  L  L  V  M  R  I  S  L  M  K  W  R  L  L  L  V  L  G  M  *  I  W  W  L  *  E  G  T  A  Q  R  Q  P  L  L  R  V  T  R  G  S  L  F  V  I  *  *  R  M  G  V  F  M  I  I  C  L  E  R  D  M  K  N  *  V  G  V  L  G  R  R  L  Q  L  A  L  L  E  D  W  L  T  C  I  M  E  H  N  R  V  L  F  T  G  I  L  R  L  V  I  Y  F  *  M  R  V  L  N  L  R  W  R  I  L  D  W  L  S  S  L  L  K  G  *  L  I  *  A  L  V  *  Q  E  R  W  G  M  *  H  L  S  M  L  C  M  A  N  *  L  K  G  A  M  F  I  A  L  E  L  C  F  L  S  F  *  V  E  R  K  Q  *  W  S  L  R  M  G  S  R  R  L  *  L  I  G  P  G  H  W  L  G  K  A  E  H  *  M  F  L  K  T  A  F  R  I  W  G  L  Q  K  L  W  R  S  M   </first_frame>
            <second_frame>  E  E  E  E  N  W  V  G  K  K  V  E  Y  *  E  I  G  E  *  L  E  F  S  F  G  F  D  *  W  K  Y  Y  F  D  *  V  *  F  *  *  D  *  G  G  Y  K  E  F  L  *  V  E  Y  S  W  D  R  R  V  W  E  C  V  *  G  C  V  A  G  W  D  *  S  S  I  E  E  V  Q  E  L  F  G  C  W  *  C  E  F  H  S  *  S  G  G  Y  C  *  C  *  A  C  E  F  G  G  F  E  R  V  L  H  S  D  N  P  F  *  G  S  P  E  D  H  C  L  *  F  D  E  E  W  E  S  S  *  S  F  V  W  N  E  T  *  K  I  E  L  G  Y  *  A  E  G  C  N  W  H  C  *  R  I  G  L  P  A  L  W  S  T  T  G  Y  Y  S  Q  G  Y  *  G  *  *  Y  T  S  R  *  E  F  *  T  *  G  G  G  F  W  I  G  *  V  H  S  *  R  D  D  S  F  E  H  S  C  S  R  N  D  G  V  C  S  T  *  V  C  F  V  W  P  I  D  *  K  E  R  C  L  *  L  W  S  C  A  S  *  A  F  E  W  K  E  S  N  N  G  V  *  G  W  A  A  D  A  C  D  *  L  G  L  V  I  G  *  G  R  Q  S  I  R  C  S  *  R  Q  H  S  A  F  G  A  S  R  S  Y  G  E  V  C  </second_frame>
            <third_frame>   R  K  R  K  I  G  L  A  K  K  W  N  T  K  R  L  E  S  N  L  S  S  R  L  D  S  I  S  G  S  T  T  L  I  R  Y  S  F  D  E  I  K  A  A  T  K  N  F  S  R  L  N  I  V  G  T  G  G  Y  G  N  V  Y  K  G  V  L  P  G  G  I  E  V  A  L  K  R  F  K  N  C  S  V  A  G  D  A  N  F  T  H  E  V  E  V  I  A  S  V  R  H  V  N  L  V  A  L  R  G  Y  C  T  A  T  T  P  F  E  G  H  Q  R  I  I  V  C  D  L  M  K  N  G  S  L  H  D  H  L  F  G  T  R  H  E  K  L  S  W  G  I  R  Q  K  V  A  I  G  T  A  R  G  L  A  Y  L  H  Y  G  A  Q  P  G  I  I  H  R  D  I  K  A  S  N  I  L  L  D  E  S  F  E  P  K  V  A  D  F  G  L  A  K  F  T  P  E  G  M  T  H  L  S  T  R  V  A  G  T  M  G  Y  V  A  P  E  Y  A  L  Y  G  Q  L  T  E  R  S  D  V  Y  S  F  G  V  V  L  L  E  L  L  S  G  K  K  A  I  M  E  F  K  D  G  Q  P  T  L  V  T  D  W  A  W  S  L  V  R  E  G  R  A  L  D  V  L  E  D  S  I  P  H  L  G  P  P  E  V  M  E  K  Y  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0226J12.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142660" stop="141767"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>894</number_coding_nucleotides>
                  <number_encoded_amino_acids>298</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKRKIGLAKKWNTKRLESNLSSRLDSISGSTTLIRYSFDEIKAATKNFSRLNIVGTGGYGNVYKGVLPGGIEVALKRFKNCSVAGDANFTHEVEVIASVRHVNLVALRGYCTATTPFEGHQRIIVCDLMKNGSLHDHLFGTRHEKLSWGIRQKVAIGTARGLAYLHYGAQPGIIHRDIKASNILLDESFEPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGKKAIMEFKDGQPTLVTDWAWSLVREGRALDVLEDSIPHLGPPEVMEKYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 222 chains have been computed
$ 
$ memory statistics:
$ 127112 bytes spliced alignments in total
$ 39 spliced alignments have been stored
$ 3259 bytes was the average size of a spliced alignment
$ 20248 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1557 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 273 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-02 15:48:44
-->
